>input_sequence_56877
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----------------------------------------CTATAAATAACCTAGCGCGGAGATGTCTCTCAATTCGTAT
CAGTAGCAGCTGTCAACATAGCT--ACGTAGACACGCACACACACGTGGAGGAGCTAGAGATCGATCGATCGCGAGTAGG
CCGGAGAGGAGAGTTCATGGCCGCCACCGCCGCATGCCGGAGCATGGAGAGGAGATGGAGTCTTGCCGGATCCACGGCGC
TCGTTACCGGCGGCAGCAAAGGGATCGGGTACATACTTCACTCTGAGTC---AGTACCATCTATGC---TATTACATGGG
TGTTTATACG--TTACAGAATTAACGCGCTATATGTACTTGCATGGTGCGGCATGGATCAACAGGCATGCGATCGTGGAG
GAGCTAGCGGGGCTCGGGGCTCGGGTGCACACGTGCTCCCGGAACGCGGCGGAGCTGGACGAGTGCCGGCGGCAGTGGGA
GGACAAGAACCTCCG------CGTCACCGTCTCCGTCTGCGACGTGTCCGTGCGTGCCGAGAGGGAGAAGCTCATGAACA
CGGTGAGGCAAACCCTGGGCGGTAAGCTGGACATCCTGGTGAACAACGCGGGGCAATCCATGGTGAAGGCGGCGACGGAG
TGCACCGGCGAGGACTACGCGCTGGTGATGGCCACCAACATCGAGTCGTGCTTCCACCTCGCGCAGCTCGCGCACCCGCT
CCTCCTCCGCTCGG---GTGGAGGGGCGAGCAGCATCGTCCACGTCTCCTCCATCGCCGGCTTCGTCGGCTTCCCGGGCC
TCGCCGTCTACTCGATGACCAAGGGGGCGATGAACCAGCTCACCCGGAGCCTTGCCGCCGAGTGGGCCGGCGACGGCATA
CGCGTCAACTGCGTCGCGCCGGGCGGCATCAACACTGACATCGCCAAAGACATGGTACTTGATTAAAGATTATCAGGATC
AATCCCTTTATATATTTAACTGAGATCTTCTACCAGTTCCAGATACTCCTTAATAACGGCTATAACTTCTATTTCGTTTT
TGTGATGTGCGTCGAGCAGATAACGAGGGACCCGGAGATTGTGAAGCGCCAGGCCACGCAGCTGCCGATGCAGCGGCTGG
GCGAGACGGAGGAGGTGGCATCGGTGGTGGCCTTCCTCTGCATGCCAGCGGCGTCCTACATCACCGGCCAAGTAATCTGC
GTCGACGGCGGACGCACCATAGCATAAAATCGCGCCGAACGTCCTATACCGATAAGAAGTCA-----CA--TCGTTCAAA
GCTGTTGCACGGGTACAA--------------------------------------------------------------
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>chr2B_1_TraesCS2B01G386600
AACTTTATGTCTTGCTATCACACCCTCTTATTTGATCTGATCAAAGGCTAGCTAGCTGCTACAGTGCCTGGCCGGCCTGC
ATGCAGTAACTACACAAACATGTATTACTGTCCCTTACGAGGGCCAGACGCCAAGGACCCTGGCGTCTGGACTTTTACCA
GGACCAGACGTCAAGGACCCTGGCGTCTGGCCCCTTTGCCACGTCAGCCGGTCAACGTGGTCGCGGGTCGTGCGGGCCAG
GGACCAGATGCCAGGGTCCCTGGCGTCTCCAATGCAACACAGACGTCAGGAATGTTGGCGTCACCAAAAAAGGTCAGATT
AGGAATTTTTTTGTAACCGAGGTCAATTCGAGAATTTGTTAGCACAAAGGGTCAAAACAGTGATTTTGTCCGCCAGCTTG
TAGTGGCCGGCCGTCTTGTAGTGCTGCGTATCCCTTCATATCCGGCCGTCAGAGATCTCGAACAGGCAAACAGCTAGGTC
TTAGTTAATTATCAGCGACGACTTCTGCACCTCCTATCCCGTCATCCATCACGTACACGCTAGCTAAGACGTAGGCGGGC
CGTAAAACTTTAAATATTACTTCCTTCGTCCCGTGACTCAATTTTGTACTAAATTTAGTATAAAGTTGAGTCATTTAATT
TGAAACGGAGCGAATATATCTTTGTTGAGTTGGATGAGAGGGAAAAGAAGAAAGAAGTTAAGCGGACTGACGGTAGCACG
GGCTACAAGAAGCTATGTGAGATTGTATGTTGGGCCATGTGGTAGAAAAATACTCCCTTCATCTGAAAATATTTGTCGGA
