>input_sequence_56723
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----------------------------------CAGACCGGACCCTCCGAGCAGACAGCATAGGAAGCGAGAAGACAGA
GACGGGAGCCTCGC------CGCCGACGCCGACGGGCAAGATGCAGCGCGCGTCCCTTGCGTCCGCTCTGCTG-------
-----CTCTGCTCCTTCTTCGCGCAGCCGTCGCAGGCGCTCCTCGACGGCACGCGCGGCGCCGGGGCGTACATTTCTCGG
GTGAGCTCACGGCTTCGCTTCAAGTGCTTTGCTAGTGCCTACTGGTAGTGTTCGTCGGTGGTGGCGGTTTCCGTGCTCTA
ACATTTTCTTGCTTCTTGTGGTTCGATTAACTAGCTGCTCGGCGAGGGCTACGGCGACGAGAAGGTCCCCATGGCCGTCG
TGGTGCCGTCGGTGCCAGATTACTCCCCGCTGCCGGCACCGACCGCTGTCGCTGTCGCCGCGCCCGCGCCTGCGCCCACG
CCAACGCCGACGCCGACGCCGGTGCCCGGCTCGGAGGACTACATGCCGAAGCTGCCGTCTGACAGGCTGAGCCCTGGGGC
GCCGGCCAACGGCAATGCGGGCTCGCCCGCGCCTGCCGCGTCGGGCGACGGGGCGAGCACCGCCTTCATCAGCAGCAACC
CCGCGGTGCCGCTCCCCGCCGGCGTCACCGACTCCGCCACCGTCCTGCCCATGCCCACCCCTGGACAAGAACAACGGCAG
GTAGGAGTAACCGCCACTACCAATCAGCCACCACTAATGCCTGAAGCTCTCGATTTCTTTAGCTCGTAGCTTTGCTCAAG
-------------CTTGCTTTCCCCGTGCCTCCGCATCGATTGAGCTTTGTTCACCTTGCTCTGACTTCTTTTGGTTCCG
CGCTTTCACAGGACATGGGGATGGGCACCCTGCTTCAGGCCAGCGCGGTGCCGCTGGTCGCTCCTCTCCTCATGGTGCTG
TACTTTTGAGCTTTCTTGTTGGGGTAGTAGAGCAGTACGTAGTTCCTTTCTCT-----TAGGACTGATGCATCGAGTGAT
TAGTTGTCAGCATCTGCGCTTGTAATCAGCACACCGCGGTGCTTTCGTC---------TAGGCTGTTGTATGCTCTAATC
ATCTGTATACAGTATCACCTCTGCT-----------TCTTGTCTCTTGTCACACATGTATCCTGTGTACGAGT-AAGTCT
CATGCA-----TTGCAATTCTTACATGGAGCATTGCCTACGGAGAAAATTTGTATCATTCGGATAGGATACGTTCACGAC
AGTGGGACAGGGTCAATATGTCCAATGAGTGTAAATAGACAGCATCTAACAAT---------------------------
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>chr2A_1_TraesCS2A01G300700
AATAAAAAAAAGACATTAAAAAAAAATTGATGATAAACTTTGACAAGTGTTTTCAATACTCGTTTTCGTCATGAAATCAC
ATTCGTGGAGTAAAGTTATTTTTTGGAGTGCTGACTTTGTTTTCTGTTTTGCCACGACTTTCACAAATGTTTTTTTCTAT
CATTCTATGATGAAACTTTACAAACAAATTAAACATTTATCAATTTTTGCCATGGAAAAATTCTAAAAAAATCTCAATTC
TTTAGAATTTTACTGTTCACCTGAGCACATATGAGGTCGAGCTCATTTAATCCGCGTCCTGGTACTCTACCTATTTGATC
GAAAGAGGGAAAATATCAAGTCTCACTTGAATTATTTGTAAGCCGAGGAGCCCTGTATTCTGTACAAGTGTACAGTGAGG
AGCCAGGAAACGGCCGGGCTGAGATTTGACCGCATGGATCGAGCAACTC----------------CAAAGCTTGGACCGC
GCAGCGCAGTATTGGAACTCACGTGCACCGGCAACCGCGCCGGCCT-----TTGATGCTGCCATTATCGGGCCCAAAAGC
ACCTCGGCCTCCGCCCAAAAGCTCGACAGGACTCCGCGCCCGGAACCAACACCGCGTTCCTCCATTCCATCGTGCTGCTC
GCGATGAGTCTCCCGACCC--------ACACACACACTGACACACAGAGGAAGAATGCACGTCCTAGCGCGAGCAATCTG
CTGGTAATCACCGGCGGCCGACCGCACGTCCTTTGTGGCCTCGCCGTCACCACGCACGCCCAACCCAAAGTCCCCAAAGG
