>input_sequence_57075
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--------------------------------------------------------ATGGCGCAGCAAGGTGTTGCTTCC
ATACTTGCCGTGGCCCTGGTCCTTGTTGCCTTTGCATCATTTCCCGCAGGTAATA-------------------------
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-------------------------------------------------------------TGCTTACTTAGACGTGTGT
ACGCATGTATATCAA--------CATATTTTGTTGGAATCGTTCATACAAAATTAGCACACAATATTTTTGTATGCAATA
TTGCATGAAAGAGTGCATTAATTAAGCAT---------TAATCGCTTCATTTGTATTTGGGCGGTGATTACATGCTGCAC
ATAA-GTAACAAATCTAAC---TCATTAGCTCTTGC----TGCACATTAATA---TTT-TC-CAGTGCACTCCATCGGCG
TCTGCAACGGCGTGATCGGCAACAACCTGCCGGCGCCGAGCGACGTCGTGAAGCTCTACCAA------------------
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--------------------------------------------------------------------------ACCAAG
GGCATCGATGCCATGCGGATCTACGCGCCGGAGAGCAACGTCCTCAAGGCGCTCAGCGGCACGGGCATCAGCCTCCTCAT
GGACGTCGGCAACGGCGCGCTAACCAGCCTCGCAAACGACCCCTCCGCCGCGCCCGCCTGGGTCAAGGCCAACGTGCAGC
CCTTCCCGGGCGTCTCCTTCCGCTACATCGCCGTCGGCAACGAGGTCACGGACAGCGCCGGCCAGAAGACCATCCTCCCG
GCCATAAAGAACATACAAACGGCGCTCGCGGCCGCCGGCCTCAGCGGCAGCATCAAGGTGTCGACTTCGCTGCGGTTCGA
CGTGGTCAATAACACCTCCCCGCCCTCCAACGGCGTGTTCGCGGACACATCATTCATGGGGCCGATCCTGGACTTCCTGG
CGAGCACCGGCGCACCGCTGCTGGTCAACGTGTACCCCTACTTCGCCTACAAGGGCGACCAGCAGAACATCAAGCTCGAC
TTCGCCACCTTCGTGCCAGGCAGCACCACCGTGACCGA------CAACGGGCTGACGTACAGCAACCTGTTCGACGCCAT
GGTCGACTCCATCTACGCCGCACTGGAGAAAGCCGGCAAGCCCGACGTTAAGGTGGTCATATCCGAGAGCGGGTGGCCGT
CGGCCGGTGGGGTCGGGGCGACGGCGCAGAACGCGCGGGCTTACAACCAGGGATTGATCAACCACGTCCGCGGGGGCACG
CCGAAGAAGCCCAGCTTGCTGGAGACGTACATTTTCGCCATGTTCAACGAGAACCAGAAGACAGGGGATCCGACGGAGAA
CAACTTTGGGCTGTTCAATCCGGACAAGTCGCCGGCCTACTCCGTTACTTTCTAA-------------------------
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>chr3A_1_TraesCS3A01G481500
ATGAAAAGTAAAGTGTGGGTTATAAGATCCGATTTCTCGTAAAACCACTGACTTCACCGTAAATTAGTTCCGTCCGTGAT
AATGCCCGTGCCATAACGTACGCACAGACAAGTGG------CAAGTAACTTAGCTAGGAGTGGCTGGAAGCAACAAAGTG
CGCACTG-TCCA-GGGCCACTATCAGCCCCTGAGACGGGCCAGGTCAGCGGTCATCGCGGCATGGAAATTCCACGAGCCG
GACAAGCTCTCTATGTCGCCATGCATGCCCTCCCAGCGATGGAGCGCGACCTGTACCGGCA-------CCGGCACGTCGA
CGACCCGGACGCAACGCAACGCGTGTACGATGGGTATGGCCGGACTGGATGGTGACACTCGTTCAACCGGTTTCCACAGG
CCAATACACATTCTTTTTTGTTTGAAAAGGGACAGGCCAATACACATACAGGTGCTATGGTAATTGGTGGAAAATGGAAA
CCGATTGTGTTCAAAAAAAAAACAAGGGAAATGGAAACCGATAAGAAACTGCGAATGGGCGAATCAACCTGTGGTTGAGT
TGGTTAGGTGGATAGTGGTATCCCTAACCCACCAGGGTTCAAATCCTGGTGCTCGCATTATTCCTGGATTTATTTCAGGA
TTTCCGGCGATGCGCTTTCAGTGAGAGGAGACGTTCCCGTCGACGACGAGGCGCCTACGGTGACTTCGTAAATCTCAAGA
TGATATGCCGGCTCAGTCTCTCGGAGGTGCTCATAGGGATAGGGTGTGCGTGTGTGCATTCATAGGGATGAGTGTATGCG
TGTGTATATGAGCGCTTGTGTTTGTACTGATGCTCAAAAAAAAACTGCGAATGGTGGACCGGATCGGGAGCGAACGTGTA
TTATTGCGCCAAACTTCCCGATAATGCTGAGATTTTTTGGGGTATATAAGAGACGAGTTTGCTTGGTACATTCATGCAAA
TAAGGTG-ATAGTACCGCACAAGACACCTCAAGATACACAGAGATAGGCGACGAGGATGGCGCAGCAAGGTGTTGCTTCC
ATACTTGCCGTGGCCCTGGTCCTTGTTGCCTTTGCATCATTTCCCGCAGGTAATA-------------------------
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-------------------------------------------------------------TGCTTACTTAGACGTGTGT
ACGCATGTATATCAA--------CATATTTTGTTGGAATCGTTCATACAAAATTAGCACACAATATTTTTGTATGCAATA
TTGCATGAAAGAGTGCATTAATTAAGCAT---------TAATCGCTTCATTTGTATTTGGGCGGTGATTACATGCTGCAC
ATAA-GTAACAAATCTAAC---TCATTAGCTCTTGC----TGCACATTAATA---TTT-TC-CAGTGCACTCCATCGGCG
