>input_sequence_56880
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------------------------------------CCCACCACGCCGCAGCTCCGGCGGGCCCAAACCAAACCAAATCA
ATCGCCTCGCCGGATCCCCCTCCCCC--CTCCCTCCGCACCGCCCATGGAGCTGGCGACGCGCGATCTCGCGGCGCTGGG
CGCGGCGGACCTGGTCCGGGTCTCCGCCGCGATCCCGCGCGCCGCGCCGCGCACCTTCGCGCTGCTCACCGCCTGCCTCG
TCTTCCCGCTCTCCTTCGCCGTGCTGGCGCACTCCCTCTTCACCCACCCCATCCTCCGCCGCATCCGCACCTCCGACTAC
ACCGCCACCTCCGCGCAGTGGGTCGCCCTCTTCGCCTACCAGTTCCTCTACCTCATCTTCCTCTTCACCTTCTCGCTCCT
CTCCACCGCCGCCGCCGTCTTCACCGTCGCCTCCCTCTACGCCGCCAAGCCTGCCTCCATCGCCTCCTCGCTCTCCGCGC
TGCCGCCCATCCTGCCCCGCCTCCTCCGCACCTTCCTCTGGGTCTCGCTCCTCATGCTCGCCTACCACGTCGGCTTCGTC
CTCACCGTCGTCCTCCTCATCCTCCTCTTCGACCCGCCCATGACCGCCTCCACCCCGCCGCCCCTCTCCTTCCTCCTCGC
CCTCCTCGCCGTCGCCTTCCTCTTCCTCGCCATCCACGTCTACATCTCCGCGCTCTGGCACCTCGCCAGCGTCATCTCCG
TGCTCGAGCCCCTCTGCGGCCTCGCCGCCATGTCCAAGAGCAGGCAGCTCCTCCAGGGCCGCACCCGCACCGCCGCCGTC
CTCGTTTTCTCCTACTTCGCCATCTGCGGCCTCATCACGGGGATGTTCCGTTCGGCCGTCGTCAAGGCGCGGGGCGAGGA
GGGGAGCCTCGACATGAGCTTGGCCGGCCGGATAGGCGTCGGCGCTCTGCTCGTCTCTGTTCTCGTCTGTGTCAATCTCT
TGGGGCTGCTCGCGCAGAGCGTCTTCTACTACGCCTGCAAGGCCTACCACAACCAGGAGATCGACAGGACCGCGCTGTAC
GAGCACCTCGGCGGCTACCTTGGCGAGTATGTGCCGCTCAAGAGCAATATCCAGATGGAGAACCTGTGAGATTCGTCGTA
AGCTGCTCACTTGCCTGCTCCTTACAAATACTAGCTGTCCTGCTGGATCTTGCTCTAAAGAAGAGCATGCCGTTGCCAGG
A-----------TT-----------TCTTGTTTCTAGTTTATTGTGCTTGCCTGTTGTAATCTGTAATTAATAATAATGC
GCAGTATGGACT--------------------------------------------------------------------
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-------------------------------------------------------------------------
>chr3A_1_TraesCS3A01G329300
ATCCACATTGCAGCACACAGGCAATTAGCTAGCAATGATAGCTTGGGTCGCTGGCAGTGTCGAGGGAGAAAATTTCCATA
AAGGCCTTTCCCTTAACGGCCTCAACAATGTCCTCCTCGTCTATCCCAGTCTTTAGCTCGGCGAGTATGGCATGTGCCTC
CCTCTTCCAAGCCTCGACCTCAAGTGGCAAGAAGCTTCTTCCGGCGACAT------------------------------
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----------------------------------------------------------------------------TGGT
GGCAGTGGTTGGTAACTCACTCCAACTCCAATTTCTATAGTTTTCGAAGCACCCTCGAAGAGC-----------------
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------------------TACACAAAAGACAGGGACTTTTAGGACCTACTTGACATATTTGAAATACTTTTAGAATCTCC
AATGTATTTTACTCTCTATATA----------------------------------------------------------
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----------------------------AAATACTACGAGCGGTCCTTTCCCTAAACATAAAAAATACTAGGAGGCGCCT