TGGCCGCTTTACCGCAGCCTTTCGACCACGACTAGCTGCTAGCCCGTACCAGGAGTAGCAGACTACCACCACCACCACCA
CCACCACCCCTGTTGTGTTTCCTTTGGCAGTTTTGCATCGCTTTTCACCGTGCACCGCCCCGCACTGACCTGCAGGCTAG
GGAGAGCAT-----------------------------AGACCCCACCCAAGGACCACGCACGTCTTACAAGGTCATG--
-------------GCCTCGAGCCAA-ACCCAAACCAGACCGGACCCTCCGAGCAGACAGCATAGGAAGCGAGAAGACAGA
GACGGGAGCCTCGC------CGCCGACGCCGACGGGCAAGATGCAGCGCGCGTCCCTTGCGTCCGCTCTGCTG-------
-----CTCTGCTCCTTCTTCGCGCAGCCGTCGCAGGCGCTCCTCGACGGCACGCGCGGCGCCGGGGCGTACATTTCTCGG
GTGAGCTCACGGCTTCGCTTCAAGTGCTTTGCTAGTGCCTACTGGTAGTGTTCGTCGGTGGTGGCGGTTTCCGTGCTCTA
ACATTTTCTTGCTTCTTGTGGTTCGATTAACTAGCTGCTCGGCGAGGGCTACGGCGACGAGAAGGTCCCCATGGCCGTCG
TGGTGCCGTCGGTGCCAGATTACTCCCCGCTGCCGGCACCGACCGCTGTCGCTGTCGCCGCGCCCGCGCCTGCGCCCACG
CCAACGCCGACGCCGACGCCGGTGCCCGGCTCGGAGGACTACATGCCGAAGCTGCCGTCTGACAGGCTGAGCCCTGGGGC
GCCGGCCAACGGCAATGCGGGCTCGCCCGCGCCTGCCGCGTCGGGCGACGGGGCGAGCACCGCCTTCATCAGCAGCAACC
CCGCGGTGCCGCTCCCCGCCGGCGTCACCGACTCCGCCACCGTCCTGCCCATGCCCACCCCTGGACAAGAACAACGGCAG
GTAGGAGTAACCGCCACTACCAATCAGCCACCACTAATGCCTGAAGCTCTCGATTTCTTTAGCTCGTAGCTTTGCTCAAG
-------------CTTGCTTTCCCCGTGCCTCCGCATCGATTGAGCTTTGTTCACCTTGCTCTGACTTCTTTTGGTTCCG
CGCTTTCACAGGACATGGGGATGGGCACCCTGCTTCAGGCCAGCGCGGTGCCGCTGGTCGCTCCTCTCCTCATGGTGCTG
TACTTTTGAGCTTTCTTGTTGGGGTAGTAGAGCAGTACGTAGTTCCTTTCTCT-----TAGGACTGATGCATCGAGTGAT
TAGTTGTCAGCATCTGCGCTTGTAATCAGCACACCGCGGTGCTTTCGTC---------TAGGCTGTTGTATGCTCTAATC
ATCTGTATACAGTATCACCTCTGCT-----------TCTTGTCTCTTGTCACACATGTATCCTGTGTACGAGT-AAGTCT
CATGCA-----TTGCAATTCTTACATGGAGCATTGCCTACGGAGAAAATTTGTATCATTCGGATAGGATACGTTCACGAC
AGTGGGACAGGGTCAATATGTCCAATGAGTGTAAATAGACAGCATCTAACAATTAATTTTTCATCAACACACAATACTTG
CATATCTTTTAGGATGTGCTAGCCAAGTTTTTCCAAAAATCTGAACTGATGAAAAGGACTAGCAATGTATTTTAATAACA
AAGAAGGAAACTGTTGAGTATAATTTTAATAACAAAGAAGGAAACTGTTGAGTATAATGATTATGTAGAAAACATAGGAT
ATCATAAGATTTATTCTACCTTGCCTTGTACTTCAAGATGACCATGTACTCCTATATATATATATATATATATGTGTCTA
GGGGCTCAAGCAATACAATGAACTATTTCATCAATCCCTCTCTCTTCCTTCTAACATGGTATCAGCCTAATCTCGATCCA
AACTCCAGCCGCCGCCGCTTCAGCACCGCGCAGCCCCTGGGGCGGTTGATTTCCATGATCGTCACCGGGGGCTGCGCCGT
CCATACCTAGGATTCGTCCGCCGATCGTGTTGATCGGCTGTCGTAGAGAGTCTTTTTTCAGGTCGTTTGACTCGGATTTT
TCTCTTGTTTTGATCGGCGTTTCTTTTTTGGTCCTTTGACCCGGATTATTCTTTCACATCGATTGTTTTGATCGGCGTTT
TTTTTTTGATTTTTCGATTTATGATTGGTTTATGTCGCCCATCGCCTGTTGACTCTTCTCGTGCCTCTACTTCTACATCG
