>input_sequence_57116
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------------------------------------ATGCTGGGGAGGACGCTGCCGAGGCTGGCCTCGGTGAAGGACCG
GGTGGCCGGCGCGGCCAAGAGCGCCGTGAAGGGCGACGAGCACTTCCCCGCGCTCAAGGGCCACCCGGCCGCGCGCGTCC
ACGCACGTGAGGCCGCGGAGAAGCAGGCCGGCCTCGCCGCGGCGGAGGAAGAGAAGAAGCGCGGCGGCAAGGCCGCGACG
CTGAAGGAGTTCCAGATATACCGGTGGAACCCGGACGCGCATGGCCGGCCGTTCCTGCAGTCATACTTCGTCGACCTCGG
CACGTGCGGCCCAATGGTACGCTGCGTTGAGCTTACTGTTCGTTTTGCAGCTTGCTTGTGCCCGCATCAACGGTCGTGCA
TGTGCATGTCTAGGTCCTGGACGTGCTCCAGAAGATCAAGTCGGAGCACGACTCGACGCTGGCGTTCCGGCGGTCGTGCC
GGGAGGGCATCTGTGGCTCCTGCTCCATGAACATCGACGGGGTGAACACGGTGGCGTGCCTGAAGCCCATCGACACCGAC
ACGTCGACGGCGACGATGATCACGCCGCTGCCACACATGTACGTGGTGAAGGACCTCGTCGTCGACCTCACCAACTTCTA
CCAGCAGTACAAGT----ACGCACGCACCTACTCGTTAAGTTGCATACCACCTAG--TAGTCGTTAATGTTGCAATGACC
AAACGAGTAATGG-AAGGTCGATTGAGCCGTGGCTGAAGACGAAGCGACCGGCGCCGGAGGGGCGGGAGCACGCGCAGTC
ACCGGGCGAGCGGCGGAAGCTGGACGGGTTATACGAGTGCATCCTGTGCGCGTGCTGCAGCACGGCTTGCCCATCCTACT
GGTGGAACTCGGAGGATTTCCTCGGCCCCGCCGCGCTGCTGCACGCCTACCGCTGGGTCTCCGACAGGTACCTACTCCTT
TCTA---CTTCCTTCGAACCATATTACTTGTAAAGTTATAGTACTACCAAAACTGCGAAAATTAATTTGGATCGGAGGGA
GTATGATTTTTTGTTTTTGCGGGGATCAACGAGCATCTAACTGGAGTGATTCGTGGTGCAATGACAATTTGAAGCCGCGA
CGACTACGGGGGGCAGCGGATCCAGGCGCTGTCGGAGGGATGGGAC----------GGTGCAGGATGATCAAGAGTTGCA
CGGCGACGTGCCCCAAGAGCCTAGACCCGGCCACGGCCATCTCCGCCTTGAAGACCATGCACCAGCTCCGCAAGGCGTGA
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>chr5B_1_TraesCS5B01G193400
TACACCCGACAACACTGTTTGTACAGCAAGCAAACATGGGGAGAAGGAAAAGAACATGGAAGCAACCCCACCCCACCAAA
AACGCTCTCATATTATAGGATAGAGGGAATATTTAACAAATTTCTAGTATACGATGAACACCTTTTATATACAGTGAACA
TTTTTCCCAATGTATAGTGATTTTTTTTTCTGATACACATTGAACATTTTAAAAATATATACTTTGTAC-----------
--ATTTATTAGCGAAAGGATGAACGAGAAAAATAGAAAATCCGGGCAAAGAAACATAGAGAAGAAATGTTTGTGAATTTG
AAA-----------------------------------AAACATCGTGAATCAAACAATGTTCACGAATTTGAAGAAAGT
TCGCAAATAAAAAAATGTTCACAAATTTATTTATTTTTTGTTTTGCAAATCCAGAATAGTTCATGATTTACAAAAAGTTT
GAAAATCCAAAAAATTTATTT--------------ACGAATTCAACG----TCCACAAATTTAAAATTATTCATGATTTT
AAAAAATGATGTTGGATTTCAAATAATTCTTTATAAATTTATAAATTTTATTTTGAATTCAATAAGTATTCACAATAATC
GAAAAGTCAG--GAATTCAAAAAATATATAAATTCAAAGTTGTTCCTCAATA---AAAAAT--ATTTAAAAATTCAAAAA
ATGATAACTGGTGTTTTACAAATTTAGAATATATTAATTAATTTCAAAAATATTCTTGAATTTCT-AAAAGTTGTAATGA
AAGCTTCCAAAGCCGGTGGAAAAACTATCCCGCCTCGCTACTTGCTTGGGCCTCGGCCTGTGTTAGAGCCCGCATGGGCG
ATCGCTATCCTATCGCGGCCTCAAACCGCTCTTG-TTCCACCTTCCACACGTCCTGTCCTCGCGTGCCACACGTGTCGTC
GGGCA-GGCACGTGCCGTGCAACGCACCAGCCTTTTAGGTCCACCGCTCGAGTGATCCTGGGGCAGGTGTCACGTGCAAC
CGGCCGCACTGCGAGCGAGTACTGCTGCGATTCGCGATGCTGGGGAGGACGCTGCCGAGGCTGGCCTCGGTGAAGGACCG