CAGGGAATCTTTTTTAATAATATTTTTTTAATAATACAAACTGGTCAGGCTGGTGATAGTGGGGAGTAACTTAGACTAGT
AACATACATATGTTACTAGTGTATGTTACTACCTTCATAGTGGGTAGTGTCATAGGTGTGGTAACATAGTTGCCTTCATT
TATTACTTTGTAGACTCATTATGCATTGGAAACCGCTATGTGATGGTAACATATTATGTTACTCTATTTGCCTCTCTCCT
CATTAACTACTTGCCACATCATCATTTTTGCTTACGTGGCATCTATATTACTACCTATGTTACTCCCACTATGACCAGCC
TCGTAGAAAGTCGCTAGAGCGCCCCCTCGTGGTTCCCGTTCGGTGATACTTTTTTATTTTTG------------------
-----------GCCGCGGCCCTCACTCGTGGTCCGTCGCGCAGCGCGGGCGATTACCACATGAGCCCAAGCCATGCCGCC
TCCCGTGCGCC---------------------------------CTCGTCGCCCGGCGCCACGC----------------
--TCGACACGGGGTCCATCCATCCACCCAAACACCCTGCCAAGTTTTCTTCCACCTATCCCTTCCCCGATTCGAGC----
-GAGCCCGACGCC----CCCCACCGACCGCGCCTTCCCCACCACGCCGCAGCTCCGGCGGGCCCAAACCAAACCAAATCA
ATCGCCTCGCCGGATCCCCCTCCCCC--CTCCCTCCGCACCGCCCATGGAGCTGGCGACGCGCGATCTCGCGGCGCTGGG
CGCGGCGGACCTGGTCCGGGTCTCCGCCGCGATCCCGCGCGCCGCGCCGCGCACCTTCGCGCTGCTCACCGCCTGCCTCG
TCTTCCCGCTCTCCTTCGCCGTGCTGGCGCACTCCCTCTTCACCCACCCCATCCTCCGCCGCATCCGCACCTCCGACTAC
ACCGCCACCTCCGCGCAGTGGGTCGCCCTCTTCGCCTACCAGTTCCTCTACCTCATCTTCCTCTTCACCTTCTCGCTCCT
CTCCACCGCCGCCGCCGTCTTCACCGTCGCCTCCCTCTACGCCGCCAAGCCTGCCTCCATCGCCTCCTCGCTCTCCGCGC
TGCCGCCCATCCTGCCCCGCCTCCTCCGCACCTTCCTCTGGGTCTCGCTCCTCATGCTCGCCTACCACGTCGGCTTCGTC
CTCACCGTCGTCCTCCTCATCCTCCTCTTCGACCCGCCCATGACCGCCTCCACCCCGCCGCCCCTCTCCTTCCTCCTCGC
CCTCCTCGCCGTCGCCTTCCTCTTCCTCGCCATCCACGTCTACATCTCCGCGCTCTGGCACCTCGCCAGCGTCATCTCCG
TGCTCGAGCCCCTCTGCGGCCTCGCCGCCATGTCCAAGAGCAGGCAGCTCCTCCAGGGCCGCACCCGCACCGCCGCCGTC
CTCGTTTTCTCCTACTTCGCCATCTGCGGCCTCATCACGGGGATGTTCCGTTCGGCCGTCGTCAAGGCGCGGGGCGAGGA
GGGGAGCCTCGACATGAGCTTGGCCGGCCGGATAGGCGTCGGCGCTCTGCTCGTCTCTGTTCTCGTCTGTGTCAATCTCT
TGGGGCTGCTCGCGCAGAGCGTCTTCTACTACGCCTGCAAGGCCTACCACAACCAGGAGATCGACAGGACCGCGCTGTAC
GAGCACCTCGGCGGCTACCTTGGCGAGTATGTGCCGCTCAAGAGCAATATCCAGATGGAGAACCTGTGAGATTCGTCGTA
AGCTGCTCACTTGCCTGCTCCTTACAAATACTAGCTGTCCTGCTGGATCTTGCTCTAAAGAAGAGCATGCCGTTGCCAGG
A-----------TT-----------TCTTGTTTCTAGTTTATTGTGCTTGCCTGTTGTAATCTGTAATTAATAATAATGC
GCAGTATGGACTGATCTGTGGTATGGAACATAAAGGAAGTTCTCATTCCGCTGCAAAATCCT-----------CTGTGTT
TGTTACTCCCTCTGTCAACTTATATAAGACGTTTTGGTAGTTCAAATTGATTTAGTGGTAAGTTGACAGAGGTAGTACTT
ATTATTCTTGGCTCATGGTTACTGATTGATTTAGTGGTAAGAGTGGAGGTTAGCATTGCGATATCGAGTTATTATTCTCT
TTACCAATTTGAGGAGTTCATGATTGTTGATGCTCTTATTCTTCCCCTGTCGTGACACTTAGAAAAGCAATT----GT--
-----------------------------------------------------------------------------GTA
GAATTGATGATGACTGTCTTGACACTTAGAATAGCAATCGTGCAGGACTATTATTTTGAGTTCTTAGGCATGGTTGGAGT
