>input_sequence_56932
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----------------------------------------ATGGCGGAGGCCGCGGCAGCAGCAGAAACCATGGCGGAGG
CCGT---GGCAGCAGCAGAAACCATGGCGGAGGCCGTGACAGCAGCAGCGACGACCCTCCTCCCCGGCCTCCCAGACGAG
ATCGTGGTATGGGAGATCCTCGTCTGCCTCGACCCCAAATCCATCCTCCGCAGCCGCGCCGTCCGCCGCGACTGGCGCTG
CGCCATCACTAACCGCCGATTCCTCCTCTCCCACCATGCCCGCCAGCCCGCCCTTCCCATCCTCTTCAGCGACGGTTACC
GTAACATCCTCACCTTCGATCACAGGGCAGACGCCGCCTCCCAGCTCCACACCGTCGCTCGGCTTGCTCTCTCCCAGCCC
TTCAAGCTCGAGGCCTCCTGCGATGGCCTCCTCATTCTCTCCAAGCCTCCTGAGATGGCTGGCTC---------------
---TCGCGCCCTCCTCACCGTCTGCAACCCGGTCACTCGTCAGCATGCCTCCCTCAGGCGGACACTCAAGGACTTCAACA
TCTTGGGGATGTACCCACACTGCCCTACCGGCAAGTACCGGTTGTTACTGCAAGGGAGGAGCTTCATGGACTCGTCTACT
GACCGAACTGGTTGGTATGTCTTGGAGCTGGGCTCCGATGAGGCACCTAG------------------GTACATTGGGTG
CTCCAAGACCAAATTGCAGTTGGCGATCTTCCATGCGCCTGTCCGGGTCCGTGATAGCTTGCATTGGCACCCAGTGTGTT
ATGCCCCGGTGTATGGGGAGACTGAATTTTT------------TCAGCTTGAAAGAAAAC---TAGTAATTGTATTTGAC
ACGATAGCTGAGTCGTTTCGGCAGATACGTGCTACCCTTGCTC---CCACCAACTACTCATGTATCTTTGAGATGGATGA
CATGCTTGGTATCTATAGCTGTAACAAGGCAAAGAACATTGTCGATATATGGGTGCTGCAGAACTATGAAAGTGAGATTT
GGGACTTAAAGTACCGGGTTCAATTGCCAACCG---------CAGAAATCTGGGGGAAGTTTGAAGGCATTGATGGTGAT
AGCTATTGGTATGTGACAGTTGTTTCGGGTGATGGGGTCGTGCTCTTGCTGGTCAGTTTTGGTAAT--------------
-AGACTGTTTTTTGTTGACACTGGTGGCGAACTGGTTGCTAGCTTCCGAGACTTACATGTTGGTGAACATCGGCTCAAAC
AAACTCTTGTCCCGCATGATTTCTTCATGACACTGGAAGGCTATGCCGTGGATGCTTCACCTTTCATCTGA---------
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----------------------
>chr3A_1_TraesCS3A01G469700
TTATGTTTGGACACCGGAATGGTTTCAGAAAGGTTCGGACATTTTTCGGAGTACCGAGAGGTTACCGGAAACCCCCGGGG
GGGGGTGAATGGGCCTTCATGGGCCCTAGTGGAGAGAGGAGGTAGCGGCCAGGGGGAGGCCCCCCCCCCCAAGCCCAAAC
CGAATTGGACTAGGGTTGGGGGGGGGGGGCTTTCCTTCTTCTCCTCCATCTCTTTCCCTTTCCTCCCTTCTCCGGAAAGG
AAAGGAGGGGGCTGAATCCTACTTGGACCGGGAGTCCAAGTAGGACTCCCCCCTTGGCGCGCCCCCCTTGGGCCGGCCTC
CTCTCCTCCCCCTTTACAGTAAGTAGGGCGGCCCGAGGCCCCCTAGGTCAGTTGTGTCAGCCATGGGCCCTATAGAGAGA
AGGACTCAGAAGACTTGGAGTGTACGGCAAGAAAAACGACGTCTACGAGGACTCCTCCGTAACCCTGACTGACTAGGATA
CTATAAACCCTAGACCCCGATATCCATATAAGGCGGGGCTCGTACGCCTGGGTGGTTTCTCCTCCCCGCTAGTGGTGGAA
GAATTTGTGCTCGCCAAAGGTGGGTTCCTCGATGTAAGTCGTGTGTGCTACTGTCTGCTCCCCTATATTTTTCTCACTCC
CACTCTTGTTAAACTCATCGTTGCAATATCATTATCGGGAAAAAAATATCATTGTTCCATATGAAGATAAACTTAAGATG
GCAAACTCCAAGACGCTGCTGATCAATTGTATATTATCATAACATGAGTTTTTTTAAGGGATAGAACACGAGTAATTAAA
AGGCCTTTTTTCAGAACAAAAGGGATGTTTCAGATTCACTCAGACTGGGGTCTGGGCTGCAGCCCGTTTCAGAACCCTAG
GTTATCCATTCCAGTAGTTTCCTGTAAAAGGCAAAACAAAAACCCCCATTCCCATTCTCCCTCGAAACCCCTCCGCCGCC
ACCACACCCACACCAGCACAACTCCACCCAGCCGGCGACCATGGCGGAGGCCGCGGCAGCAGCAGAAACCATGGCGGAGG
CCGT---GGCAGCAGCAGAAACCATGGCGGAGGCCGTGACAGCAGCAGCGACGACCCTCCTCCCCGGCCTCCCAGACGAG
