>input_sequence_57110
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ATGGCGACCATGACCAGCGAACAAATGGGGCCACCAGGTTCAGCATCGCCGACTAACCATCAGCCCTTGGCGCTTGCTCA
GGTCAGTTCAATTTTCACCACTCTCAATCTCTCATGTCTAGCATGTACAGAGAGCTGGA---------------------
------------------CTGAACGTGTTCGTTTGGAAAAACAATACTCCCTCCGTTCCCTTTTAGAGATTTCAATATGG
ACTACATATGGAGCAAAATGAGTGAATATACACTCTA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AACTATGTCTATATACGAATTTCGTATGTAGTCCATATTGAAATC
TCTAGAAAGATTTTGGATGTAGTCCATATTGAAATTTCTAGAAAGACTTATATTTAGGAACGGGGGAGTACTGTACTATG
CTTGGTACTCCCTCGGTTCCTAAATATAAGTCTTTGTAGAGATTCCACTATGGACCACATACGGATATATATAGATGCAT
TTTAGAGCGTAGATTCACTCATTTTGCTCCTTATGTGGTCCATAGTAAAATCTTTACAAAGACTTATATTTAGGAACGGA
GGGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GTA
GTATATTCTGGCTAGATAA-TACCATGCCCT-------------------------------------------------
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--------------------CATGCGGCATTCTAGGTCGACTACAGTACAGATGATATA--TTTTCCTGGACAAAAGAAG
CATGATGCATAGATAGATTCGCCTTTACCTTGATATACACAGTATGTGTTTGCTCTGCGTCATGCCACTCACTGCTCATT
T---------TAAGTATGACATCATTCTTTGTTCCAGTCCTGCACTGATA--------CCACCATATTGGGGTTCTGAAC
ATTACAGGATGATTCAACGATCATCAGAATTCCCTTCAGAGCCATACTTGGTTTCGTGTTAGCAGAGCTGGGAATCCCAG
AGGCCGAATACCGTCGCGAGATATTCTACGGAAACAAGATCTGCGTCACCGTGCTCTTCGACGCCTCTACGATCAAAGGA
GCCCCCACCCATATGTCGATATCCGGAACATATTCCACGGACGATGAAGTGGCAGAGGACACAGCTGCTCTTAAAGCCAT
TGAGTCCTTAGAAACCACAGCCAATGTGGTGATCAGGGACTACAGTTACGACAAACTGAAACGGCTGGAGGAAGAATCTG
AGCGCCTGATGGAGCAGTTGGAAGAAGCAAATTATTGCATATCCAAGCTTGTTAGGGGCTGGCTGCTTGCTGTCAGATGT
GTCTGTTCATTCTCTCATAGTCTTAAGCTACTCCTGGGCAAAGTATCATGGATGAGATTATGA-----------------
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-----------------
>chr3D_1_TraesCS3D01G433300
CAGGTCCGCCTGAACTGGACCGCTGGCCCGGTGGGTGACCTGAAGCCGTGGTAGCATCTCTCGCATCGCGGTTTGGAGAT
GTATAAAAACCTTTTTGAAAATAAACATTTTCAGACCTGATATACTTTGCGCCTTTATACCACCATGGTTGCACAGTGCT
GACCATAAGTCAAATGTACATCTTTTTC---AT---CTTCTTTGCTGATAGCTAGTATACCATAGAGCTTCATCTTTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTC-ATTAGTTGATGAAAAATGTCAACCATTGTGCACTTTGTTGGTTA
TATGTGGATATCGTAATGGAAATTGCAAGATTTAAATCCTATCGACTGTCTGATGGTATGTCGACACTCGACACAGGCTT
GCGATCTCCAATTCTCAAGCTTGCGTATACTTTGGTGGTTGACCCGGTCGATGATTTTCATTCCCCCTCTCTATTTCTTT
TTTCTGCATCCATGATGAACAGTTTGGGAAAGAGTGAACTATACTGTAAGAAACTTTTTTTTTCAGAATTCTATTTTTTT
GAATTGCTGTAAGAAACATTTGCTACTATCTCATTTTGGATCC----TGTGAGGCTGATTGGTTGGAGGCTTGAGAGTAC
ACTCTGCAGACTCC------------------------------------------------------------------
--------------------------------------------------------------------------------
-ACAG--------TCCACACCCGTCTTAATGGGCCTGGGTGAACGTTATCCA---------CAAATGCTAGGGC-AAGCC