GGAGATGACCAGTTTTTTGTGGGAGTTTGGGAGATAAACTGCACTATTATTTTCATGTTACAGGACTGGTCCTGTTATGC
ACTTCTATAGTTTAGACAGAGAACTATCTAACAAATGTGCACAATGGTTTCAACAAAATAAATGTGCACAATTAGCTTTG
TTGTTAGAGAAAGAGAGGTGTAAAATTTGAGGAAGAGTGCACAGTAAACCATTACTGATGCATTCCTTTCAGCTTCTATA
CTCAATTGTGTTGGAATATGTTTCTGAAGTACTCCCTCCGTAAACTAATATATTTTAGTGATCTAAACGCTCTTATATTA
GTTTACAGAGGGAGTAGTTGTCAAAATCAGTATGTTCCTGTTTTGTCATAACATTGTGCAGTTTATCTTATTATTTACCT
GTGATCTTGTTGTTTTTAATTTGGTATATTCTTGTAGCAAGTTGCAACCATTAGAATTCATCCTTGTTATG-TTTTTTAT
CACCGTGCTAGGAAGCAAAGCTTGTTGAAATGAATGCACGCTCTCTTGTACTGTGCTAGTAAAATATGCCATGTTTCCAG
TTTGTTGCTT----GATTGAATTGAATCAATTTTAAGTTTAGA-ATATGCTATTTCAAGGATTGCTTTGATC-
>chr3B_21
--------------------GCAATTAGCTAGCAATGATAGCTTGGGTCGCTGGCAGTGTCGAAGGAGAAAATCTCCATG
ACGGCCTTTCCCTTCACGGCCTCGACAATGTCCTCCTCGTCTATCCCAGCCTTTAACTCAGCGAGTGTGGCATGCGCCTC
CTTCTTCCAAGCCTCGGCCTCAAGTGGCAAGAAGCTATGAGACGGGGTGCCGACATGGAGAGACAGGCGGAGACAAAGGT
GGACAAGCGATGTGTTTCGGGGACATATATGTGCACTATTAGGAACCATGATGTGGCGTCAGGGATAGCGATTAGGTCAG
TGATGGGGCGGGGAGGCATGAGGGAATGTTGGCGCGGGTGGCAAACATCATGGGTGGCGATGGGGCAGCTTCACTTTGCG
AATCTCGCCCGTTCGACACCGAGCACAACTTCTTCCAACGCCACCATTAGCTAGCAACCTAGCTGGGGAAATTGTTGGCC
TGTTGGAACCAGCCCAATTTAGGATGTTGCTCTTGGATCGTGTTTGATGGGGCTCGGGCGTCAATGTTGTCGCCACATCG
GGGGTGGGCTTCTCCTTTAGGTGAGCTCGATGCTCCTGGCTGGCAGCGAGAGAATTGCACTAAAGGGACAATATCCGGCG
GGGGAGAGACTGGGATGGCCCTATCTGCCGACCGAGAGGCTCACATGCCGGCGACGGGGGGTAGCTGGGCGTGGTGGCGG
GGACCGACGTAGCTGAACGAGGGGTAGGGTTACGAGAGGGAGAGCTGCTGAGGGAGATGGGTGTAGAGATTCGTGAGAGA
TGTCAAGGGATGTGTTTCCCCTCTTTTAGAGCCTGTCTGGGACTGCTCCGTGTCACCAAAATTAGCTGCACTCCATGAAA
TTTACTTTGGAGCTGTTTTATACAAGAGTTATAGCTCCACCAAAGAGCAGTTTATCATGTTTGGCTTTTAGCTTTAAGAA
TAAGAAATTTGATGGAAATGATCTTTTGATTGGACTAGTAAATATGTACGTGCAATGCACGTTGATATTAGGTAATATAT
TAATTACATGTAAATATTAGGTAGGATATTATTTACGTATTAATTATGTGATTAGCATGTGCATTAATATTTGGTATGAT
ATTAGCTGCACACTAAACATGTTGAGCGCTCACCATTGGAGCAGCCTGAGTCGTTGGATTGACCTAATTTGATGGCCGGG
ATTTGTTGGATCTGCCCATTTTGATCTTTTTATATTGGTATAGATATAAATGATATGGGGAAAACAATCCACTTACTGGT
GGTAGTGGTTGGTGATTCCATCCAACTCCAACTTCTAGAGTTTTTGGAGCACCCTTGAGGCCCCGATTGGATTGTTGTTT
ATTTCCTACACCCGTAAATTCCTACGTCTGGATTTTACTGGTCCCCAACGAAATACATTCCATGAGTGGTATTTGCAAAA
CGGATGGGCTGAGGAGTGTATCAGAAACCAGCCCACTACAGATACGGGCGTAATAATTACGTTCTGGAAACAACATTCCA
AGCGCGCGGACTGCTCATCCATCGTTTTCTTAACAAAGGTGTATTTTACAAGTGTAACCAGCTGGAAAACGACACTCCAA
ACGCGGCCTGAAGAGTTTTAGAAAAAAAACGGGGAGTTCTAGTTCTTTTTGTGGGGTTAGCCCGTTTGGTTTGTATTTTC
TTGTGCAGAGCTAAATTTTATAGTGCAGAAACTCCCCAAAAAAGCTCTTAAGGTAGGGTAGAAGGCACCGATTGATGGAG