AGAATGAATGTATCTAGACGTATTTTAGTTCTAGTTATATCCATTTTTATGCATTTCTTCGGCAAGTATTTCCGGACGGA
GGGAGTAGTACTTTCTTATAGCCCACTACTATACATATTGGTTATTACTACATTGGTTATTAGGAGTAGATGACATGGCA
AGACCATCAATAGGCTATATTATTAAACATGCTCTGAGTACTATAAATAACCTAGCGCGGAGATGTCTCTCAATTCGTAT
CAGTAGCAGCTGTCAACATAGCT--ACGTAGACACGCACACACACGTGGAGGAGCTAGAGATCGATCGATCGCGAGTAGG
CCGGAGAGGAGAGTTCATGGCCGCCACCGCCGCATGCCGGAGCATGGAGAGGAGATGGAGTCTTGCCGGATCCACGGCGC
TCGTTACCGGCGGCAGCAAAGGGATCGGGTACATACTTCACTCTGAGTC---AGTACCATCTATGC---TATTACATGGG
TGTTTATACG--TTACAGAATTAACGCGCTATATGTACTTGCATGGTGCGGCATGGATCAACAGGCATGCGATCGTGGAG
GAGCTAGCGGGGCTCGGGGCTCGGGTGCACACGTGCTCCCGGAACGCGGCGGAGCTGGACGAGTGCCGGCGGCAGTGGGA
GGACAAGAACCTCCG------CGTCACCGTCTCCGTCTGCGACGTGTCCGTGCGTGCCGAGAGGGAGAAGCTCATGAACA
CGGTGAGGCAAACCCTGGGCGGTAAGCTGGACATCCTGGTGAACAACGCGGGGCAATCCATGGTGAAGGCGGCGACGGAG
TGCACCGGCGAGGACTACGCGCTGGTGATGGCCACCAACATCGAGTCGTGCTTCCACCTCGCGCAGCTCGCGCACCCGCT
CCTCCTCCGCTCGG---GTGGAGGGGCGAGCAGCATCGTCCACGTCTCCTCCATCGCCGGCTTCGTCGGCTTCCCGGGCC
TCGCCGTCTACTCGATGACCAAGGGGGCGATGAACCAGCTCACCCGGAGCCTTGCCGCCGAGTGGGCCGGCGACGGCATA
CGCGTCAACTGCGTCGCGCCGGGCGGCATCAACACTGACATCGCCAAAGACATGGTACTTGATTAAAGATTATCAGGATC
AATCCCTTTATATATTTAACTGAGATCTTCTACCAGTTCCAGATACTCCTTAATAACGGCTATAACTTCTATTTCGTTTT
TGTGATGTGCGTCGAGCAGATAACGAGGGACCCGGAGATTGTGAAGCGCCAGGCCACGCAGCTGCCGATGCAGCGGCTGG
GCGAGACGGAGGAGGTGGCATCGGTGGTGGCCTTCCTCTGCATGCCAGCGGCGTCCTACATCACCGGCCAAGTAATCTGC
GTCGACGGCGGACGCACCATAGCATAAAATCGCGCCGAACGTCCTATACCGATAAGAAGTCA-----CA--TCGTTCAAA
GCTGTTGCACGGGTACAAATAAATTGTATCTTATCATACATGGCAATGTACTCCCTCTGTCCCAAAATAAGTGAAGTGTC
TTAAAGTTGAGACACTTATTTTGAGACGGAGGGAATATCTTTTATAGCTAAACCCTGCGCATACGTGGTACTTTCTCCGT
CTTAAAATAAGTGTAGTTGATTAAGTACAAAATTTATAAGTACTAATAAAATACCAAATCATCTACACTTATTTTGAAAC
GGAGCGAGTATATGACTATTGTTTTCTCAATGTATTATTAGCTAAACATATACCCGTGTGTTGCCATGAAAGAAAAAATT
GCATTTGCACCCCTAGCCAAGGTTTTGGATACTGAACGGTGCATTTTTACCGAGGGTGACCGGTAAACGTGGTTACCATG
AAATTTCGAGCAAATTTTGAACGAAATTTATAATTCAAATTCTTTTTAAATAGATATAGATAGCACTTGAACTTATATTT
ATCATAAAAGAGCTACTAGCTCAGTGGAATGTTGTCTACGCTAGTGCTGTGAGGTGCTGCCACACTTTACTATACATTGA
GCGTTTGAATTCAACAAATTCAAAAAAAATTGCTCGAAATGACCATTTACCGAGGGGGAACGAAATATGTGGTGACCATG
GCAAATCTTGGAATCTCGAGCGGTAACCAGAACCATGTCCCTAGCATAATATTACGCAAAATGAAGCACCTATGACTCAT
CATAAATCTCATTCATGGATGATGTTAGCGTGTAGTAGTGAATTTGTTCGTCGCTCCTCTCTGATATGTTGTTTTAGCAC
ACCTTCCGATCTTTGTTGCTTGCATTCCTTTTTGGATGATCTAGGTCTTTTTAGGCAAACCTACATAGCTTTATTAATCC
GTCACAATGTTTAAGAGTTCAACAGGGTGACCTAACCAAACATGACCTAGTGTGCATTCTTGTTTTTTCTTGGGTTGGAC