CATTTCCATCCTCCTCGGCC-TTTGCTAGATAACCACCAG--------GCCTAGCACCGAGCATC-ACCGA--ATCCGCT
GTTTTCCCCTCTTCTTCCCCACTCCCCAGTCTGCTCTTCCGACCCAGGTCCGCGCTGCAGATCCG-------CCGCCTTC
GTCCGTCGAGCACAGGAGGTAAATCGCTTCCGCCACTGGGTCCTAGCTCGCATCCACCGTGTGCTAGATCTCCCCATTCT
TGCTCTGTTTTGATTAGGCGCCACGGGGGAGCT-----CTGAAACAGAGTGACTGCCAATTTCTGCAGGACCTTGGAACC
ATGGCGACCATGACCAGCGAACAAATGGGGCCACCAGGTTCAGCATCGCCGACTAACCATCAGCCCTTGGCGCTTGCTCA
GGTCAGTTCAATTTTCACCACTCTCAATCTCTCATGTCTAGCATGTACAGAGAGCTGGA---------------------
------------------CTGAACGTGTTCGTTTGGAAAAACAATACTCCCTCCGTTCCCTTTTAGAGATTTCAATATGG
ACTACATATGGAGCAAAATGAGTGAATATACACTCTA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AACTATGTCTATATACGAATTTCGTATGTAGTCCATATTGAAATC
TCTAGAAAGATTTTGGATGTAGTCCATATTGAAATTTCTAGAAAGACTTATATTTAGGAACGGGGGAGTACTGTACTATG
CTTGGTACTCCCTCGGTTCCTAAATATAAGTCTTTGTAGAGATTCCACTATGGACCACATACGGATATATATAGATGCAT
TTTAGAGCGTAGATTCACTCATTTTGCTCCTTATGTGGTCCATAGTAAAATCTTTACAAAGACTTATATTTAGGAACGGA
GGGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GTA
GTATATTCTGGCTAGATAA-TACCATGCCCT-------------------------------------------------
--------------------------------------------------------------------------------
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--------------------CATGCGGCATTCTAGGTCGACTACAGTACAGATGATATA--TTTTCCTGGACAAAAGAAG
CATGATGCATAGATAGATTCGCCTTTACCTTGATATACACAGTATGTGTTTGCTCTGCGTCATGCCACTCACTGCTCATT
T---------TAAGTATGACATCATTCTTTGTTCCAGTCCTGCACTGATA--------CCACCATATTGGGGTTCTGAAC
ATTACAGGATGATTCAACGATCATCAGAATTCCCTTCAGAGCCATACTTGGTTTCGTGTTAGCAGAGCTGGGAATCCCAG
AGGCCGAATACCGTCGCGAGATATTCTACGGAAACAAGATCTGCGTCACCGTGCTCTTCGACGCCTCTACGATCAAAGGA
GCCCCCACCCATATGTCGATATCCGGAACATATTCCACGGACGATGAAGTGGCAGAGGACACAGCTGCTCTTAAAGCCAT
TGAGTCCTTAGAAACCACAGCCAATGTGGTGATCAGGGACTACAGTTACGACAAACTGAAACGGCTGGAGGAAGAATCTG
AGCGCCTGATGGAGCAGTTGGAAGAAGCAAATTATTGCATATCCAAGCTTGTTAGGGGCTGGCTGCTTGCTGTCAGATGT
GTCTGTTCATTCTCTCATAGTCTTAAGCTACTCCTGGGCAAAGTATCATGGATGAGATTATGAATGCGGCTCTTCTCAGT
GTCGAA-----------------------------GAAGTGGCTCGTTGACTAAGATCTGTAGGCATGCGATGAGATAAC
TTCCGGAGAAGATCAAAAGCTGCTCTTAGGAAAAGACCCGTTGTATCATGAATGCTAAGTCATATGTAAATTAT------
-----------------------------------------------TGTACTAAGTGATCGTGCTAAAATC--GTACTA
AAACTGCCATTTTGCTTACCAAGTGGTGTTTTCCTTGCA-CCCCATGTGAAATTTGCTCTGCGTAGTTTCAACTCCTATG
GAGTTTATCTACATCAGATGTGTTGAATGAGTCGGTTGTGAGAGACC---------------------------------
----------------------------TTTTGTTGAATTGTCAGTATCAAGTACAGGTG------TTTCCCATGGCAAA
ACGGACTACACATGTGCTGGTTGAAT--ACTGTCATGTACCAGTGCCACCAGGCACATTATCTGCCCAGATATATATTCA
CAGAGCATTTAGAAAGGCCATATACTGTTATTGCTAGCCATCAAACCTTCGCTTTTGAGAAATGACATTCAGACTAGGGT
