>input_sequence_56846
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------A-TATAAAGAAAAAGTTTGCAGCTGTTTGCTACGAGCTTGGTTAGTTGGCTCGACGTTGCTTGGTGATATTTCC
CTGCGAGTGAAGTGATCTTTGTGTGTGCAAACA-----AAGCTCGTGGCAATGGGGAGGCAGCCGTGCTGCGACAAGGTG
GGGCTGAAGAAAGGCCCGTGGACGGCGGAGGAGGACCAGAAGCTCGTCAGCTTCCTCCTCAGCAACGGCCAATGCTGCTG
GAGAGCCGTCCCCAAGCTCGCCGGTGGGTCACTCACTGCCTGCACTTGC---------------TCGCCGGCCGGCTAGC
CGGCCGGTTAGCTTGACTAATTACATGCATGCATACTCTGGTCACGACCCACAGCCGACGACCTTTCTTTGATTGACCAA
TGTTTTGACGTGTTGTGACTTGCGTTTCTGTGAACAGGGTTGCTCCGGTGCGGGAAGAGCTGCCGGCTGCGGTGGACCAA
CTACCTTCGGCCGGACCTCAAGCGCGGGCTGCTCTCCGACGAGGAGGAGAAGACGGTGATCGACCTGCACGAGCAGCTCG
GCAACAGGTGGTCCAAGATCGCCTCCCACCTGCCCGGCCGGACCGACAACGAGATCAAGAACCACTGGAACACGCACATC
AAGAAGAAGCTGAGGAAGATGGGCATCGACCCCGCCACCCACAAGCCCCTCCAGCCTGCTGCTGTTGCTACCTATCAGCA
TCCGCAGCGGCCTACCGGTGGTGAATCGCCGGAGCAGAAGGTGCCGGCGGCGGCGGCCACGGGAAGTCAGTCAGGTGCCG
AAGAGGACATGTTCTGCCCCGACGAGGTGCCGACCATGATGCAACTTCTGGATAACATCATCTTGCCATGCGACGTCGTG
GAACCGGCGCCGCTCGACAGCAGCTGCGGCACGGCTTCGTCACCAGCCGAGTCGTCCTCGTCC------TCGTCGTCCGC
CTCGGCGGCGTCGAGCGGCGGCGGCGGC------TTCGAGGACGACTGGCTGCCGAAGATCATGGAGTGGCCGGTGGAGC
CGATGTTCATGATGGGACTGGACGTCGACGTGGTCACCGGGCCGACGTCGGCATGGGAGTTCGAGGACGCCTTCAACGCG
TACCAGAGGATCGCCCTGTTTGATCACCAGGAGACATGGGCTTGAACGAAGCAGCTCGTCGTCGTTGATACCAATATCAT
ATTCTTTATTATAACGAATGAGTAGTTGCCTTGCCGTATGCGATTGCGTGCTTATGTGTTAATTACTGCCCA--------
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-------------------------------------------
>chr5B_1_TraesCS5B01G203100
ATGCATACATCTTTTTTTTGTACACACCATACTGATCATGGGTGAGGGCATGCCTAGCGCAGTGGTGAAGTCCTCCCCAC
TTATGTCAAGAGATCCTGTGTTTGAACCAGTCTCTCTGCATTGCAATTTGCATGGGTAAGACTAGGCTCCTTTAATCCCT
CCCCAGACCCCAGCTTGTGTGGGAGCTTCTATGCACTGGGTCTGTCCTTTCTTTACCACACTGATCATGGGTGTGATCTA
AGTTGGAGCACAACATGTGTAAATTGTTATGCAGAAACTGCATTTTTGAGCCAACCCGATGGACACAACAAGTAAAAAAA
AAAATGCAATCACGCTACTCCCTCCGTTTCATAATTCTTGTCTTGGTTTTAGCTAAAACCACACCATGACAAGAATTATG
GAACGAAGGGATTACCATTTACCCTGTTATTTCAATTT---AAAAAACTACAAAATGAAGGACTTTGATACAATGGAGGC
CAATACAATTAGTATGTTTAGAAGCTAAACAAATGATAATGACTCGATGGAATGGACACATTACATGCCCCAAAATTAAT
CCCGTTGAAACCCCTTGATTGAGCAACAAACGAGGATCCAAATAAAAGCTTGAAAGCTTAGCAGGCCAGCACTTGCAACG
CAAGCAAAAGGGACCCATGAGCAGCAGCCCGGCAA----------------------------------AGCGGCGACGC
CGACGGCTGGGCCCCACGCGCCAGCCTCTGCGGCGCCACGACACGTCGTCCTTAGCTAGCTCCAGTACTGGTCCAAGGTC
