>input_sequence_56897
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-------------------ACTTCCTCCTTCTCCTCTGCAA-----------CTTGCAAGGACACGATCCCTCTGTTTCG
CTGTACAG-AGCAGAGACACGTC----GATCCATCCATCCATGGCGGCCACCGTCGGCAACGGCAAGGACAGGGAGGAGG
CGGTGGTCCACCCGAACCCGAGGCAGGGGGGCAAGCTCTTGTCCAGGCTGCTGACGAGGGACAGCTCTGCCGCCGCGCCG
TCCTTCAGGGTCTACTACGGCGTGGCCTCCGCCGGCGCGGTGCCGTTCCTGTGGGAGTCGCAGCCGGGCACGCCCAAGAA
CGCCGTCTCCGACACGACGATGCCGCCGCTCACGCCTCCGCCGTCCTACTACGCCGC---CGGCGCCGGGGCCGCCAAGA
AGCACGCGGCGCGCAAGGCCGC---CGCCGGGAGCAACAGGTTCAGGCCGTCCCGCATCCTGGGCTCCATCCTCATGGCG
ACGCGGAGGCGGGGCCGGACGACGC---CGTCGGGCTCGCCCACCTCGTCCTTCTCCTCCGCGTCG------------AC
CTCGTCATCGTCATCCTCCTACTCGGCATCTTCGTTCCGCCGTACCACGCAGTCGCCGATGCGGGCCGGCGGCAGCAGCA
GCAGCAGGCTGCACTCGTCGTCGTCGTCGT---TCTCGGACGAGGAGGAGACGGCCATGGCGACGTGCTTCAGGGTGCGG
CACGAGAGCTTCAGGGCGCTCAAGGGCTGCCGCGTCGCCGTGACGGTGAGGAGCGCGCTGGCGTCCGTCGGTGGTGCCGC
GGCGCATCAGGCGCAGAGGGTCTAACCGAACTACACTAAACTCGCGGTGTGCAAGGACGTGCGTTGT---T-----ACTT
GATGTCGAGTGGAGTT-TACCCAAGTCGTGTGTTGGCTTTGATTGAGCTTCTGTAATG---CTACTAGCAGTGTATATGA
GAAATAATCAATGAGCATGGCTATGCATGTTCAGAACTTCAGATCAGAACTCTCATCATCTCCTTGCAGACCGAAGACCT
TGCTGTAGTGCCAATCTGACCATCTTTCTTCTCTGGAGCAAGTGCATTTTAAGTTTTCTTTTCTGCCGAAAAAGTGTTTG
AGTGTTAATCCATGTTTTCTTCTCTGGAGCAAGTGCATTTTAGGTTTTCTTTTGTTAATCCATGTTTGAGTGTTATCCTG
GAAAGTTGATCTCTTCCTGCT-------TGTGTTAGTTGGGAAATGAATGCTCAGCAGTGTTGGAAACTGACATGTCCAG
AATTCGTGGAATAAAGAATGTCTATCAGC---------------------------------------------------
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----
>chr3B_1_TraesCS3B01G113100
GGCAGCGGCTTTGCGGGCCCGGGTGGCCTGGTGTGCCCCTACTGCGGCATCCAGCTGGCTACCGCGACGGTGCGGGAGGC
ACATGCATCCCGCATGATGGCAGGGGAGGTGGTTCCCTCCGGCTCGGCTCCGATGCTGCCCCTCTCGTTTCCTGGCATCC
CTCTCTCCGTCCTCTAGGCCTCGTGGTGG-CGATCTTAGTGAGGCGGCATGGATGACTTCAAGACCGTGGTGGCGTATGC
TAGCGGGTGGCAAGTTGCATGGTTGGCTCCGGAT-TGGCGGGTAGTGGTGTTTGGGATGCAGGAGAAATCCCTGCCGGTT
CATCCGGCTCTAACGCGATGTCGC-CGGGGGTGCCGCCTTTCCTTCCTGAAGGGCGTCGGTGTTACCCATCCC-C-ACTG
CCTTCCGCGTGCCGAGGGAAACCCTAGGATATGTCCAGCCAGCAGCGTCGTCAACG-TCGCATCCCTTCTTGGAGGTGTT
GCTTGG-TACTTAGAGGTTCGGAGCCA---CAGTGCGCGCGGTGGGATGAATCCGGAGGGTGCAGTGGTGGCGGATCATT
TGTGCTTT-CTCGAGCCGCCATTGTTGGCATTTTCAA-TTCTTTCCTTTTC-TTTTGGGCTTGATGTGTCGTTTGCCCCA
GCAGTTATCTTGTGGTCGGCGAATGTTGCTTAA---TAATCTAAAGCGGGA-AATCCCTTTTTTGGCTATTTTATTGGTT
ATTAATAATAACTGACCCTTTTTGATACAACGTCGTAAGTTTTGGCAACGGGTAGAATATAAATGAATCCTGCTTAGCTC
ATGGATCCAAACAGTGTGAGGTCAAAGGTCGTCTCTGCATCGCGGAATCTTGGACAGCCGAGCAGTAACAAAAGTAATCA
GATGAG----ATACTAA---------------------------------------------------------------
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-----------------------------------------------------CGGCAGCGGGAGACGTGCAAACGGCCA
GCCAGCACACTTCTCATTATTAATCCACGAGAATCCACCCT--CTCTCTCTGCTGCCGACGAGCATAAAACCCCACACTC
GCTGCGCACCTCAGTGATCACTTCCTCCTTCTCCTCTGCAA-----------CTTGCAAGGACACGATCCCTCTGTTTCG
CTGTACAG-AGCAGAGACACGTC----GATCCATCCATCCATGGCGGCCACCGTCGGCAACGGCAAGGACAGGGAGGAGG
CGGTGGTCCACCCGAACCCGAGGCAGGGGGGCAAGCTCTTGTCCAGGCTGCTGACGAGGGACAGCTCTGCCGCCGCGCCG
TCCTTCAGGGTCTACTACGGCGTGGCCTCCGCCGGCGCGGTGCCGTTCCTGTGGGAGTCGCAGCCGGGCACGCCCAAGAA
CGCCGTCTCCGACACGACGATGCCGCCGCTCACGCCTCCGCCGTCCTACTACGCCGC---CGGCGCCGGGGCCGCCAAGA
AGCACGCGGCGCGCAAGGCCGC---CGCCGGGAGCAACAGGTTCAGGCCGTCCCGCATCCTGGGCTCCATCCTCATGGCG
ACGCGGAGGCGGGGCCGGACGACGC---CGTCGGGCTCGCCCACCTCGTCCTTCTCCTCCGCGTCG------------AC
CTCGTCATCGTCATCCTCCTACTCGGCATCTTCGTTCCGCCGTACCACGCAGTCGCCGATGCGGGCCGGCGGCAGCAGCA