GGTGGCCGGCGCGGCCAAGAGCGCCGTGAAGGGCGACGAGCACTTCCCCGCGCTCAAGGGCCACCCGGCCGCGCGCGTCC
ACGCACGTGAGGCCGCGGAGAAGCAGGCCGGCCTCGCCGCGGCGGAGGAAGAGAAGAAGCGCGGCGGCAAGGCCGCGACG
CTGAAGGAGTTCCAGATATACCGGTGGAACCCGGACGCGCATGGCCGGCCGTTCCTGCAGTCATACTTCGTCGACCTCGG
CACGTGCGGCCCAATGGTACGCTGCGTTGAGCTTACTGTTCGTTTTGCAGCTTGCTTGTGCCCGCATCAACGGTCGTGCA
TGTGCATGTCTAGGTCCTGGACGTGCTCCAGAAGATCAAGTCGGAGCACGACTCGACGCTGGCGTTCCGGCGGTCGTGCC
GGGAGGGCATCTGTGGCTCCTGCTCCATGAACATCGACGGGGTGAACACGGTGGCGTGCCTGAAGCCCATCGACACCGAC
ACGTCGACGGCGACGATGATCACGCCGCTGCCACACATGTACGTGGTGAAGGACCTCGTCGTCGACCTCACCAACTTCTA
CCAGCAGTACAAGT----ACGCACGCACCTACTCGTTAAGTTGCATACCACCTAG--TAGTCGTTAATGTTGCAATGACC
AAACGAGTAATGG-AAGGTCGATTGAGCCGTGGCTGAAGACGAAGCGACCGGCGCCGGAGGGGCGGGAGCACGCGCAGTC
ACCGGGCGAGCGGCGGAAGCTGGACGGGTTATACGAGTGCATCCTGTGCGCGTGCTGCAGCACGGCTTGCCCATCCTACT
GGTGGAACTCGGAGGATTTCCTCGGCCCCGCCGCGCTGCTGCACGCCTACCGCTGGGTCTCCGACAGGTACCTACTCCTT
TCTA---CTTCCTTCGAACCATATTACTTGTAAAGTTATAGTACTACCAAAACTGCGAAAATTAATTTGGATCGGAGGGA
GTATGATTTTTTGTTTTTGCGGGGATCAACGAGCATCTAACTGGAGTGATTCGTGGTGCAATGACAATTTGAAGCCGCGA
CGACTACGGGGGGCAGCGGATCCAGGCGCTGTCGGAGGGATGGGAC----------GGTGCAGGATGATCAAGAGTTGCA
CGGCGACGTGCCCCAAGAGCCTAGACCCGGCCACGGCCATCTCCGCCTTGAAGACCATGCACCAGCTCCGCAAGGCGTGA
CACTG-----CGAGGAGCACGCACAGCCATGTCAATCGCT-----CGGCAGCTGAATCGCAGCGATGTGACTCGCAACCT
GTGTAGCCTGTGTTGATCTGGAAACTAAATAATGGCTAGGGGATTGTAATTGTAATGGCAGGTGAATCACAGCGGTGTTG
ATTGCAGGCGCAGGTAGTGGG-TTTGCTGTTTAGCT-------------CCCTCTCCTGTCTCCTGTTCTCTTGTTCTGG
AACTTTATATTTTCAATAAAAAACATCAATAATGCTAAACATACAAAGAGTTACGCGCAATTATAGGTCCTGATACTAGA
TCTGGGAAACAAGTAATACTCGCCGCAATTCCTTAATGAAAAGCAGACCTATCTTCTTTGAAAGCCGCAATTCCTTAATG
AAAAGCAGACCTATCTTCTCTTGAAAGACTGTCCATTCCTCGCTTGTTATTGTGATATCAATGAAAGAAAGCCCACCACT
CACACCTATTTCAGACCTTTAAACCCTTGACCACCTAGATCTTTAGTAGCAAAGCAACTAAAAGACCCAATCACAAAAAT
AACCCTCTCTATCCCTTTCAAAACCTTGGCACGAATACTTGTTTTTTCTCTTGTTCTTGATAATATTGTCATTCCACGAA
CGCTTGTTCTTTCTCTTGTTTTTGATGATATTGTAATGGAATCACGAACCTATTTCTTCGCTTTTTCACCAACAAATCTG
AATTATCTTAAAAAATAGAAGGATAGATAAAATTCCAATGGCCATTGGACATGATTCGGTCCGACGCTGATTAGGATTTT
TTTCATCTACTAACCAATCATAAACTTGCCCCCCTCTGGTTTTCAGGGGGTGGGCCGCCTCCCCATTTGTTGACTAATCA
AATTAACTCTCTTTGTAAAATTTTGTAACTCGTTTGTACGTGTAGCATTACTCAAAAAACATACCTTCGGATGGTTGCAG
ATAGAAGTTCGTGGTTTACATCTGAAGAAAAACAGAAAAATTTACTCGTTTCGTTTTAGTGATG
>chr5A_117
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------------------------------------CAAATTTTTATTATACGATGAACACTTTTTATATATAGTGAAAT
TTTCCC---ATGTACGGTGAATATTTTTTCTAATACACACTGATCATTTATACACTGAACGTTTAATTAAATGCACATTG
AAATTTATTAGCAAAAGGATGAATGAGAAAAGTAGAAAAACCGGGCAT-GAAACATAGAGAAGAAATATTTGCCAATTTG
