>input_sequence_56950
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--------------------------------------ATGGCGTCGCCGCCTCCCCCCGCCTTCGCTCTCGGCTCTCTG
GATGCCGTCCGCCTCTTCGTCCAGGCCAACGGGCGGGTCCACTTCTACGACGCCGTGGAGATCACGTCCATGCGTGTGAG
GGATGCGCGGGAAGCGCTCAGGCTTCTGCCAG---CGCCGCAGCCTGAAGGTGCGGCGAGGCTTCCGCCGCCGTCGCCGC
CGCGCGAAGATGGGGCGAGGCTGATCATCACCAACAACCGCGCCCGCGTCGAGCACCTCGCCACCGCCGGCCTCATGCTG
GAGTCCACGGACATGATCCTGGACGACCTGCTCCGAGAGGTGAACGAGCGACGCGTCAACCAGGAGCATGTCGAGGGGCT
GCGCCGCAACGCGCAATTCATCATCAACAGCGTCGTCCTCCAGGACCCTCTCTTCTTCTCCTTCGTCGACGATGTCGCCA
AGGAGATGCTCGGCGTCGCCGACAAGTTGAAGCCGCCGTGCCGCTACTTCGCGCAGCTGCATCACGCGCTGCAGACCCTC
AAGGCGACCGTGAACGCGCTTCGAGACCGAGACGTCGTTCTCTCGACCCCGAGCCCGACGAGCGACCTGCCCGCGCCAGG
CCCCGCCGTGATCCTGGGCATCGGCGCGCCCTCACCCGCGCCCGCGACAGGCCCCGCCGTGATCCTGGCCATCGGCGCGG
CCTCGCCCGCGCCCGCGCCGGCGACCGGCCCCGCCGCCGAGCCGCTCGCCGTGGACGAGGAGGAGGCGCCCGCGTCCGAG
AAGCCGCTCGCCGTGGATGAGGAGGAGGCGGCCGCGTCCGAGAAGCCGCTCGCCCTGGAGAAGAAGGCGGCCGCGTCCGA
GAAGCCGCTCGCCCTGGAGGAGAAGGCGGCCGCGTCCGAGAAGCCGCTCGCCCTGGAGGAGAAGGCGGCCGCGTCCGAGA
AGCCGCTCGCCCTGGAGGAGAAGGCGGCCGCGTCCGAGACTCCGCTCACCCTGGAGGAGAAGGCGGCCGCGTCCGAGCAG
CCGAAGGCGCTCGCCCTGCAGGAGAAGGCGGCCGCGTCGGAGAAGCAGAAGTCGCTCGCCCTCGAGGAGAAGACCGCCGC
GTCGGAGAAGCTGATGGCGCCCATCAACGCCGACCTCGCCGACCCGGAGGCACTCGACGCCTCAGAGGCCACCGCAGACG
CGTTCCGCCCAGGCTCAACCGATGGGCCCGCTCCGGATGCCGCCGGCGTGGAGGATGATACCGCAGCATGA---------
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>chr5D_1_TraesCS5D01G295100
CAGTAACGACGTCTTTGAATCCCTTCCCTATATATTTTCAAACATGAATTTTCTCTGTAGCCTGAACAAAACATCACTTG
TAAGCAGGAGCGGACAATGATCTGAATCAGCCGAGGAAAGGACTTGTAACAGAGCATTGGGGAAAAGTTCGTTCCATGGT
TGATTATAAAGAACCCTGTCGAGTCCGACCAGGATCATGTGTAGTTGCTCATTACTCCAAGTATGCCTTGTACCATGCAA
ATACATGTCCTTGAGCTCCAGCCAGTTCATAAAGTTTCTGAATGCGTTAATCAGCCTTCTATTGATA-TTACCATTGCTT
CTGTCAGCTGCAGCAGCAA-TCAAGTTGAAATCCCCCACTAAAACTAGTGGATCAGGGGG-GTTCACGCAAAGCAGTTGT
AAGTCATTTAGGAAAGAGATCTTCTCATTGGGAGGCTGCGGACCATACACAATAATCAGGTGCCATGAATCACAA-TAAT
CTTATTTGAGCACTTGAGGGAAATGAAATTTGTTGAGCATTGCACAGAGATGACAGCAACATCATCAGACCAAGCAACTA
GCAGCCCCCCACTAGCACCATCAGACGGTGAGAAGGCAGATTCAGAGAAG------GTGGCACCACAAATCTCAGAT---
-ACTACAACAGGATCAACACTTGATAGCTTGA----------------------------------AATGAGCGACCGAA
CAGCGGTCCTCGTCGCCGGCGAATCTAGGCCTCTGACATTCCAAACTAAGAAGATCCATAGAAACTTGACGACCCCGCTT
TCCTATTACGA---ACTAGCATGTTGTTAATTAACTCAAACTGCTACACAACCGACTTCACACTAGTCCTAGA--CTCCT
AGCTAGTCCTAGCTAGGACTAGCACGGATCGGAGCACGCAAGGCGCGTCCAAGTGCGGCGATAC----GCTGCCCTGCCC
TGC--------CTCCGCCTATAAAAGTAGGCGCGGAGGTAGAGGACCACCG------CCACCACCACAAACCCAAACCCC
