>input_sequence_56771
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------ATGG
CTGCGATACTAGGATCCGCGGTTGCAAGCGAGTCTGTAAGCAGAATTTTCTCGATCATATCAGGCAACTCGGGAGAGGAT
GGGGGTGCGGAGGACAACGCCGAGAGGCTGAAGTTCGCGGTGCTGAAGATCCACAGCGTTGTCGCCGTCTCCGAAGATTG
GCGCATACTTCACCAACCATTGCTCGACTGGAAGGCGAGGCTGAAGCGCGTGGCCAAGGAAGGCGATGGCATCCTGCGCG
CTCACACGAGGAGATCCGCGGAGCGCAAACGGGGCGATGGGGTTGCGAGGAAGGCTGTTCCCGTTCATAAGCGCGTCGCT
CGAGCGGCGACACGCTTCTTGCCCTTCCGCCGCGGCAAGGACGACGACGGCGATCCGAGCGATGCGACGGTGCGGAGGTT
CGAGAGGCTAGCGCGTGTCGCCGACGAGTTCTTCCGGTACGTCCAGCTTGGGGGCCGTCCGAAGAGCTTGACGGCGTCCA
TGGAAGTTCCTGCAGAGCCGCTGCTTGCAGGGAAGACGCTGGAGTTCTCCCTCCGGAGCGGCAGCCGGGACGCCCTCCTG
CTGCTCCATCCGTG------CAACAGGGAGATCGTTCTCTTCCTCTCCTGCGACGACAGCGCGGCGTGGGAGAGGAACGT
GAAGCTCTGCGTTGTCTTCCGACTGCTCGAGCACACTGACGTCTTGGACATCGTCATGTCTTCCTTGCAGCTGCTGCCTC
CCCAGTTCGGCGCCGCCTGTGCGACGGCAAGGGAGTTCGTCAGGGAGGCGCGGGCGCAGGAAACGAGCTATACCAGCGCG
TCGTCCATGTCGATGCGGTGCGTCTCGTCGGCATGGAGGTGTCACCGCAACTCCACGGACGGGGGATGCGCGGCGACCGA
CGGTATGCCGCGGCTGCCGTGGCCGATCGTTCGAGTCGACGCCGTGTACTTCGCCATGCCGCAGAACGATTCGCCGGATG
CGCCTGCGGACCAGAACAAGCTTCTGAAATTGGCATGCCATATCACTCCCCATCTTGTGCCCGAGACGTACTCCCGGCAC
TACCGGCAGATCGGGACGGAAACACTACAAGAGCTGTCCCCCAAGGTGGCGGACGAAGGAGCTTCCGCTTGTGGACGGAC
AGCTGCGTGGTGGTGTCCTCGCAGCTCAACGTATTTGTCGGCGGAACCAGAGGTTTCGGTGCCGCCGCCGACGCTGCAGC
AGTTGTTCCTGGTGCAAAGCTTGAAGGGGGCAATGTAG------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr7D_1_TraesCS7D01G451200
TTCGCAGACGTGGCAAACCAGTCTGCATAAAAAACTCAAGTTTATAAAAAAAAATCAAGCTAAATATGAAAATTTGGACA
TATCTTTACAAAATCAGAACAATAATGATAACTTAGGGTAAATATTGAAACATAAATAGATCTTAAGTGTTCCCTGAGAC
AGAGAAACTTTTCTAAGTAATGTTTCGTGAAACAAAAAAATATAGATTTTCTAAAAAAAGGTAAATAAGAAATATAAATA
AAGATTACTATTTTTAGAAAGAAATCAAAACAATCTAGACAGATCGTAAGTTTTACATGAGATAGTGAGAAAAATCTCCA
AAATTAATTTTGAAGTCCAGTTAAATATATAAATATTGTTAATGCTTGAAATATGGATGGCATCCATGAAAAGAAATTGG
GGGAAAACTAAATGCATAAAATTCAACATGATAATGAACGAAGGCATAAGAATACAACAAGCTCAAGTCAAAAAAATTAT
ATTTTAAGCACACATAATAAACATTTTTTAATTTGCATTGTACATTTTCTTTTTTCCCCCTAATTTTGAACAGTCATATT
GTTTTTCTTCATGATGATAATTATTTTATACTTTAATTTTTTTTGGCGAAATTTTTTGTACTTTATTTATTTCTCTGTAA
CTGACCAGTTGCTTGTATATGTCCTAATTTCTCCTTTTTCTTGAATTATCCTTTTATGATAACTCAACCACATGTTTACC
