>input_sequence_56830
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-------------------------------ATGAGCTGCTTCTCATGCTTCAAGCCACCGCAGGCGGACGGCGAGGAGG
AGGAGGAGGAGGACAAGGCACCGGCGGTGGCGCCCCTGCCGTCGG---------TCAAGCGGCTCGGCTCCCGGCGAAGA
AGCCTGCGCTCCTCCTCCTCCAGCAAGTCCGGCGGCAGCTTCGCGGCAAGCCGGCAGCCGAGCACGCGGCCCAGCAACAT
CACCAGCTGCAGCGCGCGCTCCTTCACCTACGAGCAGCTCGCGGCGGCCACGGGCGACTTCCGCGCCGACTGCCTGCTGG
GCGAGGGCGGCTTCGGCCGCGTCTACCGGGGGCGCCTGGACGGCGGCCAGCTGGTGGCGGTGAAGCAGCTGGACCTGGAG
GGCCTGCAGGGCGACCGCGAGTTCGTGGTGGAGGTGCTCATGCTCAGCCTCCTCCACCACCACAACCTCGTCAGCCTCGT
CGGCTACTGCTCCCACGGCCACCAGCGGCTGCTCGTCTACGAGTACATGGCCCTCGGCTCCCTCGCCGACCACCTCCTCC
TCCTCGACGACCGCCTCGCC---------ACCGCCACTCCCAGGGCGACGGC----------------------------
--------------GAGGGCGGCGCTGAGCTGGGAGACGCGGATGCGGGTGGCGCTGGGCGCCGCGAGGGGGCTCGAGTA
CCTCCACGAGACGGCCAACCCGG---------CCGTCATCTACCGCGACCTCAAGTCCTCCAACGTCCTCCTCGACGACG
CCTTCTGCCCCAAGCTCTCCGACTTCGGCCTCGCCCGCCTCTGCAGCACCTCCTCCTCCGCCGCCGGCCCCGGCCCCGCC
GAGCGCTCCCCGCGCGTCATGGGCACCTACGGCTACTGCGCGCCCGAGTACATCCGCACCGGCCGCCTCAGCGTCAAGTC
CGACGTCTACAGCTTCGGCGTCCTCCTGCTCGAGCTCATCACGGGCCGCAGGGCTGTGGACTCGGCCAGGCCGGCGCCGG
AGCAGGTGCTCGTCACATGGGCCGCGCCCATGTTCAAGGACAGCAAGCGCTACCGGGAGCTGGCCGACCCGCTGCTCCGG
GGCGACTTCCCCGAGCGCGACCTCAACCAGGCCGTGGCCGTGGCCGCCATGTGCCTGCAGGACCAGGCGTCCGCGAGGCC
GTGCATGAGCGACGCCGCCGTCACGCTCTCCTTCCTCGCCGAGGCCGCCGCCGCCAGCGCCGCGCAGCCGCTACCGTTGC
CCCCGCCCCAGCTGCAGGCCGATGAAACCTTGCGACAAGAAGAAGAAGCCTAG---------------------------
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>chr3A_1_TraesCS3A01G537900
ATCATACGTATTGTGGTTTTTGTTGATTCACACGCATAATATATTATGTCCTAAACTGATTTCAGTTTATGAAGTTGAGA
GATTCCAAAATAGGCATCTTGTTGCAATGATATCATATGGTAAAAACCGGGAAGCTTTATCCAATATTTT------TACA
TTGTTGCTGTTTAAGCCTGGCAC----------ATCATTCATGTAGTCCTTTTTTCTTTTCGCCGC--GTGGAGATTCAG
CTAGTGATGCATTGAAATTGTTTACCAGGTGATGAAGTGTAATTGATCGGAAAA----ATAATAATGCACTGACGTGTGT
TTGTGTTTTTCAAC---ATTGGTGCAGACATAACAGGAAGTGAGCAAGGAAGGCTTGATAGGTTTTGTGGCAGTCTGCTG
CAGCATATTGTACATTTGACCACCAGACTATGTAAAAATATATATGTGCTTTGCCGAA--ATG-GAAGGCAAACAAATAG
AGATGTGGAGGTTTGTGTATCATTAAATTGTAATTAGGGGTTGGCTTGTGTGTTGCTAATATTGAGTG----AGATGCCC
TAGTATACTTTCTACTCTTTCCGGAAATTAAA----TTATTTTTTCATGTTTACTATTATTACA-----------TTCTT
TTTTCATGTTTCTTGTGTATGCTTGTTACTCTTTTCCGGAATTTTGTTCATGATTATT---ATTATTAC--------ATT
CCATGAACAACAAATGCAGGCCAGGTGAT-AACCTGGAAAATGTAGCATCATATCATTTATTCTTTTTATGCATCACACT
