>input_sequence_56927
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---------------------------------------------------------------ATGCGATCCTTCTCATT
TTCATCAATCCCCAACTTGGAAGATCTCAGCATCTCCTCATTTTCCACAAGTCCTAGTGGTGAGAGCCGAAGTTATGGTA
CTGGATATAGCAGAGGTCCTGTGTGCATGGAGAAAGTGCACATGCATCTGATTGACCCTGAAGCTTCAATCTTGCTAAAG
GAGATTGCTGAGCTTATGATCCTTGCTGGCCATGCACCAAACATATGTCGTGATTACGGAGAAACACGCCACCACATGTT
AATGCAATTCCTTTCTCTGCTCGGTGTTCAGATTGAGCAAAAAAGCCACAACAACCCAGCAGCAGCAACTGCTAACGGCG
CATGCAGCATGCAGCTATATGAGAAGAATCAGAAAATGTGGATCCAAGCACTCAGAGTCGTTGTCAGCATAGTCCTCCCT
GAAGAACGCGACGCTTGCGCTCAGATTTTCGGGTGTGATCATAAGGTGGAGGAGGATTGTTTTGCCAGAGCCACCACACG
GTGTACTGGAGAATTGCTCGCAGTTGGAAGTATGATGGCCAGTGTCAAAGTGAATGACCAGCAGTATCATAAAGTTCCCC
TACTTCTACAGATGCATGAAGAATTTACAAAGCTTGAACCGAGTATAAGTGGCCTCTTGTCTGGTGATGCCAAGGGTGTG
ATTAGTGAGCAGGCCAGTATGCTTCTCGGTAAGCTTGGGGAAACCGCATCGAATCTCCTTCTGGAGTTCCTGAATGTATG
TTCCAACCTTGAACCATGCCAAAATACAATGCTTGATGGAGATATCCTGCCATTGACACGACATGTCATGGGTTTTGTCG
AACAACTTAATGAGTACAGTGACACGATCAATCTTATATTATTACTCGTT---------------GTGGATGAGGAGGAG
GAGGACAAAGAGATAACTAAGAGTCCTTGGGAACGCTATATGCTCATGCTGCTCGCACGTTTGCAGGTGAAGGTTGAGGA
GAAAGCTGAATCTTACAAGGATGAGCGCCTGAGGTACATTTTCCTGATGAATAATGCAATGCATGTGCTTAAAGGCTCAG
GGTCTTCCGATCTGAGTATGTCCGTGTGGGACGATTGGAACCGCCAACAGCTTGTCGTACGGGTGGAACGGTATGCGACA
GCTTACCTTCGAGCATCATGGACTGGAGCTCTGTTTCAGTTGAGTGATCAAGTTGTGCCGAGCGACCATATGAGATACGA
AACCAACTGGGTGAAA-----------AAAGAACTTTAA-----------------------------------------
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>chr2B_1_TraesCS2B01G562600
GGGAGGAGCCGCCTGGGGCTTTGCCCGGCGACCTCCTTTAGCGGCGGCGGAGGGGAGGGGGAGGATGGACGTGCCCGGTG
GCGGCGACTAGGGTTTTCACCCGAGCCACCCTAGCGGGAGGGCGACGCGGGCGGAGGGGCCCTAATGGAAAAGATACTAT
ACTCTTTTTTTAATGGCAATAATCTTCATAATCTTCAAGATACTATAATCTTCAAGATACCATTGCCCTAATGGAAAAGA
TACTATGACTTGCACTGCTACTGGCAGATACTATAATTGTTTTTAAGGGCAATAGCAGGGTACTCTGCTTTTTCATTAGG
TAGGGGGGCGGGAGAGAAAACTTTACAAGGACATGTTAGGGGGGAATCCGTTTGCAAGAGCAGTGCTGTACATAAAAGAA
ACTACGACTAAATCTCCCACACCTCCTGAAGGAGGCTAATGTTTTGTCGGATACTATTGGAGGTCTCCACTGTTGGAATA
GTTAGTTTGAGATAGAGTTGTATAGGGATAGATATCTTGTTTAAACCTTGTACCCTTCTCTATCTCTTCTTCTATTATCC
TCCTGTAATGATCGTTCTCTGTAACGAACGATCTCTCTCGATCTCGTCTTGTAAGCCACGACATTGTTTCTATATATACA
AGTGCGGTCCGAGCAAAGGGTTCAACGCTTCCTAATACGTTTCACATCCGCAACATATATATAATCAGTCAGATAATA--
--TAACACATTTAATTTTTTTAAATACCACAATCTCACTAATGAAATATTTCCCTAGAAACTAATCTACCACACTTATAT
CTTGATGCTGATAAAACTATGC------------------TAATTCAGCAAAATTTGGTTATTAGCGAGTTATGCAGGAA
GTACTTGAGTTAACCGCTTGCTTCCCCTGCAGGCTGCCATGGTACATCTTGAGGACGACTTCCACCAAGTTCTTAGTTCG
GGCGCATATTTACA-CCCCCTAGCAGTCTCCAAGATTCACTGCACAACTGCATTGCCCCCTTTATGCGATCCTTCTCATT