GCAGCAGGCTGCACTCGTCGTCGTCGTCGT---TCTCGGACGAGGAGGAGACGGCCATGGCGACGTGCTTCAGGGTGCGG
CACGAGAGCTTCAGGGCGCTCAAGGGCTGCCGCGTCGCCGTGACGGTGAGGAGCGCGCTGGCGTCCGTCGGTGGTGCCGC
GGCGCATCAGGCGCAGAGGGTCTAACCGAACTACACTAAACTCGCGGTGTGCAAGGACGTGCGTTGT---T-----ACTT
GATGTCGAGTGGAGTT-TACCCAAGTCGTGTGTTGGCTTTGATTGAGCTTCTGTAATG---CTACTAGCAGTGTATATGA
GAAATAATCAATGAGCATGGCTATGCATGTTCAGAACTTCAGATCAGAACTCTCATCATCTCCTTGCAGACCGAAGACCT
TGCTGTAGTGCCAATCTGACCATCTTTCTTCTCTGGAGCAAGTGCATTTTAAGTTTTCTTTTCTGCCGAAAAAGTGTTTG
AGTGTTAATCCATGTTTTCTTCTCTGGAGCAAGTGCATTTTAGGTTTTCTTTTGTTAATCCATGTTTGAGTGTTATCCTG
GAAAGTTGATCTCTTCCTGCT-------TGTGTTAGTTGGGAAATGAATGCTCAGCAGTGTTGGAAACTGACATGTCCAG
AATTCGTGGAATAAAGAATGTCTATCAGCCGAATAAAAGATTAAACAACCCTTTCAGCCTGCATGCCAAAATTGTGCTTT
TCCTCTCTAACTGAATTATATTTTTGGCGCTG-TCCAACAACTGTGTGAGCAGAAAAGGAAAAAA---ACGCCTTGTTTA
ACAAAAACGAAAAGGAAAAAACGCACGCAGAAGTATTCTGTA--CTTTTGCGGGATGTTTTCTGCAGACTGCAGTCCCCA
GTCATTTTCCCTGCACACACGGGAATTGTTCTCGGCATCCTCGCAGTTGCTGCCATTTGTAGGCTCTCTCAA--------
GCGCAC----AAGGAAGCAAAAAATAAATAAATGAAAAATCATGTTTAGATGAAGAAGAAGAAGAAGAAGAAAAATGGGT
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----------------------------------------------------------------------ACTGTGTCAA
GTGCGATGGTCCTGTGAATGCACATGACCGCAATT---------CATGCTGAG------------CCCTGAGTAGTGTGA
GATCGTGAGGAGTGAAT-----------------------------------GCACATGGTTGCAAATTTGCAATACAAG
ACTGCAAATAT----TTATGTTTGAGTAGAA-CCAAAATGTTCA-------------CTATGTGTAGTGCAATGGCACTG
TGATCGCACATGACCACA---------GTGGCATATGCTGAGGAGTGAGGGCTAG--------CAGTAAGTGCATTTTTG
GCTAT---------------------------------------------------------------------------
---------------------------------TCGGCCGTAGGTTG-CCCCATCCATGAGGAGACACCGATGAGACCCA
ACAAAATAAATATGTT----AACAGTTCACTGGTTAATGGCTCTTTCTGAACATCAACC--------AGCTCACACTCAC
CAAGTGCAAGTATAGTACTGGACTGATGGTACGGTAAGCTGGTGCGGTTCATGTTAAACCGGACAGGT-TACCTTAAGTA
ACCCGAATCCGGGACGAACCTTCCATGATTCGTTGACGGTAACAAGATGGTGAAAACTTGCGTGCAACGGACGGGTTTCC
CGCTGCCGCAGTCACGT---------------GAATGTG----AATCCCCGCACGCTTCAGATCCGACTTGGAGTACTGT
CGCAA----------CGACATGGTTTTGTCCTTTGTTGAGATGTTTTGTACTGTACTATA-----CTACAACTGTTGACC
CGGA
>chr2B_3
--CAGCGGCTTTGAGAGCCTGGGTGGCTTGGTGTGCCCCTGCTGCCGCGTCCGGACGGCTACTGTGATGCTGCGGGAGGC
ACAGGCATCCCGCGTGATGGT-GGGGAGGTGGTTCCCTCCGGCACGGCTCCGGTGCTGCCCCTCCCGATTCCTGGCGTCC
CTCGCTCCATCCTCTAGGCCTCGTGATGG-CGATCTCAGTGAGGCGGCATGGATGACTTCAAGACCGTGGTGGCGTATGC
TAGCGGGTGGCAAGTTGGATGGTTGGCTCCGGATCGGGCGGGTACTGGTGTTTGGGATGCGGGAGAAATCCCTGCCGGTT
CATCCGGCCATGACGCGGTGTCGCCTGCGGGTGCGGCCTTTCCTTCCTGAAGGGCGTCGGTGTTACCCATCCC-C-ACTC
CCTTCCGCGTGTTGGGGGAAACCCTATGGTATGTCCGGGCAGTAGCGTCGTCTATG-TCGCGTCCCTTCTTGGAGGTGCT
GCTTGG-TACGCGGCGGTTGA-AGCCTTGTTG---T--GCGGTGGGACGAATCCGGAGGGCGCAGCGGTTGCGGATCATT
TGTGCTTT-GTCGAGCTGCCGTTGTTGGCATTTATCTCGTCTTTCTTTTTC-TTTTGGGCTTGATATGCTGTTCGCCCCG
GTAGTTATCTTGTGTCAGGTGGAAGTTGTTTTA---TAAT----------------------------------------
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----
>chr2D_3
--CAGCGGCTTTGAGAGCCTGGGTGGCTTGGTGTGCCCCTGCTGCTGCGTCCGGGCGGCTACTGTGATGGTGCGGGAGGC
ACAGGCATCCTGCACGATGGT-GGGGAGGTGGTTCCCTCCAGCACGGCTCCGGTGCTGCCCCTGCCGATTCCTGGCGTCC
CTCGCTCCGTCCTCTAGGGCTCGTGATGG-CGATCTCAGTGAGGCGGCATGGATGACTTCAAGACCGTGGTGGCGTATCC
TAGCGGGTGGCAAGTTGGATGGTTGGCTCCGGATCGGGCGGGTACTGGTGTTTGGGATGCGGGAGAAATCCCTGCCGGTT
CATTCGGCCATGACGCGGTGTCGCCTGCGGGTGCGGCCTTTCCTTCCTGAAGGGCGTCAGTGTTACCCGTCCC-C-ACTC
CCTTCCGCGTGCTGGGGGAAACCCTAGGGTATGTCCGGGCAGCAGCGTCGTCTACG-CCGCGTTCCTTCTTGGAGGTGCT