GTAAGCA-------------------------------------------------------------------------
------------------------------------------------CGTGTGAAAAATAAATGTACTTGC-TGCATTG
TTGGTGTGCATCTATCTATCTATCTCT--------GGCCGGCCGGCCGTCCGTCCTAATTATAGTTAGTGAGCCTAACAA
CCACCGGAACACATCCATCCATCCATAATTAAGCAA-GCAAGCAAAACTAGA----------------------------
-------------CTAAATCTGGTTTCTTCCCTTGTTTCCTCGCCGGCCGGGTAACAGACAGCAAACGCCGTACGTACTC
GGATCGATCGATCGATGCACGGCCGCCGGAGATGAGCTGCTTCTCATGCTTCAAGCCACCGCAGGCGGACGGCGAGGAGG
AGGAGGAGGAGGACAAGGCACCGGCGGTGGCGCCCCTGCCGTCGG---------TCAAGCGGCTCGGCTCCCGGCGAAGA
AGCCTGCGCTCCTCCTCCTCCAGCAAGTCCGGCGGCAGCTTCGCGGCAAGCCGGCAGCCGAGCACGCGGCCCAGCAACAT
CACCAGCTGCAGCGCGCGCTCCTTCACCTACGAGCAGCTCGCGGCGGCCACGGGCGACTTCCGCGCCGACTGCCTGCTGG
GCGAGGGCGGCTTCGGCCGCGTCTACCGGGGGCGCCTGGACGGCGGCCAGCTGGTGGCGGTGAAGCAGCTGGACCTGGAG
GGCCTGCAGGGCGACCGCGAGTTCGTGGTGGAGGTGCTCATGCTCAGCCTCCTCCACCACCACAACCTCGTCAGCCTCGT
CGGCTACTGCTCCCACGGCCACCAGCGGCTGCTCGTCTACGAGTACATGGCCCTCGGCTCCCTCGCCGACCACCTCCTCC
TCCTCGACGACCGCCTCGCC---------ACCGCCACTCCCAGGGCGACGGC----------------------------
--------------GAGGGCGGCGCTGAGCTGGGAGACGCGGATGCGGGTGGCGCTGGGCGCCGCGAGGGGGCTCGAGTA
CCTCCACGAGACGGCCAACCCGG---------CCGTCATCTACCGCGACCTCAAGTCCTCCAACGTCCTCCTCGACGACG
CCTTCTGCCCCAAGCTCTCCGACTTCGGCCTCGCCCGCCTCTGCAGCACCTCCTCCTCCGCCGCCGGCCCCGGCCCCGCC
GAGCGCTCCCCGCGCGTCATGGGCACCTACGGCTACTGCGCGCCCGAGTACATCCGCACCGGCCGCCTCAGCGTCAAGTC
CGACGTCTACAGCTTCGGCGTCCTCCTGCTCGAGCTCATCACGGGCCGCAGGGCTGTGGACTCGGCCAGGCCGGCGCCGG
AGCAGGTGCTCGTCACATGGGCCGCGCCCATGTTCAAGGACAGCAAGCGCTACCGGGAGCTGGCCGACCCGCTGCTCCGG
GGCGACTTCCCCGAGCGCGACCTCAACCAGGCCGTGGCCGTGGCCGCCATGTGCCTGCAGGACCAGGCGTCCGCGAGGCC
GTGCATGAGCGACGCCGCCGTCACGCTCTCCTTCCTCGCCGAGGCCGCCGCCGCCAGCGCCGCGCAGCCGCTACCGTTGC
CCCCGCCCCAGCTGCAGGCCGATGAAACCTTGCGACAAGAAGAAGAAGCCTAGATGAGATAGCTTAATTAGCTTGAGCTT
AATTAATTCATTATTAGGATGGATGGAGTCGACCGTACCGCACGTGTTGATTGGTTTTGGCGCCATTGGTT---------
-TTGATGGATCAACTAGATGATACTTGTATGAGTACCTGATGATGAGTTGCATTGGAAAGAGCTAGAGACAAACTTTGCA
CATCGATAGTAATCTTTTTTTCAGTGCCACCTGTCATATTAACTTTGATCAGACCGG-----------------------
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-------------------------------------------------------AATCGAGACATGACGCATTCGCGCT
ACGGCTAATAGTCGACAGCGGGCCGACGTCTCAAGGTGGAGGAGGAGGGGGAAA-------GATGAGGAGATGTGCGATG
GCATGAGGGAAAGGGAAGGAAAGGGAAGGGACATCCGCAACATTGAAAGAGAGGGCACAAAGGTTGGTGGAGATTCTCTC
TTTTTCCCTACCCATACCGAGTTGCCCTCGCGTGCAGCCGGGAGGGATCCCTGAGTAATGCTACATCCACGTAAAGAATT
