>input_sequence_56809
--------------------------------------------------------------------------------
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----------------------------------------AATACCTAACAAATCTTTCCGCAAAAAAAAAAAACAAATC
AACCTGGATGGCCCCAACAGACACGAGTTAATCTCCATCTCAAACCTCACCACGTACGTGCACCTGCTCCCGATCGTAAC
CGCGTATGATGGCTGGCGCGGCCGAGGACTTCGCCGTGCGCGCCCGCGGCATGGAGGGATTAGGCGACGATGGGGACGTG
GCCCTTGGCTACCCGCTGATCGACGACGTCGAGCGCGGGCAGAGGAAGCCGGCGGCCGTCGTCGGTTACCCGCTGCCGCC
GGAGGGAACGGATCCACGACCGTCGTCGGCGACGAGAAGACCACCACCCCGTGACAAGTGCACCTCCTGCAAGATGTTCA
CCAAGGTACGTACGGCAGAACCAGGTCGAGATCGTACTTTAATAAGTACACCTACTTCAACCGATCTTCAATTCACGTTC
AATTATGCTCTGGGTCCAGCGGAAGGTCAAATTGGCCATGGTTGCACTCCACTCACACCCGTCTCTC--TGTC------A
TTGCAGGGTTTTCTGGTTACCCTGGGGACCGTGTTGATCACCGATTTTGTCCTGGGCGGCTTGATTCTCAAGAAAGCACC
GCATCCCCTCTTGGTGTTGTTATGCTCGCCCTTTTATCCTTTTGTCTGTGCTGGGCTTATCATGCTGATTGCCAACTGTG
AAACGTCAGAATCACACGTTCAGGACGGCTAGACAAAACAGAAATAGCTTGGCTAGGTTAAGTTGATGGGAGCCGCTAAA
CCTGTTCTTCATTCTCTAGCTAGATATTCCAGGGGTGTTCTTTCTTGTTGGACTTTATAGAATTGTACTTTCTATAAACA
AGTGCAAGACATTTTAATGACCTAAAACGTCTTATATTTGTGTACAGAGAGAGTATTTCTTTCAAATTTTTCTGTATGTG
GTTTGTTTGAATACAGTGTAACGATAATATTTTTCTATGGTTCGGCTAAAACTCAATCAACTGAGATTTAGCAAAGTCTC
AATCATCCCGGTCGTCTTCGGATACTTGTGCTTCAAGATTCATGTGTTTTTGTCTTTTGTGCAAGCTGGGACGTTTTTTT
AAAGGGTTACCAAACACTTTATTGATCTACGTGAATAGAAAGAGGGATATGCACTGGATCGTGCGGGTTAATGAGCCACA
GGTGGCGACCCGAATCAAGCGAGAGTGTGTTTGGCAAGATTGTGAGCATCAACATTCGAGATGCTCTGCCCTCAAAAATA
AA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>chr3D_1_TraesCS3D01G394600
GGCATATTCAGCGCAGGCCCACAGAAGCATCAATGCATAGCGGACGGCTAAAGTGTGCTGTAAAAAAATGTTTGCTTATT
CAAAAAATGTTTGAAATTTTGAAAAGAAATATTCACGAAATCAAAAAATGTTCATGATTTTCAAAAAGTTAATGTATTAA
AAAATTGTTAATGAATGGAAAAATATCCTAAAAATTCAAAAATTATTCGTAACTTACAAAATAGTTTATTCATTCATAAA
ATATTCGTTGATTAAAATTAATCATCATTTAAAAAAATTGTTAAATAAAAAAATGTTTGTGAATTTAAAAAATTGTTCCA
CAAATTTCCAAACAAAGTTCATTGACTATAGAAATGTTCGCCGATTCAAAACAATTGTTTAAAGATTATTCACATCTTTT
TTAAAAAAAGTTTGCAAATAGTACAAAATGTTCATGAGTTAAAAAATGTTTACAATTTCAAATATGTTCACGAGTTTTAT
AAAATATTCATGATTTCACGAAGAGAGTGATAGTGTATCTCGGTGATGCAGCAAAATGCAGTCATAACCATTAAAAATTA
TATAATTTTTTTGTTGCAATTTCTAGTGTCATCAATACAAATAAGGTCTGGAGTGGTAGTATGCCGAACATGACGGCCAT
TAGCTATAGATGTGCCGCCTTGGCAAGACCATGAGCTTCAAAGTTTGTCTCCCTCCCTTCATGCACTGTCTTCGCTTCAG
GATATTGACTCCACCTTTCTTGGATCTCTCGAATGATCAGTGACGATGCTCCTCTGTACTTCCCCTTGAGATGACTAATA
GTGGCAGAACAATCAGTAGCTACGTGCATGCTTGGAAGATTGAGATCAGCAGCTAAATAAAATCCTTGGCAGCAAGCTAG