GCTTGG-TACGCGGCGGTTCGGAGCCTTGTTG---T--GCGGTGGGACGAATTCGGAGGGCGCAGCGGTTGCGGATCATT
TGTGCTTT-GTCGAGCTGCCGTTGTTGGCATTTATCTCGTCTTTCTTTTTC-CTTTGGGCTTGATATGCTGTTC-CCCCA
GCAGTTATCTTGTGTCCGGTGGAAGTTGTTTTA---TAATATATAAAGCGG-GGGA------------------------
--------------ACCCTTTT----------------------------------------------------------
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----
>chr2A_3
--CAGTGGCTTTGCGGGCCAGGATGGGTTGGTGTGCCCCTGCCGCCGCGTCCGGACGGCTACCGCGATAGTGCCGGAGGC
ACCGGAGTCCCACACGACGGT-GGGAAGGTGGTTCCCTCTGGCACGGCTCTGGTGCTGCCCCTTCCGATTCCTGGCGTCC
CTCGCTCAGTCCTCTAGGCCTCGTGATGG-CGATCTCAGTGAGGCGGCATGGATGACTTCAAGACCGTGGTAGCTTATGC
TAGCGGGTGGCAAGTTGGATGGTTGGCTCCGGATCGGGCGGGTACTGGTGTTTGGGATGCGGGACAAATCCCTGCCGGTT
CATCCGGCTCCGACGCGGTGTCACCGGCGGGTGCCGCCCTTACTTCCTGAAGGGCGTCGGTGTTACCCATCCC-C-ACTC
CCTTCCGCGTGA-TGGGGGAACCCTAGGGTATGTCCGGGCAGCAGTGTCGTCGACG-TCGCGTCCCTTCTTGGAGGTGCT
TTTTGG-TACACGGCGGTTCGGAGCCTTGGTG---T--GCGGTGGGACGAATTCGGAGGGCGCAACGGTGACGGATCATT
TGTGCTTT-GTCGAGCTGCCGTTGTTGGCATTTAGCTCTTTTTCCTTTTTC-TTTTGGGCTTGATATGCTGTTCGCCCCA
ACAGTTATCTTGTGTTCAGTGAAAGTTGCTTTA---TAATATATAAAGCGG-GGAA------------------------
--------------ACCCTTTTTTGGC-----------------------------------------------------
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----
>chr5D_7
------GGCTTTGCGGGCCCGGGTAGCATGGTGTGCCTCTGCTGTCGCGTCCGGTCGGCTACCGCGACGGTGTTGGAGGC
ACAGGCCTCGGGCACGATGGCAGTGGAGGCGGTTCCCTCCGGCGCGGCTCCAATGCTGCCCCTCCCAATTCCCGGCGTTC
CTCTCTCCATCCTCTAGGCCTCGTGATGG-CGATCTCAGTGAGGCGGCATAGATGATTTCAAGACCGTGGTGGCGTATAC
TGGCGGGTGGCAAGCTGGCTGGTTGGCTCCGAATCGGGCGGGTAGTGGTGGTTGGGGTGCGGGAGAAATCCGTGCCGGTT
CATCCGGCGCCGACGCGGTGTCGCCTGCGGGTGCCGCGTTTCCTTCCTGAAGGGCGTCGGTGTTACCCATCCCGC-ACTC
CTTTTCGCGTGCCTGGGGGAACCTTAGGACACATCCGAGCAGCAGCGTCATTGACG-TCGCATCCCTTCTTGGAGGTGCT
TCTTGG-TACGCGGCGGTTCGGAGCCT---TG---T--GCGGTGGGACGAATCTGAAGGGCCCAACGGTGGTGGATCATT
CGTGCTTT-GTCGAGCTGCCGTTGTTGACATTTAGTTCTTCTTTCTTTCTC-TTTTAGGCTTGATGTGCTGTTTGCCTCA
TCAGTTATCTTGTGATCGATGGAAGTTGCTTTA---TAATATAAAGCGGGG-AAAA------------------------
--------------ACCCTTTTT---------------------------------------------------------
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>chr3D_14
-------------CGGGCCCGGGTGGCCTGGTGTGCCCCTGCTGCGGCGTCCGGCCGGCTACTGCGACGGTGCGGGAGGC
ACAGGCATCCCGCACGATGGCGAGGGAGGTGGTTCCCTCCGGCTCGGCTCCGATGCCGCCCCTCTCGTTTCCTGGCGTCC
CTCTCTCCGTCCTCTAAGCCTCATGAT-GGCGTTCTCAGTGAGGCGACATAGATGACTTCAAGACCATGGTGGCGTATGC
TAGCGGGTGGCAGGTTGGATGGTTGGCTCCGGAT-TGGCGGGTAGTGGTGTTTGGGATGCGGGAGAAATCCCTGCCGGTT
CATCCGGCTCCGACGCGGTGTCGCTCGGGGGTGCCGCCTTTCCTTCCTGAAGGGCGTCGGCGTTACCCATCCC-C-GCTC
CCTTTCGCGTGCCGGGGGAAACCCTAGGATATGTCCAGGCAGCAGCGTCGTCAACG-TCGCATCCCTTCTTGAAGGTGAT
ACTTGG-TACGCGGAGGTTCGGAGCCT---CAGTGC--GCGGGGGGATGAATCCGGAGGGCGCAGCGGTGGCGAATCATT
TGTGCTTTTGTCGAGCTGCCATTGTTGGCATTTTTCTCTTCTATCTTTTTC-TTTTGGGCTTGATGTGCTGTTTG-----
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----
>chr3A_14
CGGGCCTG------------GGGTGGCCTGGTGTGCCACTGCGGCCACGTCCGGTCGGCACCCGCGACGGTGCTGGAGGC
ACAGGCCTCCCGCACAATGGTGGTGGAGGTGGTTCCCTCCGGCGCGGCTCCGGTGCTCCCCCTCCCGATTTCTGGCGCTC
CTCTCTCCATCCTCTAGGCCTCGTGATGG-CGGTCTCAATGAGGCGGCATGGATGACTTCAAGACCGTGGTGGCGTATGC
TGGTTGGTGGTTGGCTGGCTGGTTGGCTCCGGATCGGACGGATAGTGGTGGTTGGGATGCGGGAGAAATCCCTGCCGGTT
CTTCCGGCGCCGACGCGGTGTCGCCTGCGGGCGTCGCCTTTCCTTCCTGAGGGGCGTAGGTGTTACCCATCCT-CCACTC
CCCTCCGCGTGCCGGGGGAAACCGTAGGACATGTCCGGGCAGCAGCGTCGTCAACG-TCGCACCCCTTCTTGGAGGTGCT
GCTTGGTTACGCGGTGATTCGGAGCCT---TGGTGT--GTGGTGGGACGAATCCGGAGGGCGCAGCGGAGGCGGATCATC