TTACGTGTTTTACGTAACCTGCCACATGGACAATTGTGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTAGGTAGAA
CGTTTCGTAAAGCTACGTAGGTGTAGGATTATCGGGGATCCCTTGCCATCACCGTCATCCCCCCCCCTTCTGCCACTCCA
CCCCTCCTCACCCATGATGACCCACAAG
>chr3D_9
--------TATTGTGGTTTC-GTTGATTCACATGCATTATTTCCTCTGTCCTAAACTGATTTCGGTTTATCAAGCTGGGA
GATTCCAAAATAGGCATCTTATTTCAGTG-------ATGGTGAAAACTGGGAAGATTTATCCAATATTTGTAGTAGTATA
TCTTTGTCGTTTAAGCTTGGCACAGTGAGTAGCATCATTCATGTAGTCCTTGTTTCTTTTCGTCGC--ATGGATATTCAG
CTAGTGATGCATTCAAATTGTTTACCAGGTGATGAAGTGCAATTGATCGGAAAAGAAAAAAAAAATCGACTGACGTGTTT
GTG---TTTTCAAC---ATTGGTGCAGACATAACAGGAAGTGAGCAAGGAAGGCTTGATAGGTTTTGTGGCAGT---CTG
CAGCATATTGTACATTTGACCACCAGACTTA-TATAAATATATATGTGCCGTGCCGAAATGGAAGAAGGCAAACAAATAG
AGATGTGGAGGTTTGTGTATCATTAAATTGTAATTAGGGGTTGGCTTGTGTGTTGCTAAT------TG----AGATGCCC
TAGTATACTTGGTACTCTTTCCGGAAATGAAATCCCTTATTTTTTCATGTTT----------------------------
-------------------------------------GGAATTTTTTTCATGATTATT---ATTATTATTACATTCAATT
CCATGAAGGACAAATGCAGGTC-------------------------------------ATTCTTTTTATGCAACACACT
ATAAGCATGCGGTGAGTATATACA------------TAATTCTGTTTGAATTTTTTGTTTGCGGCGGAAATTATGTCAGG
TTGTGGATACCAAGTTACCAACTATTGCTTCATTCGCTCACCTGCACAAGTGTGAAAAATAAATCTACTTAGATACATTG
TTGGTGTCTATCTATCT--------------------CCGGCCGTCCGGCCGTCCTAATTTTAGTTAGT-----------
-CACCGGAATCCATCCATCCATCCATAATTAAGCAAAGCAGGCAAGCAAAAGTAGGCTGCCTAGATGGTGATCCATCCTA
TCCTATAGCTTAGCTAAATCTGGTTTCTTTCCTTCTTCCCTCGCCGCCCGGGTAACAGCAA-------------------
--ATCGATCGATCGATGCACGGCGGCCGGAGATGAGCTGCTTCTCATGCTTCAAGCCACCGCAGGCGGACG---AGGAGG
AGGAGGAGGTGGACAAGGCACCGGCGG---------------------GCTCCATCAAGCGGCTCGGCTCCCGGCGAAGA
AGCCTGCGC------------AGCAAGTCCGGCGGCAGCTTCGCGGCCAGCCGGCAGCCGAGCACGCGGCCCAGCAACAT
CACCAGCTGCAGCGCGCGCGCCTTCACCTACGACCAGCTCGCCGCCGCCACGGGCGACTTCCGCGCCGACTGCCTGCTGG
GCGAGGGCGGCTTCGGCCGCGTCTACCGGGGGCGCCTGGACGACGGCCAGCTGGTGGCGGTGAAGCAGCTGGACCTGGAG
GGCCTGCAGGGCGACCGCGAGTTCGTGGTGGAGGTGCTCATGCTCAGCCTCCTCCACCACGACAACCTCGTCAGCCTCGT
CGGCTACTGCTCCCACGGCCACCAGCGCTTGCTCGTCTACGAGTACATGGCCCTCGGCTCCCTCGCCGACCACCTCCTCC
TCCTCGACGACCGCCTCGCC---------ACC------CCGAGGGCGACGGC----------------------------
--------------CAGGGCGGCGCTCAGCTGGGAGACGCGGATGCGGGTGGCGCTGGGCGCCGCGAGGGGGCTCGAGTA
CCTCCACGAGACGGCCAACCCGG---------CCGTCATCTACCGCGACCTCAAGTCCTCCAACGTCCTCCTCGACGACG
CCTTCTGCCCCAAGCTCTCCGACTTCGGCCTCGCCCGCCTCTGCAGCACCTCCTCCTCCGCCGCCGGCCCCGGCCCCGCC
GAGCGCTCCCCGCGCGTCATGGGCACCTACGGCTACTGCGCGCCCGAGTACATCCGCACCGGCCGCCTCAGCGTCAAGTC