AGTAGGGTGATTTTATTTCGGAGCACGACTGATTGATGCGCGTGATCCGGCGCCCCATCTGAGCATTTTCCAAACCAACA
AATGGGGATGGTTTAAATGGCGCTCCTCGGTACCGGTCCAAATACCTAACAAATCTTTCCGCAAAAAAAAAAAACAAATC
AACCTGGATGGCCCCAACAGACACGAGTTAATCTCCATCTCAAACCTCACCACGTACGTGCACCTGCTCCCGATCGTAAC
CGCGTATGATGGCTGGCGCGGCCGAGGACTTCGCCGTGCGCGCCCGCGGCATGGAGGGATTAGGCGACGATGGGGACGTG
GCCCTTGGCTACCCGCTGATCGACGACGTCGAGCGCGGGCAGAGGAAGCCGGCGGCCGTCGTCGGTTACCCGCTGCCGCC
GGAGGGAACGGATCCACGACCGTCGTCGGCGACGAGAAGACCACCACCCCGTGACAAGTGCACCTCCTGCAAGATGTTCA
CCAAGGTACGTACGGCAGAACCAGGTCGAGATCGTACTTTAATAAGTACACCTACTTCAACCGATCTTCAATTCACGTTC
AATTATGCTCTGGGTCCAGCGGAAGGTCAAATTGGCCATGGTTGCACTCCACTCACACCCGTCTCTC--TGTC------A
TTGCAGGGTTTTCTGGTTACCCTGGGGACCGTGTTGATCACCGATTTTGTCCTGGGCGGCTTGATTCTCAAGAAAGCACC
GCATCCCCTCTTGGTGTTGTTATGCTCGCCCTTTTATCCTTTTGTCTGTGCTGGGCTTATCATGCTGATTGCCAACTGTG
AAACGTCAGAATCACACGTTCAGGACGGCTAGACAAAACAGAAATAGCTTGGCTAGGTTAAGTTGATGGGAGCCGCTAAA
CCTGTTCTTCATTCTCTAGCTAGATATTCCAGGGGTGTTCTTTCTTGTTGGACTTTATAGAATTGTACTTTCTATAAACA
AGTGCAAGACATTTTAATGACCTAAAACGTCTTATATTTGTGTACAGAGAGAGTATTTCTTTCAAATTTTTCTGTATGTG
GTTTGTTTGAATACAGTGTAACGATAATATTTTTCTATGGTTCGGCTAAAACTCAATCAACTGAGATTTAGCAAAGTCTC
AATCATCCCGGTCGTCTTCGGATACTTGTGCTTCAAGATTCATGTGTTTTTGTCTTTTGTGCAAGCTGGGACGTTTTTTT
AAAGGGTTACCAAACACTTTATTGATCTACGTGAATAGAAAGAGGGATATGCACTGGATCGTGCGGGTTAATGAGCCACA
GGTGGCGACCCGAATCAAGCGAGAGTGTGTTTGGCAAGATTGTGAGCATCAACATTCGAGATGCTCTGCCCTCAAAAATA
AAATTACATCTATGAAAATTGGTTCTACGAAGAAAAATTCTTTGACTACTGACAGGTGAGCACATCCTTGGCCTTCCTTA
ATGTCTTCAATCACTGGTTTGTAATCGCATGCGACTTCGAAGTTTTGAAGGGAGAGATCCTCTGCTAGCGCTGACGCCTC
ACGGCAGGCTATGGCCTCCAAAATTGCCAAAAGTAGTCCACACGCCCACCTCTCACCGTCTAGTCGCTGACAGCATGCTC
AACACCACGCTGGCGTGCCTAGTTAGCGCCGATTTCGTATCCGAGCCAAGTTGTTGCACCAATTTGATGTATCCCACGAG
TTTTAGCACTAAAGTGACTTTTCTCGTCAAGTTTAAGCATCGGTGATGTAATTGACTCTTATTTTTTTTATGTGGGAGTT
GTTTGTTGTGCAAGCTGGGGACGGTCACTAGTAGAAACAGAGGCTTCCATACG-CCCCATTAGTCCCTAAAATAATCGAA
CTGCGACCAAAGGGGTCTTTAGTCGCGGTTCGGGAGGAGACCCGCGACCAACTATCTGGGCCCAGCGCGCTCGGTCGACA
GCTGGCGGACGGGAGGGGCTTTAGTCCCGGTTGGCCTGGCCAACCGGGACTAAAGGTCCTCAGGCTGGCCCGAAGGCCTT
TAGTTGCGGTTGGCTAGGCCAACCGGGACTAAAGGCCCATCCCTATATATAGGACTCAGCTCACTTCACTTAGCCACAAT
TCAGAA-GGGGGGTGGTGGGTTTGCTTTTGGTTCCTCCTATGCACACAAGGTGTTCGATGAAATGCCCGAGAGCATGAAA
CAAACATGATATGAAGTGTCCGAGCCACACTTGAGCTTTCTCATTTATTTTTCCTCCGCGATCGCGGTTAGCAACTTGAA
CCTTTCATGTGTCATTGATAAAATATGCATGTGTGTACTTCATTGTTTAATTTGTATTATTTCTAGCTAGTTAGTTTAAC
AAATGCATGATGGTTAATTATATACTTTATATAATAATAATGCA
