>input_sequence_56807
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--------------------------------------------------------CTATATATATCAGATAGCCAGCCA
ACCTCATCATATTCATACCCCACCGACGATCGATCCAAGCCTCATACGATCCGAATTGTCTCTCGGCGTCGGCGTCGGCG
TCGCCGACTTAATTCCACCGAGAGATCGAGACCATGTGCTTCGTCGACGGCCAAACAACCAGAGCCGGGTGCAAGCGGCC
GCTCATGCTGGCTGTGCGCGAGCACGAGCACCACCGTGCCGCTGC---AGAACGGGCCAAGCGGACTAACATGTCAGCGG
TTGCCGGCGCCCTAGTCATGTACGTGGCGCCGGCGCCGCCCGGCCAGGACGAACCCGTAAATGCTGTCCCGCTGGCCGCC
GCCTCTCCGAGAAGGAGCAGGGAGGCGCCGGACTGGATACCCAAGGTCCTTCTCCCGCAACTGAGACTGTGCGCTGACTT
AACCGTGACCTTCATCGACGAGAAGGCCGTGACGAAGAGCGACCTTGACCCTCAGCAGAACCGGTTACGCCTCCGGACCG
ACGGCGTGCGCCGGCTACTCCCACTCCTCACTGACGACGAGGCCGCGGCCGCCAACCTACTATACGACCAACCACGCGTT
CGAAGGGCAAGTCCGATGACACCGCCAGAGGACGACGACGCGGTGCAGGGGAGGAAGGGAATGAAGAGGCTGGGGAGGAA
GCACGGCGGGCTGCCCATGCACGTGGTGGCCAGCAGCAACCTGAGCATCGAGATCAAGCAGCTGGAGCTGTCGAGGTGGG
ACGGCAGCCAGGGCACGGTCATCAAGGGAGCAGGGTACCACGACTTCATCGGCAAGTGCGGCTTCAGGGAGGATGACCTC
GTCGAGATATGGGCATTCAAGCAGAGGGAGTTCCGGAACTTTGGGGTGAATATGTGCGATGAGAGCCCGCTCTATATCGT
GCTAGTCAACAAACAAACACGGCGAGCGGCGGCGGCCCGTGGTGTCGCCGTTGCCGGCCCCGCCGCGTGATTCACCATGC
CGGCGCCGTAATGCAGGACGCTGGTCCGCACAGTAACACGCTGTCATGCAAAACCTTTTTTTTTTCTTTTCTGATCAGGA
CTTTCCAGAACCCTT----------------------------TTTTTTCCCGATCAGTATCGAGCCGAAAAGAGCTGTC
AATAACTGGGGTAAATGTAATACGCTCAGTTCCACCTTTTAGACCTTGTGGACGAGAGTGGGTTTTTTCTATTACCATGC
ACGCTATAAATGTACCCTAAAAAATGCACTGTATAAGTGTA---------------------------------------
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>chr3D_1_TraesCS3D01G270000
AAGATCTTACGATGGCCATCACAATCCGCCTCGAAGCTGCCACCGCATGGGAATGTGGTCATCGCAAGACCTATCACTGA
CGAA-GGCGAGGCGGTCACGACGCTCCCGGATCTGAGCATAGACTAGCACGGTGCCCCAGCCAGCCCTCGGCCTCATAGG
GGCAGCGACACGCCCCCTATCGCACAACCATGGTCAGATTTGGGAACGAACCAGCCCGCCCCGGTGTCCACCGGCCAGCC
ATGACCGGAAGGAAAGGGCAGCTTGTGGCGGTCGACAACGGGCGGCCCAGGTTGGGGTGGCTGCAACCTTCCTGGGCACA
TTCCTGAAACCTCAGGTTGGAGGGCCTCAAGCAGGCGGTGGAGATTGGAGCCCAACCAGCAGTGATTAGCACAGCCACCA
GAGGATACGCACGACTGCCTCGGGGGAAGAAAGGGACGCAACCAAGGGAGAGAATCCCCGCCGCCACCGCCTTCCGCACG
GGGCTTCGCCCGGTGGTGCTTGCCGGTAGCGGCGAGGAAAGAGAG--GGCGAGAAGCGGGCAGGAGGCGGCGAAGATGGG
AACGCCTCCCAAGGTTTTTTTTTAACAGACCCTAAATTTATCTTTTTTC--TAAGAGCTACCCAGATACTCAAATGCTCT
GAAATTTGGCACGGACATCACACACTCAGTCATCTTTCTCCATAAAAAAA-TTCAG-ATTTTTTGAATTTATTTTGTTGT
TTTAATGATTATCCTTTTTGTTC----ACTCCCGGGTTCATCTGAGTCTGGGAGT-----CGCCTCATTCCCTCTCCGTA