ATCGTGGTATGGGAGATCCTCGTCTGCCTCGACCCCAAATCCATCCTCCGCAGCCGCGCCGTCCGCCGCGACTGGCGCTG
CGCCATCACTAACCGCCGATTCCTCCTCTCCCACCATGCCCGCCAGCCCGCCCTTCCCATCCTCTTCAGCGACGGTTACC
GTAACATCCTCACCTTCGATCACAGGGCAGACGCCGCCTCCCAGCTCCACACCGTCGCTCGGCTTGCTCTCTCCCAGCCC
TTCAAGCTCGAGGCCTCCTGCGATGGCCTCCTCATTCTCTCCAAGCCTCCTGAGATGGCTGGCTC---------------
---TCGCGCCCTCCTCACCGTCTGCAACCCGGTCACTCGTCAGCATGCCTCCCTCAGGCGGACACTCAAGGACTTCAACA
TCTTGGGGATGTACCCACACTGCCCTACCGGCAAGTACCGGTTGTTACTGCAAGGGAGGAGCTTCATGGACTCGTCTACT
GACCGAACTGGTTGGTATGTCTTGGAGCTGGGCTCCGATGAGGCACCTAG------------------GTACATTGGGTG
CTCCAAGACCAAATTGCAGTTGGCGATCTTCCATGCGCCTGTCCGGGTCCGTGATAGCTTGCATTGGCACCCAGTGTGTT
ATGCCCCGGTGTATGGGGAGACTGAATTTTT------------TCAGCTTGAAAGAAAAC---TAGTAATTGTATTTGAC
ACGATAGCTGAGTCGTTTCGGCAGATACGTGCTACCCTTGCTC---CCACCAACTACTCATGTATCTTTGAGATGGATGA
CATGCTTGGTATCTATAGCTGTAACAAGGCAAAGAACATTGTCGATATATGGGTGCTGCAGAACTATGAAAGTGAGATTT
GGGACTTAAAGTACCGGGTTCAATTGCCAACCG---------CAGAAATCTGGGGGAAGTTTGAAGGCATTGATGGTGAT
AGCTATTGGTATGTGACAGTTGTTTCGGGTGATGGGGTCGTGCTCTTGCTGGTCAGTTTTGGTAAT--------------
-AGACTGTTTTTTGTTGACACTGGTGGCGAACTGGTTGCTAGCTTCCGAGACTTACATGTTGGTGAACATCGGCTCAAAC
AAACTCTTGTCCCGCATGATTTCTTCATGACACTGGAAGGCTATGCCGTGGATGCTTCACCTTTCATCTGACA-------
-------GATGTTTGGCGAGGT------------------TCTTAATATCCTGATGAGTTACAATGTCTAGTAATTGGAT
CAAGTATGAACCTGCTGAGCTCTTCCTTTTGTGTTGTTGTATACAAAGTTATGATCTGAAGTGACTTTTGTTATGTGGTT
GCATGAAATCTATGCTTGTTTCGATATCCTTTCGGGATA----AAGTGACAACTGTTTATGTTGATGTTAAAATTACCAT
GACATTTGGATCTGCTTTTGAAGTATCTTCCAACTGTTCTGCCGCATGTCTCTATTTTCT--------------------
------------AGTGGTCTTCTCAGTACTCATTTTTTTGCTATCTATATATATTCCTCATATATATCCCTATCTCTTGA
ACTGAAGAATTGATTTTACCACTTTATCCACTGGCCTTCTTAATAGTCAGTTTTTT-AGT-TGTTTCCTGTTTCGACCCT
TTGTTGTAGCTGGCAACAAAAAGAGGCAGATTCTCCTCCTTCCTGATTTGCAGGTTGCACCAGACTTCTGGAAGACCTTG
GAGCACTACTGGTTAAA-TTAAATGCTTCCGTATTGCATCATAATAGTCAACTTTTCAATGAAGCGTTCTGTTATAATTA
TGTTCTCTTCGAAACGGTCAGGTAGGTGAAAATTTGGTTGAACGGACAGGAAAGAGCCGACATATGTGTGTCCTTAGTGA
GAATCCGAGACATTCGCTCCACACAGGAGTTGAACTCTGGTTGCTGGGCGCACACTGTGACCCTAGCCAATGGGCTACTG
CCCCGTTTCGAAAATAATTATGTTTTCTTCATGCATCTGGTGCATCTGGTTAGTGTTCTGTATAATTAGGCTTTTCATTA
GCAAAACTGTTCCTGTTTTGACTGTGGTCGTTTGTTTTGTTAATTTCTTATACCTTGACTTGTTCCGAGCAAGCAAGAAA
CAGGTTGACTCTAGGTGAGATCACCTGTGGCAGAAGTGGAACTACTGTTTGTTGTCTTAATTAGGGCAATAATATCAATA
ACCTAATGCTTTATCAATTTCA
>chr3D_948
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-------------------------------------------------------------------CCCCTCCGCCGCC
ACCACACCCACACCTGCACAACTCCACCCAGCCGGCGACCATGGCGGAGGCCGCGGCAGCAGCAGCGACCATGGCCGAGG
CCGCGGCGGCAGCAGGAGCGACCATGGCGGAGGCCGCGGCGGCAGCAGCAGCGACCCTCCTCCCCGGCCTCCCAGATGAG
ATCCTGGTATGGGAGATCCTCGTCCGCCTCGACCCCAAATCCATCCTCCGCAGCCGCGCCGTCCGCCGCGACTGGCGCTG