TTCATCAATCCCCAACTTGGAAGATCTCAGCATCTCCTCATTTTCCACAAGTCCTAGTGGTGAGAGCCGAAGTTATGGTA
CTGGATATAGCAGAGGTCCTGTGTGCATGGAGAAAGTGCACATGCATCTGATTGACCCTGAAGCTTCAATCTTGCTAAAG
GAGATTGCTGAGCTTATGATCCTTGCTGGCCATGCACCAAACATATGTCGTGATTACGGAGAAACACGCCACCACATGTT
AATGCAATTCCTTTCTCTGCTCGGTGTTCAGATTGAGCAAAAAAGCCACAACAACCCAGCAGCAGCAACTGCTAACGGCG
CATGCAGCATGCAGCTATATGAGAAGAATCAGAAAATGTGGATCCAAGCACTCAGAGTCGTTGTCAGCATAGTCCTCCCT
GAAGAACGCGACGCTTGCGCTCAGATTTTCGGGTGTGATCATAAGGTGGAGGAGGATTGTTTTGCCAGAGCCACCACACG
GTGTACTGGAGAATTGCTCGCAGTTGGAAGTATGATGGCCAGTGTCAAAGTGAATGACCAGCAGTATCATAAAGTTCCCC
TACTTCTACAGATGCATGAAGAATTTACAAAGCTTGAACCGAGTATAAGTGGCCTCTTGTCTGGTGATGCCAAGGGTGTG
ATTAGTGAGCAGGCCAGTATGCTTCTCGGTAAGCTTGGGGAAACCGCATCGAATCTCCTTCTGGAGTTCCTGAATGTATG
TTCCAACCTTGAACCATGCCAAAATACAATGCTTGATGGAGATATCCTGCCATTGACACGACATGTCATGGGTTTTGTCG
AACAACTTAATGAGTACAGTGACACGATCAATCTTATATTATTACTCGTT---------------GTGGATGAGGAGGAG
GAGGACAAAGAGATAACTAAGAGTCCTTGGGAACGCTATATGCTCATGCTGCTCGCACGTTTGCAGGTGAAGGTTGAGGA
GAAAGCTGAATCTTACAAGGATGAGCGCCTGAGGTACATTTTCCTGATGAATAATGCAATGCATGTGCTTAAAGGCTCAG
GGTCTTCCGATCTGAGTATGTCCGTGTGGGACGATTGGAACCGCCAACAGCTTGTCGTACGGGTGGAACGGTATGCGACA
GCTTACCTTCGAGCATCATGGACTGGAGCTCTGTTTCAGTTGAGTGATCAAGTTGTGCCGAGCGACCATATGAGATACGA
AACCAACTGGGTGAAA-----------AAAGAACTTTAAGAGTTTCAATTCGGCACTCGGAGAAATAAGCAGGGTCCAAA
CGACATGGAAAGTGCCCAACCCTCAACTTAGACAACACTTACGGTTAATTATATTGCAGCAAGTTCTTAACGCTTATCGC
ACACATTTAGGAAGGTATGGCTGCTATCTGGGGAAAAATCCAAGCAAGTACGTAAAGTACACTCCTGACGACATAGAGAA
TCATGTTTTGGACCTGTTCGAAGGATAACAAGGATTAGCGGTAAGTAGTAGACACACAAATGCAGGTGCATAGCTGGACC
GAGCAAGGTTGATGCATCAGTACAGTTCTGAAGATGGAGCGGTGGCAGTTGGCGGCGGCGGCCTCTGAGTGCACGCCGGA
CCGGTGAGACCCATGCCCGGCAGGCGTCCTGGATGGGACCTCAGGTCTTAGATGTTAGGTTTGGCTGCGATGTCTGTTTG
GTATTAGGCCCAGGCTATCTGCGCCCCTTCATCAACTGGATAGAGTTGCTTAGACGGCGGCTTTAGTCTTACTGTTGTAT
TCCTTTGTAAGGTCTTGTGAGAATAATTAATAAAGTGGCTGTATGCATCGCCCAGATGCAGAGGCCGGGGGTCATCCTCC
TTTTCTAAAAAAAACAAATGCAGGTGGATGATAATCATACGTGGCAGAGTATGGCCTATTCAGCCT-ATTAATCATGTAC
TAGTGTACATGTACATCTGTAATATATTTTGTGCCTATATATTGATCAATAATTCAGATTTCAGAGCACTAGACACGGAT
AACTGCCTATA--------------------------------CATCATGAGGATCAGGATTTTGTTGTATAAACCATGT
TGTGTTGATATTGGCCAATAGCCGAACCTGCGAATAAATCGCTCCACATCTCGTTCCCTTCTCGGTCCGCCGTCTCACTT
TGTTG-TTTTACAATTGGATCTCTCATGTGCTGGATTTCTG---TCCTGAGTTCAGATAGGTTACATACATGATTGCATG
ATTTGGGCACACATTTGACGTTTAATCAGCTCATTC
>chr2D_691
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--------------------------------------------------CAACATATATATAATCGGTCAGATAATTGG
TCTAACACATCTATTTCTTTTCAATACCACAATCTCACTAATTGAGTATTTCCCTAGAAACTATTCTACCGCACTTATAT