TCTGCAACGGCGTGATCGGCAACAACCTGCCGGCGCCGAGCGACGTCGTGAAGCTCTACCAA------------------
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--------------------------------------------------------------------------ACCAAG
GGCATCGATGCCATGCGGATCTACGCGCCGGAGAGCAACGTCCTCAAGGCGCTCAGCGGCACGGGCATCAGCCTCCTCAT
GGACGTCGGCAACGGCGCGCTAACCAGCCTCGCAAACGACCCCTCCGCCGCGCCCGCCTGGGTCAAGGCCAACGTGCAGC
CCTTCCCGGGCGTCTCCTTCCGCTACATCGCCGTCGGCAACGAGGTCACGGACAGCGCCGGCCAGAAGACCATCCTCCCG
GCCATAAAGAACATACAAACGGCGCTCGCGGCCGCCGGCCTCAGCGGCAGCATCAAGGTGTCGACTTCGCTGCGGTTCGA
CGTGGTCAATAACACCTCCCCGCCCTCCAACGGCGTGTTCGCGGACACATCATTCATGGGGCCGATCCTGGACTTCCTGG
CGAGCACCGGCGCACCGCTGCTGGTCAACGTGTACCCCTACTTCGCCTACAAGGGCGACCAGCAGAACATCAAGCTCGAC
TTCGCCACCTTCGTGCCAGGCAGCACCACCGTGACCGA------CAACGGGCTGACGTACAGCAACCTGTTCGACGCCAT
GGTCGACTCCATCTACGCCGCACTGGAGAAAGCCGGCAAGCCCGACGTTAAGGTGGTCATATCCGAGAGCGGGTGGCCGT
CGGCCGGTGGGGTCGGGGCGACGGCGCAGAACGCGCGGGCTTACAACCAGGGATTGATCAACCACGTCCGCGGGGGCACG
CCGAAGAAGCCCAGCTTGCTGGAGACGTACATTTTCGCCATGTTCAACGAGAACCAGAAGACAGGGGATCCGACGGAGAA
CAACTTTGGGCTGTTCAATCCGGACAAGTCGCCGGCCTACTCCGTTACTTTCTAA-------------------------
--------------------------------ATGCAAAATTCATGCATTTCAGTCAACCACTCGTCTGTCTGTGTTATG
TTCTAATTTTTCTTATATCTCCAATAAAACAAGTCACAGAAATGGAAAAAGCTGAGTAAATTGCCCTTTGAGAGAAAAAG
CTGAGTAAATTCCACTGTTTTTAATGTCAAATTTTTACCCTCAATAAGGTGAACGTGT----------------------
--------------GTCAAATTTTGCCCCATCTATTCATTTGCTCTCGCACAATGTGACACTACG---------------
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--------------------------GGCCTACTAGAGTGACACGGCGGACCCATCTTTCTGGGAGGGACTAGTATAAAA
TATCACATTAGGTGATGAGATCAATGAGATAATTTAAA---GAAAAATACAAAACATGTTCAAACATTCTCAAAAAAA-T
TACAGACACATATAAATATTTGATGTACAATCTCAAAAAGTTTCAGCTCCAAATCTGACCTACAAATAGAAGGAAAAAAA
AGACAAAATCAGATGCGAACAGTGTCAAATTATTATTCACCCAAAGATGCCACTATTCACATTCAAATTTGTGTTTTTAA
AATCTCTAACTGTACATCGAGTTTTGAGCTGATTTTTTTCGGAGTTGTAGACATACCCCGCAGCTATGTTGTCAAATAAT
T-CAGTTATTGTTGGAATGCCTAAATATGAAATTTTGTGTTTGATCTCATTAATCTCACCTAATGTGAGATACTATACTA
GTCTCCCTTGGCCAAACTCGATGGCAGAAAGTGCACATTCCTCTAACTTGTCCAACAACTCAATCACAATGTTACAATTC
TGAACTAGCATTCACGGCCCAAGTCTAAGCTACGTTGTGTACATGCTTAAGCTTGCAGCCCAGCAACCCGGTAGTGCCCA
GCAAGGGAGTGGGAGAAACACTAACTAATT-------------------------------------------TTTAACT
ATTCTCAAAGAAACAACTAATTTTTAACTGCCCCTGTTGAGAAAGCGTCTGAACGTAACATCCAGTTGTTAAGCCTAAAA
ACCGGCAAAACGGAATGTGATCTGCGGTTGTACGTGT
>chr3B_2
-TGAAAAGTAT-GTTTGGGTTACAAGATCCAATTTCTCGTGAAACCACTGACTTCACTGTAAATTAATTCCGTCCATAAT
AACGCCCGTGCCACAAGGTACGCACAGACAGGTGACACTGACAAGTAACGTAGCTAGT-----------GCAACAAAGTG
CGCACCTATCCA-GGGCCACTATCAGCCCCTGAGACTGGCCAAGTCAGCGGTCATCGCGGCATGGAAATTCCACGAGCCG
GACAAGCTCTGTATGTCGCCATGCATGCCCTCCCAGCGATGGAGCGCGACCTGTACCGGGAGGACCGGCCGGCACGTCGA
CGACCCGGACGCAACGCAACGCGTGTACGATGGATATGGCCGGACTGGATGGTTACACTCGTCCAACCGGTTTCCACAGG
CCAAC-------------------------------CCAATACACATACAGGTACTACGGCAATTGGTGGAAAATG----
---------------------------------GAAACCAATAGGAAACTGCAAAC------------------------
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----------------------------------------------------GGCGGACTGGATCGGGAGCGAACGTGTA
TTATTGCGCCAAACTTCCCGGTAGTGCTGAGATTTTTTTCGGTATATAAGAGACGAGTTTGCTTGGTACATCCATGCAAA
TAAGGGTTATAGTACCGCTCAAGGCACCTCAAGATACACAGTGATAGGCGAGGAGGATGGCCAAGCAAGGTGCTGCTTCC
ATGCTTGCAGTGGCGCTGGTCCTTGCTGCCCTCGCAGCATTTCCACCAGGTAATATATAGGCTTA---------------