>chr3D_1158
GCGCGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------CCCGCGGCGTGGAGGAATTAGGCGACGATGGGGACGTG
GCCCTCGGCTACCCGCTGATCGACGACGTGGAGCGTGGGCAGAGGAAACCGGCGGCCGTCGTCGGTTACCCGCTGCCGCC
GGAGGGAACGGATCCACGGCCGTCGTCGGCGGC---AAGGCCACCACCCCGTGACAAGTGCGCCTCCTGCAACATGTTCA
CCAAGGTACGTACGGCAGAAGCAGATCGAGGTCGTACGTACG-------------------------TCAATAGATCTTC
TATTATGCTCTGGATCCAGCGGAAGGTCAAAGTGGCCATGGTTGCACTCCACTCACACCTGTCTCTC--TCTCTCTGTGA
TTACAGGGTTTTCTGGTTACCCTGGGGACCGTGTTGATCACCGATTTTGTCCTGGGCGGCTTGATTCTCAAGAGAGCACC
GCATCCCCTCTTGGTGTTGCTATGTTCGCCCTTTTATCCTATTGTCTGTGCTGGGTTTATCCTGCTGATTGCCAACTGTG
AAACGTCAGAATCAGACATTCAGGACGGCTAGACAAAACAAAAATAGCCAGGCTAGGTTAAGTTGATGGGAGCTGCTAAA
CCTGTTCTTCATTCTCTAGCTAGATATTCCAGGGGTGTTCTTTCTTGTTGGACTTTATAGAATTGTACTTTCTATAAACA
AGTGCAAGACATTTTAATGACCTAAAACGTCTTATATTTGTGTAAAGAGAGAGTATTTCTTTCAAAAAAAATTGTATGTG
GTTTGTTTGAATACAGTGTAACGATAATA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------
>chr3A_1162
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------GCCCGCGGCATGGAGGGATTAGGCGACGATGGGGACGTG
GCCCTCGGCCACCCGCTGATCGACGACCTCGAGCGTGGGCAGAGGAA------------------------GCTGCCGCC
GGAGAGAAGGGATCCACGACCGTCGCCGGCGGCCACAAGACCACCACCCCGTGACAAGTGCGCCTCCTGCAAGATGTTCA
CCAAGGTGCGTACGGCAGAAGCAGATCGAGATCGTACTT---TAAGTACTCCTACTTCAACCGATCTTCAATTCACGTTC
AATTATGCTCTGGGTCCAGT----GGTCAAATTGGCCATGGTTGCACTCCTCTCACACGGTCACACCCGTCTCTTTGTCA
TTGCAGGGTTTTCTGGTTACCCTGGGGACCGTGTTGATCACCGAGTTTGTCCTGGGCGGCTTGATTCCCAAGAGAGCACC
GCATCCCCTCTTGGTGTTGTTATGTTCGCCCTTTTATCCTATTGTCTGTGCTGGGCTTATCATGCTGATTGCCAACTGTG
AAACGTCAGAATCAGACATTCAGGACGACTAGGTAAAACAGAAATAGCTAGGCTAGGGTAAGTTGATGGGAGCTGCTAAA
CCTCTTCTTCATTCTCTAGCTAGATATTT-AGGGGCGTTCTTTCTTGTTGTACTTTATAGAATTGTACTTTCTATAAACA
ATTGTAATACGATT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>chr5D_2636
--------------------------------------------------------------------------------
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---TGTGGTGCAAGTGGCGAGGGTACACTAGTAGAAAAAGAGGCTTCCATACGCCCCCATTAGTCCCTAAAATAATCGAA
CCGCGACCAAAGGGGTCTTTAGTCGCGGTTCGGGAGGAGACCCGCGACCAACTATCTGGGCCCAACGCGCTCGGTCGACA
GCTGGCGGACGGGAGGGGCTTTAGTCCCGGTTGGCCTGGCCAACCGGGACTAAAGGTCCTCAGGCTGGCCCGAAGGCCTT
TAGTTGCGGTTGGCCAGGCCAACCGGGACTAAAGGCCCATCCCTATATATAGGACTCAGCTCACTTCACTTAGCCACAAT
TCAGAA-GGGGGGTGGTGGGTTTGCTTTTGGTTCCTCCTATGCACACAAGGTGTTCGATGAAATGCCCGAGAGCATGAAA
CAAACATGATATGAAGTGTCCGAGCCACACTTGAGCTTTCTCATTTATTTTTCCTCCGCGATCGCGGTTAGCAACTTGAA
