>input_sequence_57144
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----------------------------------------------ATGGCGACTCAGTGGTTCTCCAATATGGTAATTT
GCTGCTCGTTTTCTGATGGCGTCGGGTGTAATGGTGTGGGAAGAGGTGGGTGGTGGCTGACTGGTTGTTGTTCATGGTTT
GGTGGCGTGCAGGTGATGGACGAGCCGAGCTTCTTCCACCAGTGGCAGTCGGACGCGACGCTGGAGCAGTACACGGAGCA
GCAGATCGCCGTGGCCTTCGGGCAGGGGGAGATGGAGGCGGCGGCGCTGATGCAGCAGCAGCA---GTACGC------CG
CGGCGGCGGCGGCGGGCGAGCACCGGCCGCGCAAGGCGGCCAAGGTCAACACCAGCTGGGACTCGTGCGTCACGGAGCAG
GGCTCCCCCGCCGACTCCTCCTCCCCGACCATCCTCTCCTTCGGCGGCCACGGCCACGC------CGACGCGTTCGCCAA
GGCGCCGCAGGCCCCCAGCGCCGCCGCCGCCGCCTACTACGGCGCGGC------------GCCCGTGAAGCCCAAGCAGG
AGGTCGACGCGGGGGGCGTGGCGCCGTTCCAGCAGGTCAAGCGCAGCTACGACGCCATGGTCGCCGAGCCCGCCAGGGCG
CCCTCCCGGCCGGCCGCCCAGAACCAGGACCACATCATGGCCGAGCGCAAGCGCCGCGAGAAGCTCAGCGAGCGCTTCAT
CGCGCTCTCCAAGATCGTGCCGGGCCTCAAGAAGATGGACAAGGCGTCGGTGCTGGGCGACGCGATCAAGTACGTCAAGA
CGCTGCAGGAGCAGGTGAAGGGCATGGAGGAGGTGGCCCGCAGGCGGCCGGTGGAGTCGGCGGTGCTGGTCAAGAAGTCG
CAGCTCGCCGCCGAGGAGGACGACGGGTCGTCCTGCGACGAGAACTTCGAGGGCGCCGACGCCGGGCTGCCGGAGATCGA
GGCCCGGATGTCGGACCGCACCGTGCTCGTCAAGATCCACTGCGAGAACCGCAGGGGCGTCCTCGTCGCCGCGCTCTCCG
AGCTCGAGAGCATCGACCTCGCCATCATGAACACCAATGTGCTCCCCTTCACCGCCTCCTCCATCGACATCACCATCATG
GCCACGGTCAGCCCCCAATCATCTCCACTTCTTAATTGCTCCATAATTTACTAC----------------------TTAA
TTAATTACATGGTCTCACTCACTG----ATGGATTAATCTGTTGCAGGCCGGCGAGGACTTCTCGTTGTCAGTCAAGGAC
ATCGTCAGGAAGCTACATCAAGCGTTCAAGTCGTCGCCATGA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------
>chr4D_1_TraesCS4D01G056900
TTGGTTTTGTTTTTGCTGAGAGCACTCAAATGTCCGAACAAGCTAAAATTCACACGGACCTCACGCACTCAAACATCGTA
TGAGCTCGGGTTCAAAAATGTATATTCGAAACCTTACATTCTTTGTATGTAGT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ATATAGAATATAGATATACAGAC--ACACCATCTCATATCACATACAAAAAGGATTGGCA
CATTTATATCTGCTTCCGATATGCACAATCTAAAAATAAAATCCAAGTGGCTTAACACCATTCCCGAACAACCCGAACGC
CCCTGCGACGACGAAACGCCCAACCAA--ACACCAGCAGAAGCGACAAGAACCCATATCGCTCCCAATATTTGGGATCCC
CCAGCATTTCACACAACATCTGCCCC-ATCTCCATTGACATCACCATGAAGCAATCCATCCCAGCGAATTAAAATATCTC
CCTGTCAGCCAATACCGCAATCGCTCGAGGGAGACAGCGAGAGAGCAATAATGTAGGTAGT------------ATGCTTG
ACATAATGCTACTCCAAACCCTTTGTTAAAAAAAAGGGCACGGTGCAGC---GGGATAGGTGACTTGAGCGAGCGAGCGA
GGGAGGCAGCCACCATTGGTACAGTCTGCGGATGAAAGGAAGGGGA-GGGAGGCCGAGTAGTTCACACCCGACCTAGAAC