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---------------------------------------------------------------CTAATTAAGATGAGTGC
ACGCCTGTATATCAA----TCAATATATTCTGTTGGAATCGTTAATACAGAATTAACACACAATATATTTGG--------
-------------------------------------------------------------------------GCTGTAA
CCAACGCAACAAATCAAAC---TCATTTGCTCTTGC----CGCACATGT------TTT-TT-CAGTGCACTCCATTGGCG
TCTGCAACGGCGTGATCGGGAACAACCTGCCGGCACCGAGCGACGTCGTGAAGCTCTACCAA------------------
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--------------------------------------------------------------------------ACCAAG
GGCATCGACGCCATGCGGATCTACGCGACGGAGAGCAACGTCCTCAAGGCGCTCAGCGGCACGGGCATCAGCCTCCTCAT
GGACGTCGGCAACGGCGCGCTGACCAGCCTCGCCAACGACCCCTCCGCCGCGCCCGCCTGGGTCAAGGCCAACGTGCAGC
CCTTCCCTGGCGTCTCCTTTCGCTACATCGCCGTCGGCAACGAGGTCACAGATAGCGCCGGCCAGAAGACCATCCTCTCG
GCCATGAAGAACATCCAAGGGGCGCTCGTGGCGGCCGGCCTCAGCGGCAGCATCAAGGTGTCGACTTCGGTGCGGTTCGA
CGTGGTCAAGAACACCTCCCCGCCCTCCAACGGTGTGTTCGCGGACGCATCATTCATGGGGCCTATCCTGGACTTCCTGG
CCAGCACCGGCGCACCGCTGCTGGTCAACGTGTACCCCTACTTCGCCTACAAGGGCGACCAGCAGAACATCAAGCTCGAC
TTCGCCACCTTCGTGCCAGGCAGCACAACCGTGACCGA------CAACGGGCTGACGTACACGAACCTGTTCGACGCCAT
GGTCGACTCCATCTACGCCGCGCTGGAGAAAGCCGGCAAGCCCGGGGTTAAGGTGGTCATATCCGAGAGCGGGTGGCCGT
CGGCCGGTGGTGTCGGTGCGACGGCACTGAACGCGCGGGCTTACAACCAGGGGCTGATCAACCACGTCCGTGGGGGCACG
CCGAAGAAGCCCAGCATGCTGGAGACGTACATTTTCGCCATGTTCAACGAGAATCAGAAGACAGGGGATCCGACGGAGAA
CAACTTTGGGCTTTTCAATCCGGACAAGTCGCCGGCCTACTCCATTACTTTCT---------------------------
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>chr3D_133
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----------------------------------------------------------AGTGGCTGGAAGCAACAAAGTG
CGCACTG-TCCAGGGGCCACTATCAGCCCCTGAGACGGGCCAGGTCAGCGGTCATCGCGGCATGGAAATTCCACGAGCCG
GACAAGCTCTGTATGTCGCCATGCATGCCCTCCCAGCGATGGAGCGCGACCTGTACCGGC---ACCGGCCGGCACGTCGA
CGACCCGGACGCAACGCAACGCGTGTAC-------------------GATGGTGACACTCGTTCAACCGCTTTCCACAGG
CAAATACACATTTTTTGTTTTTTGAAAAGGGACAGGCCAATACACATACAGGCGCTATAGCAATTGGTGGAAAATGGAAA
CCGAG-------------------------------------AAGAAACTGCAAAC------------------------
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----------------------------------------------------GGTGGACTGGATCGGGAGCGAACGTGTA
TTATTGCGCCAAACTTCCCGGTAATGCTGAGATTTTTTAGGGTATATAAGGGACGAGTTTGCTTGGTACATTCATGCAAA
TAAGGGTTATAGTACCGCACAAGACACCTCAAGAGACACAGAGATAGGCGAGGAGGATGGCGAAGCAAGGTGGTTCTTCC
ATGCATGCAGTGGCGCTGGTCCTTGTTGCCCTCGCAGCATTTCCAGCAGGTAATATGCTTACTCAGCATACCGATCTACC
AGTTATTGTGCAGTCTGATTCTTCAACTTTCTATCCTGTCTATCCGATTCTAGTTTAGATCGTTCGGCTTATGGTCATTT
AGGGTCAGTTTGGTTCATTTTCCTCGCCCTTATGCCTGGAGGTTCAGGGGTGCCTGGTGTGGACATGGATGCTACAAATT
TCCTGCCTGACCAGGCTAGTACGAAGAGAAAGCATTTGGTTGGTGGCTTGGTGGTTGTTAGCCTGGTAGAGCATTTACTA
TCCATTAGTATATTCTGTGGGGCCATTACTTTATGGTTATTTTATCTAATTTCTAGCCAGGCTGCAGTTAGGGGCCAGGC
TGCATGTCCAGGCATCCCAACTCGGTCTCCTGGGCCGGGCTAATTACAGTACCGGATATCCAGGCCAGGCAGGGTAGAAT
TTTTCCAGGGTAGCATCCAAACACTGATGCATCAAACCCAGGCACAATCTCAGGTCAGGAAAAAAGTGGCGAGGATGCAA
TCCAAACACGCCCTTAGTCTGTGTGGTAGAGTGTTTATTCCACATAAACTTCATAGATCTTAAAATAGAGTTATAGATTG
CCTATCAAGGTATAGGCGCTCGGAGCTGCAGCTGGCCATGTCTGTGTGGCTCGGAAGAGGACCCTATGTATTGAGAAACT
CTTGTCTTTGGATGGTGGCTCTTTCATATTGAAATAAATTATTATTGATCTCGCAAAAAAATGCTTACTAATATGTGTGT
ACGCATGTATATCAAGTTATCAACATATTTTCTTGAAATCGTTCACTGCTCTCCGGGCAGCTATTCCTCACGCGCATATA
TATGCTAATAATTAAACATTTATGAGAGCAATTAATAGTAATTTCTTCGTTTGTATTTGGGCGGTGATTACATGCTGTGC
CTAACGTAACAAATCAAAC---TTATTAGCTCTTGC----CGCACTTTT------TTT-TTCCAGTGCACTCCATCGGGG