ACCTATTGGATGTTGACCCCTTGGGCACGGCAACAACTGAACGTATACGAGCCAGGCTGGGTTCCCATCCATCAAACAAT
CAGTTCGGACGGGACAAGGAATGCGAATGGAGTTCGGCTTCATTCGGCATCCAGGTCGCCATCGATCCGTGGCGGACACG
ACAGCGTTCCTCTGTACTTGCGAGTTCAATTATGTTTCCCGGAGCATTCCGCTACGCTATATATATCAGATAGCCAGCCA
ACCTCATCATATTCATACCCCACCGACGATCGATCCAAGCCTCATACGATCCGAATTGTCTCTCGGCGTCGGCGTCGGCG
TCGCCGACTTAATTCCACCGAGAGATCGAGACCATGTGCTTCGTCGACGGCCAAACAACCAGAGCCGGGTGCAAGCGGCC
GCTCATGCTGGCTGTGCGCGAGCACGAGCACCACCGTGCCGCTGC---AGAACGGGCCAAGCGGACTAACATGTCAGCGG
TTGCCGGCGCCCTAGTCATGTACGTGGCGCCGGCGCCGCCCGGCCAGGACGAACCCGTAAATGCTGTCCCGCTGGCCGCC
GCCTCTCCGAGAAGGAGCAGGGAGGCGCCGGACTGGATACCCAAGGTCCTTCTCCCGCAACTGAGACTGTGCGCTGACTT
AACCGTGACCTTCATCGACGAGAAGGCCGTGACGAAGAGCGACCTTGACCCTCAGCAGAACCGGTTACGCCTCCGGACCG
ACGGCGTGCGCCGGCTACTCCCACTCCTCACTGACGACGAGGCCGCGGCCGCCAACCTACTATACGACCAACCACGCGTT
CGAAGGGCAAGTCCGATGACACCGCCAGAGGACGACGACGCGGTGCAGGGGAGGAAGGGAATGAAGAGGCTGGGGAGGAA
GCACGGCGGGCTGCCCATGCACGTGGTGGCCAGCAGCAACCTGAGCATCGAGATCAAGCAGCTGGAGCTGTCGAGGTGGG
ACGGCAGCCAGGGCACGGTCATCAAGGGAGCAGGGTACCACGACTTCATCGGCAAGTGCGGCTTCAGGGAGGATGACCTC
GTCGAGATATGGGCATTCAAGCAGAGGGAGTTCCGGAACTTTGGGGTGAATATGTGCGATGAGAGCCCGCTCTATATCGT
GCTAGTCAACAAACAAACACGGCGAGCGGCGGCGGCCCGTGGTGTCGCCGTTGCCGGCCCCGCCGCGTGATTCACCATGC
CGGCGCCGTAATGCAGGACGCTGGTCCGCACAGTAACACGCTGTCATGCAAAACCTTTTTTTTTTCTTTTCTGATCAGGA
CTTTCCAGAACCCTT----------------------------TTTTTTCCCGATCAGTATCGAGCCGAAAAGAGCTGTC
AATAACTGGGGTAAATGTAATACGCTCAGTTCCACCTTTTAGACCTTGTGGACGAGAGTGGGTTTTTTCTATTACCATGC
ACGCTATAAATGTACCCTAAAAAATGCACTGTATAAGTGTAATAAATCACCATACGAGTCATCGCTTGGAGATCTGTGTC
ATGCTTTTTAATGTTTGGGTGACGCTACGACGCGTCCGCCGGCGGATGAAAGAAAACATCAGCCCCCTCCGAGGCCATCC
GATTGACGCAAAATAGCCGTCAGATCCCCCAAAGGTGTGCGCCGTGAATTGCAACAGGCTGGTTGGTACGATATTCACTC
TGCAACAAAGGCTTCATTGCAAAACCATCCAAAAGCGTTTTTGCGTGAAGTGTTATTTTTGCAAAGTCATGTTGTAGAAT
TTTTTTTTGCTACAGGGGTTGTGTTACATAATTATTTTTTTCGTCTTTCACCTTTTTGCAACATACATGATGTTGCGGAA
TGATTTTTGCAACAAGGATGATGTTGCCAAAAAAATTTCAATGAAAAATATGATCAAAGTTATATACACGCTGGCTACTT
GTTGGGGGCTGGACTACAATAGAATCTGAGCATCCAGTGCAAAAATAGAAAAACCATC-CTGGACCACTGGATTGAAGAT
GAATGGTACAGATTTAGGTGGAGGGATCTGA-ACCACTTCATGTACGTTTCACAGAAAACCCCTTGTCAATAGTTACATA
TGAAA-CAACACATTTGCAGTATAGACCTCGAAACTTCATGAAATACGAGCATTTT-CAGCTATACACGGCGTTGATGCC
CATCTCCTCTTAGT-TTGATATAAAA-TATTTATAAATATTTACTTCATGAAATTCATACACATTTAAGTGTCTATTTTG
TCCTTTGAGACATCACTAATTTTTCAAGAGAATTGGATAGCTTGGTTACTAA----AAAGCGTCTATATGTATCACAAAT