TTAGCTTT-GCCGAGTTGCCGTTGTTGGCATTTTGTTCTTCTT-CTTTCTC-TTTTGGGCTTGATGTGCTGTGCGCCCCA
GCAGTTACCGTGTGATTGGTGGAAGTTGCTTTA---TT-TATAAAGCGGAG-GGAA------------------------
--------------ACCCTTTTTCGGTAT---------------------------------------------------
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----
>chr1B_14
-------------CGGGCCCGGGTGGCCTGGTGTGCCCCTGCTGCCGCGTCCGGCCGGCCACCGCGACGGTGCGGGAAGC
ACAGGCATCCCACACGACAGCGGGGGAGGTGCTTCTCTCCGGCTCAGCTCCGATGCTGCCCCTCCCGTTTCCTGGCGTCC
CTCTCTCTATCCTTTAGGCCTCGTGAT-G-CGATCTCAGTGAGGCGGCATGGATGACTTCAAGACCATGGTGGCGTATGC
TAGCGGGTGGCAAGTTGGATGGTTGGCTCCGGAT-AGGCAGGTAGTAGTGTTTGGGATGCGGGAGAAATCCCTACCGGTT
GATCCGGCTCCGACGCGGTATCGCTCGCGGGTGACGCCTTTCCTTCCTGAAGGGCGTCGGTGTTGCCCATCCC-C-ACTC
CCTTTCGCGTGCCGGGGGAAACCCTAGGATATGTTCGGGTAGCAGCGTCGTCAACG-TTGCATCCCTTCTTGGAGGTGCT
GCTTGG-TACGTGGAGGTTCGGAGCCT---CGGTGC--GTGGTGGGAAGAATCCGGAGGGCGCAGCAGTGGCGAGTCATT
TGTGCTTT-GTCGAGCTGCCATTGTTGGCATTTATCTCTTCTTTCTTTTTTTTTTTGGGCTTGATGTG------------
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----
>chr1B_14
-------------CGGGCTCGGGTGTCCTGGTGAGCCTTTGCTGCCGCGTCCGGTTGGCTATCGCGATGGTGCTGT-AGC
ACAGGCCTCCGGCACGATGG---TGGATGCGGTTCCCTCCGGCGCAGCTCCGGTGCTGCCCCTCCCGATTCCTGGCGTTC
CTCTCTCCGTCTTCTAGGCCTCGTGAT-GGCGATCTCAGAGAGGCGACGTGGATGACTTCAAGACCGTGGTGGCGTATAC
TGGCGGGTGGCAAGCTGGCTAGTTGGCTCCGGATCGGGCGGGTAGTGGTGGTTGGGATG-GGGAGAAGTCCTTGCAGGTC
CATCCGGCGCCAACGCGGTGTCGCCTGCGGGTGCCG-CTTTCCTTCCTGAAGGGCGTCGGTGTTACCCATCCC-CTACTC
CTTTCCACGTGCCGGGGGAGGCCCTAGGACATGTCCGGGCAGCAGCATCGTTGACG-TCACATCCCTTCTTGGAGGTGCT
TCTTGG-TACGCGGCGGTTCGAAGCCT---TGGTGT--GCGGTGGGACGAATGTAGAGGGAACTACGGTGGCGGTTCATC
CGTGCTTT-GTCGAGCTGCCGTTGTTGGCATTTAGTTCTTCTTTCTTTCTC-TTTTGGGCTTGATGTGCTGTTCGCCCCA
GCAGTTATCTTGTGATCGGTGGAAGTTGCTTTA---TAATATAAAGGGGGA-AACCCTTTCTTGGATAT-----------
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>chr5B_14
-------------CGGGCCCAGGTGGGCTGGTGTGCCTCTGCTGCCGTGTCCGGCCGGCTATCACGACGTTGTGGGAGGC
ACAAGCATCCCGCATGATGGCGGGGGAGGTGGTTCCCTCCGGCTCGGCTCCGGTGGGGCCTCTCCCGATTCCTGGCGTCC
TTCTCTTCGTCCTCTAGGCCTCGTGGTGG-AGATCTTAGTGAGGCGGCATGGACGACTTCAAGACCGTGGTGGCATTTGC
TAGCGGGTTGCAATTTGGGTGGTTGGCTCCAGATCAGGCGGGGAGTGGTGTTTGGGATGCGGGAGAAATCCCTGCCGGTT
CATCCGGCTCCGACGCAGTGTCGCCTGCGGGTGCCGCCTTTCCTTCCTGAAGGGCGTCGGTGTTACCCATCCC-C-ACTC
TCTTCTACGTGCCAGGGGAAACCCTAGGATGCATCCGGGCAGCAGCGTCGTCGCCATTCGCATCCCTTCTTGGAGGTGTT
GTTTGG-TACGCGACGGTTCGGAGACTCGGTG---T--GCGGTGGGACAAATCCGGAGGGCGCAACGGTGGCGGATCATT
TGTGCTTT-GTTGAGATGACATTGTTGGCATTTATTTCTTCTTTCTTTTTT-CTTTGGGCTTGATGTGTTGTTCGCCCCA
ACAGTTATCTTATGGTCGGTGAAAGTTGCTTTA---TAATCTA-------------------------------------
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>chr3D_622
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--------------------------------------------------------------------------GCCCCA
GCCGTTATCTTGTGGTCGGTGGATGTTGCTTTAGTATAATCTAAAGCGGAGGAAACCCTTTTTCAGCTATTTTATTGGTT
AAC--TAATAACTGATCTTTTTTGATACAACGTCGTAAGTTTTTGCAACGGGTAGAAGATAAACAAATCCTGCTTAGCCC
GTGGATCCAAACAGTGCGAGGTCAAAGGTCGTCTCTACATCGTGGAATCTTGGACAGCCGAGCAGTAACAAAAGTAATCA
GATCAGATACATACTAA---------------------------------------------------------------
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-----------------------------------------------------CAGCAGCGGGAGACGTGCAAACGGCCA
GCCAGCACACTTCTCATTATTAATACAC----------CCACGCTCTCTCTGCTGCCGACGAGCATAAAACCCCACACTC
GCTCCGCATCTCAGTGATCACTCCCTCCTCCTCCTCTGCC------------------------CGATCCCTCTGTCTCT