TCTGCAACGGCGTGATCGGCAACAACCTGCCGGCACCGAGCGACGTCGTGAAGCTCTACCAA------------------
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--------------------------------------------------------------------------ACCAAG
GGCATCGACGCCATGCGGATCTACGCGCCGGAGAGCAACGTCCTCAATGCGCTCAGCGGCACGGGCATCGGCCTCCTCAT
GGACGTCGGCAACGGCGCGCTAACCAGCCTCGCCAACGACCCCTCCGCCGCGCCCGCCTGGGTCAAGGCCAACGTCCAGC
CCTTCCCTGGCGTCTCCTTCCGCTACATAGCCGTCGGCAACGAGGTCACGGACAGCGCCGGCCAGAAGACCATCCTCCCG
GCCATGAAGAACATACAAGCGGCGCTCGTGGCGGCCGGCCTCAGTGGCAGCATCAAGGTGTCGACTTCGGTGCGGTTCGA
CGTGGTAGAAAACACTTCCCCGCCCTCCAACGGTGTGTTCGCGGACACATCATTCATGGGGCCCATCCTTGAGTTCCTCG
CCAGCACCGGCGCACCGCTGCTGGCCAACGTGTACCCCTACTTCGCCTACAAGGGCGACCAGCAGAACATCAAGCTCGAC
TTCGCCACCTTCGTGCCAGGCAGCACCACCGTGACCGA------CAACGGGCTGACATACACGAACCTGTTCGACGCCAT
GGTCGACTCCATCTACGCCGCGCTGGAGAAAGCCGGCAAGCCCGGGGTTAAGGTGGTCATATCCGAGAGCGGGTGGCCGT
CGGCCGGTGGGGTCGGGGCGACGGCGCAGAACGCGCGGGCTTACAACCAGGGATTGATCAACCATGTCCGCCGGGGCACG
CCGAAGAAGCCCAGCTTGCTGGAGACGTACATTTTCGCCATGTTCAACGAGAATCAGAAGACAGGTGATCCGACGGAGAA
CAATTTCGGGCTGTTCAATCCAGACAAGTCGCCGGCCTACTCCATTACTTTCTGAGTCCGACAAACAAACGCCAGCTGGA
AATTTCCTATATTCGAATAAGCTGCCTGTTAAATGCAAAATGCATGCATTTCAGTCAACCACTCGTCTGTCTGTGTTATG
TTCTAATT-TTCTTATACCTCCAATAAAACAAGTCACAGAAAAGGAAAAGACC---------------------------
--GAGTAAATTACACTTTTTAGAA-GTCATATTTGTACCCTCAATAAGGTGAAGGTGTGTCTCCCCTCAAAAAAATAAAA
TAAGGTGAAGGTGTGTCAAATTTTGCCCCATCTATTCATTTGCTCTCGTACAATATACTCGCTCCATTCCACAATGTAGT
GCATCCGCATTAATTTTCCGAGATCTAAGTTTTCTTTTTAAAACGGAGGCATAAGATTTGCCTCATCTATTAAATAAGGA
GAGAGTAGAGTTTAGAGTTTTACAGGACGCCCCATATAAGCGACATGACAATTACTCACACACAATGATAGTCCCTATTC
TTTGCGCCGGCAGTAACCCATAACTTTGCCTCTCCAATGATGGTTTGGAGGAGAATAGGCGGTGGCACAAATTTTTGCCG
AAATACCCTAGCATTTCGCTCGTTCCAAATGGTCCAAGAGGTGAGCATGATGAGAGAGGACATGGCATGCCAATTAGGGT
TTTGGTCATCGGTTCGCTTGACCCACCACTCCTTGACGGATTCATCAAGATGCCAACCGGGAATGTTGACGTGAGGTAGC
CCAAGCTTCTCGATGATAGATCTTCAAAGCCTAAGTGTGTAACGACACTTGAAGAAGAGGTGTGGCCCTAAGTTCGACCA
TACATTTAACCAACGAGACCGACTGCGGCCTACTAGAGTGACACGTCGGACCCATCTTTCTGGGAGAGACTAGTATAAAA
TATCACATTAGGTGAAGAGACCAATGAGATCATTTTTTTTTGAAAAATACAAAACATGTTCAAACATTCTCAAAAAAAAT
TACAGACACAAATCAATATTTGATGTACAATCTCAAAAAGTTTCAGCTCTGAATCCAACCTACACTAATAGAAACAAAAA
AGCCAGAATTGGATGTGAACAGTGTCAAAATGCTATTCA-CCAAAGATGCCACTATTCACATTCGAATT-GTGTTTTTAA
AATCTCTAACTGTTCATCGAGTTTTGGGCTGGTTTTTTCA-GAGTTGTAGACATACCCTGCAGGTATGTTGTCAAATAAT
TTCAGTTATTTTTGGAATGCCTAAATATGAAATTTTGTGTTTCATCTCATTAATCTCTCCTAACGTGAGGTCCTT-----
GTCTCCCTTGGCCAAACTCGATGGGAGAAAGTGCACATTCCTCTAACTTGTCTAACAACTCGATCACAATGGTGCAATTC
TGAACTAGCATTAATGGCCCTAGTCTAAGTTACGTTGTGAACACGTTTAAGCT-GCAGCCCAGCAACCCGGTAGGGTCCA
GCAAGGGAGAGGGAGAAACACTGCTTAGATCCTGGTGAGAAAGCGTCTGGTGAGAAAGCCTCGCCCACTAATATTTAACT
ATTCCCAAAGAAAAAATTAATTTTTAACTGCCCCTGGTGAGAAAGCGTCTGAACGTAACATCCAGTTGTTAGAGC-----
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>chr3A_1214
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----------------------------------------------------GTATTTGGGCGGTGATTACATGCTGTAC
CTAACGCAACAAATCAAAC---TCATTAGCTCTTGCATGCCGCATTTTT------TTTCTC-CAGTGCACTCCATCGGCG
TCTGCAACGGCGTGCTCGGCAACGACCTGCCGGCGCCGAGCGACGTCGTGAAGCTCTACCAA------------------
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--------------------------------------------------------------------------TCCAAG
GGCATCAACGCCATGCGGATCTACGAGCCGGAGGGCAACGTCCTAAATGCTCTCAGCGGCACGGGCATCGCCGTCCTCAT