ATTTCAGCACAAGGGAGAAC--------TAAGCCATCCCAGAT------------------ACATATACATGTCAAAAT-
GGAAGTATCCGAGTGCATGAGCAACTTAAGGACCGAAA-T-----------A--------------GTATTTGAGTACAT
GAGAACGTAACAC--AAGAGACATATACATAGATCATTTTTAGTACATGGCCGGCAGGACCAAGTG
>chr3D_1
AAGATCTTCAGATGGCCATCGCAATTCGCCTCGAAGCCGCCGCCGCATGCGAATGTGGTCACAGCAAGACCTATCACCGA
TGAA-GGCGAGGTGGTCACGACGCTCCCAGATCTGAACATAGACTAGCATGGTGCCCCAGCCAGCCCTCGACCTCATAGG
GGTAGCGACACGCCCCCATCCGCACAACCACAGTCAGATCTGGGAACGAACCATCCCGCCCCGGCGTCCACTGGCCAGCC
ATGACCGGAAGGAAAGGGCAACTTGCGGCGGTCGACAACGAGCGACCTAGGATAGGGTGGTTGCAGCCTTGCTGGCCACA
CTCCTGAAACTTCAGGCTGGAGGGCCTCAAGCAGGCGGCGGAGATTGGAGCCCAACCGACAGCGATTAGCACAGCCACCG
GAGGAGACGTACGACTTCCTCGGGTGAAGAAAAGGACACATCCAAGGGAGAGAAGCCCTGCCGCCACTGCCTTCCGCACG
GGGCTTCGCCCGACTGTGGCGAGG---------------AGAGAGAGGGCGAGAAGCTTGCTGGAGGCGGCGAAGATGGG
GATGCCTCCCAT-GTTTTTTTTTCACAGACCCCAAATTTATCTTTTTTC--TAAGAGCTACTCATATATTCAAATGCTCT
GAAATTTGGCACGGACATCACACACTCAGTCATCTTTCTCCACAAAAAACC--CAG-TTTTTTTGAATTTATGTAGTTGT
TTTGAGGATTTTC---TTTTTTT----ACTCCCGGGTTCATCTGAGCCGGGGAGCCAAAACGCCTCATCTCCTCTCCGTA
A-------------------------------------------------------------------------------
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>chr3A_1
AAGATCTTAAGATGGCCATCACAATTCGCCTCGAAGCAGCCGCCGCATGCGAATGTGGTCACCGTAAGACCTATCACCGA
CGAA-GGCAAGGTGGTCACGATGCTCCCGGATCTAAGCATAGACTAGCACGGTGCCCCAGCCAGCCCTCGACCTCATAGG
GGCAGCGACACGCCCCCTTCCGCACAACCACGGTCAGATCTGGAAACGAACCAGCCCGCCCCAGTGTCCACTAGCCAGCC
ATGACCGGAAGGAAAGGGCAACTTGTGGCGATCGACAACGAGCGACGTAGGATGGGGTGGCCACAACCTTCCTAGCCACA
CTCCTAAAACTTCAGGCTGGAGGGCCTCAAGCAGGCGGCGGAGATTGGAGCCCAACCAACAAAAATTAGCACAACCACCG
GA----------------------------------CGCATCCAAGGGAGAGAAGTCCTGCTGCCACCGCCTTCCGCATG
GGGCTTCGCCCGGCAGCGGCGTGG---------------AGAGAGAGGGCGAGAAGCTTGCTGGAGGCGGCGAAGATGCG
GACGCCTCCCAAGTTTTTTTTTTCACAGACCCCAAATCTATCTTTTTTC--TAAGAGCTACTCATATATTCAAATGCTCT
GAAATTTGGCACGGACATCACACACCCAGTCATCTTTCTCCACACAAAAAATTCAG-ATCTTTTGAATTTATGTAGTTGT
TTTAAGGATTTAC---TTTTTTTA---ACTCCCGGGTTCATTTGACTCGGGGAGCCAACACGCCTCATCCCCTCTCCCTA
A-------------------------------------------------------------------------------
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>chr3B_1
AAGATCTTACGATGGTCGTTTCAATCTGCCTCGAAGCCGCCGCTGCATGCGAATGTGGTCATCACAAGACCTATCACTGA
CGAAAGGCGAGGCCGTCACGACGCTCCCGGATCTGAGCATAGACTAGCATGGTTCCCCAGCCAGCCCTCGACCTCATAGG
GGCAGCAACACGCCCCCTGCCGCACAACCACGGTCAGATCTGGGAACGAACCAGCCCGCCCCGACATCCACCGGCCAGCC