CATC---CTCCGCGCGCACACGCGCTAGCCGCACTGCGATTCTATTTTT---TTTCTACTTCCGG---TTAGTCGCCAGT
TGATGGTGCCTCGGCTAAGCTTTTAGCCACCGGCCCCTTTGTCTTCTTCTCCCTCCCCCTCCTTTATAAAGGAAGGTGGC
AATGGCGTCTCACCATGTAGCTAAAGCTAAACCGCCATTTGCTAGCTAGCTATTGTGTACCTGTGCCACCAAAACAGAGC
TAAAAAA-TATAAAGAAAAAGTTTGCAGCTGTTTGCTACGAGCTTGGTTAGTTGGCTCGACGTTGCTTGGTGATATTTCC
CTGCGAGTGAAGTGATCTTTGTGTGTGCAAACA-----AAGCTCGTGGCAATGGGGAGGCAGCCGTGCTGCGACAAGGTG
GGGCTGAAGAAAGGCCCGTGGACGGCGGAGGAGGACCAGAAGCTCGTCAGCTTCCTCCTCAGCAACGGCCAATGCTGCTG
GAGAGCCGTCCCCAAGCTCGCCGGTGGGTCACTCACTGCCTGCACTTGC---------------TCGCCGGCCGGCTAGC
CGGCCGGTTAGCTTGACTAATTACATGCATGCATACTCTGGTCACGACCCACAGCCGACGACCTTTCTTTGATTGACCAA
TGTTTTGACGTGTTGTGACTTGCGTTTCTGTGAACAGGGTTGCTCCGGTGCGGGAAGAGCTGCCGGCTGCGGTGGACCAA
CTACCTTCGGCCGGACCTCAAGCGCGGGCTGCTCTCCGACGAGGAGGAGAAGACGGTGATCGACCTGCACGAGCAGCTCG
GCAACAGGTGGTCCAAGATCGCCTCCCACCTGCCCGGCCGGACCGACAACGAGATCAAGAACCACTGGAACACGCACATC
AAGAAGAAGCTGAGGAAGATGGGCATCGACCCCGCCACCCACAAGCCCCTCCAGCCTGCTGCTGTTGCTACCTATCAGCA
TCCGCAGCGGCCTACCGGTGGTGAATCGCCGGAGCAGAAGGTGCCGGCGGCGGCGGCCACGGGAAGTCAGTCAGGTGCCG
AAGAGGACATGTTCTGCCCCGACGAGGTGCCGACCATGATGCAACTTCTGGATAACATCATCTTGCCATGCGACGTCGTG
GAACCGGCGCCGCTCGACAGCAGCTGCGGCACGGCTTCGTCACCAGCCGAGTCGTCCTCGTCC------TCGTCGTCCGC
CTCGGCGGCGTCGAGCGGCGGCGGCGGC------TTCGAGGACGACTGGCTGCCGAAGATCATGGAGTGGCCGGTGGAGC
CGATGTTCATGATGGGACTGGACGTCGACGTGGTCACCGGGCCGACGTCGGCATGGGAGTTCGAGGACGCCTTCAACGCG
TACCAGAGGATCGCCCTGTTTGATCACCAGGAGACATGGGCTTGAACGAAGCAGCTCGTCGTCGTTGATACCAATATCAT
ATTCTTTATTATAACGAATGAGTAGTTGCCTTGCCGTATGCGATTGCGTGCTTATGTGTTAATTACTGCCCAGTAAAAGT
TCATCGGCGGTGCACCTAGTTGGCCATACTAGAACAATTAGAGGGAGAGGTAGTAAGAAAATAAGTGAAGACATGCATAA
CTACCCTGAATTCATTTGCTTTTCA--TTTGTCGTTCATCTTTCATCCTTCGAACTTTCGGCAAGTCTAGATTTGATACC
TCAACTCTTCT-AACGACATATGCGTGGGTGCAGCATGCACACATGCATGCAAAGTGAGATGATAGGAATCTGGATAATG
AAATGAAGGAAAATGGCGATGTTTTATATACATATACTCTGAAATGAAATGCAGTATAATGAAATGGAGTCGAAGATTGG
GTTATGCCTTATGCACACCGTTTTCTGTTATGGTTCATATTGTCTTTACTCCGCCTAGTTACACGTTGAGCATTTCTCCT
CCCTTTTTCGGATTTGAC---GAGCATTTCTAAGCTGATGAAAGGCATTATAACTTTATTATCGGCCACACAGAGGTCAT
AACATCTTGAGCATGGTTGGTTTGACTGGGTAACAAAATATTAGTACTACTAGCGAATCAATCTGTGGTTGAGTTGGTTA
GGTGGGCAGTGGTATCCCCAACTTACCAGGGTTCACATCCTGGTGCTCGCATTATTCCTGAATTTATTTCAGGATTTCCG
GCGATGCGCTTTCAGTGGGAGGAGACGTTCCCGTCGACGACGAGGTGCCTACGGTGACTTCGTAAATCTCAAGATGATAT