TTTTACAACAAATCTGTTTGAATCTTTGAGAAATGACGGATTTTTAAGGAGGGACATAGGGGAGAGAATACATCCCTGTG
CCGGTTATCTCCCAGATTAAGGACTCTAAAAATCTGTCTATTGTCTTTATTCCAACAATACAATTGACCTGAAAGTGAGG
TGCCTATAGATATATATGGACAAAATTATAAATTGTCACCTTATATATTTCGTCCATGTCTTCATGTGTTATTCTAACGG
CCTCAATTTCTTTAAATCTTCATTTGAAGTGTCATCTTCATTTCTCGTATGTTGATGACACCTCATGTTTGATCATGCTC
CAATCCATGTCTTTTTTATACAGGTCTTTTATTTCTTAATAATAGAAATTTTTATGCGTAGCCGAAGTATTTGTCTATCA
TATTACAACATTATATATTGTAAATTCAACTGAACGGATGGCTCGAAACCACATGAGCAAGAGACAAATCATAATATAAC
TATAGCCAGTGGTTAAT
>chr3B_1
CAGGCCCGTCTGAACTGGACTGCCGGCCCGGTGGGTGACCTCAAGCCTTGGTAGCATCTCTCGCATCGCGGTTTGGAGAT
GTATAAAAACCTTTTTGAAAATAAACATTTTCAGACCTGATATACTTTGCGCCTTTATACCGCCATGGTTGCACAGTGCT
GACCATAAATCAAATGTACATCCTTTTTTTTAT---CTTCTTTGCTGATAGCTAGTATACCATAGAGCTTCATCCTTTTT
C--------------------TCTTCTTCTTTTTATATTAGTTGATGAAATGTGTCAACCATTGTGCGCTTTGTTTGTTA
TATGTGGATATCATAATGGAAATTGCAAGATTTAAACCCTATCGGCCGTCTGATGTTATAC-------CGGCACATGCTT
GCGATCTCCAGTTGTCGAGCCTGC--------------TTGGCCCAGTAGGTGATTTTCATCCCCTCTCTG-------TT
TTGTTGTATCCCTGATGAACAGGTGAGAAA----------------------------------------------TTGT
CAACTCCTGCAAGAAGCATTGCTATCCCA-----TCTGGATCAGCCGTGTCAGTTTGAGTGCTTGGGGACTTGGGAGTGG
CAATTAGTCATGTACTAGCTGCAGTCTTTGTGTAAATATATT-GCTGATTTCCTAAGGAATAATGTTCAGACGTGTGACC
GAACTGGCCAACAAATGCTTGTTGGCTCTTCTGAAGTTTGGATATCCCGCAGCCTGCTGCACAGGGGAACCACAGACTCC
AGCAGTCCACAGTTCTACACCCATCTAAATGGGCCGGGGTGAAGGTTGTCCAAGGGGAGAGCAAATGGTAGGGCAAAGCC
CATTTCCTTCCTTGTCGGCTGTTTGCTAGATAACCACCACGCGTCCACGCCTACCACCGAGCACCGACCGTGTATCCGCT
GTTTCCCCCTCTCTGCTCTTCAGCGCCGCCGTCGCGGGGAGAA-------------GCAGATCCG-------CTGCCTTC
GCCCGTCGAGCACACGAGGTAAATCGATCTCGGC----------------------------------TCCCCCCATTCT
TGCTCTGT-----TTAGGCGCCACGATGGAGCTCTGAACTGAAACAGAGTGGCTGCCGGTTCCTGCAGGACCTTGGAACC
ATGGCGACCATGACCAGCGAAGAAATGGGGTCACCAGGTTCAGCGTCAGG---------------------GCTTGCTCA
GGTCAGCTCAATATTTACCGCTCTCA--------TGGCTAGCAG--------CTAG------------------------
----------GTACACAGCTTAATGTTTTCGTTTGTAAAAA-AATGCAACACTCG-------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------GTA
GCATATTCTGGCTAGAAGA-TACCAGGCCCT-------------------------------------------------
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--------------------CATGCGGCACTCTAGGTCGACTACAGTCCAGATAATGCC--TTTTCCTGGACAAAAGAAT
CATGGTGCATAGATAGATTCGCTTTTACCTTCAT----ACAGTATACGTTTGCTCTGTGTCATGCCACTCACTGCTCATT
T---------TAAGTATGCCATCATTCTTTGTCCCATTCCTGCACTGGTA--------CCACTATCTTGGGGCTCTGAAC
ATTACAGGATGCTCCGACGATCATCAGAATTCCCTTGAGAGCCATACTTGACATCGTGCTAGCAGAGCTGGGAATCCCAG
AGGCCGAATACTGCCGCGAGATATGCGACGATAACAAGATATGCGTCACCGTGCTTTTCGATGCCTCTACAATCGAAGGA
GCCCCTGCCCATATGTCGATATCCGGAACATATTCCACGGACGATGAAGTGGCAGAGGACACAGCTGCTCTTAAAGCCAT