ATGACCGGAAGGAAAGGGCTGCTTGTAGTGGTCGATAATGAGCGACCTAGGATGGGGTGGTTGTAGCCTTCCTAGCCACA
CTCCTGCAACCTCGGGCTGGACGGCCTCAAGCAGGCGGCAAAGATTGGAGCCCAACCAACATCGGTTAGCACAGCCACCG
GAGGAGACATACGACTGCCTCGGGTGAAGAAAAGGACGCATCCAAGGGAGAGAAGCCCTGCTGCCACCGCCTTCGGCACG
GGGCTTCGCCCGGCGGTGGCGAGC---------------AGAGAG--GGCAAGAAGCGGGCTGGAGGTGGCGAAGATGGA
GACGCCTCCCAAGGTTTTTTTTTCACAAACCCCAAATTTATCTTTTTTTTATAAGAGCTACACATATATTCAAATGCTTT
GAAATTTGGCATGAACATCACACACTCAGTCATCTTTCTCCACACAAAAA-TTCAGCTTTTTTTGAATTTATGTAGTTGT
TTTAAGGATTTTC---TTTTTTTGTTTACTCCCGGATTCGTCTGAGACGGGGAGCCAAAACGCCTCATCCCCTCTCCATA
A-------------------------------------------------------------------------------
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>chr3A_852
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-------------------------------------------------------------------TCCATCCAACAAT
CAGTTCGAACGGGACAAGGAATGC-AATGGAGTCCGGCTTCATTCCGCATCCAGTTCACCATCGATCCGTGGAGGACACA
ACAGCGTTCCGGTCCGCTGTACGTGCA-------TTTCCCGGAGCATTCCGCTACGCTACATATATCAGATAGCCAGCCA
ACCTCATGATATTCATACGCCACCGACGATCGATCCAAGCCTCATACAATCCGAGTTGTCTCCTCGTCATCGTCG-----
----------AATTCCACCGGGAGATCGAGACCATGTGCTTCGTGGACGGCCAAACAACTAGCGCTGGGTGCAAGTGGCC
GCTCGCGCTGACTGTGCACGAGCACGAGCGCCACCCTGCCGCTGCAGAAGAACGGGCCAAGCGAACTAACATGTCAGCGG
TTGCCGGCGCCCTGGTCATGTACGTGGCGCCGGCGCCGCCCGTCCAGGACGAGCCCGTAAATGCTGTCCCGCTGGCCACC
GCCGCTCCGAGAAGGAGCAGGGAGGCGCCGGACTGGATACCCAAGTTTCTTCTCCCGTAACTGAGACTGTGCGCTGACTT
AACCCTGACCTTCATCGACGAGAAGGCCGTGACGAAGAGCGACCTTGACGCTCAGCAGAACCGGTTCCGCCTCCGGGCCG
ACGGCGTGTGCCGGCTACTCCCAATCCTCACCGACAAGGAGGCCGCGGCTGCCAACCTACTATGCGGCCAACCACGCATT
CGAAGGGCAAGTCCAACGACACCGCCAGAGGACGACGACAGGGTGCAGGGGAGGAGGGGAAGGAAGAGGCCGGGGAGGAA
GCACGGCGGGCTACCGGTGCACGTGGTGGCCAGCAGCAACCTGAGCATCGAGATGACGCAGCTGGAGCTGTCGAGGTGGG
ACGGCAGCCAGGGCACGGTCATCAAGGGAGCAGGGTACCACGACTTCGTCGGCAAGTGCGGCTTCAGGGAGGATGACCTC
GTTGAGATATGGGCATTCAAGCAGAGGGAATTCCGGAACTTTGGGGTGAATATGTGCGATGAGAGCCCGCTCTATATCGT
GCTAGTTAACAAACAAGCACGGCGAGCAGCGGCGGCCCGTGGTGTCGCCGTTGCCGGCCCCGCCGCGCGATCGACCATGC
CGGCGCTGTAGGTAGGACCTCTGGTTCGCACAG------------------------TTTTTTTTCTTTTCTGATCAGGA
CTTTCAAGAATCTTTTTTTCCCGATCAGGACTTTCCAGAACCCTTTTTTCCCGATCAGTATTGAGCCGAAAAGAGTTGTC
AAGAACTGGGGTAAATGTAATACGCTCAGTTCCACG--TTAGACCTTGTGGACGAGAGGTGGG-----------------
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>chr6B_2672