TAATTTATTCTCCTGTCAACTTTCTAACAAATTTTTAGTTTTCCATTTTCTTGGTTTGTTTTGTGCTCGGCATT------
---------------------------ATTGTCTAAGGAAGACGCCTTGAACGA-TAATCGATGTCATTTTCAATTCTCG
AGGGTCGCATTTTTGTCC-ATCAGAACAGTGACGTGAAGACTTTCAGGTAAACAATTTTTATGGTTTACCAGTCCAACAC
GCCGAACAATTTTCTCAAGGGAAAAAGAAGTGCCATCACTAAGTGTAGGAGCTCTGATTTACCAGAGGAAGTCC-CATGG
CTGCGATACTAGGATCCGCGGTTGCAAGCGAGTCTGTAAGCAGAATTTTCTCGATCATATCAGGCAACTCGGGAGAGGAT
GGGGGTGCGGAGGACAACGCCGAGAGGCTGAAGTTCGCGGTGCTGAAGATCCACAGCGTTGTCGCCGTCTCCGAAGATTG
GCGCATACTTCACCAACCATTGCTCGACTGGAAGGCGAGGCTGAAGCGCGTGGCCAAGGAAGGCGATGGCATCCTGCGCG
CTCACACGAGGAGATCCGCGGAGCGCAAACGGGGCGATGGGGTTGCGAGGAAGGCTGTTCCCGTTCATAAGCGCGTCGCT
CGAGCGGCGACACGCTTCTTGCCCTTCCGCCGCGGCAAGGACGACGACGGCGATCCGAGCGATGCGACGGTGCGGAGGTT
CGAGAGGCTAGCGCGTGTCGCCGACGAGTTCTTCCGGTACGTCCAGCTTGGGGGCCGTCCGAAGAGCTTGACGGCGTCCA
TGGAAGTTCCTGCAGAGCCGCTGCTTGCAGGGAAGACGCTGGAGTTCTCCCTCCGGAGCGGCAGCCGGGACGCCCTCCTG
CTGCTCCATCCGTG------CAACAGGGAGATCGTTCTCTTCCTCTCCTGCGACGACAGCGCGGCGTGGGAGAGGAACGT
GAAGCTCTGCGTTGTCTTCCGACTGCTCGAGCACACTGACGTCTTGGACATCGTCATGTCTTCCTTGCAGCTGCTGCCTC
CCCAGTTCGGCGCCGCCTGTGCGACGGCAAGGGAGTTCGTCAGGGAGGCGCGGGCGCAGGAAACGAGCTATACCAGCGCG
TCGTCCATGTCGATGCGGTGCGTCTCGTCGGCATGGAGGTGTCACCGCAACTCCACGGACGGGGGATGCGCGGCGACCGA
CGGTATGCCGCGGCTGCCGTGGCCGATCGTTCGAGTCGACGCCGTGTACTTCGCCATGCCGCAGAACGATTCGCCGGATG
CGCCTGCGGACCAGAACAAGCTTCTGAAATTGGCATGCCATATCACTCCCCATCTTGTGCCCGAGACGTACTCCCGGCAC
TACCGGCAGATCGGGACGGAAACACTACAAGAGCTGTCCCCCAAGGTGGCGGACGAAGGAGCTTCCGCTTGTGGACGGAC
AGCTGCGTGGTGGTGTCCTCGCAGCTCAACGTATTTGTCGGCGGAACCAGAGGTTTCGGTGCCGCCGCCGACGCTGCAGC
AGTTGTTCCTGGTGCAAAGCTTGAAGGGGGCAATGTAGTTCTTCTTGGCTTCTCGCAGTAGTAGCAGAAGCGATGCAAAC
TTTCACTTTTATTAAGCAATAAGGGGGCAATGTAGATCATGGCTAAGTGACATCTTGTAATTTCCTCACTTTCTTGTTTT
CTTCTTCTTTTTGGCTTATCTCACGCCTTGGTGTCATACTCTGCTTTATGTTATAAAAAATATTCCAGGTTTTGCTAAAA
AAAGGTTATATAAAACTAGCAGGGTCACAAGCACATTTGCGTGGCTAGATTTTATTATTATTTATTATTATTGCCTCTAC
TCTATATATATATATATATATATATATATATAGTTCCTTTAAAAGGTTGGTAATGAAGTTCTTTCCCACATTCTAGATTC
TACGGACTAAGCTCATCCTCCTAGTGGAGAAGTTGATATATCTTTTTCTTTCACTTCTCCATTGACCAGGTTGTGTCCCA
AGAGAGATACCCAATTTGTTTTGTGTTTGTTTCTCTTCACCACTGCACTCCCCATCCAAAATCCCTTAGAGCTTGTTTGA
TTAATTCACTAAAACAACTTGTTTGATTAAAAGAATGAGCCGCACATTTGCGCGCTAGATTTTCTATACATGGTTGTACG