CTTGCTGCTGATAAAACTATGCCATGGAAGATCATCAGACTAATTCAGCAAAATTTGGTCATGTGCGAGTTATGCAGGTT
ATACTTAAATTGACCGCTTAGTTCCCCTGCAGGATGCCATGGTACACCTTGAGGGCGACTTCCGCCAAGTTCTTGGTTCG
GGCACATATTTATACCCCCCAGGCAGTCTCCAAGAGTCACTGCACGGCTGCATTGCCCCCTTTATGCGATCCTTCTCATA
TTCATCAATCCCCAACTTGGAAGATCTCAGCATCTCCTCATTTTCCACAAGTACTAGTGATGAGAGCCGAACATATGGTA
CTGGATATAGCAGAGTTTCTGTGTGCATGGAGAAAGTACACATGTATCTGATTGACCCTGAAGCTTCAATCTTGCTAAAG
GAGATTGCTGAGCTTATGATCCTTGCGGGCCATGCACCAAACATGTGTCGTGCTTACGGAGAAACACGCCACAACATGTT
AATGCAATGCCTTTCTCTGCTCGGTGTTCAGATTGAGGAAAAGAGCCAAAATAACCCAGCAGCAGCAACTGCTAACGGTG
CATGCAGCATGCAGCTGTATGAGAAGAATCAGAAAATGTGGATCCAAGCACTCAGAGTCGTTGTCAGCATAGTCCTCCCT
GAAGAACGCCATGCTTGCGCTCAGATTTTCGGGTGTGATTGTAAGCTGGAGGAGGATTGCTTTGCCGGAGCCATCACGCG
GTGTATTGGACAATTGCTCGCAGTTGGAAGTATGATGACCAATGTCAAAGTGAATGACCAGCAATATCATAAAGTACCCC
TACTTCTACAGATGCATGAGGAATTGGTAAAGCTTCAACCAAGTATAAATGTCCTCTTGTCTGGTGATGCCAAGGGTGTG
ATTAGTGAGCAGGCCAGTATGCTTCTCGATAAGCTTGGAGAAGAA-CATCAAGTCTCCTTCTGGAGTTCCTGAATGTATA
TTCTAACCTTAAACCATGCCAACATAAAGTACTTGATGGAGATATCCTGCCATTGACATGCCATGTCATCATTTTTATTG
AACTACTTGTTGAGTACAATGACACTATCAATCATATATTACCCCGTGTGGAGGACGACGATGAGGGGAAGGGGAAGGAG
GAGAGCACAAAGAGAACTAAGAGTCGCTGGGAACGTTATGTGCTCATGTTGCTCGCTCGTTTGCAGCTGAAGGTTGAGGA
GAATGCTGAGTCTTACGAGGACGAGCGCATGAGGTACATTTTCCTGATGAATAATGCAATGCATGTGCTTAAAGGCTCAG
GGTCTCCCGATTTGAGTATGTCCATGGGGAACGAC---AACCACCAACTGCTTGTCACACGGGTGGAACAGTATGCGACA
GCTTACCTTCGAGCATCATGGACTGGAGCTCTGCTTCAGTTGAGTGATCACGGTGTGTATAAATATTCTGTGAATTTCAG
TCCAGGATTTGTCTCTGAATGGATGAGAAAAAGCATGAAGAATTTCAATTCGATATTCGGAGAAATAAGCAGGGTCCAAA
CGACATGGAAAGTGCCCAACCCTCAACTTAGACAACACTTACGGTTAATTATATTGCAGCAAGTTCTTAGCGCTTATCGC
ACACATTTAGGAAGGTATGGCTGCTATCTGGGGAAAAATCCAAGCAAGTACGTAAAGTACACTCCTGACGACATAGAGAA
TCATGTTTTGGACCTGTTCGAAGGTTAACAAGGATCAGCGGTAAGTAGCAGACACACAAATGGAGGTGGATGGTC-----
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--------------------------------AATCATATGTAGCAGAGTATGGCCTATTCGGCCTCATTAATCATGTAC
TAGTGTACATGTACATCTGTAATGTATTTTGTGCTTATATATTGATCAATGATTCAGATTTCAGAGCACTAGACACAGAC
AACTGCCTATACTGGTGTGGTGCCCATACATATTGCGCGGAGGCATCATGAGGATCAGGATTTTGTTGTATAAACCATGT
TGTGTTGATATTGGCCAATAGCTGGACCTGCGAATAAAGCACTCCACATATCTCTCCCTTCTCGCCCCGCCATCTCACTT
TTGCTCTTTTATAATTGGATCTCTCATGTGTTGGATTTCTGGTTTCCTGAGTTCAGATAGGTTAAATA------------
------------------------------------
>chr2A_819
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----------------------------------------TAATTCAGCAAAATTTGGTCATGTACGTGTTATGCAGGTT
GTACTCGAATTGACCGCTTAGTTTCCCTGCAGGTTGCCATGGTACACCTTGAGGATGACTTCCGCCAAGTTCTTACTTCA
GGCACATATTTATACCCCCCTAACAGTCTCCAAGAATCACTGCACGACTGCATTGCCCCCTTTATGCGATCCTTCTCATT