GGACGTCGGCAAG---GCGCTACCCAGCCTCGCCTCCAGCAGCTCCGCTGCGGCCGCCTGGGTAAAGGCCAACGTCTCCT
CCTTCCCGGGCGTCTCCTTCCGCTACATCGCCGTCGGCAACGAGGTCATCGACAGCGCCGGCCAGAAGACCATCCTCCCG
GCCATGAGGAACGTACAAGCGGCGCTCGTGGCCGCCGGCCTCGGCGGCAGCGTCAAGGTGTCGACTTCCGTGCGGTTCGA
CGTGGTCAAGGACACATCTCCGCCCTCCAACGGTGTGTTCGCGGACACATCATTCATGGGGCCCATCCTTGAGTTCCTGG
CGAGCACCGGCGCACCGCTGCTGGTCAACGTCTACCCCTACTTCGCCTACGAGAAAGACCCGAAGAACATCCAGCTCAAC
TTCGCTACCTTCGTGCCAGGCAGCACCACCGTGAACGA------CAACGGGCTGACATACACGAACCTCTTCGACGCCAT
GGTCGACTCCATCTACACCGCGCTGGCGAAAGCCGGCAGACCCGGGGTTAAGGTGGTCATATCCGAGAGCGGGTGGCCGT
CGGACGAAGGTTTCGGGGCGACGGCGCAGAACGCGCGTGCGTATAACCAGGGGTTGATCAACCATGTCGGCAACGGCACG
CCCAAACGGCCCGGGCCGTTGGAGACGTACATTTTCGCCATGTTCAACGAGAACAAGAAGGACGGGGAGAAGAGCGAGAA
GCACTTTGGGCTGTTCAATCCGGACATGTCGCCGGCCTACTCCATTACTTTCTGA-------------------------
--------------------------------ATGGAA------------------------------------------
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>chr3B_1214
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----------------------------------------------------GTATTTGGGCGGTGATTACATGCTGTAC
CTAACACAAAAAAGCAAAC---TCATTAGCTCTTGCATGCCGCATTTTTATTTTGTTT-GC-CAGTGCACTCCATCGGCG
TCTGCAACGGCGTGCTGGGCAACGACCTGCCGGCGCCGAGCGACGTCGTGAAGCTCTACCAA------------------
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--------------------------------------------------------------------------TCCAAG
GGCATCAACGCCATGAGGATCTACGAGCCGGAGAGCAACGTCCTCAAGGCGCTCAGCGGCACGGGCATCAGCCTCCTCAT
GGACGTCGGCAAG---GCGCTACCCAGCCTCGCCTCCAGCCGCTCCGCTGCGGCCGCCTGGGTAAAGGCCAACGTCTCCT
CCTTCCCGGGCGTCTCCTTCCGCTACATCGCCGTCGGCAACGAGGTCATCGACAGCGCCAGCCAGAAGACCATCCTCCCG
GCCATGAGGAACTTACAACGGGCGATCGTGGCCGCCGGCCTCGGCGGCAGCGTGAAGGTGTCGACTTCTGTGCGGTTCGA
CGTGGTCACCAACACCTTCCCGCCCTCCGACGGTGTGTTCAAGGACCAATCATTCATGGGGCCCATCCTTGAGTTCCTGG
CGAGCACCGGCGCACCGCTGCTGGTCAACGTCTACCCCTACTTCGCCTACGAGAAGGACCCGCAGAACATCCAGCTCAAC
TTCGCTACCTTCGTGCCAGGCAGCACCACCGTGAACGA------CAACGGGCTGACATACACGAACCTCTTCGACGCCAT
GGTCGACTCCATCTACGCCGCGCTGGAGAAAGCCGGCAAGCCCGGGGTTAAGGTGGTCATATCTGAGAGCGGGTGGCCGT
CGGACGAAGGTTTCGGGGCGACGGCGCAGAACGCGCGGGCGTATAACCAGGGGTTGATCAACCACGTCGGCAACGGCACG
CCCAAACGGCCCGGGCCGTTGGAGACGTACATTTTCGCCATGTTCAACGAGAACCTGAAGGACGGGGAGAAGAGCGAGAA
GCACTTTGGGCTGTTCAATCCGGACATGTCGCCGGCCTACTCCATTACTTTCTGA-------------------------
--------------------------------ATGC--------------------------------------------
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>chr3D_1217
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-------------------------------------------------------TTTGGGCGGTGATTACATGCTGTAC
TTAACGCAACAAATCAAAC---TCATTAGCTCTTGCATGCCGCATTTTT------TTT--C-CAGTGCACTCCATCGGCG
TCTGCAACGGCGTGCTCGGCAGCGACCTGCCGGCGCCGAGCGACGTCGTGAAGCTCTACCAATCCAAGGGCATCAACGCC
ATGCGGATCTACGAGCCGGAGGGCAACGTCCTCAAGGCGCTCAGTGGCACGGGCATCGCCGTCCTCATGGACGTCGGCAA
GGCGCTACCCAGCCTCGCCTCCAGCAGCTCCGCTGCGGCCGCCTGGGTAAAGGCCAACGTCTCCTCCTTCCCGGGCGTCT
CCTTCCGCTACATCGCCGTCGGCAACGAGGTCATCGACAGCGCCGGCCAGAAGACCATCCTCCCGGCCATGAGGAACGTA
CAACGGGCGATCGTGGCCGCCGGCCTCGGCGGCAGCGTCAAGGTGTCGACTTCCGTGCGGTTCGACGTGGTCAAGGACAC
TTCTCCGCCCTCCAACGGTGTGTTCGCGGACACATCATTCATGGGGCCCATCCTTGAGTTCCTGGCGAGCACCGGCGCAC
CGCTGCTGGTCAACGTCTACCCCTACTTCGCCTACGAGAAGGACCCGAAGAACATCCAGCTCAACTTCGCTACTTTCGTG
CCAGGCAGCACCACCGTGAACGACAAGGGGCTGACATACACGAACCTCTTCGACGCCATGGTCGACTCCATCTACGCCGC
