>input_sequence_56784
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-------------------------------ATGGCGGCCTCCTCCCCCTCCGCCCTCGCGCTCTCCCCCTCCACGCGGG
TAAGCCATCTCAGCCTCGCTACCATCCTCGATTCCTCGTGCCTTTGCTTGACTTCTTTCTGCTCGTTTCTCGCTTGCTGC
TGCTGCTGCTGCTGCAGGTGGTAGCTGGTCCGTCCCTGCTGCTTGCTGTGAAGCGGACGCCGGCGACGCGAGTGGCCGCC
GCTCCCTCCGGCCAGCTCCCCGCCTGCTCTTGGGG---------C---------CCTCTCCGGCCGGAGCTCGCCCCGGC
CCCTGGCCCCTGCGCCGCCCGCTGCAGGGCGCCTCTGCTCCGGCCTCGCGCATGTACGCACTCGCCACTCTCGCCACA--
CTCT---TTTCTCTTCACCGAGAGTTGGCAGTTCCACTCTGGTAGCCCGTCCACGACCTCGCAAGGCCATGGGTTGACTG
ACTGAATGAATTATTTCTTGCTCCTCACGTACAGGGATGTCCACGTCCCAGATTGCCAGCTCCGCCTTCACACTGGGCAC
CGTCGCCGTCCTCCCCTTCTACACGCTCATGATCGCCGCCCCCAACGCCAGCATCGTAAGCCCACC-----CCCACCTTC
CTCTTCTTCCCCACGCGGCCAGAGTA-------GACTCATGTCTTCTTATTCT---TGCTGC--------------CGCA
GACTAAGCGCACCGTGGAGAGCACCGCCCCCTACGTGGCGCTCGGCCTCCTCTACGCCTACCTGCTCTACCTCTCCTGGA
CCCCCGACACCATCCGCGCCATGTTCGCCAGCAAGTACTGGCTCCCCGAGGTCAGTCCT---------CACACTCTGAAT
GTTCAATGCCATTACTGGCTCTGCACTCTCACAGCAAAACTAAAATTCAGT---AGCGTTGTGCATTGTCTGAACGTTCT
TGTGCCTCGGCATATCACATATGTT-------TGGTTCCTTGATCTTGCGTGTAGTTGCCTGGCATTGTGAGGATGTTCG
CGAGCGAGATGACCGTCGCCTCCGCCTGGATCCACCTCCTTGCCGTCGACCTCTTTGCTGCAAGGTCAGTCAGCCCTTGT
TTCTTCACTTTCAAGTGTATGCGATTGTGAACC----------AGATGTTCATGTTTGTGTTTCCTT-TTTTCCTTGCTG
GTGATGCAGACAAGTGTACCATGATGGAATCAAGAACAACATCGAGACCAGGCATTCGGTTTCGCTGTGCCTGCTCTTCT
GCCCCATCGGGATCGCCGCTCACGCGCTGACCAAGGTACTCGCGGGTTCCACAGGTCGATCAC----ACTGA--------
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>chr3D_1_TraesCS3D01G037000
GGACCTCACCGCCGACCTTGAGAAGCTCCAGGCGATGGCGTTGGAGCTCCAGGCCATGGCGTCGGAGTACCTGCGGTCCT
TCTGAACATACCGTTTATACTGAGAGTGGAGAGGGGAGATGGGAGAGAAATAAAGAGGGGAGAGGATAGGTCCTAGACAA
AGAGATATA----CTTAGTTGGTCTGAGTTGGTTACCGTTTTTAGCATCTTTCTCCCAAGACAGTT-CTCCTGGGAGGAG
GTGGCAGCGACAGTTGTTTTTAAGTTATGTTAATTAATCCGTAGACTGATGA------------GGATGAGAAGGTTTGG
GTCAAATGGCCCGACCT-GTGGACTGATTAGAAATCCTACCTGTCATGCCATGTTGGTCTGAGACAGTTTTGGTTTT-AA
ATCAAAAGTGTTGTTGAAACTTATTACCATGTCTCTGTTGTTGGTTTGTGTTTTATCCACTTTCACTTTGTGATGCTGCA
-------------------------------------------------------------------------TGCTGTT
CTTCTCTTCC------TTTTTTTTGTTTTTTGCAGGCA------------------------------GTGTGTTCGTCT
CTTCTCTCTTGCCTTGCCGAGGCAACTAACTGTGGGTTGCAG---AGTCGTGCGGGTATCTGTTGGAGATGACGGCTCGG
AGC-----------AGGCACGTGTCGGCGAGGAGGCGGGCGGAGAGAGGAGGGGAGGGGGGTGTCCCAGTGAAGGCTCGG
CACATGGGCAACATGGCTACAGTTGCCAGCGACCGAGGTGAGAACGTACTACT--ATAATTGGTGGTGAACCTGG-----
-------ACGGACGGTGGTGGTGGTGGCCACCGTCCAGGGTCCAGGCCCCCTCCCACTCCGGCGGGACCCGCCACCGACC
T-GACCTGACCTGCCCTTCCCAAGATGGTAAGGCAAACGAAATCAGTGGAGTAGTCACTCAATCCTTCCTACCATACCAC
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----------------------------------------------------ACCGCACCACAGCTCGGCGCCTTGCCTG
CTTCGCCACTCCCACTAGGAGAGGACTAGTACAAAGGGGAAGGAGGGGGAGGCCCTCTCTCCCCTTC-------TCCTCC
CGACCC---------------CCGGCTGGAAATGGCGGCCTCCTCCCCCTCCGCCCTCGCGCTCTCCCCCTCCACGCGGG
TAAGCCATCTCAGCCTCGCTACCATCCTCGATTCCTCGTGCCTTTGCTTGACTTCTTTCTGCTCGTTTCTCGCTTGCTGC
TGCTGCTGCTGCTGCAGGTGGTAGCTGGTCCGTCCCTGCTGCTTGCTGTGAAGCGGACGCCGGCGACGCGAGTGGCCGCC