TTCATCAATCCCCAACTTGGAAGATCTCAGCTTCTCATCATTTTCCACAAGTCCTAGTGGTGAGAGCCGAAGTTATGGTA
CTGGATATAGCAGCGGTCCTGTGTGCATGGAGAAAGTACACATGTATCTGATTGACCCTGAAGCTTCGATCTATCTAAAG
GAGATTGCTGAGCTTATGATACTTGCTGGCCATGCACCAAACATGTGTCGTGATTACGGAGAAACACGCCACAACATGTT
AATGCAATGCCTTTCTCTGCTCGGTGTTCAGATTGAGCAAAAAAGCCACAACAACCAAGCAGAAGCAACTGCCAATGGCG
CATGCAGCATGCAGCTATATGAGAAGAATCAGAAAATGTGGATCCAAGCACTCAGAGTCGTTGTCAGCATAGTCCTCCCT
GAAGAACGCGACGCTTGCGCTCAGATTTTCGGGTGTGATCGTAAGGTGGAGGAGGATTGTTTTGCCAGAGCCACCACAGG
GTGTACTGGACAATTGCTCGCAGTTGGAAGTATGATGACCAATGTCAAAGTGAATGACCAGCAATATCATAAAGTACCCC
TGCTTCTACAGATGCATGAGGAATTGGTAAAGCTTCAACCAAGTATAAATGTCCTCATGTCTGGTGATGCCAAGGGTGTG
ATTAGTGAGCAGGCCAGTTTGCTTCTAGATAAGCTTGGGGAAGAAGCATCAAGTCTCCTTCTGGAGTTCCTGAATGTATA
TTCTAACCTTAAACCATGCCAACATAAAGTACTTGATGGAGATATCCTGCCATTGACACGCCATGTCATCATTTTTATTG
AACTACTTGTTGAGTACAATGACACGATCAATCATATATTACCCCGTGTGGAGGACGACGATGAGGGGAAGGGGAAGGAG
CAGAGCACAAAGAGAACTAAGAGTCGCTGGGAACGTTATGTGCTCATGTTGCTCGCTCGTTTGCAGCTGAAGGTTGAGGA
GAATGCTGAGTCTTACGAGGACGAGCGCATGAGGTACATTTTCCTGATGAATAATGCAATGCATGTGGTTAAAGGCTCAG
GGTCTCCCGATCTGAGTATGTCCATGGGGAACGAC---AACCACCAACAGCTTGTCATACGGGTGGAACAGTATGCGACA
GCTTACCTTCGAGCATCATGGACTGAAGCTCTGCTTCAGTTGAGTGATCACGGTGTGAGTAAATATTCTGTGAATTTCGG
TCCAGGATCTGTCTCTCAATGGATGAGAAAAAGCATGAAGAATTTCAATTCGGCATTCGGAGAAATAAGCAGGGTCCAAA
CGACATGGAAAGTGCCCAACCCTCAACTTAGACAACACTTACGGTTAATTATATTGCAGCAAGTTCTTAACGCTTATCGC
ACACTTTTAGGAAGGTATGACTGCTGTCTGGGAAAAAATCCAAGCAAGTACATAAAGTACACTCCTGACGACATAGAGAA
TCATGTTTTGGACCTGTTCGAAGGTTAACAAGGATCAGCGGTAAGTAGTAGACACACAAATGG-----------------
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---------------------AGGTGGATGATAATCATACGTAGCAGAGTATGGCCTATTCAGCCT-ATTAATCATGTAC
TAGTGTACATGTACATCTGTAATATATTTTGTGCTTATATATTGATCAATGATTCAGATTTCAGAGAAGTAGACACGGAC
AACTGCCTATACTGGTGTGGTGTC--TACATATTGCACCGACACATCATGAGGATCAAAATTTTGTTGTACAAACCCTGT
TGTGTTGATATTGGCCAATAGCCGAACTTGCGAATAAAGTACTCCACATATCTCTCCCTTCTCGCCCCGCCATCTCACTT
TTGCTCTTTTATAATTGGATCTCTCATGTGTTGGATTTCTGGTTTCCTGAGTTCAGATAGGTTACATA------------
------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S----------S--
----------S--S--S----S--------------------SS-S-----------------S------S---------
----S------------------------------------------------------S--SS--------------SS
--------S--S-------SS------------S------------S----------------S----------------
---S--------S----------------------S---------S----------------------------------
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-------------------------------------S------S-----------------------------------
--------------------------------------------S---------------------------S-------