GCCGGCTCAGTCTCTCGGAGGTGCTCATAGGGGTAGGGTGTGTGTGTGCATTCATAGAGATGAGTGTATGCGCGTGTACA
TGAACGCTTGTGTCTGTACTGATGCTAAAAAAAAAAACATTCTGCGTCCATTTCACAGTATTAACTACTGCTAAAAAATG
TAAAATTGAACAGAAAATTACATGATCTATCGGCAGAGGAGTAAGGTCTCCTCAAATTCACCCTCCTTTTTTTT-----G
GAAAGTGCCAATAAGAACTCAGACGACTGCACTAGCACGTCCT
>chr5D_369
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------------------------------------------------TTACCTAAAACCACGCCATGACAAGAATCATG
GAACGGAGGGATTACCATTTAGCCCGGTATTTTTTTCAAAAAAAAAACTACAAAATGAAGGACCTTGATACAACGGAAGC
CAATACAATTAGCATGTTTAGAAGCTAAACAAATGATAATGACTCGATGGAATGGACACATTACATGCCGCAAAATTAAT
ACCATTGAAAACCCTTGATTGAGCAACAAACGAGGATCCAAATAAAAGCTTGAAAGCTTAGCAGGCCAGCACTTGCAACG
GAAGCAAAAGGGACCCATGAGCAGCAGCCCGGCAATGTCGGCGTCGCGGCTTTTTTTCCCTGAAAAAAAAGTGGTGACGC
CGACGCCAGGGCCCCACGCGCCAGCCTCCGCGGCGCCACGACATGTCATCCTTGGCTAGCCCCAATACTGGTCCAAGGTC
CATCGTCCTCCGCGCGCGCACGCGCTAGCCGCAATGCGATTCTATTTTTTTTTT-CTACTTCTAG---CTAGTCATCAGT
TGATG--------------------GCCACCGGCCCCTTTGTCTTCTTCTCCCTCCCCCTCCTTTATAAAGGAAGGTGGC
AATGGCGTCTCACCATGTAGCTAAAGCTAAAGCGCCATTTGCTAGTTAGCTATTGTGCACCCGTGCCACCAAAACAGAGC
TAAAAAAATATAAAGAAAAAGTTCGCAGCTGTTTGCTACGAGCTTGGTTAGTTGGCTCGACGTTGCTTGGTGATTTTTCC
TTGCGAGTGAAGTGATCTTTGTGTGTGCGAAGCGAACGAAGCTCGTGGCAATGGGGAGGCAGCCGTGCTGCGACAAGGTG
GGGCTGAAGAAAGGCCCGTGGACGGCGGAGGAGGACCAGAAGCTCGTCAGCTTCCTCCTCAGCAACGGCCAATGCTGCTG
GAGAGCCGTCCCCAAGCTCGCCGGTGGGTCACTCACTGCCTCCACATGCGCCTAGCTAGCTACTTCGCCGGCCGGCTAGC
CGGCCGGTTAGCTTGACTAATTACATGCATGCATGC------CACGACCCACAGCTGGCGACCTTTCTTTGATTGACCAG
TGTTTTGACGTGTTGCGACTTGTGTTTGTGTGAATAGGGTTGCTCCGGTGCGGGAAGAGCTGCCGGCTGCGGTGGACCAA
CTACCTCCGGCCGGACCTCAAGCGCGGGCTGCTCTCCGACGAGGAGGAGAAGACGGTGATCGACCTGCACGAGCAGCTCG
GAAACAGGTGGTCCAAGATCGCCTCCCACCTGCCCGGCCGGACCGACAACGAGATCAAGAACCATTGGAACACGCACATC
AAGAAGAAGCTGAGGAAGATGGGCATCGACCCCGCCACCCACAAGCCCCTCCAGCCTGCTGCTGCTGCTACCCATCAGCA
GCCGCAGCGGCCTACCGGTGGTGACTCGCCGGAGCAGAAGGTGCCGGCGGCGGCGGCCACGGGAAGTCAGTCGGGTGCCG
AAGAGGACATGTTCTGCCCCGACGAGGTGCCGACCATGATGCAACTTCTGGACAACATCATCTTGCCATGCGACGTCGTC
GAACCGGCGCCGCTCGACAGCAGCTGCGGCACGGCCTCGTCACCAGCCGAGTCGTCCTCGTCC------TCGTCGTCCGC
CTCGGCGGCGTCGA---GCGGCGGCGGC------TTCGAGGACGACTGGCTGCCGAAGATCATGGAGTGGCCGGTGGAGC
CGATGTTCATGATGGGGCTGGACGTCGACGTGGTCACCGGGCCGACGTCGGCATGGGAGTTCGAGGACGCCTTCAACGCG
TACCAGAGGATCTCCCTGTTCGATCACCAGGAGACATGGGCTTGAACGAAGCGGCTCGTCGTCGTTGATCCCAGTATCAT