CGACGTCTACAGCTTCGGCGTGCTCCTCCTCGAGCTCATCACGGGCCGCCGGGCGGTGGACTCGGCGCGCCCGGCGCCGG
AGCAGGTGCTCGTCACATGGGCCGCGCCCATGTTCAAGGACAGCAAGCGCTACCGCGAGCTGGCCGACCCGCTGCTCCGC
GGCGACTTCCCCGAGCGCGACCTCAACCAGGCCGTCGCCGTGGCCGCCATGTGCCTGCAGGACCAGGCGTCCGCCAGGCC
GTGCATGAGCGACGCCGCCGTCACGCTCTCCTTCCTCGCCGAGGCCGCCGCCGCCAGCGCCGCGCAGCCGCTACCGTTGC
CCCCGCCCCAGCCCCAGGCAGATGAAACCTTACG---AGAAGAAGAAGCCTAGATGAGATAGCTTAATTAGCTTGAGCTT
AATTAATTCATTATTAGGATCCATGGAGTCGACCGTACCGCACGTGTTGATTGGTTTTGGCGCCATTGGTTGTAGCTAGT
TCTGATGGATCAAGTAGATGCTTATGTAACCTGGTGAGTTTCTTCATTGGAAGG-----GAGCTAGAGACAAAGTTTGCA
CATTAGTAGTGATTATTTTTTCATTGCCACTTGTCATAGTAACTTTGATCAGACCGAAGAAAATAGTGCGAATGACCGAA
CACGCGAACAATCGTCACGACCAGCAGATGAGGGGGCAAGAGAGAGTGAATTGCAAAAAACATCGACACTTTAGGTAAGG
TTTGCAGGAACCACAAGTCTATGAAATTGTGCCAAAAACCATTATTTTTTTGTCTAATTTTTTGCAAAAAACACTGGTTG
CTCGTTTGGACCCATTTAAAGACGATTATGACATGCAGAGCCCACTTTTGCTGACGTGGCGTAACGGTTCGCACGCAACG
CCGTTAGACATACGATTTTACACCAACACCCTTTTAAAAAAATTAAAAAGCAATCGGGTCCTTGGCCCTGAAAACAAAAG
CAATCGGGACCTTCATCTCCCACCGGTCCGGTGGGATTGCTTGATACGTCTCCGTCGTATCTATAATTTTTGACTGTTCC
ATGCCTATATTATACAACTTTCATATACTTTTTGGCAACTTTTTATATTATTTTTGGGACTAACATATTGATCCAGTGCC
CAGTGCCAGTTCCTGTTTGTTGCATGTTTTATGTTTCGCAGAAACCCCATATCAAACGGAATCCAAACGGGATAAAAATG
GACGGAGAATATTTTTGGAATATTTGGAGAATTCCGGAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
AATTGGAGTTACGGATCTCCATATATACACGAAACGGTGAAAGGGCAGGACAGGAGAACGCAGAAACAGAGAGAGACAGA
GAGACAGATCCAATCTCGGAGGGGCTCTCGCCCCTCCCAAGCCATAGAGACCATGGACCAGAGGGGAAACCCTTCTCCCA
TCTAGGGAGAAGGTCAAGGAAGAAGAAGAAGGAGGGGGGCTCTCTCCCCCTCGCTTCCGGTGGCGCCGGAACGCCGCCAG
GAGTCATCATCATCACCGCGATCTACACCAACACCTCCGCCATCTTCACCAAAATCTCCATCACCTTCCCCCATCTATCT
ACAGCGGTCCACTCTCTCGCAACCCGCTGTACCCTCTACTTGAACATGGTGCTTTATGCTTCATATTATTATCCAATGAT
GTGTTGCCATCCTATGATGTCTGAGTAGATTTTCGTTGTCCTATCGGTGGTTGATGAATTTCTATGATTGATTTAATTTG
CTTGTGGTTATGTTGCTGTCCTTTGGTGCCCATCATATGAGCGCGCGCGGATCACACCATAGGGTTAGTTTGTATGTTGA
TAGGACTATGTATTGGAGGGCAAGAGTGACAGAAGCTTCAACCTAGCATAGAAATTGATGCATACGGGATTGAAGGGGGA
CCAATATATTTTAATGCTATGGTTGGGTTTTACCTTAATGAACGTTAGTAGTTGCGGATGCTTGCTAATAGTTCCAATCA
TAAGTGCATAGAATTCCAAGTCAGGGATGACATGCTAGCAGTGGCCTCTCCCACATAAAACTTGCTATCGGTCTAGTATA
GTCAATTGCTTAGGGACAATTCGCAACTCCTACCACCACTTTTCCACACTCGCTATACTAACTTTATTGTGTATTTATCT
AAACAGCCCCTAGCCTTTATTTACGTGCTCTTTACTATCTTGCAAACCTATCCAAAAACACCTACAAAGTACTTCTAGTT
TCATACTTGTTCTAGGTGAAGCAAACGTTAAGCGTGTGTAGAGTTGTATCGGTGGTCGATAGAACTTGAGGGAATATTTG