CACCTCCCGCAGCGCAGTAC-------GCGCACCAGCAATGGCGTCGCCGCCTCCCCCCGCCTTCGCTCTCGGCTCTCTG
GATGCCGTCCGCCTCTTCGTCCAGGCCAACGGGCGGGTCCACTTCTACGACGCCGTGGAGATCACGTCCATGCGTGTGAG
GGATGCGCGGGAAGCGCTCAGGCTTCTGCCAG---CGCCGCAGCCTGAAGGTGCGGCGAGGCTTCCGCCGCCGTCGCCGC
CGCGCGAAGATGGGGCGAGGCTGATCATCACCAACAACCGCGCCCGCGTCGAGCACCTCGCCACCGCCGGCCTCATGCTG
GAGTCCACGGACATGATCCTGGACGACCTGCTCCGAGAGGTGAACGAGCGACGCGTCAACCAGGAGCATGTCGAGGGGCT
GCGCCGCAACGCGCAATTCATCATCAACAGCGTCGTCCTCCAGGACCCTCTCTTCTTCTCCTTCGTCGACGATGTCGCCA
AGGAGATGCTCGGCGTCGCCGACAAGTTGAAGCCGCCGTGCCGCTACTTCGCGCAGCTGCATCACGCGCTGCAGACCCTC
AAGGCGACCGTGAACGCGCTTCGAGACCGAGACGTCGTTCTCTCGACCCCGAGCCCGACGAGCGACCTGCCCGCGCCAGG
CCCCGCCGTGATCCTGGGCATCGGCGCGCCCTCACCCGCGCCCGCGACAGGCCCCGCCGTGATCCTGGCCATCGGCGCGG
CCTCGCCCGCGCCCGCGCCGGCGACCGGCCCCGCCGCCGAGCCGCTCGCCGTGGACGAGGAGGAGGCGCCCGCGTCCGAG
AAGCCGCTCGCCGTGGATGAGGAGGAGGCGGCCGCGTCCGAGAAGCCGCTCGCCCTGGAGAAGAAGGCGGCCGCGTCCGA
GAAGCCGCTCGCCCTGGAGGAGAAGGCGGCCGCGTCCGAGAAGCCGCTCGCCCTGGAGGAGAAGGCGGCCGCGTCCGAGA
AGCCGCTCGCCCTGGAGGAGAAGGCGGCCGCGTCCGAGACTCCGCTCACCCTGGAGGAGAAGGCGGCCGCGTCCGAGCAG
CCGAAGGCGCTCGCCCTGCAGGAGAAGGCGGCCGCGTCGGAGAAGCAGAAGTCGCTCGCCCTCGAGGAGAAGACCGCCGC
GTCGGAGAAGCTGATGGCGCCCATCAACGCCGACCTCGCCGACCCGGAGGCACTCGACGCCTCAGAGGCCACCGCAGACG
CGTTCCGCCCAGGCTCAACCGATGGGCCCGCTCCGGATGCCGCCGGCGTGGAGGATGATACCGCAGCATGAGTACTCTGC
GATGGGAGGCGAGAACACGTCGAGATTGGAACTCAATTCGAGGTATGGAGGTACATTGGCTGTAGGATGTCGAGATTGAA
ACTCAGTTTCTCCAATTCGAGGTAGTATATTGCCTGCAGGATGTGCAGATTGGAACTCAGTAGTTTGATTGTGGACAATT
GTGCTTGTTTGGTCGTTCTTCTTGTGTGATATCTGATCAGAATGGAAGTTTTTCAACTTTCTGCACAATCACAAATACAT
TTGTCCTAGAGCTCCATGTCGTTTATCACTGTAGAATTGTGCTTGTTTGATATGCTATTCTTACAATTTTTTGTTGTTTG
ATTGTGGATTAGAACAAATCAGCAGGCGTCCTTGCTTGATCTTTGTTCTTGTGTTGTTGTGGGTTAGAACAGCAAGTTTT
TCAACTTGCATGATGATTGACGAAGTGCATGAATTAAATTTCTCATGCACAATCACTTTGACAAATACATCTGTCCTATG
GCTCCATGTTGTGTGTCACTGTAGTATTGGATTTCAGTTTGTTGCATACTCTCAAATTCTCAATGTTCTCCTGTATTATG
TTTTGTCTATCTTCCTTTTACACCAAGCAGCATAGTTGTAAGGTTTGTAACATAAAACTTCAGCCTCAGTGACAATATTG
ATAGACACTCCCTCCAACCCACAATATAACGTCTTATATTATGGGATGGAGGGAGTACATTGTCAGGATCCCGATCCCAA
GTCACACCGATCTAGCCTGTAACACCTCATATCACATTGCGGCCTCACGCACGGAACTCCCACGGGTGTCGCCTTACCAT
GGCCCGGGACCGTTTGCGCCTTTTGGCTCACGTATATGACAATGTCGCTAGCATCCATATGACAGAGAACCCGGGCCGAC
ATGGCTAGTCGTGAACCCAAAGCGGCACTAACGTATGGGGACAGGCATACATGAATCAATATCGAACGTGTCGGTCAGCA
GCGTGTGAATCCGGGCTGTAGCACTGGGCTA
>chr5B_1
CAGTAACGACGTCTTTGAATCCCTTCCCTATATATTTTCAAACATGAGTTTTCTCTGTAGCCTGAACAAAACATTACTTG
TAAGCAGGAGCGGACAATGATCTGAATCAGCCGAGGAAAGGCCTTGTAACAGAGCATTGGGGAAAAGTTCGTTCCATGGT
TGATTATAAAGAACCCTGTCGAGTCCGACCAGGATAATGTGTAGTTGCTCATTACTCCAAGTATGCCTTGTACCATGCAA