TGAGTACTTAGAGACCGCAGCCAATGTGGTGATCAGGGACTACAGTTACGACAAACTGAAACGGCTGGAGGAAGAAACTG
AGCGCCTGATGGAGCAGTTGGAAGAAGCAAATTATTGCATATCCAAGCTTGTTAGGGGCTGGCTGCTTGCTGTCAGATGT
GTCTGTTCATTCTCTCACAGTCTTAAGCTACTCCTGGGCAAAGTGTCATGGATGAGATTATGAATGCGGCTCTTCTCGGT
ATCAAAGAAGTGGCTCATTGACTAAGGTATGTAGTGAAGTGGCTCATTGACTAAGGTCTCTAGGCAAGCGATTAGAGAAC
TTCCGGAGAAGATCAAAAGCTAATCTTAGGAAAGGACCCGTTGTATCAGGAATGCTAAGTCATATGCAAATTATTGTATC
GTAAGCAATCGTTCTAAATTATTGTAACGTAAGCAATCGTACTAAAATGTAGTAAGTGATCGTACTAAGTGATTGTACTA
AAACTGCCATTTTTCTTACCAAGTGGTGTTTTCCTTGCACCCCCATGTGAAGTTTGCTCTGGGTAGTTTCAACTCCGATG
GAGTTTATCTTCATCAGATATGTTGAATGAGTCTGTTGGGAGATACTTCCTCCGTCTCAAGACTTTTTTGCAAGCTAAAA
CGTCTATTATAGGACGGAGGGAGTACCTTTTTGTTGAATCGTCAGTATGAAGTAGGAGTACAAGTATTTCCCATGGCAAA
ACGGCCTACACATGTGCTGGTTGAATGTACTGCCATGTACCAGTGCCACCCGGCACATTATCTGCCCAGTTATATATTCA
CAGAGCATTCAGAAAGGCCATATACTGTTATTGATATCCATAAAGCCTTCGC-TTTGAGAAATGACATTCAGACTAGGGT
TTTTACAACAAATCTGTTTGAATCTTTGAGAAATGGCGGATTTTTAAGGAGGGACATAGGGGAGAGAATTCATCCTATGC
CG-GTTCCCTCCCAGATTATGGACTCTAAAAATCTGTCTATTGTCTTTATTCCAACAATACAATTGACCTGAAAGTGAGG
TGCCT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
>chr3A_1
CAGGCCCGTCTGAACTGGACTGCTGGCCCGGTGGGTGACCTGAAGCCGTGGTAGCATCTCTCGCATCGCGGTT-GGAGAT
GTATAAAAACCTTTTTGAAAATAAACATTTTCAGGCCTGATATACTTTGCGCCTTTATACCGCCATGGTTGCACAGTGCT
GACCATAAGTCAAATGTACATCTTTTTTTCTTTTACCTTCTTTGCTGATAGCTAGTATACCATAGAGCTTCATCC-----
----------CTTTTTTTTCCCTTTCTTCTTTTTATATTAGTTGATGAAATGTGTCAACCATTGTGCAGTTTGTTCGTTA
TATGTGGATATGATAATGGAAATTGCAAGATTTAAACCCTATTGACCGTCTGATGTTACAC-------CGGCACATGCTT
GCGATCTCCAGCTATCAAGCCTGC--------------TTGGCCCAGTTGGTGATTTTCATCCCCTCTCTG-------TT
TTGCTGTATCCCTGATGAACAGGAGAGAAA----------------------------------------------TTGC
GAAGTGGTGCAAGAAGCATTGCTATCTCA-----TCTGGATCC----TGTCAGTTTGAGTGACTGGGGACTTGAGGGTGG
CGATTAATCATG---TAGCTGCAGTCTTTGTGTAAAATATATCGCTGATTTCCTAAGGAATAATGTTCAGACGTGTGACC
GAATTGGCCAACAGATGCTTGTTGGCTCTTCTGAAGTTTGGATGTCCTGCTTGTTG--GCAGAGGGAAACCACAGACTCC
AACAG--------TCCACACCCATCTTAATGGGCCTGGGTGAACGTTGTCCAAGGGGAGAACAAATGGTAGGGCAAAGCC
CATTTCCTTCCTTGTCGGCTGTTTGCTAGATAACCACCACGCGTCCACGCCTACCACCGAGCACCGACCGA--ATCCGCT
GTTCCCCCCTTTCCGCTCTTCAGCGCCGCCGTCGCGGGGAGAA-------------GCAGATCTGCTGCCTTCGGCCTTC
GCCCGTCGAGCACACGAGGTAAATCGACCTCGGCTTTGGGTCCTGGCCCGCATCCGCCGTGTGCCAGCTCCCCCCATTCT
TGCTCTGT-----TTAGGCGCCACGAGGGAGCT-----CTGAAACAGAGTGACTGCCGGTTCCTGCAGGACCTTGGAACC
ATGGCGACCATGACCAACGAAGAAATGGGGTCACCGGGTTCAGCACCAGG---------------------GCTTGCTCA
GGCCAGCTCAATATTTACCGCTTTCA--------CGGCTAGCAGTTTACGTTTGGAGAAATAATACAACCCTCGATAGCA
TGAGTGCCGCATATACAGTTTGATGTTTACGTTTGGAGAAATAATACAACCCTCG-------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------GTA