CCGTACCATAGCAGAGACACTTT----CATCCATCCGTCCATGGCGGCCACCGT------CGGCAAGGAGAGGGAGGAGG
CGGTGGTCCACCCGAACGCGAGGCAGGGGGGCAAGCTCTTGTCCAGGCTGCTGACGAGGGACAGCTCGGCCGCCGCGCCG
TCCTTCCGGGTCTACTACGGCGTGTCCTCCGCCGGCGCGGTGCCGTTCCTGTGGGAGTCGCAGCCGGGCACGCCCAAGAA
CGCCATCTCCGATGCCGCGATGCCGCCGCTCACGCCTCCGCCGTCCTACTACGCCGCCGGCGGCACCGCCTCCGCCAAGA
ATCACGCGGCGCGCAAGGGCAAGGTCGCCGGGGGCTACAAGTTCCGGCCGTCAGGCATCCTGGGCTCCATCCTCATGGCG
ACGCGTAGGCGGGGCCGGACGACAC---CGTCGGGCTCGCCCACCTCGTCCTTCTCCTCCGCGTCCACCTCCTCCTCCTC
CTCGAC------------CTCCTCGACGTCATCCTTCCGCCGCACG------------------------GGCG---GCA
GCAGCAGGCTGCACTCGTCGTCGTCGTCGT---TCTCGGATGACGAGGAGACGGCCATGGCGACGTGCTTCAGGGTGCGG
CACGAGAGCTTCCGGGCGCTCAAGGGCTGCCGCGTCGCCGTGACGGTGAGGAGCGCGCTGGCGTCCGTCGGTGGCGGCCA
CGGCGCCGCGGTGCAGAGGGTCTAAACG-----CACTGAACTCGCAGTGTGCAAGGACGTGCGTTGATACT-----ACTT
AATGTCGAGTGGAGTTTTACCCAAGTCGTGTGTTGGTTTTGATTGAGCTTCTGTAATCCTACTACTAGCAGTGTATATG-
GAAATAATCAATGAGCATGGCTATGCATGTTCAGAACTTCAGATCAGATCTCACATTTCGCCTCATTTGA----------
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----------CATGTTTGAGTAGACCCACTGAAGAACTC----------------------------GAGTGTTATCCTG
GAAAGTTGATTTGTTCCTACTATACTTGTGTGTTCGTTGGGACATGAATGCTCAGCAGTGTTGGAAACTGACATGTCCAG
AATTCGTGGAATAAAGAATGTCTATCAGCCGAAGAAAAGATTAAACAACCCTTTCAGCCTGCATGCCAAAATTGTGCTTT
TCCTCTCTAACCGAATAATTTTTTTGGCGCTGATATAACAACTGTGTGAGCTGAAAAGGAAAGAACGCCTAAAAAT----
---------AAAAGGAAAAAACGCACGCAGAACTATTCTGTA--CTTTTGTGGGATGTTTTCTGCAGACTGCAGTCCCCT
GTCATTTTCCCTCCACACACAGGAATTGTTTTCTGCATCCTCGCAGTTGCTGCCATTTGTACGCTCTCTCAA--------
GCGCAC----AAGGGAGCAAAAAAGAAA-----GAAAAAACATGTAAGGATATTCCAGAGA-------------------
----AAAAAATGGC------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------------ACTGTGACAA
GTGCGATGGTACTGTGGATGCACATGACCGCAATACAGT-GGTACATGCTGAGCCCCGAGTA--------------GTGA
GGTCGTGAGGAGTGAACGCACATTACCCGCAAAAAAAAAAAAAGGAGTGAACGCACATGGCTGCAAATCTGCGATACAAG
AATACAAATAC----TTATGTTTGAGTAGAAACCAAAATGTTCA-------------CTATGCATAGTGCAATGGCACTG
TGATCGCACATGACCACA---------GTGGCATATGCTGAGGGGTGAGGGCCAG--------CAGTAAGTGCATTTTTG
GCTAT---------------------------------------------------------------------------
---------------------------------TCGGCCATAGGTCG-CCCCATCCATGAGGAGACACGGACGAGACCCA
ACAAAATAAATATGTT----AACAATTCACTGCTTAATGGCTCTTTCTGAACATCAACC--------AGTTCACACTCAC
CAAATGCAAGTATAGTATTAGCA-----GTACTGTAAGCTGGTGCGGTTCATGTTTAACCGGACAGGT-TACCTTAAGCA
ACCCGAATCCGAGACGGACCTTGTATGATTCGTTGACGGTAAGAAGATGGTGAAAACTTGTGTGCAACGAACGGGTTTCT
CGCTGCCGCGGTCACGT---------------GAATGTGAAGGAATCCCCGTACGCCTCAGATCCGTTTTCGAGTACTGT
CGCATCCTTCAGCAGCGACTTGGTTTTGTCCGTTGCTGAGATGTTTTCTGCACTACTATATATATATACAGCTGTTGACT
CGGA
>chr3A_743
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TTTTTGCAACGGGTAGAAAATAAATTAATCCTGCTTAGCTC
ATGGATCCAAACAGTGCGAGGTCAAAGGTCGTCTCTGCATCGTGGAATCTCGGACAGCCGAGCAGTAACAAAAGTAATCA
GATCAGATACGTACTAAGGGCATGTACAATGGTGCTATCTTAAGAGTGCCACGTAGAATAAATGATAATGTGAAGGAGAG
AGAACTCATAAGAAAAGGCTTGTCTTCTCTTATTTAAAAAAAGACAAGAGATGATCTCTTAGCACAATATGTCTCACCAC
ATTTTTAGGAATGACTAGTTATTGAAGATAAGGCTAAGAGATGATCCATTGTAGACTTTTTTTTTGTCATATCTAAATTA
CATGCAAGACTTAAGATAAGACTACCTTATTAACCATTGTACATGCCTAACAGCAGCAGCGGGAGACGTGCAAACGGCCG
GCCAGCACACTTCTCATTATTAATCCAC----------CCT--CTCTCTCTGCTGCCGACGAGCATAAAACCCCACACTC
GCCGCGCATCTCAGTGATCACTTCCTCCTCCTCCTCTGCAAGACTCCAGCAACTTGCAAGGACGCGACCCTGC-------
-----CAG-AGCAGAGACACGTCGGTGCATCCATCCGTCCATGGCGGCCACCGT------CGGCAAGGAGAGGGAGGAGG