ATTCTTTATTATAACGAATGAGTAGTTGCCTTGCCGTATGCGATTGCGTGCTTATGTGTTAATTACTGCCCAGTAAAAGT
TCATCGGCGGTGCACCTAGTTGGTCATACTAGAACAATTAGAGGGAGAGGTAGTAAGAAAATAAGTGAAGACATGCATAA
CTACCCTGAATTCATTTTTTTTTCA--TTTGTCGTTCATTTTTCATCCTTGGACCCTTCGGCAAGTCTAGATTTGATACC
TCAACTCTTCC-AACGACATATGCGTGGATGCAGCATGCGCACATGCATGCAAAGTGAGATGAGAGGAATCTGGATAATG
AAATGAAGGAAAATGACGATGTTTTATATACATATACTCTGAAATGAAATGCAGTATAATGAAATGGAGTAGAAGATTGG
GTTA-------TGCACACCGTTCTCTGTTATGGTTCATATTGTCTTTACTCCGCCTAGTTACACGTTGGGCATTTCTCCT
CCCTTTTTCGGGTTTGACATAGAGCATTGCTAAGCTGATGAAAGCCATTATAACTTTATTATCGCCCACACAGAGGTCAC
AACATCTTGAGCATGGTTAGTTTGACTGGGTAACAAAATGCTAGTACTGGT-----------------------ATT---
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--------------------------------AATAACATTCTGCGTCCATTTCACAGTATTAACTGCTGCTCGAAAAT-
--AAAAATTGAG--AAGTTACATGATCTATCAGCAGAGCAGAAAGGTCTTCTCAAATCCACCCTCC-----TTTTTTCTG
GAAAGTGCCAATAAGAACTCAGACGACTGCACTAGCACGTCCT
>chr5A_446
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------------------------------------------------TACAAAATAAAGGACTCTGATACAATGGAGGC
CAATGTAATTAGCAAGTTTAGAAGCTAAACAAATGATAATGACTCAATGGAATGGACACATTACATGCCCCAAAACTAAT
ACCATTGAAAACCCTTGATTGAGCAACAAACGAGGATCCAAATAAAAGCTTGAAAGCTTAGCAGGCCAGCACTTGCAACG
CAAGCAAAAGGGACCCATGAGCAGCAGCGCGGCAA----------------------------------AGCGGCGACGC
CGACGCCAGGGCCCCACGCGGCAGCGTCCGCGGCGCCACGACACGTCATCCTTGGCTAGCCCCACTACTGGTCCAAGGTC
CATC---CGCCGCGCGCACACGCGGTAGCCGCACTGCGGTTCTATTTTT---TT-CCACTTCTAGTTATTAGTCGCCAGT
TGATGGTGCCTCGGCTAAGCTTTTAGCCAGCGGCCCCTTTGTCTTCTTCTCCCTCCTCCCCCTTTATAAAGGAAGGTGGC
AATGGCGTCTCACCATGTAGCTAAAGCTAAAGCGCCATTTGCTAGCTAGGG----------TGTGCCACCAAAACAGAGC
TGAGAAG-AGTAAAG-AAAAGTTCGCCGCTCTTTGCTACGGGCCTGGTTAGTTGACTCGACGTCGCTTGGTGGTTTTTCC
TTGCGAGTGAAGTGATCTTTGTGTGT-----GCGAACGAAGCTCGTGGCAATGGGGAGGCAGCCGTGCTGCGACAAGGTG
GGGCTGAAGAAAGGCCCGTGGACGGCGGAGGAGGACCAGAAGCTCGTCAGCTTCCTCCTCGGCAACGGCCAATGCTGCTG
GAGAGCCGTCCCCAAGCTCGCCGGTGGGTCACTCACTGCCTGCACATGCGCCCGGCTAGCTACTTCGCCGGCCGGCTAGC
CGGCCGGTTAGCTTGACTAATTACATGCATGCATGC------CACGACCCACAGCTCACGACCTTTCTTTGATTGACCAA
TGTTTTGACGTGTTGCGACTTGCGTTTGTGTGGACAGGGTTGCTCCGGTGCGGGAAGAGCTGCCGGCTGCGGTGGACCAA
CTACCTCCGGCCGGACCTCAAGCGCGGGCTGCTCTCCGACGAGGAGGAGAAGACGGTGATCGACCTGCACGAGCAGCTCG
GCAACCGGTGGTCCAAGATCGCCTCCCACCTGCCCGGCCGGACCGACAACGAGATCAAGAACCACTGGAACACGCACATC