GCATATTCTGGCTACACAAAGACCATGCCCT-------------------------------------------------
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--------------------CATGCGGCACTCTAGGTCGACTACAGTCCAGATGATGTCTTTTTTCCTGGACAAAAGAAT
CATGGTGCGTAGATATATTCGCCTTTACCTTGATGTATGTTTGCA--GTTTGCTCTGTGTCATGCTACCCAGTACCCACT
GCTCGTCTAGTATGTAAGCCGTCATTCTTTGTTCCAGTCCTGCACTGATAGTCTGATACCACTATCTT-GGGCTCTAAAC
ATTACAGGATGCTCCGACGATCATCAGAATTCCCTTGAGAGCCATACTTGACATCGTGCTAGCAGAGCTGGGAATCCCAG
AGGCCGAATACCGTCGCGAGATATGCGACGATAACAAGATCTGCGTCACCGTGCTTTTCGACGCCTCTACAATCAAAGGA
GCCCCCGCCCATATGTCGATATCCGGAACATATTCCACGGACGATGAAGTGGCAGAGGACACAGCTGCTCTTAAAGCCAT
TGAGTACTTAGAAACTGCGGCCAATGTGGTGATCAGGGACTACAGTTACGACAAGCTGAAACGGCTCGAGGAAGAAACCG
AGCGCCTGATGGAGCAGTTGGAAGAAGCAAATGGTGCCATACCCAAGCTTGTTAGGGGCTGGCTGCTTGCTGTCAGATGT
ATGAGTTCATTCTCTCATAGTCTTAAGCTACTCCTGGGCAAAGTATCATGGATGAGATTATGAATGTGGCTATTCTCGGT
ATCGGAAAAGTGGCTCGTTGACTAAGGTCTGTAGTGAAGTGGCTCATTGACTAAGG----------------TAGAGAAC
TTCCGGAGAAGATCAAAAGCTGCTCTTAGGAAAGGACCCGTTGTATCAGGAATTCTAAGTCATATGTAAATTATTGTACT
GTAAGCAATCGTACTAAATTATTGTAATGTAAGCAATCGTACTAAAATGTAGTAAGTGATCGTACTAAGTGATTGTACTA
AAACTGCCATTTTGCTTACCAAGTGGTGTTTTCCTTGCACCCCCATGTGAAGTTTGCTCTGGGTAGTTTCAACTCCTATG
GAGTTTATTTACATCAGATATGTTGAATGAGTCTGTTGGGAGGTACTCCCTCCGTCTCAAGACTTTTTTGCAAGCTAAAA
CGTCTATTATGGGACGGAGGGAGTACCTTTTTGTTGAATCGTCAGTATCAAGTAGGAGTACAAGTATTTCCCATGGCAAA
ACGGCCTACACATGTGCTGGTTGAATGTACTGCCATGTACGAGTGCCACCAGGCACATTATCTGCCCAGTTATATATTCA
CAGAGCATTCAGAAAGGCCATATACTGTTATTGATATCCATAAAACCTTCGC-TTTGAGAAATGACATTCAGACTAGGGG
TTTTACAACAAATCTGTTTGAATCTTTGAGAAATGACGGATTTTTAAGGAGGGACATAGGGGAGAGAATACATCCCTATG
CCAGTTCCCTCCCAGATTATGGACTCTAAAAATCTGTCTACTATCTTTATTCCAACAATACAATTGACCTGAAAGTGAGG
TGCCTATAGACATA------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------
>chr2A_827
CTGAG---------------------------------------------------------------------------
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------------------------------------------------------------ATCCA-------CCGCCTTC
GTCCATCGAGCACATGAGGTAAATCGCCTCCCCCACTTTGTCCTAGATCGCATCCACCGTGTGCTAGATC-CCCCATTCT
TGCTCTGTTTTGATTAGGCGCCACGGGGGAGCT-----TTGAAACAGAGTGGCTGCCAATTTCTGCAGGACCTTGGAACC
ATGGCGACCATGACCAGCGAACAAATGGGGCCATCGGGTTCAGCATCACCGACTGACCATCAGCCCTTGGCGCTTACTCA
GGTCACCTCAATCTTCACCGCTCTCA--------TGGCTAGCAGCTACTGTACTAG------------------------
----------ATAGATAGCTTAATGTTTTCTTCTGGAAAAAGAATACAACACTCA-------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------------ATA
GTATATTCTGGATAGACAAATACTATGCCCT-------------------------------------------------