AAGAGGCCTTAAAATAGTCTCCCGCCCCC-GTCGCAGAGGTTATATAAGGTCGCCTCCGTTGGACATTGGTGCAAAGGAA
AGGGACCAATACCACATCGCCGGCTGACCCATCTCTCTCCCTCTCTCC----CTCTCTCTCTCTCCCAAGGTTGGTCTCT
-T-CCCTGATAATTTCTACCCACGG----GCTGCATTGCTATGTGTTTGCCTTGCGCAATGCTAACTGCTCTGTTTTCGT
GCGTGTTTTTCTCATCAGGATTCGGGCTGTTCGGTCGAGCTT---GTGGAAGCAGTTTGCTGCGATCTTTGGCTTTGGAG
GCGAGGAGTTTCGAGG----GAGCGAGCGATTTTTAGTATCTGCGAATGGCGACTCAGTGGTTCTCCAATATGGTAATTT
GCTGCTCGTTTTCTGATGGCGTCGGGTGTAATGGTGTGGGAAGAGGTGGGTGGTGGCTGACTGGTTGTTGTTCATGGTTT
GGTGGCGTGCAGGTGATGGACGAGCCGAGCTTCTTCCACCAGTGGCAGTCGGACGCGACGCTGGAGCAGTACACGGAGCA
GCAGATCGCCGTGGCCTTCGGGCAGGGGGAGATGGAGGCGGCGGCGCTGATGCAGCAGCAGCA---GTACGC------CG
CGGCGGCGGCGGCGGGCGAGCACCGGCCGCGCAAGGCGGCCAAGGTCAACACCAGCTGGGACTCGTGCGTCACGGAGCAG
GGCTCCCCCGCCGACTCCTCCTCCCCGACCATCCTCTCCTTCGGCGGCCACGGCCACGC------CGACGCGTTCGCCAA
GGCGCCGCAGGCCCCCAGCGCCGCCGCCGCCGCCTACTACGGCGCGGC------------GCCCGTGAAGCCCAAGCAGG
AGGTCGACGCGGGGGGCGTGGCGCCGTTCCAGCAGGTCAAGCGCAGCTACGACGCCATGGTCGCCGAGCCCGCCAGGGCG
CCCTCCCGGCCGGCCGCCCAGAACCAGGACCACATCATGGCCGAGCGCAAGCGCCGCGAGAAGCTCAGCGAGCGCTTCAT
CGCGCTCTCCAAGATCGTGCCGGGCCTCAAGAAGATGGACAAGGCGTCGGTGCTGGGCGACGCGATCAAGTACGTCAAGA
CGCTGCAGGAGCAGGTGAAGGGCATGGAGGAGGTGGCCCGCAGGCGGCCGGTGGAGTCGGCGGTGCTGGTCAAGAAGTCG
CAGCTCGCCGCCGAGGAGGACGACGGGTCGTCCTGCGACGAGAACTTCGAGGGCGCCGACGCCGGGCTGCCGGAGATCGA
GGCCCGGATGTCGGACCGCACCGTGCTCGTCAAGATCCACTGCGAGAACCGCAGGGGCGTCCTCGTCGCCGCGCTCTCCG
AGCTCGAGAGCATCGACCTCGCCATCATGAACACCAATGTGCTCCCCTTCACCGCCTCCTCCATCGACATCACCATCATG
GCCACGGTCAGCCCCCAATCATCTCCACTTCTTAATTGCTCCATAATTTACTAC----------------------TTAA
TTAATTACATGGTCTCACTCACTG----ATGGATTAATCTGTTGCAGGCCGGCGAGGACTTCTCGTTGTCAGTCAAGGAC
ATCGTCAGGAAGCTACATCAAGCGTTCAAGTCGTCGCCATGAAGGACTTGCTCCTGA---TCAAGTCTAATTTAGAACTT
TGGCTTCTGTTTCTCTCCT-TTTTTTCACCATTAGCCTCGAGGATTTGGGGCTAATGAGTTTTAGGTTCATCCCCGCTGG
TGCTTCTGATGATAGCTCCCTTGCAGTCCCCCACACGGTGCCCCTCAAAGATAGCCATTT-CCACCTTTTTTTGCCCCAT
GGGTGCAGCAAAAACACTAGTAAATTACTTCTACCCTCT-CCCTTTTTTTGCATGGTTTGATCAG-ATCATTCCATGTTC
CTGGGAGAGAGTAGAGTGACAAAAAATGAGACATGTCTTTTTCTAGGGCTAGTTACCAAGGGGAGTTTGAATTTTACAAA
AACCCATTTTTCATTTCTCCCCTACATCAATATAGCCCTTTTCACCCTGTTTTTT--CGACGAGAGGCCGGTTCGAG--T
TTTTTTTCAAACCCAAACACCTACCCTTTGCCGTCCTCTCAAATCCCACCA-----CTGTTCCCGGAAGGCTTCAAATAT
CTGTGGACAAAAATGGCGTCTTCTTTTTTTTCAGCACCGAGGGGG-ACTTTTGCAAGCCTT-G-ATTCAGAAGTTCAGTA