AAGAAGAAGCTGAGGAAGATGGGCATCGACCCCGCCACCCACAAGCCCCTCCAGCCTGCTGCTGCTG---CCCATCAGCA
GCCGCAGCGGCCTACCGGCGGCGACTCGCCCGAGCAGAAGGTGCCGGCGGCGGCGGCCACAGGAAGCCAGTCAGGCGCCG
AAGAGGACATGTTCTGCCCCGACGAGGTGCCGACCATGATGCAACTTCTGGACAACATCATCCTGCCATGCGACGTCGTC
GAAGCGGCGCCGCTCGACAGCAGCTGCGGCACGGCTTCGTCACCAGCCGAGTCGTCCTCGTCCTCCTCGTCGTCGTCGGC
CTCGGCGGCGTCGA---GAGGCGGTGGCGGTGGTTTCGAGGACGACTGGCTGCCGCAGATCATGGAGTGGCCGGTGGAGC
CGATGTTCATGATGGGGCTGGACGTCGACGTGGTCACCGGGCCGACGTCGGCATGGGAGTTCGAGGACGCCTTCAACGCG
TACCAGAGGATCGCCCTGTTCGATCACCAGGAGACATGGGCTTGAACGAAGCGGCTCGTCGTCGTCGATCCCAATATCTT
ATTCTTTATCATAACGAATGAGTAGTTGCCATGCCGTATGCGATTGCGTGCTTATATGTTAATTACTGCCCAGCAAAAGT
TCATCGGCGGTGCACCTAGTTGGTCATACTAGAACAATTAGAGGGAGAGGTAGCAAGAAAATAAGTGAAGACATGCATAA
CCACCCCGAATTCTTTTTTTTTTTCATTTTGTCGTTCATTTTCGTCA-TTCGACCCTTCGGCAAGTCTAGATTTGATTCC
TCAGCTCTTCGGAAGGACATATGCATGGGTGCG-----------------------GAGATGAAAGGAATCTGGATAATG
AAATGAAGGAAAATGGTGATG-TTTTTATACATATACCCCGAAATGAAATGCAGTAT------ATGGAGTAGAAGATTGG
GTTA-------TACACACCGTTTTCTGTTATGGTTCATAGTGTGTTTACTCCGCCTAGTTACACGTAGAGCATTTCTATT
CCCTTTTTCGGGTTTGACATAGAGCATTTCTAAGATAATGAAAGCCATCATAACC---TTATCGCCCACACGAAGGTCGC
AACATCTTGAGCATGGCTGGTTCGACTGGGTAACAAAATGCTAGTACTGAAATGAAAATGAAATGAAAATGAAAATT---
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--------------------------------AATAACATTCTGCGTCCATTTCACAGTATTAACTACTGCTCAAAAAC-
--AAACTGAAATGAAAATTACATGATCTATCAGCAGAACAGAAAGGTCTTCTCAAATTCACCCTCCCTTTTTTTTTTCTG
GAAAGTGCCAATAAGAACTAAGACGACTGCACTAGCACGTCCT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------S-------------S---
-----S---------------S--S-S-----SSS-SS------------------------------------------
------------S-------------------------------------------------------------------
S--S------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S-S--------------------S------------------S-----S------S---S---------------
------------------------------------------------------S-------SS----------------
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-------------------------------S-------------------------S----------------------
-----------------------S--------------------------------------------------S-----
S---------------------------S--SS-----------------------------------------------
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---------------------------------------------S----------------------------------
----------------------------------S-SSSSSS-------------S------------------------
---------------S-----------S----------------------------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S-------S-------
S-----------------------S-------------------------------------------------------
----------------------------------------------------S--------------------------S
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--------------SSS---------------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------S-------------------------------S----------------S----------
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-----------------------S--------------------------------------------------------
-----------------SS--------------------S-------------S-S------------------------
----------S----------------------------S-----------------------S----------------
----------------------------------------------------------------------S---------
----SSSSSSS---------------------------------------------------------------------
-----------S--------------------------------S-------------------S--------------S
---------------------------------------SS-------SS--SSS--SSS-SS--SSSS---SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-------------------------------------S------S
SS---S----SS-------------------S------S--S-------S----------------S-------------
-------------------------------------------
>forward_298
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--------------------------------------TGCATTTTTGAGCCAACCCG----------------------
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>reverse_2213
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----------------------------------------------------AGCTCGTCGTCGTTGATACC--------
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>forward_303
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-------------------------------------------TTTTGAGCCAACCCGATGGA-----------------
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>reverse_2344
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-----------------------CCATACTAGAACAATTAGAGGGAGAGG------------------------------
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-------------------------------------------