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--------------------CGTA---CACTCTAGGTCAACTATAGTTCAGATGATATC--TTTTCATGTACAAAAGAAT
CATGGTGCATAGATAGATTCACCTTTACCTTGATATATGTTTGC-----------TCTGTTCTGCCACTCACTGTTCGTC
T-----------AGTATGCCATCATTCTTTGTTCCAGTCCTGCACTGATA--------TCACTATCTTGGGGTTCTAAAC
ATTACAGGATGCTCCGATGATCACCAGAAATCCCTTCAGAGCCATACTT-------------------------------
--------------------------------------------------------------------------------
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-----------------
>chr6D_827
CTGAG---------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------ATCCA-------CGACCTTC
GTCCGTCGAGCACATGAGGTAAATCGCCTCCCCCACTTTGTCCTAGCTCGCATCCACCGTGTGCTAGATC-CCCCATTCT
TGCTCTGTTTTGATTAGGCGCCACGGGGGAGCT-----TTGAAATAGAGTGGCTGCCAATTTCTGCGGGACCTTGGAACC
ATGGCGACCATGACCAGCAAACAAATGGGGCCACCGGGTTTAGCATTACCGACTGACCATCAGCCCTTGGCGCTTGCTCA
GGTCACCTCAATATTCACCGCTCTCA--------TGGCTAGCAGCTACTGTACTAG------------------------
----------ATAGATAGCTTAATGTTTTCTTCTGGAAAAAGAATACAACAACAACAACAAAGCCTTTAGTCCCAAACAA
GTTGGGGTAGGCTAGAGGTGAAACCCATAAGATCTCGCAACCAACTCATGGCTCTGGCACATGGATAGCAAGCTTCCACG
CACCCCTGTCCATAGCTAGCTCTTTGGTGACACTCCAATCCTTCAGGTCTCTCTTAACGGACTCCTCCCATGTCAGATTC
GGTCTACCCCGCCCTCTCTTGACATTCTCCGCACGCTTTAGCCATCCCGTATGCACTGGAGCTTCTGGAGGCCTGCGCTG
GATATGCCCAAACCATGTTAGACGATGTTGGACAAGCTTCTCTTCAATTGGTGCTACCCCAACTCTATCTCGTATATCAT
CATTCCGGACTCGATCCTTCCTCGTGTGGCCACACATCCATCTCAACATACGCATCTCTGCCACACCTAACTGTTGAA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CATGTCGCCTTTTAGTCGGCCAACACTCAGCGCCATACAACATTGCGGGTCGAACCGCCGT
CCTGTAGAACTTGCCTTTTAGCTTTTGTGGCACTCTCTTGTCACAGAGAATGCCAGAAGCTTGGCGCCACTTCATCCATC
CGGCTTTGATTCGATGGTTCACATCTTCATCAATACCCCCATCCTCCTGCAGCATTGACCCCAAATACCGAAAGGTGTCC
TTCTAGGGTACCACCTGGCCATCAAGGCTAACAACCTCCTCCTCCTCACACCTAGTAGTACTGAAACCGCACATCATGTA
CTCTGTTTTAGTTCTACTAAGCCTAAACCCTTTCGATTCCAAGGTTTGTCTCCATAACTCTAACTTCCTATTTACCCTTG
TCCGACTATCGTCAACTAGCACCACATCATCCGCAAAGAGCATACACCAAGGGATATCTCCTTGTATATCCCTTGTGACC
TCATCCATCACCAATGCAAAAAGATAAGGGCTCAAAGCTGACCCCTGATGCAGTCCTATCTTAATCGGGAAGTCATCAGT
GTCGACATCACTTGTTCGAACACTTGTCACAACATTATCGTACATGTCCTTGATGAGGGTAATGTACTTTGCTGGGACTT
TGTGTTTCTCCAAGGCCCACCACATGACATTCCGCGGTATCTTATCATTGGCCTTCTCCAAGTCAATCAACACCATATGC
AAGTTCTTCTTTTGCTCCCTATATCTCTCCATAAGTTGTCGTACCAAGAAAATGGCTTCCATGGTCGACCTCCCAGGCAT
GAAACCAAACTGATTTTTGGTCACGCTTGTCATTCTTCTTAAGCGGTGCTCAATGACTCTCTCCCATAGCTTCATTGTAT
GGCTCATCAGCATAATTCCACGGTAATTAGTACAACTCTGAACATCCCCCTTGTTCTTGAAGATTGGTACTAATATACTC
CGTCTCCATTCTTCTGGCATCTTGTTTGCCTGAAAAATGAGGTTGAAAAGCTTGGGTAGCCATACTATCTCTATGTCCCC
GAGACCTTTCCACACCTCAATGGGGATACAATCAGGGCCCATCGCCTTGCCTCCTTTCATCCTTTTTAAAGCCTCCTTGA
CCTCAGACTCCTGGATTCGCTGCACAAAACGCATGCTGGTCTCATCAAAGGAGTCATCCAGTTCAATGGTAGAACTCTCA