--------S-----------------------------------------------------------------------
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----------------------------------------S---------------------------------------
----------S--------------------------S---S---------------------S-----------S----
-------------------S-----SSS-------S----S-------S--S----------------------------
----------------------------S-------------SSS-----S-S--------------------------S
---S------S-----------S---S-S-S-----------------------------S--------SSS----S-S-
---S----SS--------S--------------S-------SSS-SS--S----------------S-S-S-S-S-----
---SS--S-S---S-----------SS--------S---S--------S-------S---------S-------------
---S-----S------S----S------S---------------------------------------------------
-----S-----------------S--S--S----SSSS----S-------------S------------S----------
---------------------------------S----------------S-S----SSS-SSS-SSS-S---SS-S--S
SS-SSSS-SS--SSSS--------------S-S-S-S----S-------------S------------------------
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------------------------S----------S--------------------------S-----S--S-SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS---------------------S-------------------------------------
----------------------------------S---------------S----------------------------S
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--------------------------------------S-S--------S--SS----------SS-----S--------
-SSSS------S------------------S-------------------------------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_654
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--------------------------------------------------------------------------TATACA
AGTGCGGTCCGAGC------------------------------------------------------------------
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>reverse_1890
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-------------------------------------------------TGTGGATGAGGAGGAGGAGG-----------
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>forward_1709
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---------CAGGCCAGTATGCTTCTCGG---------------------------------------------------
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>reverse_2554
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-------------------------------------------------------------------------CTGGACC
GAGCAAGGTTGAT-------------------------------------------------------------------
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