GCTCCCTCCGGCCAGCTCCCCGCCTGCTCTTGGGG---------C---------CCTCTCCGGCCGGAGCTCGCCCCGGC
CCCTGGCCCCTGCGCCGCCCGCTGCAGGGCGCCTCTGCTCCGGCCTCGCGCATGTACGCACTCGCCACTCTCGCCACA--
CTCT---TTTCTCTTCACCGAGAGTTGGCAGTTCCACTCTGGTAGCCCGTCCACGACCTCGCAAGGCCATGGGTTGACTG
ACTGAATGAATTATTTCTTGCTCCTCACGTACAGGGATGTCCACGTCCCAGATTGCCAGCTCCGCCTTCACACTGGGCAC
CGTCGCCGTCCTCCCCTTCTACACGCTCATGATCGCCGCCCCCAACGCCAGCATCGTAAGCCCACC-----CCCACCTTC
CTCTTCTTCCCCACGCGGCCAGAGTA-------GACTCATGTCTTCTTATTCT---TGCTGC--------------CGCA
GACTAAGCGCACCGTGGAGAGCACCGCCCCCTACGTGGCGCTCGGCCTCCTCTACGCCTACCTGCTCTACCTCTCCTGGA
CCCCCGACACCATCCGCGCCATGTTCGCCAGCAAGTACTGGCTCCCCGAGGTCAGTCCT---------CACACTCTGAAT
GTTCAATGCCATTACTGGCTCTGCACTCTCACAGCAAAACTAAAATTCAGT---AGCGTTGTGCATTGTCTGAACGTTCT
TGTGCCTCGGCATATCACATATGTT-------TGGTTCCTTGATCTTGCGTGTAGTTGCCTGGCATTGTGAGGATGTTCG
CGAGCGAGATGACCGTCGCCTCCGCCTGGATCCACCTCCTTGCCGTCGACCTCTTTGCTGCAAGGTCAGTCAGCCCTTGT
TTCTTCACTTTCAAGTGTATGCGATTGTGAACC----------AGATGTTCATGTTTGTGTTTCCTT-TTTTCCTTGCTG
GTGATGCAGACAAGTGTACCATGATGGAATCAAGAACAACATCGAGACCAGGCATTCGGTTTCGCTGTGCCTGCTCTTCT
GCCCCATCGGGATCGCCGCTCACGCGCTGACCAAGGTACTCGCGGGTTCCACAGGTCGATCAC----ACTGACGACCGAT
TGCCTGTAGGCAGGCTCCCCTTGTTTAGATGTCTCAGATCGTGAGGTTCAGATATA--TGAAT-AAAATTGATTTGGTGC
ACCATTTGTTCTATATAGATTTCACATTGATTGTTCCCACCCATTCTATTGGAATTGGCTCAGGAAACTGAATCTACTCG
CCATCATGGGTTCATAGAAGGGCTAGTAGAACAGG--TTATTTGTACCATC-GAGTCATGACACCAAGAAATGTACAACT
AATTTATATCATGTCTCAGATTTAACGGTAACACACTAA-TGTAAAGAAAT-----------------------------
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------------------------------------------------------------------GAA-GAAGATGAGA
GAAAGAT--AAAATATCGCTTTCAACTGCACTTGTGGATTTGT--TTATCGTTCAAGCAAATAG----------------
----------ACTACAACTTTACAACAATTGAATTTCTGAATGCTGTGCCAAGGTTGCGTGACTCTTATTA---CAGAAC
GCGTAAACCTATTGAAGCGGTAAGTGATC--GAACTGGCGTGTCAGCGGCAGCTACAATACCT-------TCCAGCCCGT
A----TATCTACTCTATATTTGTACAAGTAGTATAGCTACTTTACTGTATGTATAACGGCATAGCATCTGCTTCTTTCTT
CTTGTCGAATATACGGTTGAGTATCAGCGCCAGTCTGACGCCGGCCTGTGCTAGCCTCTTCTCCACAACCGGGTACCGGG
TGAAGTAATAATCATCTGCATTTCAGAAGAGTTGC-CAACCATTAGCAC------------TGCACTCTAGCTAGGCAAA
ATGTATACACTGCTGTA----GTTTCTACAAGTACTGCTGTGAACATAGACACTG--------ACCTCCTAGGGTGATGT
TCTGCACCACATCTTTGTAGGCATAGTTGCATGCAAGATTTATGCTCTCGATCGCGTAGCTGCAAGGCGGA--TTTGATA
-----CCATATCATGTCAAATCTTGTGATCGAATCAGTTGCACAA--GACATGAACTG--AAAAAAGCGCAAGTGTTTGG
GTATGGAATCATACTCGTTTGCGCAGGTCGCCTCTTTGTTGGCACAGTTCTCCCAGT
>chr3A_1
GGACCTCACCGCCGACCTCGAGAAGCTCCAGGCGATGGCGTCGGAGCTCCAGGCCGTGGCGTCGGAGTACCTGCGGTCCT
TCTGAACATACCGTTTATACTGAGAGGGGAGAGGGGAGAGGGGAGAGAAAT-AAGAGGGGAGAGGATAGGTCCTAGACAA
AGAGAGATATAC---TAGTTCGTCTGAGTCGGTTACCGTTTTTAGCATCTTTCTCCCAAGACAGTT-CTCCTGGGAGGAG
GTGGCAGCGACAGTTGTTTTTAATTTATGTTAATTAATCCGTAGACTGATATCCGTGATGA----GATGAGAAGGTTTGG
GCCAAATGGCTCGACCT-GTGGACTG-----------------------------------AGACAGTTTTGGTTTT-AA
ATCAAAAATGTTGTTGAAACTTA-TACCATGTCTC---TGTTGGTTTGTGTTTTATCCATTTTCACTTTGCATGCTG---
-----------TTGTGTTTTATCCATTTTGCACTTTGTATGCTGTTGATTTAATCGTTT---GTTTCACTCTCGGGTCTT