TTGTTTAGGGGG--------------------------------------------------------------------
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----------GGACTACAATAGAATCTGAGCATCCTGTGCAAAAATAGAAAAAGCATG-CTGGACCATTAGATGGGAGAT
GAATGGTACAGATCTAGGTGGAGGGATCTGA-ACCACTTAATGTATGTTTCACAGAGAACCCCCTGTCAATAGTTAGATA
TGAAG-TAGCACATTTGCAGTATAGACCTCGAGTCTGCATGAATTATGAGCCTTTT-TAGCTATGCACAGTGTTGACGCC
CATCTCGTATTAGT-TTGATACAGAA-TATTTATAAATATTTACTTCACAAAATTGATACACATTTAAGTGTTTATTTTG
GCCTTTGAGACATCGCTAATTTTTCAAGAGAATTGAACATCTTTGTTACTAA----AAAGCATCAATTTGTATCACAAAT
ATTTCAACACA--------T--------TAAGCCATCCCAGATCAAGCAGA-------AGTACATATACATGTCAAACTG
GGAAGTATCCGAATGCATGAGCAACTTAAGGACCGAAA-TT----------A--------------GTATTTGAATACAT
GGGAACATAACAC--AAGAGG--CGTACATAGATCATTTTTAGTACATGGCCGGCAGGAC------
>chr3A_2676
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--TGTGGGATGGACTACAATAGAATCTGAGCATCCTATGCAAAAATAGAAAAAACATC-CTGGACCATTAGATTGAAGAT
GAATGGTACAGATTTAGGTGGAGGGATCTGA-ACCACTTAATGTACGTTTCACAGAAAACCCCCTGTCAATAGTTAGATA
TGAAA-CAACACATTTGCAGTTTAGACCTTTAGTCTTCGTGAAATCTGAGCC-TTT-CAGCTATGCACCATGTTGAAGCT
TTTTTCCTCTTAGT-TTGATACAGAA-TATTTACAAATATTTACTTCATGAAATTCGTACACATTTAAGTGTCTATTTTG
GCCTTTGAGGCATCACTTATTTTTCAAGAGAGTTCAACATCTTGGTTAATAA----AACGCATCAATATGTATCAAAAAT
ATTTCAGCACATGAGAGAAT--------TAAGCCATCCCAGATCAAGCAGA--------CTACATATACATATCAACCT-
GGAAGTATCCGAGTGCATGAGCAAATTAAGGATTGAA------------------------------TATTTGAGCACAT
GAGAACATAGCAC--AAGAGG--TATACATAGATCGTATTTAGTACATGACCGGCAGGACC-----
>chr1A_2677
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---GGGGGCTGGACTACAATAGAATCTGAGCATCCAGTGCAAAAATAGAAAAACCATC-TTGGACCACTGGATTGAAGAT
GAATGATACAGATTTAGGTGGAGGGATCTGA-ACCACTTAATGTACGTTTCACAGAAAACCCCTTGTCAATAGTTACATA
TGAAA-CAACACATTTGCAGTATAGACCTTGAATCTTCATGAAAATCGAGCC-TTTTCAGCTATACAC-GTGTTGATGCC
CATCTCCTCTTAGT-TTGATACAAAA-TATTTATAAATATTTACTTCATGAAATTCATACACATTTAAGTGTCTATTTTG
TCCTTTGAGACATCACTAATTTTTCAAGAGAATTGGACAGCTTGGTTACTAA----AAAGCGTCTATATGTATCACAAAT
ATTTCAGCACAAGGGAGAAC--------TAAGCCATCCCATAT------------------ACATATACACGTC-AAAT-
GGAAGTATCCGAGTGCATGAGCAAGTTAAGGACCGAAA-T-----------A--------------GTATTTGAGCACAT
GAGAACTTAACAC--AAGAGACATATACATAGATCATTTTTAGTACATGGCCGGCAGGACCAAGTG
>chr4A_2679
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-----GGGCTGGACTACAATAGAATCTGAGCATCCAGTGCAAAAGTAGAAAAACCATC-CTGGACCACTGGATTGAAGAT
GAATGATACAGATTTAGGTGGAGGGGTCTGA-ACCACTTAATGTACGTTTCACAGAAAACCCCTTGTCAATAGTTACATA