ATACATGTCCTTGAGCTCCAACCAGTTCATAAAGTTTCTGAATGCGTTAATCAGCCTTCTATTGATATTTACCATTGCTT
CTGTCAGCTGCAGCAGCAAATCAAGTTGAAATCCCCCACTAAAACTAGTGGATCAGGGGGGGTTCACGCAAAGCAGTTGT
AAGTCATTTAGGAAAGAGATCTTCTCATAGGGAGGCTGCGGACCATACACAATAATCAGGTGCCATGAATCACAA-TAAT
CTAATTTGAGCACTTGAGGGAAATGAAATTTGTTGAGCATTGCACAGAGATGAGAGCAACATCATCAGACCAAGCAACTA
GCAGCCCCGCACTAGCACCATCAGACGGTGAGAAGGCAGATTCAGAGAAGGTGGCAGTGGCACCACAAATCTCAGATGTA
TACTAGAGCAGGATCAACACTTGATAGCTTGATCTCTTGTAGACTCACGCATATACCCCGCTGACTAATGAGCGACCGAA
CAGCGGTCCTCGTCGCCGGCGAATCTAGGCCTCTGACATTCCAAACTAAGAAGATCCATAGAAACTTGACGACCCCGCTT
TCCAATTACGAACTACTAGCATGTTGTTAATTAACTCAAACTGCTACACAACCGACTTCACACTAGTCCTAGCCGCTCCT
AGCTAGTCCT----AGGACTAGCACGGATCGGAGC-------------------GCGGCGATACGGGAGCTGCCCTGCCC
TGCGCCCCTGCCTCCGCCTATAAAAGTAGGCGCGGAGGTAGAGGACCACCGCCACCGCCACCGCCACAAACCCAAACCCC
CACCTCCCGCAGCGCAGCACGCGCACGGCGCACCAGCAATGGCGTCGCGGCCTCCCCCCGCCTTCGCTCTCGGCTCTCTG
GATGCCGTCCGCCTCTTCGTCGAGGCCAACGGCCGGGTCCTCTTCTACCACGCCGTGGAGATCACGTCCGTGCGTGTGAG
GGATGCGCGGGACGCGCTCACGCTTCTGCCAGCGCCGCCGCCGCCTGAAGGTGCGGCGAGGCTTCTGCCGCCGCCGCCGC
CGCGTGAAGATGCGGTGAGGCCGATCATCATCACCAACCGCGCCCGCGTCGAGCACCTCGCCACCGCCGGCCTCATGCTG
CACTCTACGGACATGATCCTGGACGATCTGCTCAAAGAGGTGAACGAGCGACGCGCCATACAGGAGCACGTCAAGTGGCT
GCGCCGCAACGCGGAGGTCATCATCGAGGACGTCGTCCTCCAGGACCCTCTCTTCTTCTCCTTCGTCGACGACGTCGCCA
AGGAGATGCTCGCCGTCGCCGACAAGTTGAAGCCGCCGTGCCGCTACTTCGCGCAGCTGCATCACGCGCTGCAGACCCTC
AAGGCGACAGTGAACGCGCTTCGAGACCGAGACGTCGTTCTCTCGACCCCGAGCTCGACGAGCGACCTGCCCGCGCCTGA
CCCCGCCGTTATCCTGGGCATCGGCGCGCCCTCACCCGCGCCCGCGACAGGCCCCGCCGTGATCCTGGCCATCGACGCGG
CCTCGCCCGCGCCCGCGCCCGCGACCGGCCCCGCCGCCGAGCCGCTCGCCGTGGACGAGGAGGAGGCGCCCGCGTCCGAG
AAGCCGCTCGCCGTGGACGAGGAGGAGGCGCCCGCGTCCGAGAAGCCGCTCGCCCTGGAGGAGAAGGCGGCCGCGTCCGA
CAAGCCGCTCGCCCTGGAGGAGAAGGCGGCCGCGTCCGAGACTCCGCTCACCCTCGAGGAGAAGGCGGCCGCGTCCGAGA
CTCCGCTCACCCTGGAGGAGAAGGCGGCCGCGTCCGAGACTCCGCTCACCCTGGAGGAGAAGGCGGCCGCGTCCGAGCAG
CCGAAGGCGCTCGCCCTGCAGGAGAAGGCGGCCGCATCGGAGAAGCAGCAGTCGCTCGCCCTCGAGGAGAAGACCGCCGC
GTCGGAGAAGCTGATGGCGCCCATCAACGCCAACCTCGCCGACCCGGAGGCACACGACGCCTCAGAGGCCACCGCAGACG
CGTTCCGCCCAGGCTCAACCGATGGGCCCGCTCCGGATGCCGCCGGCGTGGAGGATGATGCCGCAGCGTGAGTACTCTGC
GATGGGAGGCGAGAACACGCCGAGATTGGAACTCAATTCGAGGTATGGAGGTACATTGGCTGTAGGATGTCGAGATTGAA
ACTCTGTTTCTCCAATTCGAGGTAGTATATTGCCTGCAGGATGTGCAGATTGGAACTCAGTAGTTTGATTGTGGACAATT
GTGCTTGTTTGGTCGTTCTTCTTGTGTGATACCTGATCAGAATGGAAGTTTTTCAACTTTCTGCACAATCACAAATACAT
TTGTCCTAGAGCTCCATGTCGTTTATCACTGTAGAATTGTGCTTGTTTGATATGCTATTCTTACAATTTTTTGTTGTTTG
ATTGTGGATTAGAACAAATCAGCAGGCGTCCTTGCTTGATCTTTGTTCTTGTGTTGTTGTGGGTTAGAACAGCAAGTTTT
TCAACTTGCATGATGATTGACAAAGTGCATGAATTAAATTTCTCATGCACAATCACTTTGACAAATACATCTGTCCTATG