AAAC----------------------------------AAAAATCGCGAATCAAAAAATGTTCACGAATTTTTAGAAAAA
TCTTCAATCAATAAATGGTCACAAATTACTT---------TTTTGCAAATCCAGAATATTCCATGGTTGACAAAAAGTTT
GCAAATCCAAAAACTTTAC--GAATTCAAAAGTTCACAAATTCATTG----TTCACGAATTGAAAA--AAAT--------
--------ATTTAGGATTTCAAAAAATGGTTCATCAATTTCTAAATTTTATTTTGAATTCAATAAATATCCACAAAAATC
GAAAAGGTCACGAATT--AAAAAATCTATAAATTCAAAATAAATCGTCAATA---AAAAATATATTTTGAAAAACAAAAA
TTTAATGGGTGT-TTTTACAAATTTATAAGATACTAAATGATTTCAGAAATATTCTGAAATTTCA-AAAAGTCCGAACGA
AAGCTTCCAAAGCCGGTGGAAAAACGATCCCGCTTCGCTACTTACTTGGGCCTCGGCCCACGTTAGAGCCCGCATGGGCG
ATCGCTATCCTACCGCGGCCTCAAACCGCTCTAGGTTCCACCTTCCACATATCTTGTCCTAGAGTGCCACACGTGTCGTC
GGGCCGGGCACGTGCCGTGCAGCGCATCAGCCTTTTAGGTCCACCGCTCGAGTGATCCTC-GGCAGGTGCCACGTACAAC
CGGCCGCACTGCGAGCGAGTACTGCTGCGATTCGCGATGCTGAGGAGGACGCTGCCGAGGCTGGCGTCGGTGAAGGACCG
GGTGGCTGGCGCGGCCAAGAGGGCCGTGAAGGGCGACGAGCACTTCCCCGCGCTCAAGGGCCACCCGGCCGCGCGCGTCG
ACGCACGAGAGGCCGCGGAGAAGCAGGCCGGCCTCGCCGCGGGCGAGGAGGAGAAGAAGAGCGGCGGCAAGGCCGCGACG
GTGAAGGAGTTCCAGATATACCGGTGGAACCCGGACGCGCATGGCCGGCCGTTCCTGCAGTCCTACTTCGTCGACCTCGG
CACGTGCGGCCCAATGGTACGCTACGTTGGTCTTGCTGTTCG-TTTGCAGCTTGATTGTGCGGGCATGAATGATTGTGCA
TGTGCATGCCTAGGTGCTGGACGTGCTCCAGAAGATCAAGTCGGAGCACGACTCGACGCTGGCGTTCCGGCGGTCGTGCC
GGGAGGGCATCTGCGGCTCCTGCTCCATGAACATCGACGGGGTGAACACGGTGGCGTGCCTGAAGCCCATCGACACCGAC
ACGTCGACGGCGACGATGATTACGCCGCTGCCGCACATGTACGTGGTGAAGGACCTCGTCGTCGACCTCACCAACTTCTA
CCAGCAGTACAAGTACGCACGCACGCGCCTACTCGTTGAGTTACATACCACGTAGTCTAGTCGTTAATGTTGCAATAACC
AAACGAATAATGG-AAGGTCGATTGAGCCGTGGCTGAAGACGAAGCGTGGGGCGCCGGAGGGGCGGGAGCACGCGCAGTC
ACCGGGCGAGCGGCGGAAGCTGGACGGGCTGTACGAGTGCATCCTCTGCGCGTGCTGCAGCACGGCTTGCCCGTCCTACT
GGTGGAACTCCGAGGATTTCCTTGGCCCGGCCGCGCTGCTCCACGCCTACCGCTGGGTCTCCGACAGGTACGTGCGTAGT
ACAGTACTTCGTATGATTTTG-----------------------------------------------------------
-------TTTTTGTTTTTGCGGGGATCAAAGAATATCTAACTAGAGTGATTCGTGGTGCAATGATAATTTGAAGCCGCGA
CGACTACGGGGAGGAGCGGATCCAGGCGCTGTCGGAGGGGTGGGACAAGCTGTACAGGTGCAGGATGATCAAGAGCTGCA
CGGCGACGTGCCCCAAGAGCCTCGACCCGGCCACGGCCATCTCCGCCTTGAAGACCATGCACCAGCTCCGCAAGGCGTGA
CACCACGGCACGAGGAGCCCGCACAGCGATGTCAATCGGTGGCTCCGGCAGCTGAATCGCAGCGATGTGACTCGCAACCT
GTGTAGCCTGTGTTGATCTGGAAACTAAATAATGCCTAGGTAATTGTTGTTGTAATGGCAGGTGAATCACAGCGATGTTG
ATTGCAGGCGCAGGTAGTGGG-TTTCCTGTTAGCT---------------CCTCTCCTGTCTTCTGTTCTCTTGTTCTGG
AACTCTGTATTTCCGTTAAAAAA---------------------------------------------------------
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>chr5D_220
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-----------------------------------------------------------TACGTTGAAC-----------
--ATTTATTAGCAAAAAGATGAATGACAAAAATAGAAAAACTGGGCAAAGAACCATAGAGAAGGAACGTTTGCGAATTTG