TGAAA-CAACACATTTGCAGTATAGACCTTGAATCTTCATGAAAATCGAGCC-TTTTCAGCTATACAC-GTGTTGATGCC
CATCTCCTCTTAGT-TTGATACAAAA-TATTTATAAATATTTACTTCATGAAATTCATACACATTTAAGTGTCTATTTTG
TCCTTTGAGACATCACTAATTTTTCAAGAGAATTGGACAGCTTGGTTACTAA----AAAGCGTCTATATGTATCACAAAT
ATTTCAGCACAAAGGAGAAC--------TAAGCCATCCCATAT------------------ACATATACACGTC-AAAT-
GGAAGTATCCGAGTGCATGAGCAACTTAAGGACCGAAA-T-----------A--------------GTATTTGAGCACAT
GAGAACATAACAC--AAGAGACATATACATAGATCATTTTTAGTACATGGCCAGCAGGACCAAGTG
>chr3D_2684
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----------GGACTACAATAGAATCTGAGCTTTGTATGCAAAAATAGAAAAAGCATC-CTGGACCACTGGATTAGAGAT
GAATGGTACAGATTTAGGTGGGTGGATCTCAGACCACTTAATGTAGATTTCATGGAAAACCCCCTGACAACAGTTGGATA
TGAAAATAGGACATTTGCAGTATACACCTCGACTCTTTGTGAAATACGACCATTTT-CAGATACGCACAGTGTTGATGCC
CATCTCCTCTTACTCTTGAGACAAAA-TATCTGCAAATATTTACTGCATGAAATTCATAAACAT-----TGTCTTTTTTG
GCCTCTGAGACATCACTAATTTTTCAGGAGAGTGGAACATCTTGGTCACTAA----AAAACATCAATATATGTCACAAAT
ATGTGT--ACATGACAGAGT--------TAAGCCATCCTAGATCAAGCAGA-------ACTATACATAGATGTCAAACT-
GGAAGTATCTGAGTGCATGAGCAAAGGAAGGACTGAAGGCAGGGCGCAGCAA--------------GCATTTGAGTACAT
GACAACACAACACAAAAGAGG--CATGCATAGATCATTTTTAGTACATGGCCGGCAAGACCGAGT-
>chr3A_2684
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----------GGACTACAATAGAATATGAGCATCCTATGCAAAAATAGAAAAAGCATG-CTGGACCATTATATTGGAGAT
GAATGGTACAGATCTAGGTGGAGGGATCTGA-ACCACTTAATGTATGTTTTACAGAGAACCCCTTGTCAATAGTTAGATA
TGAAG-TAGCACATTTGTAGTATAGACCTCGAGTCTTCATGAATTATGAGCCTTTT-TAGCTATGCACAGTGTTGACGCC
CATCTCGTATTAGT-TTGATACAAAA-TATTTATAAATATTTACTTCAAAAAATTGATACATATTTAAGTGTATATTTTG
GCCTTTGAGACATCACTAATTTTTCAAGAGAGTTGAACATCTTGGTTACTAA----AAAGCATCAATTTGTATCACAAAT
ATTTCAGCACA--------T--------TAAGCCATCCCAAATCAAGCAGA-------AGTACATATACATGTCAAAGTG
GGAAGTATCTGAATGCATGAGCAACTTAAGGAGCGAAATT-----------A--------------GTATTTGAGTACAT
GGGAACATAACAC--AAGAGG--CATACATAGACCATTTTTAGTACATGGCCGGCAGGACGAAATG
>chr4D_2684
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----------GGACTACAATAGAATCTGAGCATCCTGTGCAAAAATAGAAAAAGCATA-CTGGACCATTAGATTGGAGAT
GAATGGTACAGATCTAGGTGGAGGGATCTGA-AGCACTTAATGTACGTTTTACAGAGAACCCCCTGTCAATAGTTAGATA
TGAAG-TAGCACATTTGCAGTATAGACCTCGAGTCTTCATGAATTATGAGCCTTTT-TAGCTATGCACAGTGTTGACGCC
CATCTCGTATTAGT-TTGATACAAAA-TATTTATAAATATTTACTTCACAAAAATGATACACATTTAAGTGTCTATTTTG
GTCTTTGAGACATCACTAATTTTTCAAGAGAGTTGAACATCTTGGTTACTAA----AAAGCATCAATTTGTATCACAAAT