CCTTTCATGTGTCATTGATAAAATATGCATGTGTGTAGTTCATTGTTTAATTTGTATTATTTCTAGCTAGTTAGTTTAAC
AAATGCATGATGGTTAATTATATACTTTATATAATAATAATGCA
>chr2D_2640
GTTCAAGCTC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------GGGGACGTACACTAGTAGAAACAGAGGCTTCCATACGCCCCCATTAGTCCCTAAAATAATCGAA
CCGCGACCAAAGGGGTCTTTAGTCGCGGTTCGGGAGGAGACCCGCGACCAACTATCTGGGCCCAGCGCGCTCGGTCGACA
GCTGGCGGACGGGAGGGGCTTTAGTCCCGGTTGGCCTGGCCAACCGGGACTAAAGGTCCTCAGGCTGGCCCGAAGGCCTT
TAGTTGCGGTTGGTCAGGCCAACCGGGACTAAAGGCCCATCCCTATATATAGGACTCAGCTCACTTCACTTAGCCACAAT
TCAGAA-GGGGGGTGGTGGGTTTGCTTTTGGTTCCTCCTATGCACACAAGGTGTTCGATGAAATGCCCGAGAGCATGAAA
CAAACATGATATGAAGTGTCCGAGCCACACTTGAGCTTTCTCATTTATTTTTCCTCCGCGATCGCGGTTAGCAACTTGAA
CCTTTCATGTGTCATTGATAAAATATGCATGTGTGTAGTTCATTGTTTAATTTGTATTATTTCTAGCTAGTTAGTTTAAC
AAATGCATGATGGTTAATTATATACTTTATATAATAATAATGCA
>chr5D_2652
GACGTG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TCACTAGTAGAAAAAGAGGCTTCCATACGCCCCCATTAGTCCCTAAAATAATCGAA
CCGCGACAAAAGGGGTCTTTAGTCGCGGTTCGGGAGGAGACCCGCGACCAACTATCTGGGCCCAGCGCGCTCGGTCGACA
GCTGGCGGACGGGAGGGGCTTTAGTCCCGGTTGGCCTGGCCAACCGGGACTAAAGGTCCTCAGGCTGGCCCGAAGGCCTT
TAGTCGCGGTTGGCCAGGCCAACCGGGACTAAAGGCCCATCCCTATATATAGGACTCAGCTCACTTCACTTAGCCACAAT
TCAGAA-GGGGGGTGGTGGGTTTGCTTTTGGTTCCTCCTATGCACACAAGGTGTTCGATGAAATGCCCGAGAGCATGAAA
CAAACATGATATGAAGTGTCCGAGCCACACTTGAGCTTTCTCATTTATTTTTCCTCCGCGATCGCGGTTAGCAACTTGAA
CCTTTCATGTGTCATTGATAAAATATGCATGTGTGTAGTTCATTGTTTAATTTGTATTATTTCTATCTAGTTAGTTTAAC
AAATGCATGATGGTTAATTATATACTTTATATAATAATAATGCA
>chr7D_2655
--------------------------------------------------------------------------------
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----------------------GGTCACTAGTAGAGAAAGAGGCTTCCATACGCCCCCATTAGTCCCTAAAATAATCGAA
CCGCGACCAAAGGGGTCTTTAGTCGCGGTTCGGGAGGAGACCCGCGACCAACTATCTGGGCCCAGCGCGCTCGGTCGACA
GCTGGCGGACGGGAGGGGCTTTAGTCCCGGTTGGCCTGGCCAACCGGGACTAAAGGTCCTCAGGCTGGCCCGAAGGCCTT
TAGTTGCGGTTGGCCAGGCCAACCGGGACTAAAGGCCCATCCCTATATATAGGACTCAGCTCACTTCACTTAGCCACAAT
TCAGAA-GGGGGGTGGTGGGTTTGCTTTTGGTTCCTCCTATGCACACAAGGTGTTCGATGAAATGCCCGAGAGCATGAAA
CAAACATGATATGAAGTGTCCGAGCCACACTTGAGCTTTCTCATTTATTTTTCCTTCGCGATCGCGGTTAGCAACTTGAA
CCTTTCATGTGTCATTGATAAAATATGCATGTGTGTAGTTCATTGTTTAATTTGTATTATTTCTAGCTAGTTAGTTTAAC
AAATGCATGATGGTTAATTATATACTTTATATAATAATAATGCA
>chrUn_2656
--------------------------------------------------------------------------------
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-----------------------GTCACTAGTAGAAACAGAGGCTTCCATACGCTCCCATTAGTCCCTAAAATAATCGAA