CGCCACCACCAACCACCGATTCCTCCAGGCCCACCACGCTCGCCAGCCCGCCCTGCCCATCCTCTCCAGCGACGGTTACC
GTAACATCCTCACCTTCGACCACCGGGCCGCCGCCGGCTCCCAGCTCCACACCGTCGCTCGGCTTGCTCTCTCCCAGCCC
TTCAAGCTCGAGGCCTCCTGCGATGGCCTCCTCATTCTCTCCAAGCA---TGAGATGGCTGGCTCTCGCCCTGGCCTCGG
CCCTCGCGCCCTCCTCACCGTCTGCAACCCGGTCACTCGGCAGCATGCCTCCCTCACGCGGACACTCAAGGACTTCAACA
TCTTGGGGATGTACCCACACCGCCCTACCGGCAAGTA-------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------ATAGCTTGCATTGGTACCCAGTGTGTT
ATACCCCAGTGGATGGGGAGACTGCATTTTT------------TCAGCTTGAAAGCAAAC---TAGTAATTGTGTTCGAC
ACAATAGCTGAGTCGTTTCGGCAGATACGTGCTCCCCTTGCTCCTCCCGCCAACTACTCATGTATCTTTGAGATGGATGA
CATGCTTGGTATCTATAGCTGTGACAAGGCCAAGAAAATTGTTGATATATGGGTGCTGCACAACTATGAAAGTGAGGTTT
GGGACTTAAAGTACCGGGTTGATTTGTCAACCA---------CAGAAATCTGGGGGAAGTTTGTAGGCCTTGGTGGTGAT
AGCTATTGGCATGTGACTGTTGTTTCAGGTGATGGTGACGTGCTCTTGCTGGTCAGGTTTGGTCAATCGCAGA------A
CTGGCTATTTTATGTTGACACTAATGGAAAACTGGTTGCTAGCTTCCAAGACTTATATGTTGGTGAAGGTCGGTTCAAAC
AAACTCTTGTTCGGCATGATTTCTTCACGACACTAGAAGGCCATGCCGTGGATGCTTCACCTTTCATCTGACA-------
-------GATGTTGGGTGAGGT------------------TCTTAATATCCTGATGAGCTGCAATGTCTAGGAATTGGAT
CAAGTATGAACCTGCTGATTTCTTCCTTTTGTGTTGTTGTATAAGATGTTG-GATCAGAAGTGACTGTT---ATGTGGTT
GCATGAA----ATGCTTGTTTTGATACCCTTATGGGATG----AAGTGACAACTGTTTATGTTCATGTTAAAATTACCAA
GACATTTGGGTCTGCTTTTGAAGTATTTTCCAACTAATCTGCCGCATGTCTCTATTTTCT--------------------
------------AGTGGTCTTCTCAGTACTCAATTTTTTGTTTAC--TATATATTCCTC----ATATCCATATCTCTTGA
ACTGAAGAATTGATTTTACCACTTTATCCACTGCCCTTCTTAATAGTCAGTTTTTTTAGT-TGTTTCCTGTTTTGACCGT
TTGTTGTAGCTGGCAACAAGAAGAGGCAGATTCTCCTGCTTCCTGATTTGCAGGTCGCACCTGACTTCTGGAAGACCTTG
GAGCACTACTGGTTAAA-TTAAATGCTTCCGTATTGCATCATAATAGTCAACTTTTCAATGAAGTGTTATGTCATAATTA
TGTTTTCTTCGAAACGGTCAGGTAGGTGAAAATTTTGTTGAACGGATAGGAAAGAGCCGACATATGCGCATCCTTTGTGA
GAATCCGAGACATTCGCTCCACACAGGAGTCGAACTCTGGTTGCCGGGTGCACACTGTGACCCTAGCCATTGGGCTACTG
CCCCGTTTCGAAG-TATTTATGTTTTCTTCATGCATCTGGTGCGTCTGGTTAGGTTTGT---------------------
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----------------------
>chr3D_1028
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-------------------------------------------------------------------ACCATGGCGAAGG
AGGC---CGCCGCAGCAGCAACCATGGCGGAGGCCCCGGCGGCAGCAGCGACGACCCTCCTCCCCGGCCTCCCAGATGAG
ATCCTGGTATGGGAGATCCTCGTCCGCCTCGACCCCAAATCCATCCTCCGCAGCCGCGCCGTCCGCCGCGACTGGCGCTG
CGCCACCACCAACCGCCGATTCCTCCTGGCCCACCATGCCCGCGAGCGTGCCCTCCCCATCGTCTCCAGCGACGGTGACC
GTAACATCCTCACCTTCGACCA----------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------TCCGTGATAGCTTGCATTGGCACCCAGTGTGTT
ATACCCCTGTGGATGGGGAGAGTGCATTTTT------------TCAGCTTGAAAGCAAAC---TAGTAATTGTGTTCGAC
ACAATAGCTGAGTCGTTTCGGCAGATCCGTGCTCCCCTTGCTCCTCCCACCAACTACTCATGCATCTTTGAGATGGATGA
CATGCTTGGTATCTATAGCTGTGACAAGGCCAAGAAAATTGTTGATATATGGGTGCTGCACAACTATGAAAGTGAGGTTT