TTCGAGTCGGCTGCGCACGTGGAGTTTGTTGAGGTGGAAGCTGAAGAGGATCCGGACAATGCCCTTACCCCACCTTTCTC
TAAATATAAATACTACTCCCCCTGTAAAGAAATATAAGAGCATTCCGTGATCTAAATGCTTTTATATTTCTTTACGGAGG
GAGTGGGAGGGGTCCTTTCTCTAAATATAAATACAAGGAGGGGCCCATTCTCTAAATATAAA---TACAAGGAGGGGCCT
TAGGGAATCTTTTTGAGTAGTATTTCTTCAATTTATTTTGACATTTTTTCAGGTAGGGGGCCA-----------------
--------------------------------------------------------------------------------
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---TAGAAAGTCG-TAGAGCGCCCCCTCGTGGTTCCCGTTTGGTGATACTTGGCGTCGAAGTCACCCGCGGCCGTCACCT
TTTTTTTTTCTGCCGCGGCCCTCACTCGTGGTCCGTCGCGCAGCGCGGGCGATTACCACATGAGCCCAAGCCCTGCCGCC
TCCCGTGCGCCTCGCGGATCTTCATCCATCCCGGACCGCCTGCCCTCGTCGCCTGGCGCCACGCGCGCCCACAAGAACCC
TCTCGACACGGGGCCGGGCAC-----------------------------CCCCCTATCCCTTCCCCGATTCGAGC----
-GAGCCCGACGCC----CCCCACCGACCGCGCCTTCCCCACCACACCGCAGCTCCGGCGGGCCCAAACCAAATCAA----
------TCGCCGGATCCCCCTCCCCCTTCTCCCTCTCCACCGCCCATGGAGCTGGCGACGCGCGATCTCGCGGCGCTCGG
CGCGGCGGACCTGGTGCGGGTCTCCGCGGCGATCCCGCGCGCCGCGCCGCGCACCTTCGCGCTGCTCACCGCCTGCCTCG
TCTTCCCGCTCTCCTTCGCCGTGCTCGCGCACTCCCTCTTCACCCACCCCATCCTCCGCCGCATCCGGACCTCCGACTAC
ACCGCCACCTCCGCGCAGTGGGTCGCCCTCTTCGCCTACCAGTTCCTCTACCTCATCTTCCTCTTCACCTTCTCGCTCCT
CTCCACCGCCGCCGCCGTCTTCACCGTCGCCTCCCTCTACGCCGCCAAGCCGGCCTCCATCGCCTCCTCGCTCTCCGCGC
TGCCGCCCATCCTGCCCCGCCTCCTCCGCACCTTCCTCTGGGTCTCGCTCCTCATGCTCGCCTACCACGTCGGCTTCGTC
ATCACCGTCGTCCTCCTCATCCTCCTCTTCGACCCGCCCATGACCGCCTCCACCCCGCCCCCGCTCTCCTTCCTCCTCGC
CCTCCTCGCCGTCGCCTTCCTCTTCCTCGCCATCCACGTCTACATCTCCGCGCTCTGGCACCTCGCCAGCGTCATCTCCG
TGCTCGAGCCCCTCTGCGGCCTCGCCGCCATGTCCAAGAGCAAGCAGCTCCTTCAGGGCCGCACTCGCACGGCCGCCGTC
CTCGTTTTCTCCTACTTCGCCATCTGCGGGCTCATCACGGGGATGTTCCGTTCGGCTGTCGTCAAGGCGCGGGGCGAGGA
GGGGAGCCTCGACATGAGCTTGGCCGGCCGGATAGGCGTCGGCGCTCTGCTCGTCTCTGTTCTCGTCTGTGTCAATCTCT
TGGGGCTGCTCGCGCAGAGCGTCTTCTACTACGCCTGCAAGGCCTACCACAACCAGGAGATCGACAGGACCGCGCTGTAC
GAGCACCTCGGCGGCTACCTTGGCGAGTACGTGCCGCTCAAGAGCAATATCCAGATGGAGAACCTGTGAGAT---TCGTA
AGCTGCTCACTCGCCTGCTCCTTCCAAATACTAGCTGTGCTGTTGGATCCTGCTCTAAAGAAGAGCGTGGCATTGCCAGG
ACTTCATTTAGTTT-----------TCTTGTTTCTAGTTTATTGTGCTTGCCTGTTGTAATCTGTAATTAATAATAATGC
GCAGTATGGACTGATCTGTGGTATGCAACATAAAGGAAGTTCTCATTCTGCTGCAAAATCATGTTCTTCTTTACTGTGTT
TGT------------------------------------------------------------------------TACTT
ATCATTCTTGGCTCATGGTTAG---TTGATTTAGTGGTAAGAGTGGAGGTTAGCATTGTGATATTGAGTTATTATTCTCT
TTGCCAGCTTGAGGAGTTCATGATTGTTGATGCTCTTACTCTTTCCCTGTCGTGACACTTAGAAAAGCAAGCAACCGT--