CGGTGGTCCACCCGAACGCGAGGCAGGGGGGCAAGCTCCTCTCCAGGCTGCTCACCAGGGACAGCTCGGCCGCCGCGCCG
TCCTTCCGGGTCTACTACGGCGTGGCCTCCGCCGGCGCGGTGCCGTTCCTGTGGGAGTCGCAGCCGGGCACGCCCAAGAA
CGCCGTCTCCGACGCCGCGATGCCGCCGCTCACGCCGCCGCCGTCCTACTACGCCGCTGGAGGCACCGCCGCCGCGAAGA
AGCACGCGGCGCGCAAGGCCGC---CGCCGGGGGCAAGAGGTTCAGGCCGTCCCGCATCCTGGGCTCCATCCTCATGGCG
ACGCGGAGGCGGGGCCGGACGGCGCCCTCGTCGGTATCGCCCACCTCATCCTTCTCCTCCGGGTCG------------TC
CTCGTC------------CTCCTCGACGTCGTCCTTCCGCCGCGCG------------------------GGCGGCAGCA
GCAGCAGGCTGCACTCGTCGTCGTCGTCGTCGTTCTCGGACGACGAGGAGACGGCCATGGCGACGTGCTTCAGGGTGCGG
CAGGAGAGCTTTCGGGCGCTCAAGGGCTGCCGCGTCGCCGTGACGGTGAGGAGCGCGCTGGCGTCCGTCGGCGGCGGCCA
CGGCGCCGCAGTGCAGAGGGTCTAACCG-----CACTGAACTCGCCGTGTGCAAGGACGCGCGTTGATACTACAGTACTT
AATGTCGAGTGGAGTTTTACCCAAGTCGTGTGTTGGTTTTGGTTAAGCTTCTGTAATGCTGTGGT----AGTGTATATGA
AAAATAATCGATGAGCATGGCTATGCATGTTCACAACTTCAGATCAGATCTCTCATCTCC--------------------
-------------ATTTGACCATTTTTCATCATTT----------ATTTGTGGTTTTCTTTTCTGTTAGGAAT-------
AGTGTTACTCCATGTTTGAGTAGACCCACTGAATAACTC----------------------------GAGTGTTATCCTG
GAAAGTTGATTTCTTCTTATGCTGCTGGTGTGTTGGTTGGGACATGAATGCTCAGCAGTGTTGGAAACTGACAGGTCCAG
AATTCGTGGAATAAACAATGTCTATCAGCCGAACAAAAGATTAAAGAACCCTTGCAGCCTGCATGCCAAATCTGTGCTTT
TCCTCTCTAACGAAATTATTTTTCTGGCGCTGATCGGACAACTGTGTGAGCTGAAAAGGAAAAAACTCCTTGCTTAA---
--AAAAACGAAAAGGAAAAAACGCACGCAGAACTGTTCTGTA--CTTTTGTGGGATGTTTGCTGCAGACTGCA-TCCCCT
GTCATTTTCCCTGCACACACGAGAATTGTTTTCTGCATCCTCGTAGTTGCTGCCATTTGTACGCTCTCTCAA--------
GCGCATGAGGAAG--------AAGTAGA-----AGAAAATCATGTTTGCGTAATTCAGAAGAAGAAGAAATGGCCACTGA
TTTGATGCTCTAAAAGCATCCCTCGTCAAAAACACGTGCGGGGTAAACTGTCGCTTTAGCGCGCGCGGGGCGTTTTCGCG
CGCTCCAGCGAAGGCGGAAACTAGCGCGCGGGAAAAGGTTGCACGCGCGGGAGGAAGCGGTCAGCCGCGCGCTAGATTTG
GCGCACCACTTCCGGCGCGCCTATAAATTGAGGCGCTCGCCACGCGCCCCCCAGACTGCCACGCGTGCTCTCCCCGCCGC
CTCCGCCGCTTCGTCTGCTGGGCTTTCTCACCTCTTGCCACCGCCGTGCCACCATGTCGCGTGTAGACGTCATCCTCTCT
CCTCTTTTCCCCATGCCTGCGTCACTCCTGGCGGCGGCTCAGTCGGAACCCTAGCCGCCACCGCCCCCTCCCCTACTTCC
TCCTCCCTCGCTGTCGCTGGAGGACGCCGGCACGCTAAGTCCGGCCGGCAGATGGCGGCGGCGGGGCATTTCCTCGCCCT
GCTTTACGCTCTTGCGGCAGGGGAGGTTCTGCTTCTCCACGGCCTCTGTGCGGCGTGGCGTCGCCGGCGCCGACGAGCCT
CCATAGCGCCGTTTGGTGGCTCTCCTCCGGCAGGTCTCGACGGGGTGGCGGCCCCCTTTTCCTCCTGTCCAAGCTCGTCC
GTGTGCTCGTCGTCGGATGTGGCAGCTTGCCGGATCTGGCCAACTCCGACTGGTTCTGGTCCCATCGGAAGGCTACCCTG
GCTGGGGACACTGGTCGTCGCGCGTGGATGCGGTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGCTGTGGCTGCTGGCCTGGTGGTCGCGCAGGCGGTCTCAGCGAGGGGTCGGCACTGGTTGGAG
GTGCTCCCCTTGGTGCTCTGCGAGGTTTGATGGGCGGGGGTTCATGGCCGGCCGGTTCGGGTAGTTGGTGGTCGAGCTTC
ACCGGGAGAAATCCTATCTCCGGCCTTTGCGGGAGACTGGAAGCGTTGCTGCTGTGTGCTGCTCCTCTCCTCTCCCCATG
GCATTGGCTCCGGAGGAAAACCTCATATCTACGCGATTTGGCGATGAAGGCGTCTTCACGTCTTCTTCCTCCTTGAGGCA
TCGTCTCGGAGCCGACTACAACTAGAGGCTAGTGGTTGGCGGCATCTTCGCCGCATGGTTTGCTGAGGCGGCCGTTTCGG
GGGCATGGATCTCTTTTTGGCAACGATGATGGCGTCGAGAGGATCTTGGGTCGCGGCTCGGACTTCGGTAGTCGGATCTT
ACCGGCGTGTCCTAGGTGCTTCTCCGTGGATTGCCTGGTTGCTTTAAAGTCGGAGCTACGGTGGAGCGAGTCTAGGTGGT
GACGATGACAGGCGCTCGGTGGTCAGGAGGCACGGTCGGCACAAGTCCTGCATATTTCCCTGGCGATGCCTATTGTCAAA
GTCGGAGCTGTCAATTGTTCGTTCGTGTGGCCATTTGTTGGTACGTGCCGTCGTGGCTTATGTTCCATGTCGATGGCGAG
GTTGGCCGGTGGTGCCCATGTCTTTACGAGTTGGGTTGTATCGGTTTTAGCCAAGTTTTCCGTCAATTAACCGGGCAATT
CTCACTTCTTCTTAATCAAGGAAAATGACAAGTCATTTGCCTTGTTTTAAAAAAAAAAGGACACTGTGTGACTGTGTCAA
GTGCGATGGTCCTGTGAATGCACATGATCGCAGTACAGTGGGTACATGCTGAGCCCGCCCTGAGCCCCTGAGTAGCGTGA
GATCGTGAGGAGTGAAT-----------------------------------GCACATGGCTGCAATACA----------