GGGACTTAAAGTACCAGGTTGATTTGACAATAG---------CAGAAATCTGGGGGAAGTTTGAAGGCCTTAATGGTGAT
ACCTATTGGCATGTGACCGTTGTTTCAGGTGATGGTGACGTGCTCTTGCTGGTCAGGTTTGGTCAATCGCAGA------A
CTGGCTGTTTTATGTTGACATTGATGGAAAACTGGTTGCTAGCTTCCAAGACTTATATGTTGGTGAAGGTTGGTTCAAAC
AAACTCTTGTTCGGCATGATTTCTTCACGACACTAGGAGGCCATGCTGTGGATGCTTCACCTTTCGTCTGACG-------
-------GATGTTGGGTGAGAT------------------TCTTAATATCCTGATGAGCTGCAATGTCTAGGAATTCGAT
CAAGTATGAGCCTGCTGATGTCTTCCTTTTGTGTTGTTGTATAAGATGTTATGATCAGAAGTGACTGTT---ATGTGGTT
GCATGAA----ATGCTTGTTTCGATACCCTTTTGGGATG----AAGTCACAACTGTTTATGTTGATGTTAAAATTACCAT
GACATTTGGATCTGCTTTTGAAGTATTTTCCAACTATTTTGTCGCATGTCTCGATTTTCT--------------------
------------AGTGGTCTTCTCAGTACTCAATTTTTTGCTATC--TATATATTCCTCATATATATCCCTATCTCTTGA
ACTGAAGAATTGATTTTACCACTTTATCCACTGGCCTTCTTAATAGTCAGTTTTTT-AGT-TGTTTCCTGTTTCGACCCT
TTGTTGTAGCTGGCAACAAAAAGAGGCATATTCTCCTCCTTCCTGATTTGCAGGTTGCACCAGACTTCTGGAAGACCTTG
GAGCACTACTGGTTAAA-TTAAATGCTTTCGTATTGCATCATAATAGTCAAGTTTTCAATGAAGTGTTCTGTTATAATTA
TGTTTTCTTCGAAACGGTCAGGTAGGTGAAAATTTTGTTGAACGGACAGGAAAGAGCCGACATATGCGCGTCCTTAGTGA
GAATCTGAGACATTCGCTCGACACAGGAGTCGAACTCTGGTTGCCAGGCGCACACTGTGACCCTAGCCATTGGGCTACTG
CCCCGTTTCGAAAATAATTATGTTTTCTTCATACATCTGGTGCATCTGGTTAGTGTTCTGTATAATTAGGATTTTCATTA
GCAAAACTGTTCCTGTTTTGACTGTGGTCCTTTGTTTTGTTAATTTCCTATACCTTGACTTGTTCCGAGCAAGCAAGAAA
CAGGTTGACTCTAGGTGAGATCACCTATGGCGGAAGTGGAACTACTGTTTGTTGTCTTAATTAGGGCAATAATATCAATA
ACCTAATGCTTTATCAATTTCA
>chr3D_1058
ACCATGGC------------------------------------------------------------------------
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-------------------------GGAGGAGGCTGCGGCAGCAGCAGCGGCGCCTCTCCTCGAGGGCCTCCCAGATGAG
ATCGTCCTGTGGGAGATTCTCGTCCGCCTCGACCCCAAATCCCTCCTCCGCTCCCGCGCCGTCCGCCGCGCCTGGCGCTG
CGCCACCTCCACCCGCCGCTTCCTCCTCGCCCACCATGCCCGCCAGCCAACCCTCCCTTTCGTCTGCAGAGACAGATCCC
ATAGCATCCTCGCCTTCGACCAGCGGGCCGCCGCCGATGCCCAGCTCCACACCGTCGCCCGGCTTGCCG------AGCCC
TTCCTTCTTGAGGCCTCCTGCGACGGCCTCCTCGTCCTCTCCAGGTGCACCCGCCGCT----------------------
--------------TCTCCGTCTACAACCCGGCCACGCGTGAGCATGCCTCCCTTAGGTGTCCAGCCTGGGACTTCAACA
TCGTGGGGATGTATCCACATCCACCTACCGGCGAGTACAGGCTGCTACTGCGATGTT---GCGACATGGACATGCCTAAG
GACGAATTTGGCTGCTATGTCCTTCCGTTGGGCTCCGACCAGCCACCGAG------------------GTACATCGGGTG
TCCGGAGAGAGAAGTGGTCTCAGCGCTCTTCAATGTACCTGTCTGGGCGCATCATAGTCTGCATTGGTACCCACTGCCTT
ATCTGAAATAT------GAGACTGAAAGCGCCCAGCTCGAGGATCAGGCTGAACAGCAAC---TGGTAATAGTTTTCGAC
ACCATAGCTGAGTCGTTTCGGCAGATGCGTGCTCCACTTGCTT------CCACCTACTCATCTATCTTTGAGGTGGATGG
CATGCTTGGCATCTATAGCTCTAACAGGGCTAAGGAAATTGTTGATATATGGGTGCTGCAGAACTATGAAAGTGAGATTT
GGGTCTTAAAGTACCGGGTTGAATTGCCGCTCA---------CACAAATCAGGAGGAAGCTTGAAGCCCGTGATGGTGAT
GGCAATTGGTATGTGATCGTTGCTTCGGGTGATGGTGATGTGCTCTTGCTAGTCAGGTTTGGTCAT--------------