TTCTCCCCATTGAACAACTTGTCGAAGTACTCCCGCCATCTATGCTTAATCTCCTCGTCCTTCACCAAGAGTTGGCCTGC
TCCATCCTTGATGCATTTGACTTGGCCAATATCCCTCGTCTTCCTCTCTCGGATCTTGGCCATCTTATAGATGTCCCTTT
CGCCTTCCTTTGTGCCTAACCGTA---CACTCTAGGTCGACTACAGTTCAGATGATACC--TTTTCCTGGACAAAAGAAT
CATGGTGCATAGATAGATTCACCTTTACCTTGATATATGTTTGC-----------TCTGTTCTGCCACTCACTGGTCGTC
T-----------AGTATGCCATCATTCTTTGTTCCAGTCCTGCACTGATA--------TCACTATCTTGGGGTTCTAAAC
ATTACAGGATGCTTCGACGATCACCAGAATTCCCTTCAGAGCCATACTT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------
>chr1D_827
CTGAG---------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------ATCCA-------CCGCGTTC
GTCCATCGAGGACATGAGGTAAATCGCCTCCCCCACTTTGTCCTAGCTCGCATCCACCGTGTGCTAGAT--CCCCATTCT
TGCTCTGTTTTGATTAGGCGCCACGGGGGAGCT-----TTGAAACAGAGTGGCTGCCAATTTCTGCAGGACCTTGGAACC
ATGGCGACCATGACCAGCGAACAAATGGGGCCACCGGGTTCAGCATCATCGACTGACCAT-AGTCCTTGGCGCTTGCTCA
GGTCACCTCAATCTTCACCGCTCTCA--------TGGCTAGCAGCTACTGTACTAG------------------------
----------ATAGATAGCTTAATGTTTTCTTCTGGAAAAAGAATACAACACTCG-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GTA
GTATATTCTGGATAGACAAATACTATGCCCT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CGTA---CACTCTAGGTCGACTACAGTTCAGATGATATC--TCTTCCTGGACAAAAGAAT
CATGGTGCATAGATAGATTCACCTTTACCTTGATATATGTTTGC-----------TCTGTTCTGCCACTCACTGTTCGTC
T-----------AGTATGCCATCATTCTTTGTTCCAGTCCTGCACTGATA--------TCACTATCTTGGGGTTCTAAAC
ATTACAGGATGCTCCGACGATCACCAGAATTCCCTTCAGAGCCATACTT-------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------
>SNPs
----S---S-----------S-----------------------------------------------------------
-------------------------------------------------------------S------------------
---------------------------S----------------------------------------------S---S-
SSSSSSSSSS---S--S---S-------------S---------------SS-----------------------S----
------------S-----------------------S---------S--------S---SSSSSSSSS--S----S----
----------S--S------S---SSSSSSSSSSSSSS---S---S--S-S----------S---S----SSSSSSSS--
--S---S----S----------S-SS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-
---S-----S-----S----SSSSS--SSSSSSS-S--------------S--SS---S--S----S-S---------SS
SSSS-SSSS-SSSS------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S------------------------S-------------------S------------
-------S----SS-----S-------------------S-------------S---------S----------------
----S-------S-SSS-SSSSS-S--SSSS-SSSSSSSS--SSSSSSSSSSSSSS------------------------
--------------S-------------------------------------------------------S---------
--------------------------------------------------------------------------------