ATTTCAGCACA--------T--------TAAGCCATCCCAGATCAAGCAGA-------AGTACATATACATGTCAAAATG
GGAAGTATCCGAATGCATGAGCAACTTAAGGACCGAAA-TT----------A--------------GTATTTGAGTACAT
GGGAACATAACAC--AAGAGG--CATACATAGATCATTTTTAGTACATGGCCGGCAGGACGAAATG
>chr7B_2685
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-----------GACTACAATAGAATCTGGACTTGTAGTAGAAAAATAGAAAAAATGGATCTGGACCACTAGATGGGAGAT
TGATGGCCCAGATTTAGGTGG-GGGATCTCAGACCACTTAATGTACTTTTCACAGAAAACCCCCTACAAATGGTTAGATA
TGAAA-TAGCATGTTTGCGGTACAGACCTTGAGTCTTTGTGAAATATGACCATTTT-CAGATATGCACAGTGTTGATGCC
CATCTCATCTTAGT-TTGATACAAAAATATTTGCAAATA-TTACTTCATGAAATTCATACACATTTAAGTGTCTATTTTA
GCCTATGAGACATCATTAATTTTTCAAGAGGGTCAGATATCTTGGTTACTACTAAGAAAACGTCAATATATATCACAAAT
TGTTTAGCACA--------TGAGAGAATTAAGCCATCTCATATCAAGCAGA-------ACTACATATACATGTCAAACT-
AGAAGTGTCTGAGTGGATGAGCAAATTAAGGACTGGAA-CT----------ATCACCGCGCAGCAAGCATTTGAGTACAT
GAGAATACAACAC--AAGAGG--TATACATAGATCGCTTTTAATACATGGCCAGCAGGACCGAGT-
>chr2B_2688
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--------------TACAATAGAATCTGAGCATCCTGCGCGAAAATAGAAAAAGCATC-CTGTACCATTAGATTGAAGAT
GAATGGTACAGATTTAGGTGGAGGGATCTGA-ACCACTTAATGTACGTTTCACAGAAACCCCCCTATGAATAGTTAGATA
TGAAA-TAACACATTTGCAGTTTAGACCTTTAGTCTTCGTGAAATCTGAGCCTTTT--AGCTATACACCATGTTGAAGCT
CTTTTCCTCTTAGT-TTGATACAGAA-TATTTATAAATATTTACTTCAGGAAATTCATACACATTTAAGTGTCTATTTTG
ACCTTTGAGGCATCACTTATTTTTCAAGAGAGTTGAACATCTTGGTTAATAA----AAAGCATCAATATGTATCACAAAT
ATTTCAGCACA--------TGAGAGAATTAAGCCATCCTAGATCAAGCAGAGTAGCAGACTACATATACATGTCAACCT-
GGAAGTATCCGAGTGCATGAGCAAATTAAGGATTGAAA-----------------------------TATTTGAGCACAT
GAGAACATAGCAC--AAGAGG--TATACATAGATCATATTTAGTACATGACCGGCATGACCAAGTG
>SNPs
-------------------------------------S---S-------S------------------------------
----------------------------------------------------------------------S---------
------------------SS----------S--------S----------------------------------------
----------------------------------------S---S--S---S-----------------------S----
S---------------S---------------------S-------------------S---S----------------S
-----S---S--------------S-------S-------S-------------S---S---------------------
-------------S----SSSSS-SSSSSSSSSSSSSSS----------------------S------------------
S----------------------S--------S----------------------------S--S---S-----------
------------------------------------------S-----------------------------S-S-----