-TGGCTGTTTTACGTTGACACTGATGGCAAACTGGTTGCTAGCTTCCAAGACATCAATTTCTATAAATATGGGCTCAAAC
AGACTCTTGTTCCTCATGATTTCTTCACGACACGAGAAGGTTTTGCTGCGGACGCTTCACCATTCATCTGATG-------
-------GC----------------GCCTCAAGGGCCTAGTTTTCGTATCCTCATAAGCTGCAGCGTCTATGAGCTGGAT
CAAGTATGAGCAGGCTCATTTCTTCTTTTTATGTTGATGTATAAAAAGTTATGATAAGAGGTGACTGTT---ATGTGG--
-------ATCTATGCTTGGTTAAATACCCTTTCGGGCTA----AGGTTATGT---CTTGTGTTAATGCTAAACTTATCAA
GCTGTTTGCTCTCCTTTATAACAAA--TTCCAACTGATCCGCCTCATGTCTCTATTTTCTT-GGCTGAGTACTTGCTTTA
TTCTATTTATCTAGTTGTCTTCTCCGTACTGGATGTTGAGCAATT--TTCATG--CCTC----ACATCGTTATTTCTTCA
GCTGAAGAATTGATTTTACCTCTTGATCTAGTGGTCTTTTTAATAGTCAGTTTTTT-TGTGTGTTTCCTGTTTGTACCCT
TTGTTGTATCTGACAATTGGAAGAGGCAGATTTTCCTCTTTGCTGACTTGCAAGCGGTACCTGACTTCTAGAATGCTTTG
GAGAACTGCTGGTTAAA-TTGAATGCTTCCATATTGCATCATAATAGTCAACTTCTCAATGAAGTGTCCTGTTATAATTC
TGTTTTCTTC----------------------------------------------------------------------
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----------------------
>chr3D_1094
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--------------------------------------------------------CTCCTCCACGGGCTCCCAGATGAG
ATCGTGGTATGGGAGATCCTCATCCGCCTCGACCCCAAATCCCTCCTCCGCTGCCGCGCAGTCCGCCGCGCCTGGCGCTG
CGCCACCTCCGCCCGCCGCTTCCTCCTCGCCCACCACGCCCGCCAGCCAACCCTCCCCATCGTCTTCGGCGACAGATACC
GTAACATCCTTGCCTTGGATCACCGGGCCTCCGCTGACGCCCAACTCCACACCATCGCCCGGCTTGACG------AGGAC
TTCATGCTGGAGGCCTCCTGCGATGGCCTCCTCCTCCTCTCCAAGTTTGACCACATTGTTGGCTT---------------
---TCGCACCTACCTCTCCGTCTGCAACCCGGCCACGAGTCAGCATGCCTCCCTGAGGCCACTGTCAGGTTTTG---ACA
TCTTGGGGATGTACCCACACAGCCCTACCGGTGAGTACCGTCTGTTACTGCAACGGATGAACTACATGGACTCGTCTGAA
TATCAAATTGGCTTCTATGTCTTTGGGTTGGGCTCCAACGAGGCACCGAG------------------GTACATCGGGTG
CTCAGAGACCAAATTAGCGTTGGCGTTCTTCAATGTACCTGTCCGGCTGCGTGATAGCTTGCATTGGTACCCACTGGAGT
ACCG---------------GACTGAAAGCGACCATTTGGAGTATGAAGAAGAAAGCAAACTGGTGGTAACAGTATTCGAC
ACCATAGCTGAGTCGTTTCGGCAGATGCGTGCTCCACTTGTTT------CCACCAATTCATCTATCTTTAAGGTGGATGA
CATGCTTGGCATCTGTAACTGTAACCAGGCCTTGGAAATTGTTGATATATGGGTGCTGCAGGACTACCAAAGTGAGGTTT
GGGACTTAAAGTACCGGATTGAATTGCGGCTCGACGAACTCACAAAACTCAGGGGGGAGCTTGAAGGCCTTGATGGTGAT
GGCAATTGGAGTCTGACCGCTGCTTCGGGTGATGGTGACGTGCTCTTGCTGGTCAGTTTCAGTCACTGGAGTTTTGGTCA
CTGGCTGTTTTACGTTGACACTGATGGCGAACTGGTTGCTAGCTTCCAAGACTTATATGCCTGTAAACATCGGTTCAAAC
AAACTCTTGTTCCACATGATTTGTTCACGACACTAGAAGGTCATGCTGTGGGCGCCTCACCACTCATTTGACG-------
-------GGTGCTT-------------CTTAACGGCATAGTTTTCGTATCCTCATAAGCTGCAATGTCTGTGAGTTGGAT
CAAGTATGAGCATGCTGATTTTTTCTC-TTGTGTTGATGTATAAAAGGTTATGATCAGTAGTGACTCTT---ATGTGGTT
ACATAAAATCTATGCTTGTTTCGATATCCTTTCGGGATGCAAGAAGTGACTGCTGCTTGCGTTGATGCTAAAATTACCAA
GCCATTTTGATC---------------------------CGCCTCATGTCTCTGTTTTCTCGGGTTGAGTACTTGCTATA