CACTATTATTTTTCTCTTGAATTATTTGCTCTCGTTGTCAATTATTATTTCATTTCACTCACCACTACAGTGTTATACAA
TGTTATTTTTTATTCATAATAAAATATATTATTTTAAATATAATTGTCATCAAAAATATTATTTGATTTTTCTTTAATTA
TATTAAATTGGTGGTGAAGCCACGCTAACTAGCCGCACTTGAAGATTATTTATCTCATTCACTTTTGTCGTCGCTTGCTT
TTTTCATTCTGGCTGCATCACTGTATTTCATGTACCTAAAACTCGTTTGTTTTTGTAAGTAACACACCCATGCATCTTGA
TACAACTGATTCATGTTACATTGGCATTGGAACTCAATCAATACAACTTCTAATTACATTCTTACATGAAAATCAAAT
>chr7A_611
ATTATT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TTGTACTTTATTCATTTCATTGTAA
CTAACCAACCGTTTTTATATTTCCTAATTTTTCCTTTT-CTTGAATTATCCTTTTATGATAACTCAACCACATGTTTACC
TTATTTACTCTCCTCTCAACTTCCCAACAAAATTC-AGCTTTCTATTTTCTTGATTTGTTCTGTGCTCGGCTGGGTTGAC
ACGTGTGGAAAACATCATGTTAACTTCATTGTCCAAGGAAGACGCCTTGAACGAATAATCGATGCCATTTTTACTTTTCC
GGGGTCGCATTATTCTCCAATCAGTACAGTGACGTGAAGACTTTCAGATAAATCCTTTTCATGGATTACCAGTCCAACAC
GCTGAGCAATTTCTCACGGGAAGAAAGAAGTTCCATCACCAAAAGTAGGAGCTCTGATCTACCAGAGGAAGCCCTCATGG
CTGAGATATTAGGATCCGCGGTTGCGAGCGAGTCCGTGAGCAGAATTTTCTCGATCCTATCAGGCAACTCGAGAGAGGAT
GGGGGTGCGGAGGACAACGCCGAGAGGCTGGAGTTCGCGGTGCTGAAGATCCACAGCGTTGTGGCCGTCGCCGAAGACTG
GCGCATACTCCACCAACCATTGCTGGACTGGAAGGCGAGGCTGAAGCGCGTAGCCGAGGAAGGCGATGGCATCCTGCGCG
CTCACAGGAGGAGGTCTGCGGAGCGCGAACGGGACGAGGGGGTTGCGAGGAAGGCTGTTCCCGTTCACAAGCGCGTCACT
CGGGCAGCGGCACGCTTCTTGCCTTTCCGCCGCGGCAAGGACGACGACGGTGATCCGGGCGAGGCGACGGTGCGGAGGTT
CGAGAGGCTAGCGCATGTCGCCGATGAGTTCTTCCGTTACGTCCAGCTTGGGGGCCGCCCGAAGAGCTTGACGGTGTCCA
TGGAAGTTCCTGCGGAGCCTCTGCTTGCAGGGAAGACGCTCGAGTTCTCCCTCAGGAACGGCAGCCGGGACGCCCTCCTG
CTGCTCCACCCGTGCGACGGCAACGGGGAGGTCGTTCTGTTCCTCTCCTGCGACGACAGCGCGGCGTGGGAGAAGAACGT
GAAGCTCTGCGTGGTGTTCCAGCTACTCGAGCGTACCGACATCTTGGATATCGTCATGTCTTCCTTGCAGCTGCTGCCTC
CCCAGTTCGGCGCCGCCTGTGCGACGGCGAGGGAGTTCGTCAGGGAGGCGCGAGCGCAGGAAACGAGCTATGCCGGCGCG
TCGTCCATGTCGATGCGGTGCGTCTCATCGGCGTGGAGGTGTCACCGCAATTCCACGGACGGGGGATGCGCGGCGACCGA
CGGCATGCCGCGGCTGCCGTGGCCGATCGTTCGAGTCGACGCCGTGTACTTCGCCATGCCGCAGAACTATTCGCCGGATG
CGCCTGCGGACCAGAACAAGCTTCTGAAATTGGCATGTCATATCACTCCCCATCTTGTGCCCGAGACGTACTCCCGGCAC
TACCGGCAGATTGGGACGGAAACACTGCAAGAGCTGTCACCCGAAGTGGCCGACGAAGGAGCTTCAGCTTGCGGACGGGA
GGCGGCGTGGTGGTGTCCTCGCAGCTCAACGTTTTTGTCGGTGGAACCAGAGTTTTCGGTGCCGCCGCCGACGCTGCAGC