GCTGGAGAAAGCCGGCAAGCCCGGGGTTAAGGTGGTCATATCCGAGAGCGGGTGGCCGTCGGACGAAGGTTTCGGGGCGA
CGGCGCAGAACGCGCGGACGTATAACCAGGGGTTGATCAACCACGTCGGCAACGGCACGCCCAAACGGCCCGGGCCGTTG
GAGACGTACATTTTCGCCATGTTCAACGAGAACCTGAAGGACGGGGAGAAGAGCGAGAAGCATTTTGGGCTGTTCAATCC
GGACACCTCGCCGGCCTATTCCATTACTTTCTGAGTGCGACAAGCGTCGGATATTTCGTGTTCGAATAAGCTGCCTGGTA
ATGCAAACTGCATGCATTTCAGTCAACTACTCGTGTGTCTTATGTTTTATTTTCTTAAAAATGTCCCATAAAACACGTCA
CAAAGAAAAGAAAAAAAGGATTGAATTCCAGTTTCTTACATGCCATGTTTTACTCCCAGTTTTCTGTATCAATTTTGCCC
CGTATATACTCCTGCTCCGCATATTCAATTTTTTTAGTTGAGATAGCGCACTTCATTTAATCAACGAGAGTGTTGGGGAT
ACAAAGGTTGCTAGGAGGATCTGAGAGCCACACACGGCGTCCCAAACACAAAGAAAAGAAAATACGTATATCGCAGACTA
TTACAGTCGGCTGTGAAACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTATTGGGATTTTTAGATTGGAAAAAAAATAGAGATTTTGCCCTCCCTAAAAATTGTATTTTTTAATTG
GCCCCCTCAATCTTCCTGGTCTAGCTCCGCGCCTCCGCCACTGACCACCACCCTCAAACCTTGTTGATAGCACCCGTGCC
ACAACGTACACGCAGACAAGCAGCTTACTTTGAGGAAGAGCAACGTACTCTCAGCCCTTGTTGATAGCACTTGCTTGAGG
AAGCAACAAAACGCGCATAGTCGAGGCCACTATCAGTCGCCGAGACGGCCCAGGTTAGCGGTCAGCGCGCCGAGGAAATT
CCACGAGCCAGACAAGCTAGCCATGCCGCGGCTCTCGCTGTATAGATATTGCCAAGCTCTGCGAGCGACCGGTACCGGCA
CGTCGACGACCTCATCGCTCCCGGCCGGGTTGAGTCAATTAATCACCACAACGATCGATATATGGCCGGACAGGATGGTG
ACACCCGTTCAACCGGTTTCCACAGGCCAACCAACAAGTTGCGCATGCACTTGGCACTTAGCACGTACAGTAGGTGCTAT
ACTAGTGGTGGAAAATGGAAACGGATAAGAAATAAAGAAACTCTGGTGGTGGACTCGGTCGACCTGGAACGAACGTCGGA
ACGTGTGTTTGCGCCAAACTGCAGGATACCAGTGCTGAGAACTTGCATATAAAGAGACGACTGTGCCTGGTATAGAATAC
ATACACTGCATTGCGTTGCAACACACACACACACCCAGCTAAGATCGTCGATGGCGAGGCAAGGTGTTGCTCCCATGCTT
ACAGTTGCAGTGGTGCTGGTCGTCCTTGTTGCCTTCGCAGCATTTCCAGCAGGTACTACTATATCCATGATTTTTTAAGA
TGCATCTATACATTTTGTTGTACATACATGAAAATATATATATTTATAGAGCATAAAAAGAGTGCAGTGCTCACCGGGCA
GCTAATCCTCACGGGCGTAAAAAAAAGGCTCATTCCGGCGATAACTAAACATTTATGCCAGGAATCAGATATTACGTACT
AATTGCTTCATTATCGTATTTTTGACGTACACAAGAAATCAGACTCATTAACTCTTGCCGCACATTAATCTTTTCAGCGC
ACTCCGTCGGCGTCTGCAACGGCGTGATCGGCAACAACCTGCCGGCGCCGAGCGACGTCGTGAAGCTCTACAAGTCCAAG
GGCATCAACGCCATGCGGATCTACGAGCCGGAGAGCAAGGTCCTCAAGGCGCTCAGCGGCACGGGCATCGCCCTCCTCAT
GGACGTCGGCAACGGCGCGCTAACCAGCCTCGCCAACGACCCCTCCGCCGCGCCCGCCTGGGTCAAGGCCAACGTCCAGC
CCTACCCGGGCGTCTCCTTCCGCTACATCGCCGTGGGCAACGAGGTCATGGACAGCGCCGGCCAGAAGACCATCCTCCCG
GCCATGAAGAACGTACAAGCGGCGCTCGCGGCCGCCGGCCTCGGCGGCAGCGTCAAGGTGTCCACGTCGTTGCGGTTCGA
CGTGGTCACCGACACCTTCCCGCCCTCCAACGGCGTGTTCGCGGACCTTGACTACATGGGGCCAATCCTGGACTTCCTGG
CGAGCACCGGCGCGCCGCTTCTGGCCAACGTGTACCCCTACTTCGCCTACAAGGGCGACCCGCAGAACATCAAGCTCAAC
TACGCCACCTTCGTGCCTGGC---ACCACCGTGAACGATGACGGCAACGGCCTGACCTACACGAACCTCTTCGACGCCAT
GGTCGACTCCATCTATGCAGCGCTGGAGGACGCCAACAAACCGGGGGTGAAGGTCGTCGTCTCCGAGAGCGGGTGGCCGT
CGGCCAGCGGGTTCGGGGCGACGGAGCAGAACGCGCAGGCGTACAACCAGGGGTTGATCAAACATGTCGGCAATGGCACG
CCCAAGAGGTCCGGGCCGTTGGAGACGTACGTGTTCGCCATGTTCAACGAGAACCTGAAGACAGGGGAACCGACAGAGAA
CCACTTTGGGCTGTTCAATCCGGACAAGTCGCCGGCCTACTCCATTAGTTT-----------------------------
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>chr3A_1251
--------------------------------------------------------------------------------
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----------AAATCAAACTCATTACTAGCTCTTGC----CGCACATTAATC----TT-TT-CAGCGCAGTCTATCGGCG
TCTGCAACGGCGTGATCGGCAACAACCTGCCGGCGCCCAGCGATGTCGTTAAGCTCTACAAA------------------
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--------------------------------------------------------------------------TCCAAG
GGCATCAACGCCATGCGGATCTACGAGCCGGAGAGCAACGTCCTCAAGGCGCTCAGCGGCACGGGCATCGGCCTCCTCAT