GCTCCATGTTGTGTGTCACTGTAGTATTGGATTTCAGTTTGTTGCATACTCTCAAATTCTCAATGTTCTCCTGTATTATG
TTTTGTCTATCTTCCTTTTCCACCAAGCAGCATAGTTGTAAGGTTTGTAACATAAAACTTCAGCCTCAGTGACAAAATTG
ATAGACACTACCTCCAACCCACAATATAACGTCTTATATTATGGGACGGAGGGAGTACAT--------------------
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>chr5A_32
-------------------------------ATATTTTCAAACATGACTCTCCTTTGCGGCCTGAACAAAGCATTACTTG
TAAGAAGGAGCGGACAATGATCTAAATCAGCCAAGGAAAGGCCTTGTAAAAGAGCATTGGGAAAAAGTTCGTTCCAAGGC
TGATTATAAAGAACCCTGTCGAGTCTGACCAAGATAGTGTGTAGTTACTCATTACTCCAAGTATACCTTCTACCATGCAA
GTACATGTCCTTGAGCTCCAATCGGTTCATAAAGTTTCTGAATGCGTTAATCAACCCTCTATTGATATT-ACCAGTGCTT
TTGTCAGCTGCAGCAACAA-TCAAGTTGAAATCGCCCACTAAAATCAGAGGGTCAGGGGA-GTTCATGCACAACAGTTGT
AAGTCATTCAGGAAAGAAATCTTCTCTTTGGAAGGCTGCGGTCCATACACATTAATCAGGTGCCAAGAATCACTAGTAAT
CTTATTTGAGCACTTCAGGGAAATGAAATTTGTTGAGCATTGTACAGAGGTGACAGCAACAACATCAGACCAAGCAACTA
GAAGGCCCCCACTAGCACCATCAGACGGTGAGAAGGCAAATTCAGAGAAG------GTGGCACCACAAATCTCAGAT---
-ACTACAGCAGAATCAACACTTGATAACTTG-------------------------------------------------
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>SNPs
-----------------------------------------------S--------------------------S-----
-----------------------------------------S--------------------------------------
-----------------------------------S--------------------------------------------
--------------------S-----------------------------------------------------------
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-------S------------------------------------------------------------------------
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---S--------------------------------------------------------------------S-------
----------SSSS---------------------SSSSSSSSSSSSSSSSSSS--------------------------
--------------------------------------------------------------S-----------------
-----------------S------------------------------S-------------------------------
---------------------S----------S-------S-------S--------------------S----------
------------S-------S--------------------S-----------------------S-------S------
----S-------S--S-----S--------S--S----------------------------------------------
S-S--S--------------------S------SS--------------------S--SS--------S---S--S----
-------------S-SS--------S-SSS------------------------------------------S-------
------------S-------------------------------------------------------------------
--------S---------------------------------------------S----------------------S-S
---------S----------------------------------------------------------------S-----
-------------------S------------------------------------------------------------
-----------------S------------S-----------------------------S-------------------
S----------------------------------------SS------S----S-------------------------
SS------S-----------------------------------------------------------------------
-----------------------------------S------------S-------------------------------
-------------------------------S---------------------S--------------------------
-----------------------------------------------------------S-------S------------
-------------------S------------------------------------------------------------
----S---------------------------------------------------------------------------
-------------------------------S------------------------------------------------
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---------------------S----------------------------------------------------------
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-------------------S-------------------------------------------------------S----
---------S------------------------------------S-------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_122
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---------------------CTGAATCAGCCGAGGAAAGGA--------------------------------------
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>reverse_1416
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-------------------------------------------------------TCAACCAGGAGCATGTCGAG-----
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>forward_1387
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-------CGGACATGATCCTGGACGAC-----------------------------------------------------
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>reverse_2300
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-----------------------------------------------------------ACCGCAGCATGAGTACTCTG-
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>forward_1436
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--------------------------------------------------------CAACCAGGAGCATGTCGAGG----
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>reverse_3032
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-----------------------------------------------------------------------CGATCCCAA
GTCACACCGAT---------------------------------------------------------------------
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