TTCCACCTTTAGCTCCTCGTTGGGTTTGACACTCTTACTTATCGAAAGAGGCTACAATTGATCCCCTATACTTGTGGGTT
ATCATTGCTCCGGTGTGCGGCCGACGCTGTGTCTGCCGCCGCCTGCTCGCGCCCGTGCTGCGCCGTTCGCGTTCGCGTCC
GCCGCTGCCGCTGCTTGCTCCAGTGCGCTCGCGTCCGTCCCGGCAGGCCCCACCGCCGTTGAGCCGGATCTGCCACATCT
GGCCGCCGCGTGGCCTCCACTGCTCCAGGACGTGCCCGCCTGGGAGGCCTGCAAGGCGCGGCTCCAGGTCTGACATCCTC
TCCCTCCCATTGCTCTGGTCCTTGCCTCGCCCAGTTGCTCTGGCCGCGGCCGCCCGATGCTCTGGCCGTTGCCTTGTCCC
GCAGCTCTTCCGCAACGAAGAAGGCAGGGTGGAGCGGTGCCAACTGTGGAAGATGAGGTGGTCGACGGCTCGGGCTGCTT
GCCACCAGCGCGTGCGGGGGCGCCCGGCGCCCGGCCCCACCCCTGCCGCCCCTCCTGCTCCCAGTCGCCATGGCAGTACC
CGCCGTCACACGCCATGTCCATGGGAAGCCCTCGCCGTTGCGCGCCATGTCCATCGGGAACCCAGCCGCCCCCTCCCGCT
CCAAGCCACGCCGGAGCAAGCAGCAGCTTCGCCGGTTGCGCACGAGAGTTAGTGGTCGCCAGCGTCCACCACGGGACCGG
TGGGAGATGAACTCATGGAGGACCCGATTGCTTTTATTATTTTTTACTAAGGGGGTCTTTGTAAAATTATAGGGTCTATT
TTGTAAATCTAGAAAAACCCTCATCGAACGGTGTCTAACTTGAACCGTAACGCCACGTCATCATTTGCGGGACCCATCTG
TCATAATCATGCTCAAAGCGGTCTAAACCGTCAACTAGTGTTTTTTGCAAAAAATTAGACAAAAAATTAGTGGTTTTTGG
CACAATTTCGTAGACTTGTGGTTCTTGCAAACCTTGCCTGAAGTGACGATGTTTTTTGCAACTCACTCGGCAAGAGACGC
AAGCACAAGGGGAAGGGACAAAGAGGGGTTGACCGGCGATGCGAGTTTGATTGTCAATCAAGACATGGCGCATTCGCACT
AAGACTAATAGTCAGCAGCGGGCCGACGGCTCAAGGTTGAGGAGGGGGACAGAGAGACCGGGAGGACGAGATGTGCGATG
GCATGAGGGAAAGGAAAGGAGAGGGAAGGGACATCCGCAACATTGAAAGAGAGGGCACAAAGTTTGGTGGAGATTCT---
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>chr3B_174
GCAGCA--------------------------------------------------------------------------
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----------------------------------TCATTCATGTATTCCTTTTTTTGTTTTGGTCTGAATGGAGATTCAG
CTAGTGATGCATTCATATTGTTTACCAGATGA--AAGTGTGATTGATCG--AAAAAATAAATAAATCCACTGACGTGTTT
GTG---TTTTCAACATTATTGGTGCAGAGATAACAGGAAGTGAGCAAGGAAGGCTTGATAGGTTTTGTGGCAGT---CTG
CAGCATATTGTACATTTGACCACCAGACTAT-TATAAATATATATGTGCCGTGCCGAAATATG-GAAGGCAAACAAATAG
AGATGTGGGGGTTTGTGTATCGTTAAATTGTAATTAGGGGTTGGCTTGTGTGTTGCTAAT------TGAGTGAGATGCCC
TAGTATACTTGGTACTCTTTCCGGAAATTAAA----TTATTTTTTCATGTTTATTATTATTATTATTACATTCTTTTCTT
TTTTCATGTTTCTTGTGTATACTTGTTGCTCTTTCCTGAATTTTTTCCCATGATTATTGTTATTACTAC--------ATT
CCATGAAGAAGAAATGCAGGTCAGGTGATGAACCTGGAAAATATAGCATCATATCATTTCTTCTTTTTATGCAACACACT
ATGAGCGTGCGGTGAGTATATATATAATCATGTGCTTAATTCTGTTTGAATTTTTTGTTTGCGGCGGAAATTATGTCAGA
TTGTGGATACATTGTTACATTGAGTATATAATTTTGGTG-------CACGTGTGAAAAATGTAC-TACTTGC-TACATTG
TTGGTGTGCATCTATCTATCTATCAATCTCTGGCCGGCCGTCCGTCCGTCCGTCCTAATTATAGTTAGTGAGCCTAACAA