-----------------------------------------------------------------------------GTA
GAATTGATGATGACTGTCGTGACATTTAGAAAAGCAATCGCGCAGATGCA--GTTTTGATTTCTTAAGCATGGTTGGAGT
GGAGATGACCAGTTTTTTGTGGGAGTTTGGGAGATAAACTGCACTATTATTTTCATGTTACAGGACTGGTCCTGTTATGC
ACATCTATAGTTTAGGCAGAGAACTATCTAATAAATGTGCACAATAGTTTCAACGAAATAAATGTGCACAATTAGCTTTG
TTGTTAGAGAAAGAGATGGGTAAAATTTGAGGAGT---------------ATTACTGATGCATTCCTTTCAGCTTCTATA
CTCAGTTGTGTTGGAATATGTTTCTGAAGTACT-----------------------------------------------
------------------TGTCAAAATCAGTATGTTCCTGTTTTGTCATAACATTGTGCAGTTTATCTTATTATTTAGCA
GTGATCTTGTTGTTTTTAATTTGGTTTATACTTGTAGCAAGTTGCAACCATCAGAATTCATCCTTGTTATG-TTTTTTAT
CACCGTGCTACGAAGCAAAGCTTGTTGAAATGAATGCACGCTCTCTTGTACTGTGCTAGTAAAATATGCCATGTTTCCAG
TTTGTTGCTTACTCGATTGAATTGAATCAATTTTAAGTTTAGATATATGCTATTTCAAGGATTGCTTTGATC-
>chr3D_783
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TTTTTTTTTTTGCCGCGGCCCTCACTCGTGGTCCGTCGCGCAGCGCGGGTGATTACCACATGAGCCCAAGCCATGCCGCC
TCCCGTGCGCCTCGCGGATCTTCATCCATCCCGGACCGCCTGCCCTCGTCGCCTGGCGCCACGCGCGTACAC---AACAC
GCTCGACACGGGGTCCATCCATCCACCCAAACACCCTGCCAAGT----TTCCACCTATCCCTTCCCCGATTTGATTGAGT
TGAGCCCGACGCCCCCACCCCACCGACCGCGCCTTCCCCACCACACCGCAGCTCCGGCGGGCCCGAACCAAATCAA----
------TCGCCGGATCCCCCTCCACCT---------CCACCGCCCATGGAGCTGGCGACGCGCGATCTCGCGGCGCTGGG
CGCGGCGGACCTGGTGCGGGTCTCCGCCGCGATCCCGCGCGCCGCGCCGCGCACCTTCGCGCTGCTCACCGCCTGCCTCG
TCTTCCCGCTCTCCTTCGCCGTGCTGGCGCACTCCCTCTTCACCCACCCCATCCTCCGCCGCATCCGGACCTCCGACTAC
ACCGCCACCTCCGCGCAGTGGGTGGCGCTCTTCGCCTACCAGTTCCTCTACCTCATCTTCCTCTTCACCTTCTCGCTCCT
CTCCACCGCCGCCGCCGTCTTCACCGTCGCCTCCCTCTACGCCGCCAAGCCGGCCTCCATCGCCTCCTCGCTCTCCGCGC
TGCCGCCCATCCTGCCCCGCCTCCTCCGCACCTTCCTCTGGGTCTCGCTCCTCATGCTCGCCTACCACGTCGGCTTCGTC
GTCACCGTCGTCCTCCTCATCCTCCTCTTCGACCCGCCCATGACCGCCTCCACCCCGCCCCCCCTCTCCTTCCTCCTCGC
CCTCCTCGCCGTCGCCTTCCTCTTCCTCGCCATCCACGTCTACATCTCCGCGCTCTGGCACCTCGCCAGCGTCATCTCCG
TGCTCGAGCCCCTCTGCGGCCTCGCCGCCATGTCCAAGAGCAGGCAGCTCCTCCAGGGCCGCACTCGCACCGCCGCGGTC
CTCGTTTTCTCCTACTTCGCCATCTGCGGGCTCATCACGGGGATGTTCCGTTCGGCTGTCGTCAAGGCGCGGGGCGAGGA
GGGGAGCCTCGACATGAGCTTGGCCGGCCGGATAGGCGTCGGCGCTCTGCTCGTCTCTGTTCTCGTCTGTGTCAATCTCT
TGGGGCTGCTCGCGCAGAGCGTCTTCTATTACGCCTGCAAGGCCTACCACAACCAGGAGATCGACAGGACCGCGCTGTAC
GAGCACCTCGGCGGTTACCTTGGCGAGTACGTGCCGCTCAAGAGCAATATCCAGATGGAGAACCTGTGAGAT---TCGTA
AGCTGCTCACTCGCCTGCTCCTTCCAAATACTAGCTGTGCTGTTGGATCTTGTTCTAAAGAAGAGCATGGCGTTGCCAGG
A-----------TTTTATTTAGTTTTCTTGTTTCTAGTTTATTGTGCTTGCCTGTTGTAATCTGTAATTAACAATAATGC