CTTTTCTTGCATCACTTTTTTTATTTTTTTTGCAGGCA------------------------------GTGTGTTGGTCT
CT------------CGCCGAGGTAACTGACTGTGTGTTGCAGCAGAGTGGTGCGGGTATCTGGTGCTGATCACGGCTACT
CGGAGCAGGCACCGAGGCACGTGTCGGCGAGGAG-----------------------------------TCAAGGCTCGG
CACATGGGCAACATGGCTACAGTT---------TGAGGTGAGGATGTACGTACTAATAATGGATCGTGAAGCTGGACGTG
GTTGAGCACGGACGGTGGTGCTGGCGGCCACC-------------GCCCCCTCCCACTCCGGCGGGACCCGCCACCCCCA
CCGACCTGCCCTTCCCTTCCCAAGATGGTAAGGCAAACGAAATCAGTGGACTAGTCACTCAATCCTTCCTACCATACCAC
GGAAGTGAATCCTCTAACACCCTTCCGTTCTTCACTTCTATATGATTAAGGCTAAAATGATTTAAATTAATTTGCAAATT
ACAAATCTACTTTATACACTTACAAAAATTACATATAGATAAAATTAATTTTAAATTTATTTATCTCAATAGTAACTATG
TACAGTGCCTACTTAAATAGATAATACAGTGTTTGCTACAGTATCCATGACTTTTCTTTTGTGTTTTACACTAGTTTGCA
CTGTAGCTATGTTAGAGGATCCACTTCCCCATACTTCCCCATACGACACCACACCACACCACAGCTCGGCGCCTTGCCTG
CTTCGCCACTCCCACT-----------AGTACAAAGGGGAAGGAGGGGGAGGCCCTCCCCCCCCTTCTCCTCCTTCCTCC
CGACCC---------------CCGGCAGGAAATGGCGGCCTCCTCTCCCTCCGCCCTCGCGCTCTCCCCCACCACGCGGG
TAAGCCA--TCAGCTTCGCTACCATCCTT--------GTGCCTTTGCTTGACTTGTTTCTGCTGACTTCTCGCCTGCTGC
TGC---A------------GGTAGCTGGCTCGTCCGTGCTGCTGGCGCTGAGGCGGACGCCGGCGACGCGCCTGGCCGCG
GTTTCCTCCGGCCAGCTCCGCGCCTGCTCTTGGGG---------CGCGCTGCGCCATCTCCGGCCGGAACCCCCCCGCTC
------------------------CAGGGCGCCTCTGCTCCGGCCTCGCGCATGTACGCACGCACGCCACGCTTCTCTCC
CTCTTTCTTTCTTTTCACCAAGAGATGGCAGTTCCACTCTAGTATCCGGTCGACGACCTCGCAAGGCCATGGGTTGACTG
ACTGACTGAATTCATTCTTGCTCCCGACGTACAGGGCTGTCGACGTCCCAGATTGCCAGCTCCGCCTTCACCCTGGGCAC
CGTCGCCGTCCTCCCCTTCTACACGCTCATGATCGCCGCCCCCAACGCCAACATCGTAAGCCCACCATTGCTCCCGCGAC
TTCAATTTTTTCACCCGGTACACGAGGCGGCCGGACTCATGTCTCCTTCTTGCTGCTGCTGC--------------CGCA
GACTAAGCGCACCGTGGAGAGCACCGCCCCGTACGTGGCGCTCGGCCTCCTCTACGCCTACCTGCTCTACCTCTCCTGGA
CCCCCGACACCATCCGCGCCATGTTCGCCAGCAAATACTGGCTCCCGGAGGTCAGTCAGCAGTCCTCACACTCTCTGAAT
GTTCAGTA-------------------CAAGT-------------------------ATTGTGCAGTGTCTGAATGTTCT
TGTGCCTTAGCAAAAAGT----ATAACATGTGTGGTTCCTCGATCTCGCGTGTAGTTGCCTGGCATTGTGAGGATGTTCG
CGAGCGAGATGACCGTTGCCTCCGCCTGGATCCACCTCCTTGCCGTCGACCTCTTCGCCGCAAGGTCAGTTGGCCATGTT
TTGTTTGCTTTCAAGTGTATGTGATTGTGAGGACTGTGGTGGTAGGTGTTCATGTTT--------TCCTTGTTCTGGCTG
GTGATGCAGACAAGTGTACCAGGATGGCATCAAGAACAACATCGAGACCAGGCATTCGGTTTCGCTGTGCCTGCTCTTCT
GCCCCATTGGGATTGCCGCTCATGCGCTCACTAAGGTACTGGCGGGTTCCACAGGTCGACCGC----ACTGACGACCGAT
TGCGTGTAGGCAGGCTCCCCTTGTTTAGATGGCTCAGATCGTGAGATTCAGATATA--TGAAT-AAAATTGATTTGATGC
ACCATTTGTTCCATGTAGATTTCACATTGATTATTCCCACCCATTCAATTGGAATTGGCTCGAGCAACTGAATCTACTCT
TCATACAAG----------GGC----TAGGACAGC--TTATTTGTACTATGTGAGTCATGTCACGAAGAAATGTACATCT
AATTTATATCATGTCTCAGATTTAATGGTGAGACACAAA-TGTAAAGAAA------------------------------
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---------------------TGAACTGCACTTGCGGATTGGG--TTATTGTTCAAGCACATAGTAGACAAATA-GAGGG
T-----TTATACTACAACTTTACAACAACTGAATTTCTGAATGCTCTGCCAAGGTTGCGTGATTCTTATTA---CAGACT
GTGTAAACCTATAGAAGTGGTAATTGATC--AATCTGGCGTGTCAGCGGCAGCTACAATACCT-------TCCAGCCCGT
A----TATCTATATG---TGTAC-A----AGTATAGCTATTTTACTGTATGTATAACGGCGTGGTATCTG---CTTTCTT
CTTGTCGAATATCCGGTTGAGTATCAAGGCCAGCCTTACGCCGGCCTGTGCTAGTCTCTTCTCCACAACCGGGTACCGGG