GTAGGGTGTGCCTGTTTTTCAGGGCTAGTGCAAGCTGGTTGGTTG---------GC--------TTGGATGAA-CCCTTT
GCTTGTAGTTTCCTTATGGTTTTTGTTGTAACAGGATCAAGATTGTAGCTCAGCCCGACCTGTACCCTCTTGTTTGCTTG
CATACAAGTATAAAGAATAAATAAATATGCTCGGTTGTTAACTTGATGGATCTCTCTCTTGGTTACATGTCTTTTCAGCT
AAGATAT----GTCTTTTCTTAGTAGTATTCAAACATATCTTTCTAATTTGTTTATGGATACAGAATCGTTAAACGATCT
TGTATATTGTCCTGCCTGGATAGGACTATCATACTATGTATTACCTGTCCACAAATGAATATA---CAAGATTATAAGGG
CGGCACTCCTTTGTTCATTCAAAAGAATTGTTAAACGACATTGAGG
>chr4B_80
ATGAGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TCGGGTTCAG-AAATGGATATTCGAAACAATACATTCTTTTTGTG--------------
--------------------------------------------------------------------------------
--------------TAGTATATATAAAATATGGATATATCGAT--ACACCATCTCATATCACATACAAAAAGGATTGGTA
CATCTATATCTACTTCTGATATGCAAAATCTCCAAATAAAATCCAAGTGGCCTCACACCATTCCCGAACAACCCGAACGC
CCCTGCGACGACGAAACGCCCAACCAATAACGCTAGCAGAAGCGACAAGAACCCATATCACTCCCAATATTTGGGATCCC
CCGGCATTTCACACAACCTGTGCCCCGATCTCCCTTGACATCACCATGAAGTAATCCATCCCAGCGAATTAAAATATCTC
CCTGTCAGCCAATACCGCAATCGCTTGAGGGAGAAAGCGAGAGAGCAATAATGTAAGTAGTACTGTACTCCGTATGCTTG
ACATAATGCTACTCCAAACCCTTTGTTAAAAAAGGGGTGCA--------GGGGGGATAGGTGACTTGAGCGAGCG-----
---AGGCAGCCACCATTGGTACAGTCTGCGGATGAAAGGAAGGTGA-GGGAGGCCGAGTAGTTCACACCCGACCTAGACC
AAGAGGCCTTAAAATAGTCCCCCGCCCCCCGTCGCAGAGGTTATATAAGGTCGCCTCCGTTGGACATTGGTGCAAAGGAA
AGGGACCAATACCACATCGCCGGCTGACCCATCTCTCTCCCTATCTCTCTGTCTCTCTCTCTCTCCCAAGGTTGGTCTCT
CTTCCGTGATAATTTTTACCCACGGGCAGGCTGCATTGCTATGTGTTTGCTTTGCCCAATGCTAACTGCTCTGCTTTCGT
GCGTGTTCTTCTGATCAGGATTCCGGCTGTTTGCT-GAGCTT---GACGAAGCAGTTTGCTGCAGTCTTTGGCTTGGA-G
GCGAGGCGTTTCGAGGGAGCGAGCGAGCGATTTTTAGTATCTGCGAATGGCGACTCAGTGGTTCTCCAATATGGTAATTT
GCTGCTCGTCTTCTGATAGCGTCGGGTGTAATGGTGTGGGGCGAGCTG---GGTGGCTGACTGGTTGTTC---CTGGTTT
GGTGGCGTGCAGGTGATGGACGAGCCGAGTTTCTTCCACCAGTGGCAGTCGGACGCGACGCTGGAGCAGTACACGGAGCA
GCAGATCGCCGTGGCCTTCGGGCAGGGGGAGATGGAGGCGGCGGCGCTGATGCAGCAGCAGCATCAGTACGC------CG
CGG---CGGCGGCGGGCGAGCACCGGCCGCGCAAGGCGGCCAAGGTCAACACCAGCTGGGACTCGTGCGTCACGGAGCAG
GGCTCCCCCGCCGACTCCTCCTCCCCGACCATCCTCTCCTTCGGCG------GCCACGC------CGACGCGTTCGCCAA
GGCGCCGCAGGCCCCCAGCGCCGCC---GCCGCCTACTACGGCGCGGCCTCCGCGGCGGCGCCCGTGAAGCCCAAGCAGG
AGGTTGACGCGGGGGCCGTGGCGTCGTTCCAGCAGGTCAAGCGGAGCTACGACGCCATGGTCGCCGAGCCCGCCAGGGCG
CCCTCCCGGCCGGCCGCCCAGAACCAGGACCACATCATGGCCGAGAGGAAGCGCCGGGAGAAGCTCAGCGAGCGCTTCAT