TTCTATTTATCTAA-TGTCTTCACAGTACTTGATATTTATCAATC--TTTATG--CCTC----ATATCACTATTTCTTTG
ACTGAAGAATTGGTTTTACCTATGGATCTAGTGGTCTTCTTAATAGTCAGTTTTTA-GTG-TGTTTCCTGTTTGTACCCT
TTGCCGTAGCTGACAATGGGAAGTGGCAGATTTTC-TCTTTGCTGACTTGCGAGCGGCACCTGACTTCTAGAATGCTTTG
GGGAACTGCTAGTT-AAATTGAATT-TTCCATATTGCATCATAATAGTCAATTTCTCAAAGAAGTGTCCTGTTATAATTT
TGTTTTCTTC----------------------------------------------------------------------
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----------------------
>chr3B_1127
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---------TGGGAGATCCTCGTCCGCCTCGACCCCAAATCCCTCCTCCGCTTCCGCGCCGTCCGCCGCGCCTGGCACTG
CGCCATCTCCCCCCACCGCTTCCTCCTCGCCCACCACGCCCGCCAGCCAATCCTCCCTTTCGTCTGCAGAGACAGATCCC
ATAGCATCCTCGCCTTCGACCACCGGGCCGCCGCCGATGCCCAGCTCCACACCGTCGCCCGGCTTGCCG------AGCCC
TTCCTTCTCGAGGCCTCCTGCGACGGCCTCCTCGTCCTCTCCAGGTGTGCCCGCCGCT----------------------
--------------TCTCCGTCTACAACCCGGCCACGCGTGAGCATGCCTCCCTCAGGTGTCCAGCCTGGGACTTCAACA
TCGTGGGGATGTATCCACATGCACCTACCGCCGAGTACAGGCTGCTACTGCGATGTT---GCGACCTGGACATGCCTAAG
GACGAATTTGGCTGCTATGTCCTTCCGTTGGGCTCCGACCAGCCACCGTG------------------GTACATCGGGTG
TCCGGAGAGAGAAGTGATCTCAGCGCTCTTCAATGTACCTGTCTGGGCGCGTCATAGTCTGCATTGGTACCCACTGCCTT
ATCTGAAATAT------GAGACTGAAAGCGCCCAGCTCGAGGATCAGGCTGAACAGCAAC---TGGTAATAGTTTTCGAC
ACCATAGCTGAGTCGTTTCGACAGATGCGTGCTCCACTTGCTT------CCACCTACTCATCTATCTTTGAGGTGGATGG
CATGCTTGGCATCTATAGCTCTAACAGGGCAAATGAAATTGTTGATATATGGGTGCTGCAGAACTATGAAAGTGAGATTT
GGGACTTAAAGTACCGGGTTTAATTGCCGCTAA---------CACAAATCAGGAGGAAGCTTGAAGCCCGTGATGGTGAT
GGCAATTGGTATGTGATCGTTGCTTCGGGTGATGATGATGTGCTCTTGCTAGTCAGGTTTGCTCAT--------------
-TGGCTGTTTTACGTTGACACTGATGGCAAACTGGTTGCTAGCTTCCAAGACATCAATTTCTATAAATATGGGCTCAAAC
AGACTCTTGTTCCTCATGATTTCTTCACGACACGAGAAGGTTTTGCTGCGGACGCTTCACCATTCATCTGATG-------
-------GCTGTTGAGTGAGGTGGTGCCTCAAGGGCCTAGTTTTCGTATCCTCATAAGCTGCAGCGTCTATGAGCTGGAT
CAAGTATGAGCATGCTCATTTCTTCTTTTTATGTTGATGTATAAAAAGTTATGATAAGAAGTGACTGTT---ATGTGG--
-------ATCTATGCTTGTTTAGATACCCTTTCGGGCTG----AGGTTATGT---CTTGTGTTAATGCTAAACTTATCAA
GCTGTTTGCTCTCCTTTATAACAAA--TTCCAACTGATCCGCCTCATGTCTCTATTTTCTT-GGCTGAGTACTTGCTTTG
TTCTATTTATCTAGTTGTCGTCTCCCTACTGGATGTTGAGCAATC--TTCATG--CCTC----ACATCATTATTTCTT-A
ACTGAAGAATTGATTTTATCTCTTGATATAGTGGTCTTCTTAATAGTCAGTTTTTA-GTG-TTTTTCCTGTTTGTACCCA
TTGTTGTACCTGACAATTGGAAGAGGCAGATTTTCCTCTTTGCTGACTTGCAAGCGGCACCTGACCTCTAGAATGCTTTG
GAGAACTGCTGGTT-AAATTGAATGCTTCCATATT---------------------------------------------
--------------------------------------------------------------------------------
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----------------------
>chr3A_1489
--------------------------------------------------------------------------------
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---------------------------------------------------------------------GGACTTCAACA