TGAAGTAATAATCATCTGCATTTCGGAGGAGTTGC-CAACCATTAGCAC------------TGCACTCTGGCT-GGCAAA
ATGCATACACTGCTTTA----GGTTTTACAAGTACTGCTGTGAACATAGACACTG--------ACCTCCTAGGGTGATGT
TCTGCACCACATCTTTGTAGGCGTAGTTGCACGACAGATTTATGCTCTCAATCGCGTAGCTGCAAGGCGGA--TTCGATA
-----CCATGCCATGTCAAATCTTGCGATCGAATTAGTTGTACAG--GACACGAACTGGAAAAAAAGGGGAAGCAATGGG
ATAT-GAATCCTACTCGTTTGCGCAGGTCGCCTTCTTGTTGGCGCAGTTTTCCCAGT
>chr3B_2
-GACCTCACCGCCGACCTTGAGAAGCTCCAGGCGATGGCGCTGGAGCTCCAGGCCATGGCGTCGGAGTACCTGCGGTCCT
TCTGAACATAGCGTTTATACTGAGAGTGGAGAGTGGAGAGGGGAGAGAAATAAAGAGGGGAGAGGATAGGTCCTAGACAA
AGAGAGAGATATACTTAGTTCGTCTGAGTTGTTTACCGTTTTTAGCACCTTTATCCCAAGACAGTTCCTCCTGGGAGGAG
GTGGCAGCGACAGTTGTTTTTAAGTTATGTTAATTAATCCGTAGACTGATGATATCCGTGAGGAGGATGAGAAGGTTCGG
GCCAAATGGCCCGACCTTGTGGACTGATTAGAAATCCTGCCTGTCG-----TGTTGGTCTGAGACAGTTTTGGTTTTTAA
ATCAAAAGTGCTGTTGAAACTTATTACTATGTCTC---TGTTGGTTTGTGTTTTATCCACTTTCACTCTGTATGCTGTTG
ATTTAATCGTTTTGTGTTTTATCCACATT-CACTTTGTATGCTGTTGATTTAATCGTTTTACGTTTCACTCTCTGGTGTT
CTTCTCTTGTTTTTTTTTTGTTTTTTTTTTTGCAGGGAGATGAGCTTCTGTTGATTTATTTGACGGCGGTGTGTTGGTCT
GT------------TGCTGAGGTAACTAACCATGGGATTGCATAGTCCTCTGCTTCCTCCAGAGCCGCCTGAGGTGAGTA
CTTGGTAATGGCGGC--CACGTGTCGGCGAGGAGGCGGCC----------------------GTCCCAGTCAAGGCTCGG
CACATGGGCGACATGGCTACAGTTGCCGGCGACTGAGGTGAGAAGGTACTACT--ATAATGGGTGGTGAACCTGG-----
-------ACGGAAGGTGGTGCTGGTGGCCACCGC------------CCCCCTCCCACTCCGGCGGGACCCGCCACCCCAC
C------GACCTGCCGTTCCCAAGATGGTAAGGCAAACGAAATCAGTGGAGTGGTCACTCAATCCTTCCTACCATACCAG
AT------------------------------------------------------------------------------
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----------------------------------------------------ACCACATCACAGCCCGGCGCCTTGCC--
------------------------ACTAGTACAAAGGCGCTCCGCT------CCCCGTCTCCCCTTCCCGGAACACGGCG
ACTCCACCACCACCACGACTACCGGCTGGAAATGGCGGCCTCCTCCCCCTCCGCCCTCGCGCTCTCCACCACCACGCGGG
TAAGCCA--TCAGCTTCGCTACCATCCTCATGCCTTTG---------TTGACTTCTTTCTGCTGACTTCTCGCTTGCTGC
TGCTCCA------------GGTAGCTGGCTCGTCCGTGCTGCTTGCTGTGAGGCGGACGCCGGCGACGCGCGTGGCCGCC
GTTCCCTCCGCCCAGCTCCGCGCGTGCTCCTGGGGGGCGCCGCTC---------CATCTCCGGCCGGAGCTCGCCGCGGC
CCCTGCCCCGTGCGCCGCCCGCTGCAGGGCGCCTCTGCTCCGGCCTCGCGCATGTACGCACTCGCCACTCTCGCCATACT
CTCT---TTTCTTTTCACCAAGACTTGACAGTTACAGCAGCGC--CCGGTCGACGGCCTCGCAACGCCATGATTTGACTG
AATTATTGCTTCC------------CACGTACAGGGCTGTCGACGTCCCAGATTGCCAGCTCCGCCTTCACCCTGGGCAC
CGTCGCCGTCCTCCCCTTCTACACGCTCATGATCGCCGCCCCCAACGCCAACATCGTAAGCCCACCGCCCCCCCTCATTC
CTCTTTCTCTTCTCCTCCGCAGGCCGCGCCATTGACAGGAAAAAAACACTCACCTGCTTATCCTCGTGCCTTTCGGCGCA
GACTAAGCGCGCCGTGGAGAGCACCGCCCCCTACGTCGCCCTCGGCCTCCTCTACGCCTACCTGCTCTACCTCTCCTGGA
CCCCCGACACCATCCGCGCCATGTTCGCCAGCAAGTACTGGCTCCCGGAGGTCAC----CACTCCTCACGTTCTCTCAAT
GTTGAATA-------------------CTTGCAGCAACACCAAGATTCAGTACCAGCATTGTGCATTGTCTGAATGTTCT
TGCGCCTTAGCGAAAAGTATAAATAACATGTATGGTCCTTCAATCTTGTGCGTAGTTGCCTGGCATTGTGAGGATGTTTG
CGAGCGAGATGACCGTCGCCTCCGCCTGGATCCACCTCCTAGCCGTCGACCTCTTCGCCGCAAGGTCAGTCGGCCATTTT
TCGTTCATTTTTAGGTGTATGCGATTGTGAGGA-------GGTAGACACTCATGTTTGTGT-----T-TTTTCCTTGATG
GTGATGCAGGCAAGTGTACCAAGATGGCATCAAGAACAACATCGAGACCAGGCATTCGGTTTCGCTCTGCCTGCTCTTCT