GGACGTCGGCAACGGCGCGCTAACCAGCCTCGCCAACGACCCCTCCGCCGCGCCCGCCTGGGTCAAGGCCAACGTCCAGC
CCTACCCGGGCGTCTCCTTCCGCTACATCGCCGTGGGCAACGAGGTCATGGACAGCGCCGGCCAGAAGACCATCCTCCCG
GCCATGAAGAACGTACAGGCGGCGCTCGTGGCCGCCGGCCTCGGCGGCAGCGTCAAGGTGTCCACGTCGTTGCGGTTCGA
CGTGGTCACCGACACCTACCCGCCCTCCAACGGCGTGTTCGCGGACCTTGACTACATGGGGCCCATCGTGGACTTCCTGG
CGAGCACCGGCGCGCCGCTGCTGGCCAACGTGTACCCCTACTTCGCCTACAAGGGCGACCCGCAGAACATCAAGCTCAAC
TACGCCACCTTCATGCCGGGC---ACCACCGTGAACGACGACGGCAACGGCCTGACCTACACCAACCTCTTCTACGCCAT
GGTCGACTCCATCTATGCCGCGCTGGAGGACGCCAACAAACCGGGGGTGAAGGTCGTCGTGTCCGAGAGCGGATGGCCGT
CGGCTAGTGGCTTTGGGGCGACGATGCAGAACGCGCAGGCATACAACCAGGGATTGATCAAACATGTCGGCAATGGCACG
CCCAAGAGGCCCGGGCCGTTGGAGACGTACGTGTTCGCCATGTTCAACGAGAACCTGAAGACAGGGGAACCGACAGAGAA
CCACTTTGGGCTGTTCAATCCGGACAAGTCGCCGGCCTACTCCATTAGCTT-----------------------------
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>chr3B_1275
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-----------------------------------------GCATATTAATC----TT-TT-CAGCGCAGTCTATCGGCG
TCTGCAACGGCGTGATCGGCAACAACCTGCCGGCGCCCAGCGACGTCGTCAAGCTCTACAAA------------------
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--------------------------------------------------------------------------TCCAAG
GGCATCAACGCCATGCGGATCTACGAGCCGGAGAGCAACGTCCTCAAGGCGCTCAGCGGCACCGGCATCGGCCTCCTCAT
GGACGTCGGCAACGGCGCGCTAACCAGCCTCGCCAACGACCCCTCCGCCGCGCCCGCCTGGGTCAAGGCCAACGTCCAGC
CCTACCCGGGCGTCTCCTTCCGCTACATCGCCGTGGGCAACGAGGTCATGGACAGCGCTGGGCAGAAGACCATCCTCCCG
GCCATGAAGAACGTACAAGCGGCGCTCACGGCTGCCGGCCTC---GGCAGCATAAAGGTTTCCACGTCGTTGCGGTTCGA
CGTGGTCACCAACACCTTCCCGCCCTCCAACGGCGTGTTCGCGGACCTTGACTACATGGGACCGATCCTGGACTCCCTGG
CGAGCACCGGCGCGCCGCTTCTGGCCAACGTGTACCCCTACTTCGCCTACAAAGGCGACCCGCAGAACATCAAGCTCAAC
TACGCCACCTTCGTGCCGGGC---ACCACCGTGAACGACGACGGCAACGGCCTGACCTACACGAACCTCTTCGACGCCAT
GGTCGACTCCATCTATGCCGCGCTGGAGGACGCGGACAAACCGGGGATGAAGGTCGTCGTGTCCGAGAGCGGGTGGCCGT
CGGCCAGTGGGTTCGGGGCGACGGCGCAGAACGCGCAGGCGTACAACCAGGGATTGATCAAACATGTCGGCAATGGCACG
CCCAAGAGATCCGGGCCGTTGGAGACGTACCTGTTCGCTATGTTCAACGAGAACCTGAAGACAGGGGAACCGACAGAGAA
CCACTTTGGGCTGTTCAATCCGGACAAGTCGCCGGCCTACTCCATTAGTTTCTGA-------------------------
--------------------------------A-----------------------------------------------
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>chr3A_1293
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----------------------------------------------------------------GTGCATTCCATCGGCG
TCTGCAACGGCGTGATCGGCAACAACCTGCCGGCGCCCAGCGACGTGGTTAAGCTCTACAAA------------------
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--------------------------------------------------------------------------TCCAAG
GGCATCAACGCCATGCGGATCTACGCGCCAGAGAGCAACGTCCTCAAGGCGCTCAGCGGCACGGGCATCGGACTCCTCAT
GGACGTCGGCAACGGCGCGCTCCCCGGCCTCGCCAATGACCCTTCCGCCGCGGCCGCCTGGGTCAAGGCCAACGTCCAGC
CCTACCCGGGCGTCTCCTTCCGCTACATCGCCGTCGGGAACGAGGTCATGGACAGCGACGGCCAGAAGACCATCCTACCG
GCCATGAAGAACCTCCAAGGGGCGCTCGCCGCGGCTGGCCTCGGCGGCCGCGTCAAGGTGTCCACGTCGGTGCGGTTCGA
CGTGGTCACCGACACCTTCCCGCCCTCCAACGGCGTGTTCGCGGACCTTGACTACATGGGGCCCATCCTGGACTTCCTCG
TGAGCACCGGCGCGCCGCTGCTTGTCAACGTGTACCCCTACTTCGCCTACAAGGGCGACCCGCAGAACATCAACCTCAAC
TACGCCACCTTCGCGCCGGGC---ACCACCGTGAACGACGACGGCAACGGTCTGACCTACACCAACCTCTTCGACGCCAT
GGTCGACTCCATCTACGCCGCGCTGGAGGACGCCGAGACGCCCGGGGTGAAGGTCGTCGTGTCCGAGAGCGGGTGGCCGT
CGGCCGGCGGGTTCGGGGCGACGGCGCAGAACGCGCAGGCGTACAACCAGGGGTTGATCAAACATGTCGGCGGGGGCACA