TTGGCCTACTGATTTTTTGTGTTCTACAATAAGACGCTTGATGCGAATTGCTAGTTGC
>chr2D_392
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-----------------------------------------------------------------------GCCAGCTTG
TAGTGGCCGGCCGTCTTGTAGTGCTGCGTATCCCTGCGTATCCGGCCGTCAGAGATCTCGAGCAGGCAAACAGCTGGGTC
TTAGTTAATTATCTGCGACGACTTCTGCACCTCCTAT-CCGTCATCCATCACGTACACGCTAGCTAAGTACTATGCTATA
AGT-----------------------------------------------------------------------------
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----------------------------------------------ATAAGCTAGCACGGGGATGTCTCTCAATTCGTAT
CAGTAGCAGCTGTCAACATAGTTACACGTAGACACGCACACACACGTGGAG---CTAGATATCGGTCGATCACCAGTAGG
CCGGAGAGGAGAATTCATGGCCGCCACCGCCGCATGCCGGAGCATGGAGGGGAGATGGAGTCTTGCCGGCTCCACGGCGC
TCGTTACCGGCGGCAGCAAAGGGATCGGGTACGTACTTTACTCTGAGCTATTAGTACCATCTATGC---TATTACATGGG
TGTTTATACG--TTACAGAATTAACGCGCTATACGTACTTGCATGGTGCGGTATGGATCAACAGGCATGCGATCGTGGAG
GAGCTGGCGATGCTCGGGGCTCGGGTGCACACGTGCTCCCGGAACGCGGCGGAGCTGGAGGAGTGCCGGCGGCGGTGGGA
GGACAAGAACCTCCG------GGTCACCGTCTCCGTCTGCGACGTGTCCGTGCGCGCCGAGAGGGAGAAGCTCATGGACA
CGCTGAGGCAGACCCTGGGCGGGAAGCTGGACATCCTGGTGAACAACGCGGGGCAGTCCATGGTGAAGGCGGCGACGGAG
TGCACCGGCGAGGACTACGCGCTGGTGATGGCCACCAACATCGAGTCGTGCTTCCACCTCGCGCAGCTGGCGCACCCGCT
CCTCCTCCGCTCGGCGGGTGGTGGGGCAAGCAGCGTCGTCCACATCTCCTCCATCGCCGGCTTCGTCGGCTTCCCGGGCC
TCGCCGTCTACTCGATGACTAAGGGGGCGATGAACCAGCTCACCCGGAGCCTTGCCGCCGAGTGGGCCGGCGACGGCATA
CGCGTGAACTGCGTCGCGCCGGGCGGCATCAACACTGACATCGCCAAAGACATGGTATCTGATCCCTT------------
------------TATGTAACTGTGATCTTCTTGG------AGAAACTTCTTAATAACGGCT--AACTTCGATTTCGTTTT
TGTGATGTGGGTCGAGCAGATAACGAGGGACCCGGAGATTGTGAAGAGCCAGGCCACGCAGCTGCCGATGCAGCGGCTGG
GCGAGACGGAGGAGGTGGCATCGGTGGTGGCCTTCCTCTGCATGCCAGCGGCGTCCTACATCACCGGCCAAGTCATCTGC
GTCGACGGCGGACGCACCATAGCATAAAATCGCGCCGAACGTCCTATACCGATAAGAAGTCA-----CACATCGTTCAAA
GCTCTTGGACGGATAAAAA--GATTG------------------------------------------------------
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>chr2A_392
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-----------------------------------------------------------------------GCCAGCTTG
TAGTGGTCGGCCGTCCTGTAGTGCTGCGTATCCCTTCATATCTGGCCGTCAGAGTTCTCGAACAGGCAAACAGCTAGGTC
TTAGTTAATTATCAGCGACGACTTCTGCACCTCCTAT-CCGTCATCCATCACGTACACGCTAGCTAAGTACTCGTA----
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--------------------------------------TACTATAAATAAGCTAGCACGGAGATGTCTCTCAATTCGTAT