GCCCCATCGGGATCGCCGCTCACGCGCTCACTAAGGTACTGGCGGGTTCCACAGGTCGATCACACTGACTGACGACCGAT
TGCGTGTAGGCAGGCTCCCATTGTTTAGATGGCTCAGATAGTGTGATTCAGATATATATGAAT-AAGATTGATTTGGTGC
ACCATTTGTTCCATATAGACATCACATTGATTATTTTCACCCAATCTATTGGAATTGGCTCGAGAAACTGAATCTACTCG
CCATCATGGGTTCATAGAAAGGCTAGAACTGCTGATTTGATTTGTACTATCTGAGTCCTGTTATGAAGAAATGTACAAGT
AATTTATATAGGATCTCGGATC-AGCAATGAC--ACAAA-TGTGAAGGAAT-----------------------------
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------------------------------------------------------------------CAAAGAAGATGAGG
G-AAACT--AAAACATCGCTTTAAACTGCACTTGTGGATTTGT--TTATTGTTCAAGCAAATAGACT---AATAAGAGGG
T-----TTGTATTGCAACTTTACAACTAATGAATTTCTGAAAGCCGTGCCAAGGTTGCGTGACTCTTTATATTACATAAT
G-GTAAACCTATTGAAGTGGAAATTGATC--AAAC-GGCGTGGCAGTGGCAGCTACAATACCGATTTTTGTCCAGCCCGT
A----CATATACACCTTTTGTAC-A----AGTATAGCTATTCTACTGCACGTATAACGGCATAGTATCAG---CTTCTTT
CTTGTCAAATATACGGTTGAGTATCAGCGCCAGTCTGACGCCGGCCTGCGCCAATCTCTTCTCCACAACCGGGTAGCGGG
TGAAGTAATAATCATCTGCACTTCATAGGAGTTGC-CAACCATTACCAT-----------------------TAGGCAAA
ATGCATACTACTACTGTGTTGGTTTTTAGAAGTACTGCTGTGAACATTGGCACTG--------ACCTCCTAGGGTGATGT
TCTGCACCACATCTTTGTAGGCGTAGTTGCACGACAGACTTATGCTCTCGATCGCGTAGCTGCAAGGCGTGGGTTCGATA
-----CCATATCATGTCAAATCTTGTGATCAAATTAGTTGCATGAGTCATGAACTGGC-AAAAAAAGTGCAAGTGTTTGG
TTAT-GAATCATACTCGTTTGCGCAGGTCGCCTTCTTGTTGGCGCAATTCTCCCAGT
>chr4B_1953
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--------------GTCGCCTCTGCCTGGATCCATCTCCTTGCCGTCGAACTTTTCGCCGCAACGTCTGTTGGACATTTT
T---TCACTTTCAGGTGTATGTGTTTGTGGGGACTGATGAGGTAGATGTTCATGTTT--------TT-TTGTTCTGCCTG
GCAATGCAGACAAGTGTACCATGAGGGCATCGAGACCAGGCAGAACGCCGCTCG--CGGTTTTGCTGTGCCTGCTCTTCT
GCCCCATCAGGAACGCCGCTCACACACTCACTAAGGGACTGGTGGGTTCCACAGTTCGATACC----ACTAACGACCGAT
TGTGTGTAGGTAGGCCCCTGTTGTTTAGATGGCTCATATGGTGTGATTCAGATATAT--GAAT-AAAATTGACTTTGTGT
GCCATTTGTTCCATATAGAGTTCAGATAGATTATCTCCACCCGTTCTATTGGAATTGGCCCAAGACAGTGAATCTACTTG
CCATCATGGGTTCATAGAAGGT----TAGAACAGC--TAGTTTGTACTATCTAAGTCCTGTTACCAAGAAATGTACAACT
AATTTATATCAGTTCTCACACA-AACAGTGAC--ACAAAATGTAAATGAAACCA--------------------------
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-------------------------------------------------------------------AAAGAAGATGAGA
G-AAAACTAAAGAAGTTGCTTTGCACTGCACTTGTGGATTAGCTATTATTTTTCAAGCAAATAGACT---AATA-GTGGG
T-----TTATATTACAACTTTACAACAATTGAATTTCTGAATGTTGTGCCAAGGTTGTGTGATTCTTATTA---CAGAAC
GCGTAAGCCTACTGAAGTGGTAACTGATC--AAACTGGCGTGTCATCGGAAGCTATAATACTT-------TCTAACGAGT
A----TATATATAATTTTTGAAC-A----AGTATAGCTCTTTTACTATACGTATAATGGCATATCATCTG---CTTTCTT
CTTGTCAGATACCCAGTTGAGTATCAGCGCCAGTCTGTCGCCGGCCTGTGCTAGTCTCTTCTCCACAACCGGGTACCAGG
TGAAGTAATAATCATCTGCATTTCAGAAGAGTTGC-CAACCGTTAGCAC------------TGTACTCTAGCTAGGCAAA
ATGCATATTGTCTATAGTTTA--TTTTTACAGTACTGTTGTGAATGTAGACAC---------------------------
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>chr6B_1953
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--------------GTCGCCTCTGCCTGGATCCATCTCCTTGCCGTCGAACTTTTCGCCGCAACGTCTGTTGGCCATTTT
T---TCACTTTCAGGTGTATGTGTTTGTGGGGACTGATGAGGTAGATGTTCAT-TTT--------TT-TTGTTCTGCCTG