GCAGTATGGACTGATCTGTGGTATGCAACATAAAGGAAGTTCTCATTCTGCTGCAAAATCCTGTTCTTCTTTACTGTGTT
TGTTA-------------------------------------------------------------------TACTACCT
ATCATTCTTGGCTCATGGTTAG----TGATTTAGTGGTAAGAGTGGAGGTTAGCATTGTGATATCGAGTTATTATTCTCT
TTACCAGTTTGAGGAGTTCATGATTGTTGATGCTCTTATTCTTCCCCTGTCGTGACACTTAGAAAAGCAACCATGTACTC
CCTCCGTCCCATAATATAAGAACGATTTTGGCACTACACTAGTGTAAAAAACGTTCTTATATTGTGGGACAGAGGTAGTA
GAATTGATGATGACTGTCGTGACACTTAGAAAAGCAATCGTGCAGATGCA--ATTTTGATTTCTTAAGCATGGTTGGAGT
GGAGATGACCAGTTTTTTGTGGGAGTTTGGGAGATAAACTGCACTATTATTTTCATGTTACAGGACTGGTCCTGTTATGC
ACTTCTATAATTTAGGCAGAGAAATATCTAATAAATGTGCACA---------------------------ATTAGCTTTG
TTGTTAGAGAAAGAGATGGGTAAAATTTGAGGAAGAGTGCATGGTAAACCATTACTGATGCATTCCTTTCAGCTTCTATA
CTCAATTGTGTTGGAATATGTTTCTGAAGTAGT-----------------------------------------------
------------------TGTGAAAATCAGTATGTTCCTGTTTTGTAATAACATTGT-------------TTCTTTACCA
GTGATCTTATTCTTTTTAATTTGGTATA--CTTGTAGCAAGTTGCAACCATTAGAAGTCATCCTTGTTATGTTTTTTTAT
CACCGTGCTAGGAAGCAAAGCTTGTTGAAATGAATGCACGCTCTCTTGTACCGTGCTAGTAAAATATGCCATGTTGCCAG
TTTGTTGCTTACTTGATTGAATTGAATCGATTTTATGTCTAGATATATGCTGTTTCTAGGATTTGTTTTGGTC
>SNPs
SSSSSSSSSSSSSSSSSSSS-------------------------------------------S---------S-----S
-S------------S--------S-------------------------S-----S---S------S-------S-----
-S--------------S-------------------SSSSSSS-S-SSSS------------------------------
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--S----------S-S--SS-----------S-----S------S-S--------S--S-SS------------------
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--------------------S-S----S--S----S--S---SS-S-SS-SSSSSSS-SSSSSS-SSSS--S-S--S-S-
SSSSSSSSSSSSSSSS-S--------------------------------------------------------------
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----------------------------------S-S---S--S--S---S-----S-----SSS---S------S----
S-------------S-S--S-----S--S---SSSSSSSSSSSS-SSSS-S---SSSS-SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS----------S--------------------------S----------SSSSSSSSSSS------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------SSSS--------------------------------
--------------------------------------------S---------------------------S---SSSS
SSSSSS-----------------------------SS-------------------------------------------
---------------S----------------------------------------------------------------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
S----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
-----------------------------S--------------------------S-----------------------
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-----------------------------S------------------------------------------SSS-----
-----------S-----------S--------------S---S--------------------------S----------
--------------------------------------------------------------------------------
-------------------------S----------------------S-------------------------------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----
--S------------------SSSS---------------------------------S---------------------
------S---------------------------------------------------------------SS--------
--------------------------------------------------------------------------------
------------------S------------S-------------SSSS-SS-------S------S-------------
--------------------------------------------------------------------------------
---------------S---------------S-------------S--------S-------------------------
----------------S-S----------------------SS-------------------------------------
---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS-------------------------------------------------------------S
-----------------------------S--------------------------------------------------
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-------------------------------------------------------------------------
>forward_2321
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-------------------------------------------------------------ACTCCCACTATGACCAGCC
T-------------------------------------------------------------------------------
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>reverse_3710
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-----------------------------TGTGCCGCTCAAGAGCAATA-------------------------------
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>forward_2718
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----------------------------------------------------------GGGCCCAAACCAAACCAAAT--
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>reverse_4387
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------------------------------------------------------------------GGCATGGTTGGAGT
GGAGAT--------------------------------------------------------------------------
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