CAGTAGCAGCTGTCAACA---TTACACGTAGACACGCACACACACGTGGAG---CTAGATATCGATCGACCGCCAGTAGG
CCGGAGAGGAGAATCCATGGCCGCCACCGCCGCATGCCGGACCGTTGAGGGGAGATGGAATCTTGCCGGCTCCACGGCGC
TCGTTACCGGCGGCAGCAAAGGGATCGGGTACGTACTTTCCTCTGAGTG---AACACCATTTATGCTATTATTACATGGG
TGTTATACGTTATTACAGAACTAATGCG---TATGTACTTGCATGGTGCGGTATGGATCAACAGGCATGCGATCGTGGAG
GAGCTGGCCGGGCTCGGGGCTCGGGTGCACACGTGCTCCCGGAGCGCGGCGGAGCTGGAGGAGTGCCGGCGGCAGTGGGA
GGGCAAGAACCTCCG------GGTCACCGTCTCCGTCTGCGACGTGTCCGTGCGCGCCGAGAGGGAGAAGCTCATGGATA
CGGTGAAGCGAACCCTGGGCGGCAAGCTGGACATCCTGGTGAACAACGCGGGGCAGTCCATGGTGAAGGCGGCGACGGAG
TGCACCGGCGAGGACTACGCGCTGGTGATGGCCACCAACATCGAGTCGTGCTTCCACCTCGCGCAGCTGGCGCACCCGCT
CCTCCTCCGCTCGGCCGGTGGAGGGGCGAGCAGCGTCGTCCACATCTCCTCCATCGCCGGCTTCGTCGGCTTCCCGGGCC
TCGCCGTCTACTCCATGACCAAGGGGGCGATGAACCAGCTCACTCGGAGCCTTGCCGCCGAGTGGGCCGGCGACGGCATA
CGCGTCAACTGCGTCGCGCCGGGCGGCATCAACACTGACATCGCCAAAGACATGGTATTTGATCCCTT------------
------------TATGTAGCTGTGATCTTCCTGG------AGAAACTCCTTAATAACGGCTGTAACTTCGATTTCGTTTT
TGCGATGTGCGTCGAGCAGATAACGAGGGACCCGGAGATTGTGAAGAGCCAGGCCACGCAGCTGCCGATGCAGCGGCTGG
GCGAGACGGAGGAGGTGGCATCGGTGGTGGCCTTCCTCTGCATGCCAGCGGCGTCCTACATCACCGGCCAAGTCATCTGC
GTCGACGGCGGACGCACCATAGCTTAAAATCGCGCCGAACGTCCTATCCGATAAAAACTTGAAAAGTCACATCATTCAAA
GCTGTTGTACGGATAAAAA--AATTGTGTCGAATCATACCATG-------------------------------------
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>chr4B_1333
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--------------------------------------------------------------AGGCTTGCCATCGTGGAG
GAGCTGGCCGGGCTCGGCGCCAAGGTGCACACCTGCGCACGCAACGCCGCCGGCCTGGACAAATGCCGGCGGCGATGGCA
GAGCAAGGGCCTCCACCAGCTGGTCACCGCCTCCGTCTGCAACGTCTCCGTGCGCGGCGACAGGGAGGCCCTCGTCGCCA
CGGTCCGCGACCTCTTCCACGGCAAGCTCCACGTCCTCGTCAACAACGCCGGCCTGTCCCTCTACAAGGCGGCCGCGGAC
ACCACGCCGGAGGAGTACGCCCGTCTCATGGCCACCAACCTCGACCCCTGCTTCCACCTCTCCCAGCTCGCGCACCCGCT
GCTCCGCCAGGCCGGGGCCTCCTCCGTGCTGCT---------CATCTCCTCCGTCACCGGCTACATCGCCTACCCGGCGC
TCTCGGTTTACTCGCTCACCAAGGGGGGCATGCACCAGCTCGCCAGGAGCCTGGCCGCTGAGTGGGCGACGCACGGCATC
CGCGTCAACTGCGTCGCGCCGGGCGGCATCGACACCGATATCTCCA----------------------------------
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>chr4D_1333
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--------------------------------------------------------------AGGCTTGCCATCGTGGAG
GAGCTGGCCGGGCTCGGCGCCAAGGTGCACACCTGCGCACGCAACGCCGCCGGCCTGGACAAATGCCGGCGGCGATGGCA
GAGCAAGGGCCTCCACCAGCTGGTCACCGCCTCCGTCTGCGACGTCTCCGTGCGCGGCGACAGGGAGGCCCTCGTCGCCA