CCACCGGAACCCATCCATCCATCCATAATTAAGCAA-GCAAGCAAGCAAAAGTAGGCTGGCT----GGTGATCCATCCTA
TCCTATAGCTTAGCTAAATCTGGTTTCTTTCCTTCTTCCCTCGCCGGCCGGGTAACAGCAA-------------------
--ATCGACCGATCGATGCGCGGCCGCCGGAGATGAGCTGCTTCTCATGCTTCAAGCCACAGCAGGCGGACGGCGAC---G
ACGAGGGGGAGGACAAGGCTCCGGCGGTCGGGCCACTCCCGTCCTCGGGCTCCATCAAGCGGCTCGGCTCCCGGCGAAGA
AGCCTGCGCTCCTCCTCCTCCACCAAGTCCGGCGGCAGCTTCGCGGCCAGCCGGCAGCCCAGCACGCGGCCCAGCAACAT
CACCAGCTGCAGCGCGCGCGCCTTCACCTACGACCAGCTCGCCGACGCCACCGGCAACTTCCGCGCCGACTGCCTGCTCG
GCGAGGGCGGCTTCGGCCGCGTCTACCGGGGGCGCCTGGACGACGGCCAGCTGGTGGCGGTGAAGCAGCTGGACCTGGAG
GGCCTGCAGGGCGACCGCGAGTTCGTGGTGGAGGTGCTCATGCTCAGCCTCCTCCACCACCACAACCTCGTCAGCCTCGT
CGGCTACTGCTCCCACGGCCACCAGCGGCTGCTCGTCTACGAGTACATGGCGCTCGGCTCCCTCGCCGACCACCTCCTCC
TCCTCGACGACCGCTTCGCCGGCGAGGGTACC------CCGAGGGCGAGGGCGTCG------------------------
---------------CCGGCCGCGCTGAGCTGGGAGACGCGGATGCGGGTGGCGCTGGGCGCCGCGAGGGGGCTCGAGTA
CCTCCACGAGACGGCCAACCCGG---------CCGTCATCTACCGCGACCTCAAGTCCTCCAACGTCCTCCTCGACGACG
CCTTCTGCCCCAAGCTCTCCGACTTCGGCCTCGCCCGCCTCTGCAGCACCTCCTCCTCCGGCGCCGGCCCCGG------C
GAGCGCTCCCCGCGCGTCATGGGCACCTACGGCTACTGTGCGCCCGAGTACATCCGCACCGGCCGCCTCAGCGTCAAGTC
CGACGTCTACAGCTTCGGCGTGCTCCTGCTCGAGCTCATCACGGGCCGCCGGGCCGTCGACTCGGCGCGCCCGGCGCCGG
AGCAGGTGCTCGTCACATGGGCCGCGCCCATGTTCAAGGACAGCAAGCGCTACCGCGAGCTGGCCGACCCGCTGCTCCGC
GGCGACTTCCCCGAGCGCGACCTCAACCAGGCCGTCGCCGTGGCCGCCATGTGCCTGCAGGACCAGGCGTCCGCCAGGCC
GTGCATGAGCGACGCCGCCGTCACGCTCTCCTTCCTCGCCGAGGCCGCCGCCGCCAGCGCCGCGCAGCCGCTACCGTTGC
CCCCGCCCCAGCTGCAGGCCGATGAAAACTTGCG---AGAAGAAGAAGCCTAGATGAGATAGC----TTAGCTTGAGCTT
AATTAATTCATTATTAGGATGGATGGAGTCGACCGTACCTAATGTGTTGATTGATTTTGGCGCCATTGGTTGTAG----T
TTTGATGGATCAAGTAGATGATACTTG-----------GATGATGAGTTGCATTGGAAAGAGCTAGAGACAAACTTTGCA
CATCGATAGTAATCTTTTTTTCATTGCCAC--------------------------------------------------
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>chr4D_1275
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--------------------------------------------------------------------------TGCTGG
GCGAGGGCGGGTTCGGGCCCGTGTACCGCGGGCGGCTGAGGGACGGCACGGAGGTGGCGGTGAAGCAGCTGGACCGCAAC
GGGCTGCAGGGCACGCGCGAGTTCCTGGTGGAGGTGCTCATGCTCAGCCTCCTCAAGCACCCCCACCTCGTCACCCTCAT
CGGCTACTGCGCCGACGCCAGCCACCGCATGCTCGTCTACGAGTTCATGCCCCAAGGCTCCCTCGAGGACCACCTCCTGG
ACCTGCC------------------------------------------GCCCTCC------------------------
---------------TCCCCGGGCCTCGACTGGGCCATGCGCATGCGCATCGCGCAGGGCGCCGCCCGGGGCCTCGAGTA