TCTTGGGAATGTACCAACACCGCCCTACCGGTGGGTACCGGCTGTTACTGCAAGGAACGAGCTTCATGGACTCGTCTAGT
GACCGAACTGGCTGTTATGTCTTTAAGCTTCGCTCCGACAAGGCACCTGCTATTTCTCTAGTGACGGAGTACGTTGGGTG
CTCCAAGACCAAATTGGGTTCGGCGATCTTCAAGGCACCTGTCCGGGTGCTTGATAGCTTCCATTGGCGCCCAGTGTATT
ATACCCAGGTGGAGGAAGACACTGAATTTTT------------TGAGACTGAATACAAAT---TTGTAATAGTATTCGAC
ACAATGGCTGAGTCGTTTCGGCAGATCCGTGCTCCCCTTGTTC------CCACCAACTCAAGTATCTTTGAGATGGATGA
CATGCTTGGTATCTATAGCCGCAACAAGGCGAAGAAAATTGTCGATATATGGGTGCTGCAGAACTATGAAAGTGAGGTTT
GGGACTTAAAGTACCGGGTTGAATTGCCAACCG---------CAGAAATCTGGGGGAAGTTTGAAGGCATTGATGCTGAT
AGCTATTGGTATGTGACCGTTGTTTCAGGTGATGGTGTCGTGCTCTTGCTGGTCAGTTTTGGTAAT--------------
-AGACTGTTTTTTGTTGACACTGGTGGCGAACTGGTTGCTAGCTTCCGATACTTACATGTTGGTGAACATCGGCTCAAAC
AAACTCTTGTCCCGCATGATTTCTTCATGACACTGGAAGGCTATGCCGTGGATGCTTCACCTTTCATCTGACG-------
-------GATGTTTGGCGAGGT------------------TCTTAATATCCTGATGAGTTACAATGTCTAGTAATTGGAT
CAAGTATGAGCCTGCTGATTTCTTCCTTTTGTGTTGTTGTATAAAAAGTTATGATCTGAAGTGACTTTTGTTATGTGGTT
GCATGAAATCTATGCTTGTTCCGATATCCTTTTGGGATA----AAGTGACAACTGTTTATGTTGATGTTAAAATTACCAT
GACATTTGGATCTGCTTTTGAAGTATTTTCCAACTGTTCTGCCGCATGTCTCTATTTTCT--------------------
------------AGTGGTCTTCTCAGTACTCAATTTTTTGCTATC--TATATATTCCTCATATATATCCCTATCTCTTGA
ACTGAAGAATTGATTTTACCACTTTATCCGCTGGCCTTCTTAATAGTCAGTTTTTT-AGT-TGTTTCCTGTTTCGACCCT
TTGTTGTAGCTGGCAACAAAAAGAGGCAGATTCTCCTCCTTCCTGATTTGCAGGTTGCACCAGACTTCTGGAAGACCTTG
GAGCACTACTGGTT-AA-TTAAATGCTTCCGTATTGCATCATAATAGTCAACTTTTCAATGAAGTGTTCTGTTATAATTA
TGTTTTCTTCGAAACGGTCAGGTAGGTGAAAATGTTGTTGAACGGACAGGAAAGAGCCGACATATGCGCGTCCTTAGTGA
GAATCCGAGACATTCGCTTCACACAGGAGTCGAACTCTGGTT-CCGGGCGCACACTGTGACCCTAGCCAATGGGCTACTG
CCCCGTTTCGAAAATAATTATGTTTTCTTCATGCATCTGGTGCATCTGGTTAGTGTTCTGTATAATTAGGCTTTTCATTA
GCAAAACTGTTCCTGTTTTGACTCTGGTCCTTTGTTTTGTTAATTTCCTATACCTTGACTTGTTCCGAGCAAGCAAGAAA
CAGGTTCACTCTAGGTGAGATCACCTGTGGCGGAAGTGGAACTACTGTTTGTTGTCTTAATTAGGGCAATAATATCAATA
ACCTAATGCTCTATCAATTTCA
>chr3D_1779
--------------------------------------------------------------------------------
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------------------------------------------------------------------------TATTCGAC
ACCATGGCTGAGTCATTTCGGCAAATTCATGCTCCACTTGTTC------CCACCATGTCAAGTATCTTTGAGATGGATGA
CATGCTTGGCATCTATAGCTATAACAAGGCCATGGAAATTGTTGATATATGGGTGCTGCACAACTATGAAAGTGAGGTTT
GGGACTTAAAGTACCGGGTTGAATTGCCGGTCG---------CAGAAATCATGGGGAAGCTTGAAGGCCTTAATGGCGAT
GGCTATTGGTATGCGACCGTTACTTGTGGCGATGGTGACGTGCTCTTGTTGGTGAGTTTTGGTCAT--------------
-TGGCTATTTTATGTTGACACTGATGGGGTATTGGTTGCTAGCTTCAGTGACTTGAATGCCTGTACACATCGGCTCCAAC
AAACTCTTGTTCCACATGATTTCTTCACGGCACCAGAAGGTTGTGCTATGGACGCTTCACCGTTCATCTGACGCTGTTGA
GTGAGGTGGTGCTT-------------CTTAGCAGCCTAGTCTTTGTATCCTCATGAGCTGCAATGTCCATGGATTGGAT