-----------------------------------------------S------S-------------------------
------S-----S------S------SSSSSSSS--S------SS---S-SSS-SS-S----------------------
--------------------S--S--S--------------S-----SS--S---SSS-SSSSSSSSS-S-S-S-S-SSS
SS-SSSSSS--SSSS-SS---SSSSSSSS-S-SSSSS-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-S--S--S-S-----S--S--SSSSSS-SSSS-SSS-SS--SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS---S-S--SSS---SSS--S-S-S-S-S-SSS-SS-----SSSSSSSSS-SS-SSSS-S-S
SSSS----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------S-----------------S----------S--------------------S
----S--------------------------------S-------SS----------S----------------------
------------------S-------------------------------------------S--S--------------
-----------S---S----------------------------------SSS-----S---------------------
------------------------S-S---SS-----------------------S--------------S---------
------S-------------------------------------------------------------------------
-----S----------S-----------------------------------------------------------S---
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
S--------------------------------------------S---------S---S------S-----S---S---
---------------------------------S--------------S-------------------------------
---------------------------------------------------S-----------S----SSSS--------
---------------------------------------------------S---------S------------------
-------------------S-------------S----S----S--S---------------------------------
---------------------------------------S--------------SSS--S--------------------
----S---------------------------S------------------------------------S----------
---------S-----------------------S--S----S----------S---------------------------
-----------------------------------------------------------------------------S--
--S---SS-----------S------------------------------------------------------------
----------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_975
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CCGCT
GTTTTCCCCTCTTCT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
>reverse_3653
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TTCGTGTTAGCAGAGCTGGG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
>forward_1939
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------G
CTTGGTACTCCCTCGGTTC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
>reverse_4078
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AGT
GTCGAAGAAGTGGCTCG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