--TGGAAATAT----TTTGGTTGGGATACAT-CAATTCCAGAAGCAGAAAGTGTTCGCTGTGTCTAGTGCAATGGCACTG
TGGCCGCACATGACCGCAACACATACAGTGGTACATGCTGAGGAGTAAGGGCCAG--------CAGTAAGTGCATCTTTG
GCTATCGGCCATCGAGTCGGCTCCTCTGCCGTACTGCACCCTGCCGTTGGCTCATTGACGCATGGGGCCGAGCCCACATG
TTAGTGGATTGACGGCACGAGGAGCTGCGTCCTTCGGCCATAGGTTG-CCCCATCTAT-----------GAGGAGACCCA
ACAAAATAAATACAATTTTGAACAATTCAGTGGTTCTTCCTGGCCC--------CAACC--------AGCTCACACTCGC
CAAATGCAAGTATATTAGTGGACTGGTGGTACCGTAAGCTGGTGCGGTTCATGTTAAACCGGGCAGGTTTACCTTAAGTA
ACCCGAATCCGAGACGAACCTTCTATGATTAGTTTGAT----GATGATAGTGAAAACTTGTGTGCAACGAACGGGTTTCC
CTC--CCACGGTCACGT---------------GAATGTG----AACCCCC------------------------------
--------------------------------------------------------------------------------
----
>chr3A_2117
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-------------------------------------------------------------------GAGTGTTATCCTG
GAAAGTTGATTTGTTCCTATACTACTTGTGTGTTAGTTGGGAAATGAATGCTCAGCAGTGTTGGAAACTGACATGTCCAG
AATTCGTGGAATAAAGAATGTCTATCAGGCCAACAAAAGATCAAAAAACCCTTGCAGCCTGCACGCCAAATCTGTGCTTT
TCCTCTCTAACTGAATTATATTTTTGGCGCTGATCGAACAACTGTGTGAGCTGAAAAGGAAAAAAGAAACGCCTTGTTT-
------------AGGAAAAACCGCACGCAGAACTATTCTGCACTCTTTTTTGGGATGTTTTCTGCAGGCTGCAGTCCCCT
GTCATTTTCCCTGCACACACAGGAATTGTTTTCTGCATCCTCGCACTTGCTGCCATTTGTACGCTCTCGCAAAAAAAAAA
GCGCATGAGGAACGAAGCAAAAAATAAT---------AATCATATTCAGACATCTGAGAAGAAAAAATAGAAAAATGGAA
ATGGAAAAATGGGC------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------ACTGTGACAA
GTGCGATGGTCCTGTGAATGCACATGACCGCAATACAGT-GGTACATGCTGAGCCCCGAGTA--------------GTGA
GGTCGTGAGGAGTGAAT-----------------------------------GCACATGGCTGCAAATGTGCAATACAAG
AATGCAAATACGTATTTATGTTTGAGTAGAAACCAAAATGTTCA-------------ATGTGAACAGTGCAATGGCACTG
TGATCGCACATGACCGCA---------GTGGCATATGCTGAGGAGCGAGGGCCAGCAGTAAGCCAGTAAGTGCATTTTTG
GCTAT---------------------------------------------------------------------------
---------------------------------TCGGCCGTAGGTATACCCCATCCATGAGGACACACGGATGAGACCCA
ACAAAATAAATACTATCTTGAACAATTCACTGCTTCTTTCTGGCCC--------CAACCAGCTCAGTAGCTCACCCTCGC
CAAATGCAAGTATAGTAGT-----------ACTGCATGATGGTGGGATTCATGTTTAACCGGAAAGGT-TATCTTAAGTA
CCCCGAATCCGGGACGAACCTCGACGA------------TAAGAAGATGGTGAAAACTTGTGTGCAACGAACGGGTTTCC
CGCTGCCCTCAGATCCGCTTTGGAACGGCGTAGAATGTG----AATCCCCGTACGCTTCAGATCCGCTTTGGAGTACTGT
CGCATCCTTCACCAGCGACTTGGTTCTGTCCGTTGCTGAGATGTTTTTTCTACTGCTACA-----ATACAGCTGTTGACT
CGGA
>SNPs
S---------------------------------------S-------S---S---------------------------
---S------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
-----------------S------------------------------------------S-------------------
-----------------S-------------------------------------------------------------S
--------------S-----------------------S-----------------------------------------
----------S-S-------------S---------SS----------------------S----S--------------
---------S------S-----------------SSS--------S-----------------------S----------
-------------------S-----------S----------------------S--------S----------------
-SSSS--------------------------------------S-------------S------S---------------
----------------S-------------------------S-------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
----------------------------SSSSSSSSSS------------------------------------------
--------S--------------------S---------------------------------S------------S--S
-S-------------------------S--------S-----------------SSSSSS---------S----------