CCTCCACGACGCCTCCCGCCGCCCCGGCCCGCCCGTCATCTACCGCGACTTCAAGGCCTCCAACATCCTCCTCGACGGCT
GCTTCCGCGCGCACCTCTCCGACTTTGGCCTCGCCAAGGTCGGCC---------CCGTCGGCGACAAGACCCA------T
GTG---TCCACCAGGGTCATGGGCACCTACGGCTACTGCGCCCCCGAGTACGCGCTCACCGGGAAGCTCACCACCATGTC
CGACGTCTATAGCTTCGGCGTCGTCTTCCTCGAGATCATCACGGGGCGGCGCGTCATCGACACGTCCAGGCCCCGTGATG
AGCACAACCTTGTGCAGTGGGCGGCGCCGCGCTTCAAGAGCAAGAAGCGCTTCAGGGAGATGGCCGACCCGCTCCTCCGC
GGCGCATACCCCACCAAGGGGCTCTACCAGGCGCTCGCCATCTCCGCCATGTGCCTCCAGGA------------------
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>chr6D_1330
GCC-----------------------------------------------------------------------------
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----------------------------------------------------GGTGGCCGTGAAGCAGCTGTGCCGCGGC
GGCGCGCAGGGGAGCCGCGAGTTCGTGGTGGAGTGCGCGATGCTGATGACGCTGCGGCACCCCAACCTGGTGTCCCTCGT
CGGCTACTGCGCGCAGGCCCAGGAGCGGCTGCTCGTCTACGAGCTCCTCCCCCGCGGCAGCCTCGACGCCCACCTCTTCC
TCCCTCT------------------------------------------CCCCGCCAATGGCGACCTCTCCGCCCAAGCC
CAAGGCAATGGTGACCGGCCGGCGCTGGAGTGGAACACGCGCGTGAGGATCGCGCACGGCGCGGCCAGGGCGCTGCGGTA
CCTGCACGAGGCGGTGTCGCCGCCG---------GTGATCTACCGCGACCTGAAGCCGTCCAACATCCTCCTGGCCGACG
ACTTCACCGCCAAGCTGTCCGACCTGGGGCTGGCCCGGATCGGGC---------CCTCCGGCGACGACACCCA------C
GTG---TCCACGCGCGTGATGGGCACCTTGGGCTACTGCGCGCCCGACTACGCGCTCACCGGCCGCCTCACCGTCAAGTC
CGACGTCTACAGCTTCGGCGTGGTGCTCCTGGAGCTCATCACCGGCCGCAGGGCCTTCGACGC--CGAGGCCGGCGACGA
GAG-----------------------------------------------------------------------------
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>SNPs
SS-SS-SS-----------SS-----------S----S--S-SS-S-----------------S------S---S--S--
--------------------S--S--S--SSSSSSS-----S-----S------S--------------S--------S-
-SS---SS--------S---------------------------------------------S-----S-----------
-------------S---------------------------------------------S--S---S-----------S-
S--SSS--------------------------------------------------------------------SSS---
-------------------------------S--S--------------SS-----------------------------
------------------------------------------------------------SSSSSS--------------
----------SS-----------------------------------------S--------SS----------------
--------------------S------S------S-S--------S----------------------------------
-------S------------S---------------------S------------------------------S------