CCGCGACCAAAGGGGTCTTTAGTCGCGGTTCGGGAGGAGACCCGCGACCAACTATCTGGGCCCAGCGCGCTCGGTCGACA
GCTGGCGGACGGGAGGGGCTTTAGTCCCGGTTGGCCTGGCCAACCGGGACTAAAGGTCCTCAGGCTGGCTCGAAGGCCTT
TAGTTGCGGTTGGCCAGGCCAACCGGGACTAAAGGCCCATCCCTATATATAGGACTCAGCTCACTTCACTTAGCCACAAT
TCAGAA-GGGGGGTGGTGGGTTTGCTTTTGGTTCCTCCTATGCACACAAGGTGTTCGATGAAATGCCCGAGAGCATGAAA
CAAACATGATATGAAGTGTCCGAGCCACACTTGAGCTTTCTCATTTATTTTTCCTCCGCGATCGCGGTTAGCAACTTGAA
CCTTTCATGTGTCATTGATAAAATATGCATGTGTGTAGTTCATTGTTTAATTTGTATTATTTCTAGCTAGTTAGTTTAAC
AAATGCATGATGGTTAATTATATACTTTATATAATAATAATGCA
>chr7D_2657
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------TCACTAGTAGAAACAGAGGCTTCCATACGCCCCCATTAGTCCCTAAAATAATCGAA
CCGCGACCAAAGGGGTCTTTAGTCGCGGTTCGGGAGGAGACCCGCGACCAACTATCTGGGCCCAGCGCGCTCGGTCGACA
GCTGGCGGACGGGAGGGGCTTTAGTCCCGGTTGGCCTGGCCAACCGGGACTAAAGGTCCTCAGGCTGGCCCGAAGGCCTT
TAGTTGCGGTTGGCCAGGCCAACCGGGACTAAAGGCCCATCCCTATATATAGGACTCAGCTCACTTCACTTAGCCACAAT
TCAGAA-GGGGGGTGGTGGGTTTGCTTTTGGTTCCTCCTATGCACACAAGGTGTTCGATGAAATGCCCGAGAGCATGAAA
CAAACATGATATGAAGTGTCCGAGCCACACTTGAGCTTTCTCATTTATTTTTCCTCCGCGATCGCGGTTAGCAACTTGAA
CCTTTCATGTGTCATTGATAAAATATGCATGTGTGTAGTTCATTGTTTAATTTGTATTATTTCTAGCTAGTTAGTTTAAC
AAATGCATGATGGTTAATTATATACTTTATATAATAATAATGCA
>chr1D_2657
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------TCACTAGTAGAAACAGAGGCTTCCATACGCCCCCATTAGTCCCTAAAATAATCGAA
CCGCGACCAAAGGGGTCTTTAGTCGCGGTTCGGGAGGAGACCCGCGACCAACTATCTGGGCCCAGCGCGCTCGGTCGACA
GCTGGCGGACGGGAGGGGCTTTAGTCCCGGTTGGCCTGGCCAACCGGGACTAAAGGTCCTCAGGCTGGCCCGAAGGCCTT
TAGTTGCGGTTGGCCAGGCCAACCGGGACTAAAGGCCCATCCCTATATATAGGACTCAGCTCACTTCACTTAGCCACAAT
TCAGAA-GGGGG-TGGTGGGTTTGCTTTTGGTTCCTCCTATGCACACAAGGTGTTCGATGAAATGCCCGAGAGCATGAAA
CAAACATGATATGAAGTGTCCGAGCCACACTTGAGCTTTCTCATTTATTTTTCCTCCGCGATCGCGGTTAGCAACTTGAA
CCTTTCATGTGTCATTGGTAAAATATGCATGTGTGTAGTTCATTGTTTAATTTGTATTATTTCTAGCTAGTTAGTTTAAC
AAATGCATGATGGTTAATTATATACTTTATATAATAATAATGCA
>chr2D_2658
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------CACTAGTAGAAACAGAGGCTTCCATACGCCCCCATTAGTCCCTAAAATAATCGAA
CCGCGACCAAAGGGGTCTTTAGTCGCGGTTCGGGGGGAGACCCGCGACCAACTATCTGGGCCCAGCGCGCTCGGTCGACA
GCTGGCGGACGGGAGGGGCTTTAGTCCCGGTTGGCCTGGCCAACCGGGACTAAAGGTCCTCAGGCTGGCCCGAAGGCCTT
TAGTTGCGGTTGGCCAGGCCAACCGGGACTAAAGGCCCATCCCTATATATAGGACTCAGCTCACTTCACTTAGCCACAAT
TCAGAAGGGGGG-TGGTGGGTTTGCTTTTGGTTCCTCCTATGCACACAAGGTGTTCGATGAAATGCCCGAGAGCATGAAA