AAAAAACTTAGTGAATTAATTTTTTTATGAATTTGAATAAAATTCGTGAATCAGAAAATATTGACGAATTTAAAAAAAAT
TGTCTAATGCAAATAGTTCACGA------------------------------------------ATTTGGAAAAAAATT
GCAGACCCAAAAATTGTTCATGAATTTAAAAGTTCACAAATTCAAAAAATATTCAGGAATTCAAAA--ATTCATTAATTT
TAAAAATGTTTGCGGCTTTCATAAAATTGTTCATGAATTTCTAAAATTGTTCGTGAATTCAATAAATATTCATAAAAATG
AAAAAAATTGCCGAATTCAGAAAATGTGTAAATTTGAAAATATTCTTGAATAGAAAAATAT--ATTTAAAAGCACTAAAA
ATGTTGACCGGTGTTTTTCAGAATTTAGAAAAAATAACGAATTTAAAAAATATTTTCAAATTTCAAAAAAGTCAGAATGA
AAGCTTCCCAAGCCGGTGGG-AAACTATCCCACCTCGCTACTTACTTGGGCCTTGGCCAACATTAGAGCCCGCATGGGCG
ATCCCTATCCTACCTCGGCCTCAAACCGCTCTTGGTTCCACCTTCTACACACCTTGTCCTCGCGTGCCACACGTGTCGTC
GGGCTGGGCACGTGCCGTGCAGCGCATCAGCCTTTTAGGTCCACCGCTCGAGTGATCCTC-GGCAGGTGTCAGGTAGAAC
CGGCCGCACTGCGAGCGAGTACTGCTGCGATTCGCGATGCTGAGGAGGACGCTGCCGAGACTGGCCTCGGTGAAGGACCG
GGTGGCCGGCGCGGCCAAGAGCGCCGTGAAGGGCGACGAGCACTTCCCCGCGCTCAAGGGCCACCCGGCCGCGCGCGTCC
ACGCACGAGAGGCCGCGGAGAAGCAGGCCGGCCTCGCCGCGGCCGAGGAGGAGAAGAAGCGCGGCGGTAAGGCCGCGACG
GTGAAGGAGTTCCAGATATACCGGTGGAATCCGGACGCGCATGGCCGGCCGTTCCTGCAGTCCTACTTCGTCGACCTCGG
CACGTGCGGCCCAATGGTACGCTGCGTTGAGCTTGCTGTTCGTTTTGCAGCTTGCTTGTGCCCGCATCAACGGTCGTGCA
TGTGCATGTCTAGGTGCTGGACGTGCTCCAGAAGATCAAGTCGGAGCACGACTCGACGCTGGCGTTCCGGCGGTCGTGCC
GGGAGGGCATCTGCGGCTCCTGCTCCATGAACATCGACGGGGTGAACACGGTGGCGTGCCTGAAGCCCATCGACACCGAC
ACGTCGACGGCGACGATGATCACGCCGCTGCCGCACATGTACGTGGTGAAGGACCTCGTCGTCGACCTCACCAACTTCTA
CCAGCAGTACAAGTACGCACGCGCGCGCCTACTCGTTAAGTTACATACCAC---G--TAGTCGTTAATGTTGCAATAACC
GCACGAATAATGGAAAGGTCGATTGAGCCGTGGCTGAAGACGAAGCGACCGGCGCCGGAGGGGCGGGAGCACGCGCAGTC
ACCGGGCGAGCGGCGGAAGCTGGACGGGCTGTACGAGTGCATCCTGTGCGCGTGCTGCAGCACGGCTTGCCCGTCCTACT
GGTGGAACTCGGAGGATTTCCTCGGCCCCGCCGCGCTGCTGCACGCCTACCGCTGGGTCTCTGACAGGTACGTACTCCTT
TCTAGTACTTCCTCCGATCCATATTAC----------------------------------TTAATTTGGATCGGAGGGA
GTATGATTTTTTGTTTTTGCGGGGATCAACGAGCATCTAACTAGAGTGATTCGTGGTGCAATGACAATTTGAAGCCGCGA
CGACTACGGGGAGGAGCGGATCCAGGCGCTGTCGGAGGGATGGGACAAGCTGTACAGGTGCAGGATGATCAAGAGCTGTA
CGGCGGCGTGCCCCAAGAGCCTCGACCCGGCCACGGCCATCTCCGCCTTGAAGACCATGCACCAGCTCCGCAAGGCGTGA
CACTG-----CGAGGAGCACGCACAGCTATGTCAATCGCT-----CGGCAGCTGAATCGCAGCGATGTGACTCGCAACTT
GTGTAGCCTGTGTTGATCTGGAAACTAAATAATGGCTAGGTAATTTTAATTGTAATGGCAGGTGAATCACAGCGGTGTTG
ACTGCAGGCGCAGGTAGTGGGGTTTCCTGTTAGTGCAGAACTCGCTTAGCCCTCTCCTG--------TCTCCTGTTCTGG
AACTTTGTATTTTCGCTAAAAA----------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--S--------------S---------S------SS
---SS-SSS-----SS----S-S--------S-------S---S-----SS-S-S-SS----------------------
------------S----------S---------------S--------------------------------S-------