S-------------------------------------------------------------------------------
----------------------------------------------------------------S---------S-----
------------------------SS------------------S-----------------------------------
----------S----------------------------------SSSS-SS----------------------------
-----------------------------S----S--S--------------------SS-SSSSSSSSSSSSSSSSSSS
SS------------------------------------------------------------------------------
----------------------------S-S---S--S-----SS-----------------------------------
-----------------------------------------------S--------------------------------
-------------------S-------------S--------S--S----------------------------------
------------------------------------------S-------------------------------------
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--------------------------------SSSSSS--S---------------------------------------
--------------S-----------------------------------------------------------------
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------------------------------------------------------S-------------------------
-------------------------------------------------------------------------------S
-----------------------------------S--------------------------------------S-----
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----------------------------------SSS-------------------------------------------
--------------------------------------------------------------------------------
-------------S-------------S-SSS-SSSSS------------------------------------------
-----------------------S------S-------S-----------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------S-------S---------S--
-S-S---------SS-------------S--------S-------S--SSSS-S---------S--S-------------
--------------S-----S-----------------------------------------S--------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1191
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------GTAACAGACAGCAAACGCCG---------
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>reverse_5958
--------------------------------------------------------------------------------
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-------------------------------------GGAGGAGGAGGGGGAAAGAT-----------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------