CGCGCTCTCCAAGATCGTGCCGGGCCTCAAGAAGATGGACAAGGCGTCGGTGCTGGGCGACGCGATCAAGTACGTCAAGA
CGCTGCAGGAGCAGGTGAAGGGCATGGAGGAGGTGGCCCGGCGGCGGCCGGTGGAGTCGGCGGTGCTGGTCAAGAAGTCG
CAGCTCGCCGCCGACGAGGACGACGGGTCGTCCTGCGACGAGAACTTCGAGGGCGCCGACGCCGGGCTGCCGGAGATCGA
GGCCCGGATGTCGGACCGCACGGTGCTCGTCAAGATCCACTGCGAGAACCGCAGGGGCGTCCTCGTCGCCGCGCTCTCCG
AGCTCGAGAGCATCGACCTCGCCATCATGAACACCAATGTGCTCCCCTTCACCACCTCCTCCATCGACATCACCATCATG
GCCACGGTCAGCCCCCAATCATCTCCACTTCTTAATTGCCCCATAATTTACTACCAGTACATGTAATAAAAACCACTTAA
TTAATTACTTAGTCTGACTGATATG--------TTAATCTGATGCAGGCCGGCGAAGACTTCTCGTTGTCTGTCAAGGAC
ATCGTCAGGAAGCTACATCAAGCGTTCAAGTCGTCGCCATGAAGGACTTGCTCCTCA---ACAAGTCTAATTTAGATCTT
TGGCTTCTGTTTCCCTCCT-TTTTTTCATCATTAGCCCCGAGGATTTGGGGCTAATGAGTTTTAGGTTCTTCCCCGCTGG
TGCTGATGATGATAGCTCGCTTGCAGTCCCCCACACGGTGCCCCTCAAAGATAGCCATTT-CCCACCTTTTTTGCCCCAT
GGGTGCAGCAAAACCACTAGTTAATTACTTCTACCCTCTCCCTTTTTTTTGCATGGTTTGATCAAAACCACTCCATGTTC
CTGGGAGAGAGTAGAGTGAGAAAAAATGAGACAAGTCTTTTTCTAGGGCTAGTTACCAAGGGGAGTTTGAATTTTACAAA
AACCCATTTTTCATTTCTCCCCTACACCAATATTGCCCTTTTCACCCTGTTTTTTTTCGACGAGAGGCCGGACCGAG---
-TTTTTTCAAACCCAAACACCTACC-TTTGCCGGCCTCTCAAATCCTACCATA---CTGTTCCCAGAAGGCTTCAAATAT
CTGTGGACAAAAATGGCATCT--TTTTTTTTCAGCACCGAGGGGGGACTTTTGCAAGCCTTTG-ATTCAGAAGTGCAGTA
GTAGGGTGTGCCTGTTTTTCAGGGCCAGTGCAAGCTGGTTGGTTG---------GCCCAGCAGCTTGGATGAA-CCCTTT
GCTTTTAGTTTCTTTATGGTTTTTGTTGTAACAGGATCAAGATTGTAGCTC-----GATCTGTACTCTCTTGTTTGCTTG
CATACAAGTATAAAGAATAAATAAATATGCTCGGTTGTTAACTTGATGGATCTCTCTCTTGGTTACATGTCTTTTCAGCT
AAGATATATATGTCTTTTCTTAGTAATATTGAAACATATCTTCCTAATTTGTTTATGGAC-CAGAATCGTTAAACGATCT
TGTATGTTGTCCTGGATATATAGAACTATCATACTATGTATTACCTGTCCACAAATCA--ATA---CAAGATTATGTGGG
CGGCACTCTTTTGTTCATACAAAAGAATCGTTAAACGATATCGAGG
>chr4A_129
TATATAGAATATAGATAGACATATACACCATCTCACATCACATACATAAAGGATTGGTACATCTATATCTGCTTCTGATA
TGCACAATCTCAAAATTAAATCCAAGTGGCCTAACACCATTCCCGAACAACCTGAACGCCCCTGCGACGACGAAACGCCC
AACCAAACGCTAGTAGAAGCGACAAAAACCTTACGAGAGTGACTAAATGGCTCCCGAAGTCATCTTCTCCTACATGTGAA
GACTAAAACAAATAAAAATACTAAGGAAATTCAAAAAAAATCTGAACTTTTTTGACATGGAAGATTTGAGTGCACGAGAA
CAGTGCCAATTTTCAGCTCGTTTGGGCATCTGAGTAGCTGTTAGCAAAAAAAATTAGGGTATGTGAAAAAGTTTAGTATT
CATGCACTATTCAAACTGATTTTGTTTTTGTTTTTGCTGAGAGCTACTTAGATGTCCGAACGAGCTGAAATTTCACACGG
ACCTCACGCACTCAAACTTCTTCCATGCAATAAAAAAAATCAGAATTTTCTGAATTTTTTAGTATTTTAGTATTTTTACT