AGTTGTTCCTGGTGCAAAGCTTGAAGGGGGCAATGTAGTTCT---TGGCTTCTCGCACTAGTAGCAGAAGCGATGCAATT
TTTCAGTTTTA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-----SS-----
--S----SSS-S--S-----S---------S-------S-----------------------------------------
-S-----S------S-------S-S------S--SS--S----S---------S------S----------SSS------
---------------------------------S------------------------------S------S-S--S--S
S----------S--S---------S----------------------S----SSS----S----S---------------
--S--S------SSSSSS--S-S--------S-------S--SS--------------S------------S--------
---S----S----------------S--------S--S------------------S--------------S--------
------------------------------S-------------------------------S------S-------S--
---------S--------------S--------------------------S---S------------------------
------S------S--S---------S------S---S-----------------------------S---------S--
--S--S---S-------------S--------------------------S------S----S-----------------
--------------S---------S-----------S--------------------S----------------S-----
-------------S-----S--------------------S------------S---S----------------------
--------S---------------S-----S-------S----------------------------------S------
------------S--S----SS--S-------SS--S---S-------S-------------------------------
----------------------------S-----------------------S------------------S--S-----
--------------------------S-----S-----------------S-----------------------------
---S---------------------------------------------------------------S------------
-------------------------------------S------------------------------------------
-----------S--------------S-----------S---S-S-----S--------------S-----S------SS
S--S----------------------------S--------S----------S---------------------------
------------------------------------------SSS------------S--------------------SS
-----S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_792
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GGTTTGTTTTGTGCTCGGCA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>reverse_2496
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------CTAGCAGGGTCACAAGCACA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