CAAG-ATGAGCCTGCTGATTTCTTATTTTTGTGTTGAT-----------------CAGAAGTGAC--TTGTTATGTGGTT
GCATGAAAGCAATGCTTGTTTTGATACCCTTTTCCGGCT---GAAGTGACTACCGCTTGTGTTGATGCTAAAATTACCAG
GCCGTTTTGCTTTACTTTTGAAATGTTTGCCAGCTGATCCACCTCATGTTCTCT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
--------------S--------------------------------------------------SS-------------
---S--------------S-----------------S-S-------------------------------------S---
------------------------S-------------------------------------------------------
---------S------------------S-------------------------S-------------------------
-----------------------S----S-S-----S-------------------------------------------
----------------------------------------------S-S-------------------------------
--------------------------------------------------------------------------------
--------------------S--------------------S---------------S--------------------S-
-----------S--S--------S--------------S-----------------------------------------
----------------SS-------------S----S-------------------------------------------
--S--------S-------------------------------------------S--------------------S---
--S------------------------------S----------------------------------------------
------------------------------------S-------------------------------------------
--------------------S-----------------------------------------------------------
-----------------S-----------------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------SS-----------------------S------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------S------------SS---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
----S------------------------------S------------------------------S-S-----------
------------------------------S-------------S-----------------------------------
--------------------------------------------------------------------------------
-----------------------------S-----------------S--------------------------------
-------------------------------S------------------------------------------------
----------------------
>forward_466
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------GAGGACTCCTCCGTAACCCT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>reverse_2098
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AGTTGTTTCGGGTGATGGGG-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>forward_742
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AAACTCCAAGACGCTGCTGA----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>reverse_2587
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CTTCCAACTGTTCTGCCGCA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