CCCAAGAGGCCTGGGCCGTTGGAGACGTACATGTTTGCCATGTTCAACGAGAACCAGAAGACAGGGGACCCGACAGAGAA
CCACTTTGGGCTGTTCAATCCGGACAAGTCGCCGGCCTACTCCATTAGTTTCT---------------------------
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-------------------------------------
>SNPs
S---------SS--S-------S-------S---------S----------------S--------S--------S-S--
--S----------S--S-------------S---S--------------S-------S----------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
---------------------------------S----------------------------------------------
------------S---S--S----------------------------------------S-------------------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S------------S--SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--------------------
--------------------S-----------------S-----------------------------------------
-----SS--------------------------------------------S----------S---------S-------
--S-----S-----S---------------S-S---S-------S-----------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------S---S------
-------------------------------------------------S----------------S----SSSSSS---
-SSSS-S-S-SSSSSSSS-SSS-S--SSS-------------SS----S----------------------------S--
S--------------S------------------------S----------S----------------------------
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--------S-----------------------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
-----S------------S--------------------------------------------------S----------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
---------------------S----------------------SS----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S---------S--------------------------
-----------------------------------------S--------------------------------------
--------S--------S------------------------S------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS---------S----S---SS--S----S----S------------------S--------------------------
------------------------------------------------S-----S-SSSSSSS-S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S--------------------S-------------
---------------S----S---------S----SSS------------------------------------------
----------S--S-----------------------------------SS----SS-------SSS-S-SSS-S-----
--S--S---SS----S-------------S-SS------S------------------------S----S----------
-------------S------------S----S------SSS-----------------S----S----------------
----------S-------------------------------S--------------S-----S-----S-S--SSSSSS
------------------------S---------------------------S--------S---------S-S------
------------S-S-----S--------S---------S---S-S-------S--------------------S-S---
---------S------------SSS--SS---------------------------------------------------
----S--------S--S-------------------S----------------------------------SSS-SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_754
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------AGTCTCTCGGAGGTGCTCAT----------------------------------------------
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>reverse_5983
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--------------------------------------------------------------ACGGGCCTACTAGAGTGA
CA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------