GTTTACCAAGATCATTTGAGCTCGGGTTCAAAAAATGGATATTCGAAACCTTACATTCTTTTTAAGTAGTACTCCCTTCG
TTCCAAATTACTCGTCGTAGAAATAGATGTATCTAGAACTAAAATACATCTAGATACATCCATATCTGTGACAAGTAATT
CGGAACGGAGGAAATAGTATATATAGAATATAGATATACAGATACACACCATCTCATATCACACACAAAAGGGATCGATA
CATCTATATCTGCTTCCGATATGCACAATCTTCAAATTAAATCCAAGTGGCCACACACCATTCCCGAACAACCCGAACGC
CCCTGCGACGACGAAACGCCCAACCAA--ACACCAGTACAAGTGACAAAAACCTG--TCACTCCCAATATTTGGGATCCC
CCAGCATTTCACACAAC------------CTCCATTGACATCACCATGAAGTAATCCATTCCAGCGAATTAAAATATCTC
CCTGTCAGCCAATGCCGCAAGGCTT-------------GAGAGAGCAATAATGTAAGCTC---------------GCTTG
ACATAATGCTACTCCAAACCCGTTTTTAAAAGGGGGCTACAGTGCAGGGGGGTGGACAGGTGACTTGGGCGAGCGAGCG-
---AGGCAGCCACCATTGGCACAGTCTGCGGACGAAAGGAAGGGGATGGGTGGCCGAGTAGTTCACACCCGACCTAGAAC
AAGAGGCCTTAAAATAGTCTCCCGTCCTTGATCCCAGCGGTTATATAAGGTCGCCTCCGTTGGACATTGGTGCAAAGGAA
AGGGACCAATACCACATCGCCGGCTGACCCATCTCTCTCTCTG----------TCTCTCTCTCTCCCGAGGTTGGTCTCT
CT-CCCTGAGAATTTCTACCCACGG----GCTGCATTGCTGTGTGCTTGCTTTGCGCAATGCTAACTGCTCTGTTTTCGT
GCGCGTTTTCCTGATCAGGGTTCCGGCTGGTCGATCGGGCTTGTGGAAGAAGCAGTTTGCTGCAACCTTTGGCTTTGG-G
GTGAGCG-----------GCGAGCGAGCGATTTTTAGTATCGGCGAATGGCGACTCAGTGGTTCTCCAATATGGTAATTT
GCTGCTCGTCTTCTGATAGCGTCGGGTGTAATGGTGTGGGAAGAGGTGGGTGGTGGCTGACTGGTTGATG---ATGGTTT
GGTGGCGCGCAGGTGATGGACGAGCCGAGCTTCTTCCACCAGTGGCAGTCGGACGCGACGCTGGAGCAGTACACGGAGCA
GCAGATCGCCGTGGCCTTCGGGCAGGGGGAGATGGAGGCGGCGGCGCTGATGCAGCAGCAGCA---GCAGCAGCAGTACG
CGGCGGCGGCGGCGGGCGAGCACCGGCCGCGCAAGGCGGCCAAGGTCAACACCAGCTGGGACTCGTGCGTCACGGAGCAG
GGCTCCCCCGCCGACTCCTCCTCCCCGACCATCCTCTCCTTCGGCG------GCCACGCCCACGCCGACGCGTTCGCCAA
GGCGCCGCAGGCCCCCAGCGCCGCCA---CCGCCTACTACGGCGCGGC---------GGCGCCCGTGAAGCCCAAGCAGG
AGGTCGACGCGGGGGGCGTGGCGCCGTTCCAGCAGGTCAAGCGGAGCTACGACGCCATGGCCGCCGAGCCCGCCAGGGCG
CCCTCCCGGCCGGCCGCCCAGAACCAGGACCACATCCTGGCGGAGCGGAGGCGCCGCGAGAAGCTCAGCGAGCGCTTCAT
CGCGCTCTCCAAGATCGTGCCGGGGCTCAAGAAGATGGACAAGGCGTCGGTGCTGGGCGACGCGATCAAGTACGTCAAGA
CGCTGCAGGAGCAGGTGAAGGGCATGGAGGAGGTGGCCCGGCGGCGGCCGGTGGAGTCGGCGGTGCTGGTCAAGAAGTCG
CAGCTCGCCGCCGACGAGGACGACGGGTCGTCCTGCGACGAGAACTTCGAGGGCGCCGACGCCGGGCTGCCAGAGATCGA
GGCCCGGATGTCGGACCGCACCGTGCTCGTCAAGATCCACTGCGAGAACCGCAGGGGCGTGCTCGTCGCCGCGCTCTCCG
AGCTCGAGAGCATCGACCTCGCCATCATGAACACCAATGTGCTCCCCTTCACCGCCTCCTCCATCGACATCACCATCATG
GCCACGGTCAGCCCCCAATCATCTCCTCTTCTTAATTCCTCCATAATTTACTAC----------------------TCAA