CGGTCCGCGACCTCTTCCACGGCAAACTCCACATCCTCGTCAACAACGCCGGCCTGTCCCTCTACAAGGCGGCCGCGGAC
ACCACGCCGGAGGAGTACGCCCGTCTCATGGCCACCAACCTCGACCCCTGCTTCCACCTCTCCCAGCTCGCGCACCCGCT
GCTCCGCCAGGCCGGGGCCTCCTCCGTGCTGCT---------CATCTCCTCCGTCACCGGCTACATCGCCTACCCGGCGC
TCTCGGTTTACTCGCTCACCAAGGGGGCCATGCACCAGCTCGCCAGGAGCCTGGCCGCCGAGTGGGCGACGCACGGCATC
CGCGTCAACTGCGTCGCGCCGGGCGGCATCGACACCGATATCTCCA----------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
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-------------------------------------S------------------------------SSS-----SSSS
S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-----S-----------------------
---------------------S-----------------------------SSS-----S-------------S------
------------S------------------------------------S-------------------S----------
--------------------------------S-----S---------S-------------------------------
---------------------------------------------------S----------------------------
-----S--------------------------------------------------------------------------
---------------------S--------------------------------S---------------------S---
----------------------S--------------------------------S------------------------
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----------------------------------S--------S------------------------------------
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---------------------------------------------------------S-----SSSSSSSSSSSSSSSSS
SSSSSSSSSSSS---S------S--------SSSSSSSSS---S-----------------S-------S----------
----------------------------------------------S---------------------------------
-------------------------------------------------------------------------S------
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-------S----S--S---SS------S--SS-------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_884
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----------------------------------------------------------------AGTATTTCCGGACGGA
GGGA----------------------------------------------------------------------------
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>reverse_2604
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-------------------------------------------TTTTTACCGAGGGTGACCGG-----------------
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