GCAATGCAGACAAGTGTACAATGAGGGCATCGAGACCAGGCAGAACGCCGCTCACA--GTTTTGCTGTGCCTGCTCTTTT
GCCCCATCAGGAACGCCGCTCACACACTCACTAAGGGACTGGTGGGTTCCACAGGTCGATATC----ACTAACGACCGAT
TGCGTGTAGGTAGGCCCCTGTTGTTTAGATGGCTCATATGGTGTGATTCAGATATAT--GAAT-AAAATTGACTTGGTGC
GCCATTTGTTCCATATAAAGTTCAGATAGATTATTTCCACCCGTTATATTGGAATTGGCCCAAGACACTGAATCTACTTG
CCATCATGGGTTCATAGAAGGT----TAGAACAAC--TAGTTTGTACTATCTAAGTCCTGTTACCAAGAAATGTACAACT
AATTTATATCAGTTCTCACACA-AACAGTGAC--AAAAACTGTAAATGAAACCA--------------------------
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-------------------------------------------------------------------AAAGAAGAAGAGA
G-AAAACTAAAAAAGTTGCTTTGCACTGCACTTGTGGATTAGCTATTATAGTTCAAGCAAATAGACT---AATA-GCGGG
T-----TTATATTACAACTTTACAACAATTGAATTTCTGAATGTTGTGCAAAGGTTTTGTGATCCTTATTA---CAGAAC
GCGTAAGCCTACTGAAGTGGTAACTGATC--AAACTGGCGTGGCATCGGAAGCTACAATACTT-------TCCAGCGAGT
A----TATATATACTTTTTGAAC-A----AGTATAGCTCTTTTACTGTACGTATAATGGCATATCATCTG---CTTTCTT
CTTGTCAGATACCTAGTTGAGTATCAGCGCCAGTCTGTCGCCGGCCTTTGCTAGTCTCTTCTCCACAACCGGGTACCAGG
TGAAGTAATAATCATCTGCATTTCAGAAGAGTTGC-CAACCGTTAGCAC------------TGTACTCTAGCTAGGCAAA
ATGCATACTGTCTATAGTTTA--TTTTTACAGTCCTGCTGTGAATGTAGACAC---------------------------
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>chr3A_2260
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----------------CCCGTGGTTTAGATGGCTTAGGTAGTGTGATT-AGATATAT--GAAAAAAAATTAATTTGGTGC
ACCATTTGTTCCATATATATTTCACATTGATTATTTCCACCCATTCTATTGGAATTGGCTCAGGAAACTGGATGCACCTG
CCACCAT-GGATCATAGAAGGT----TAGATCAGC--TGATTTGTACTATCTAAGTCCTGTTTCGAAGAAAGGTACAACT
AATTTATATCAGGTCACAAATA-AACAGCGACGCACAAA-TGTAAAGGAATGAAAGAAGTTGAGAGAAAATAAAACGTGG
CTTTGAACTTCACTTGTAGATTGGTTATTATTGTTCAAGCAAACAGTCTATTATAGACGGTTGAATTATATTACAACTTC
ACAACAATTGAATTTCATGTTCGTTAAAATTTCCGAATAAAATTTTAAATATTATAGAATTTTTTAGAAAGTAAGAATTA
TTTTTAAAATAATAATTGTTTTAGAAATTCACGATTTTTTTTTGAATGAACATTTTTTAGAATTCAGAAACAATTTCTGA
AATTCATGAACGTTTTTGAATCGGCAATGTTTTTTGAAATTTGCAAACATTTTTTAATCAACAAACTTTTTTTAAATTCA
TGAAAATTCTTGAATTGAAGAACTTCTTTTAGAATTCGTGAGCAATTATTGTGAATAGTTTTTTAATTCAGGAATATTTT
TTAAAATTCATGATTTTTTGAATTCATAAACAAGTTTAAATCATGGAAAGTTCATGAAATCCCAATTTTTTTTCAAATTG
TTGAAAGTTTTTTGAAATTGGAATAAAATTAAATTTGGTGCACCATTTGGCAAAAAATTAAATTAATTTGGAATTGAGAT
ATATGAATAAAATTAATTTGGTGCACCATTTGTTCCATATTGATTTCACATTTATTATTTCCACCCATTCTATTGGAATT
TGCTCAGGAAATTGAATGTACTCGCCACCATGGATCATAGAAGGCTAGATCAGCTGATTTGTACTATCTGAGTCCTGTTA
CGAAGAAATGCACAAGTAATTTATATCGGGTCACAGATAAACAGCGGCGCACAAACGTAAAGGAATGAAAGAAGTTGAGA
G-GAAAT--AAAACGTGGCTCTGAACTTCACTTGTGGATTGGCTATTATTGTTCAAGCAAATAGTCT---ATTATAGACG
GTTGAATTATATTACAACTTCACAACAATTGAATTTCTGAGTGCTGTGCCAAGGCTTTGTGACTCTTATTA---CAGAAT
G-GCAAACTTATTGAAGCGGTAATTTATGAGAAACTGGCGTGGCAACGGCAGCTACAATACCT-------TGCAGCCCC-
--GTATGTATACACTTCATGTACAA----AGTATAGCTCTTTTACTGTACGTATAACGGCATGGTATCTG---CTTTCTT
CTTGTCAAATATACGGTTGAGTATCAGCGCGAGTCTGACGCCGGCCTGTGCTAGTCTCTTCTCCACGACCGGGTAGCGGG
TGAAGTAATAATCATCTGCATTTCGGAAGAGTTGGGTAACCATCCATGCATTAGCGCTGCATGTACTCTAGCCAGGCAGA
ACTCA-----------------------CAAGCACTGCTGTGAATGTGGACACATAATCACGTACCTCCGAGGGTAATGT