-----------------S-------------------------------------------------S------------
------S-------------------------------------------------------------------------
-------------S-SS-----------------------------------------------S---SS----------
--------------------------------S-----------------------------------------------
------------------------------------------------------------------------------S-
------SSSSSSSSSSSS--S----S-S--S--S--------S--SSSSSSSSSSSSSSSSSSSSSSSSS---S------
-------------------------------------------S------------------------------------
------------S-------------------------------------------------------------S-S-SS
S-SSSSSSS--S----------------SSSSS----S-------S--------------------S-------------
S-----------------------------------S-------------------------------------------
------------------------------------------------S--------SS-S-SSSSSS--SSSSSSSSSS
SSSSSSSSSSSSS--S-------S----S--SS-SSSSSSSSSSS----SSS-------------SSSSS--SSSSSSSS
-------S---------SSS-SSSSSS-SSS-S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
----------S-------S-------------------------------------------------------------
---------------------------------S----------------------------------------------
-----------------------------------S---------------S---------------------------S
SS------------------------------S-----------------S----------------------------S
------------------------------S--S---------------------------S------------------
----------------------------SSSSS------------------S-SSS-----------------------S
--------------------------------------------------------------------------------
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----------------------------------S----------------------------------------S----
------------------------------------------------------------S-------S-----------
-S-------------------------------------------------------------S----------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
------------------------S-------------------------------------------------------
---S-------------S-------S------S-----------------------------------------------
-----------------------S------------------S-----------------S--------S----------
---------S-----------------------------------------S--------------SS------------
----S--------------S-----------S---S-----------S-S-SS------------S----S--------S
----
>forward_400
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------GGTGTTACCCATCCCCACTG
--------------------------------------------------------------------------------
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>reverse_2307
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------------------------------------------------------------------CAGACCGAAGACCT
TGCTGT--------------------------------------------------------------------------
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>forward_1362
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--------------------------------------------------------------CACGATCCCTCTGTTTCG
CT------------------------------------------------------------------------------
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----
>reverse_5546
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-------------------------ATGGTACGGTAAGCTGGTGC-----------------------------------
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----