-----S----S--SSS---S--S-------------------------S-----S-------------S-----------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S------
-------S----------------S--------S-----------S--------S--S--------------S------S
----------SS-SSS--SSSSSSSSSSSSSSSS-------------------------S--------------------
-------S----------S----------------------------S------S-------SSS-SSSSS-SSSSSSSS
SSSSSSSSSS----------S-----------------------S--------------S--S--S---------S----
----SS----S------S-----------S-----S---------------------------S----------------
-------------S----------------------------S---------S------------------------S--
---S-----------------------------------------S-S---------S----------------------
----S--------------------------------------------S----------------S---------S---
--------S--------------S-------S---S-S-----------S-------------S--S----------S--
--------------S-S----------------------SS--------------S-----S--------S---------
------------S--SS-------------------------------------S-S-----------------------
-----------------------------------------------S--------------------------------
--S--------------------------S--------------------------------------------------
------S---------S----------S---------------------------------------S---SS-------
------S---SSSSS-SS-S-----S-------SSSSSSSSSSSSSSSSSSSSSSSS-----------------------
-----S----S-S------------------------------------------------S-------------S----
--S--------------------------------SSS--------------------SS--SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
---------------------------------S----------------------------------S-S---------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S-----------------------------------------------------------
>forward_769
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TCCCGGGTTCATCTGAGTCT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_2036
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------ACACGCTGTCATGCAAAACC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>forward_857
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------TGAACGTATACGAGCCAGGC-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_2449
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------TTGCAACAGGCTGGTTGGTA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