TCTGCACCACATCCTTGTAGGCGTAGTTGCAGGACAAGTGTATGCTCTCGATCGCGTAGCTGCAACGTGGA--TTCGG--
---TGCCATACCATGTCAAATATTGTGATCAAATTAGTTGCACACAGGACATGAACT-GAAAGAAAGTGCAAGTGTTTGG
ATAT-GAATCCTACTCATTTGCGCAGGTCGCCCTTTTGTTGGCGCAGTTCTCCCAGT
>chr3D_2266
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----------------------GTTTCGATGGCTTAGATAGTCTGATTTAGATATAT--GAAT-AAAATTGATTTGGTGC
ACCATTTGTTCCATATAGATTTCACATTGATTATTTCCACCCATTCTATTGTAATTGGCTCAGGAAACTCGATGTACTCG
CTACCAT-GGATCATAGAAGGT----TAGATCAGC--TGATTTGTACTATCTAAGTCCTGTTTCGAAGAAATGTACAACT
AATTTATATCAGGTCACAGATA-AACAGCGACGCACAAA-TGTAAAGGAAC-----------------------------
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------------------------------------------------------------------GAAAGAAGTTGTGA
G-AAAAT--AAAACATGGCTTTGAACTTCACTTGTGGATTGGTTCTTATTGTTCAAGCAAATAGTCTG---TTATAGACG
GTTGAATTATATTACAACTTTACAACAATTGAATCTCTGAATGTTGTGCCAACGTTTTGTGACTCTTATTA---CAGAAT
A-GCAAACTTATTGAAGCGGTAATTGATCAAAAACTGGCGTGGCAACGGCAGCTACAATACCT-------TGCAGCCTGT
ATGTATGTATACACTTTTTGTAT-A------TATAGCTCTTTTACTGTACGTACAACGGCATGGTATCTG---CTTTCTT
CTTGTCGAATATACGGTTGAGTATCAGCGCCAGCCTGACGCCGGCCTGTGCTAGTCTCTTCTCCACGACCGGGTAGCGGG
TGAAGTAATAATCATCTGCATTTGAGAAGAGTTGGGCAACCGTTAGCGC------------TGTACTCTAGCCAGGCAGA
ATTCA-----------------------CAAGCACTGCTGTGAATGTAGACACATAATTACGTACCTCCTAGGGTAATGT
TCTGCACCACATCCTTGTATGCGTAGTTGCACGACAAGTGTATGCTCTCGATCGCGTAGCTGCACGGCGGA--TTCGATT
CGATGTCATACCGTGTCAGACTTTGTGATGAAAATCAGTAGCAGGACAATGAAA--T-GAAGAAATCTGCGAGTGTTGGG
ATAC-GAGTCCTACTCGTTTGCGCAGGTGGCCTTCTTATTGGCGCAGTTCTCCCAGT
>SNPs
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---------------------------------------S----------------------------------------
-----S--------------S-----------------------------------------------------------
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-S------------------------------------S------SSSSSS-----------------------------
-----------------------------------SSS---------------------------------SSSSSSSSS
---------------------------------------------------------------------------S----
--------S---------------S--------------------------------------------------S----
--SSSSSSSSSSSS--------S-------------------------S-------------S--SS----------SSS
S-S-----------------------------------S-SSSSSSSSSSSSSSSSSSSSSS--------S---------
---------------------------S-----S----------S---------------S-------------------
--------------------S------------SSSSSSSSSSSS-------------------------------SS--
S-------------------------------------------------------------------------------
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-------------------------------------------------------S------------------------
----------------SSSSSSSS--------------------------------------------------------
----------------------------------------------------------------------S---------
-------SS-----S--------------SSSS-S-S--------------------------SSS--------------
----S-SSSSSSSSSSSSS---------SS-----S---------------S------------------S---------