TTAATTACATGGTCTCACTCACTCAATCATGTATTAATCTGATGCAGGCCGGCGAGGACTTCTCGTTGTCTGTCAAGGAC
ATCGTGAGGAAGCTACATCAAGCGTTCAAGTCGTCGCCATGAAGGACTTGCTCCTGAACATCAAGTCTAATTTAGAACTT
TGTCTTCGGTTTCCCTCTTCTTTTTTCATCATTAGCCTCGACGATTTGGGGCTAATGAGTTTTAGGTTCGTCCCCGCTGG
TGCTTCTGATGATAGCTCGCTTGCAGTCCCCCACACGGTGCCCCTCAAAGATAGCCATTTTCCACCTTTTTTTGCCCCAT
GGGTGCAGCAAAAAACACTATCTACTT-------CCTCT-CCCTTTTTTTGCATGGATTGATCAAAATCACTCCATGTTC
CCGGGAGAGGGTAGAGTGAGAAAAA-TGAGACATGTCTTTTTCTAGGGCTAGTTACCAAGGGGAGTTTGAATTTTACAAA
AACCCATTTTTCATTTCTCCCCTACACCAATACAGCCCTTTTCACCCTGTTTTTT--CGACGAGAGGCCGGACCGAGTTT
TTTTTTTCAAACCCAAACACCTACC-TTTGCCGGCCTCTCAAATTCCACCACAGTGCTGTTCCCAGAAGGTTTCAAATAT
CTGTGGACAAAAATGGCGTCTTCTTTTTTTTCAGCACCGTGGGGGTACTTTTGCAAGCCTTTGAATTCAGAAGTTCAGTA
G---GGTGTGCCTGTTTTTCAGGGGTAGTGCAAGCTGGTTGGTTGGACCCAGCAGC--------TTGGATGAACCCCTTT
GCTTGTAGTTTCCTTATGGCTTTTGTTGTAACAGGATCAGGGTTGTAGCTC-----GATCTGTAAGCTCTTGTTTGCTTG
CATACAAGTATAAAGATTAAATAAATATGCTCGGTTGTTAACTTGATGGATCTCTCTCTTGGTTACATGTCTTTTCAGCT
AAGATC----TGTCTTTTCTTAGTAGTATTGAAACATATCTTTCTAATTTGTTTATGGATACAGAATCGCTAAACGATCT
TGTATGTTGTCCTGTATATATAGAAGTATCATACTATGTATTACCTGTCCACAAATCA--ATACTACAAGATTATAAGGG
CGGCACTTGTTTGTTCATGAAAAAGGATCGTTAAATGATATCGAGG
>SNPs
---S-SSSS-S-SSSSS--S-SSSSSSSS--S--SS-S--SSSSS-S-SSSSSSS--SS-SSSSSS-SSSSSSSS-SS--
--SS-SSSSSSSS--SS-SS-SS-SSS-SSSSSSS--SS-SSSS-S-SSSSS----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-----------------------------------S-
---S---------------------------SS------------------S-S--------------------------
-----------------------------------------------------------S--------------------
-----------------S-S-------------------------------S----------------------------
-------------------------S--------S--------------------S------------------------
---------------------------------SS--SSSS-SSSSS-S------------------------------S
SSS-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S----S--------------------------------
--------------------------------------------------S-----------------------------
------------S----------S---------S------------SS---------------S--------------S-
------S-------------------------------------------------------------------------
---------S-------S----------------------------------------------------SSS-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------SSSSSS----------------------------
-------------------------SSS----------------------------------------------------
-------------------------------------------S------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
----------------------------------------SS--------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S-------S---------S----------------------------S---------
--------------------------------------------------------------------------------
-------------S--------------S----------------------------------------S----------
------------------S-------------------------------------------------------------
---------------------S------------------------------------------S-----S---------
-------------------S------------------------------------------------------------
--------------------------S--------------------------------------------SS-------
-------------------------S-------S------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------SSSSS--S------S--------------
--------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
-----S--------SS-SS----S--------------------------------S-SS--------------------
--------S---------S---------S---------S--S----
>forward_78
----------------------------------------------------------CCTCACGCACTCAAACATCG--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_1690
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TTTCTGATGGCGTCGGGTG----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------
>forward_978
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------CC
CCAGCATTTCACACAACA--------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------
>reverse_2832
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------GATTAATCTGTTGCAGGCCGG----------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>forward_1751
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------GGTGGCTGACTGGTTGTTGT---------
--------------------------------------------------------------------------------
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----------------------------------------------
>reverse_3654
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------CCCGACCTGTACCCTCTTGT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