-----------------------------------------S-------------S---------------S------S-
--S-S---S------------------SS--SSSSSSSSS------------------S-S-------------------
-S-----------S----SS-----------------S-------S------S---S----S----SS------S-S---
S---------S-S----------S----S--S--S-----S------------------------S---------S----
------SSS----------------S------------S--S---S--------------------------SS------
-----S--S-----------------S--S---S---S------------------SS------S-------SSS-----
-------------------------------------------S--------------SSS-------------------
------------S-------------------------------------S--S--------------------------
----S----------------S----S--------------------------------SS--------------S----
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
-------S-----------------------------------S-----S------------------------------
S-------------------------------------------------------------S-----------------
----------------------------------S---------------------------------------------
---------------S----------------------------------------------------------------
-------------S------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------S---------------S--------S------------------------S---
------S-------------------------------------------------------------------------
----------------------------S-S-----------------------------------------S-------
-----------------------------------------------------------------------S--------
-----------------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
------------------------------------------S-------------------------------------
-----------S-S-------------------------------------------------------------S----
----------------------S---------------------------------------------------------
---------------------------S----------------------------------------------------
----------------------------------------SS--------------------------------------
-------------------------S-----SSSSS--------------------------S-----------------
------S-------SS-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_844
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------------------------CTATCCCGCCTCGCTACTTG------------------------------------
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>reverse_2786
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-----------------------------------------------------------------AGAAAGCCCACCACT
CACAC---------------------------------------------------------------------------
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