CAAACATGATATGAAGTGTCCGAGCCACACTTGAGCTTTCTCATTTATTTTTCCTCCGCGATCGCGGTTAGCAACTTGAA
CCTTTCATGTGTCATTGATAAAATATGCATGTGTGTAGTTCATTGTTTAATTTGTATTATTTCTAGCTAGTTAGTTTAAC
AAATGCATGATGGTTAATTATATACTTTATATAATAATAATGCA
>chr5D_2658
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------CACTAGTAGAAATAGAGGCTTCCATACGCCCCCATTAGTCCCTAAAATAATCGAA
CCGCGACCAAAGGGGTCTTTAGTCGCGGTTCGGGAGGAGACCCGCGACCAACTATCTGGGCCCAGCGCGCTCGGTCGACA
GCTGGCGGACGGGAGGGGCTTTAGTCCCGGTTGGCCTGGCCAACCGGGACTAAAGGTCCTCAGGCTGGCCCGAAGGCCTT
TAGTTGCGGTTGGCCAGGCCAACCGGGACTAAAGGCCCATCCCTATATATAGGACTCAGCTCACTTCACTTAGCCACAAT
TCAGAAGGGGGG-TGGTGGGTTTGCTTTTGGTTCCTCCTATGCACACAAGGTGTTCGATGAAATGCCCGAGAGCATGAAA
CAAACATGATATGAAGTGTCCGAGCCACACTTGAGCTTTCTCATTTATTTTTCCTCCGCGATCGCGGTTAGCAACTTGAA
CCTTTCATGTGTCATTGATAAAATATGCATGTGTGTAGTTCATTGTTTAATTTGTATTATTTCTAGCTAGTTAGTTTAAC
AAATGCATGATGGTTAATTATATACTTTATATAATAATAATGCA
>SNPs
-S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
-----S-----------------------------S-----------S--------------------------------
-------------------------------S-S-S-------------------------S------------------
--------------------S---S--------------SSS-------S------------------------------
-----------------------------------------------------------S----------S---------
-------------------------------------------------------------------------S------
------------------------S---------------S---------------------------------------
--------------S--S-------------------------------S-----------------------S------
--------------------------------------------------------------------------------
--------------------------------------------S---------------------SSSSSS--------
-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS---S-------SS----------------------------------------------------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------
>forward_883
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CCTTGGCAGCAAGCTAG
AGT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>reverse_2144
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------------CGGGTTAATGAGCCACA
GGT-----------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>forward_1070
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------GCCCCAACAGACACGAGTTA--------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>reverse_2292
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ACAGGTGAGCACATCCTTGG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