-S-----------------S-----------------------------------S------------------------
-----S---S----------------------------------------------------------------------
------------S------S--------------------S---S--S---S----------------------------
-----S------SS----------S-----------S----S-----------------------------S--------
--------------------------------------------------S-----------------------S-----
-----S---SS---S---S---S-SS------------------S---S--SS---------------------------
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----------------------------------------------S----------SS------------S--------
-------SSSSSSSSSSSSSSSSSSSS--SS------S--S--S-------------S----------------S-----
-------SS---S-SSSS---SS-S---------------S---------------------------------------
-------------------------------------------------------S--S------------S---S--S-
--S---------------------------SSS----------------------------SSSS---------------
---------------------------S----------------------------------------------------
----------------------------S--S--------S---------------------------------------
---S---------------------------S-------------S----------------------------------
-----------S--------------------S-----------------------------------------------
----------------------------------S------------S------------S-------------------
-----------------------------S------S-------------------------------------------
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-S--S--------S--------S--------------------------S------------------------------
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-----------------------S-------S------------------------------------------------
------------S--S---S-S--SSSSS----------S------------------------------SSS-------
------------------------------------------------------S-------------------------
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---S----------S----------S------------------------------------------------------
----------------------S--------S-SS----------------------------------------S----
----------------------------------S--------------------------------S------------
S---S----------------------------S---------S-------------
>forward_718
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----------------------------------------------------------TCTGTTGGAGATGACGGCTC--
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>reverse_2095
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--------------GCGGCCAGAGTAGACTCATG----------------------------------------------
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>forward_1888
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----------------------------CAGTTCCACTCTGGTAGCCC--------------------------------
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>reverse_4104
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-----------------------GTGATCGAACTGGCGTGTCA-------------------------------------
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