GAATCGACTACATTTGCACGTCGTCATCCGCCTGGTCTTCGCGCAGGCCTGCATCTAGCTGGATTAGTTGCCGCACCCGC
CCCACGCTGAAGACGTGTTCCTGCGCTGGTGTGGCGGCCACTCGTACGGTTCGCTGGCCGTTGTCCGGCGGCGAGTGTCC
CGAGCTCAGGCCACACACGCGCCAGACGCGGACGTGGATGGCTGCACGCGCGTCGACGCGGGCGGCCGCTCGCGTTGGGC
CACCAGGTCAAGCCGATGCACCACATATGGTGTCTTGGCTGATCAGTGATCGCGTTTGCGTCTCATGCGGGTGTTTGTGC
TCACATACCTATT
>chr2D_311
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----------------------------------------------------------------------CTATTTGATC
GAAAGAGGGAAAAGATCAACTCTCACTTTAATTATTTGTAAGCCGAGGAACCCTGAATACTGTACAAGTGTA--------
---CAGGAAACAACCGGTCTGAGATTTGACCGCATGGACCGATCAGTCATAAATATGGAGCAACTCCAAGCTTGGACCGC
ACACCGCAGTATTGGAACTCACGTGCACCGGCAACCGTGCCGTGCCGGCCATTGATGCTGCCATTATCGGGCCCAAAAGC
ACCTCGGCCTCCGCCCAAAAGCTCGACAGGACTCCGCGCCCGGAACCAACACCGCATTGCTCCATTCCATCGTGCTGCTC
GCGACTAGTCTCCCGACC----------CACACACACTGACACACAGAGGAAGAAAATGCTGCCAAGCGCGAGCAATCTG
CTGGTAATCAGGCGCGTCC-------------TTGTGGCCTCGCCGTCACCACGCACGCCCAACCCAAAGTCTCCAAAGG
TGGCCGCTTTACCGCAGCCTTTTGAGCACGACTAGCTGCTAGCCCGTACTAGGAGTAGCAGACTACCAGCACCACCACCA
CCACCACCCCTGTCGTGTTTCCTTTGGCAGTTTTGCATCGCTTTTCACCGTGCACCGCCCCGCACTGACCTGCAGGCTAG
GGAGAGCAGTGAGCCAGTGACCGTTGCACCCCACAGGCAGACCCCACCCGAGGACCACGCACGTCCTACAAGGTCATGGC
CGCACCGCACACGGCCTCGAGCC-A-ACCCAAAGCAGACCGGACCGTCTGAACAGACAGCATAAGAAGCGAGAAGGCAGA
GACGGGAGCCTCGC------CGCCGACG------GGCAAGATGCAGCGCGCGTCGCTCGCGTCCGCCTTGCTGCTGCTCT
GCTCCCTCTGTTCCTTCTTCGCGCAGCCGTCGCAGGCGTTCCTCGACGGCACGCGCGGCGCAGGGGCGTGCATTTCTCGG
GTGAGCTCACGGTTTCACTTCGAGTGCTATGCTAGC-------GGTGGTGTTCGTCGGTGGCTGCGGTTTCCGTTCTCTA
ACGTCTTCTTGTTTCTTGTGGTTCGATTAACTAGCTGCTTGGCGAGGGCTTCGGCGACGAGAAGATCCCCATGGCCGTCG
TGGTGCCGTCGGTGCCAGATTACTCCCCGCTGCCGGCACCGACCGCTGTCGCGGTCGCCGCGCCTGCGCCTGCGCCCACG
CCCACGCCAACGCCAACGCCGGTGCCCGGCTCGGAGGAGTACATGCCGAAGCTGCCGTCGGAGAGGCTGAGCCCTGGGGC
GCCGGCCAGCGGCAATGCGGGCGCGCCGGCGCCTGCCGCGTCGGGCGATGGGGCGAGCACCGCATTCATCAGCAGCAACC
CCGCGGTGCCGCTCCCCGCCGGCGTCACCGACTCCGCCACCGTCCTGCCCATGCCCACCCCTGGACAAGAGCAACGGCAG
GTACT----ACTACTAGTACTAATCAGCAACTAGTAATTTCTGAAGCTCTCGATTTCTTTAGTTCGTAGCTTTGCTCAAG
ACTTTATGCAT-GCTTGCTTTCCCCGTGCCTCCGCGTCTATTGAGCTTTGTTCACCTTGCTCTGACTTCTTTTGGTTCCA
CGCTTCCGCAGGACGTGGGGATGGGCACCCTGCTTCAGGCTAGGGCGGTGCCGTTGGTCGCTCCTCTCCTCATGGTGCTC
TACTTTTGAG-TTTCTTGTTGGGGTAGTAGACTA----GT---TCCTTTCTCTTACTGTATAAT-----CATCGTGCGAT
TAGTTGTCAGAATCTGCGCTTGTAATCAG--CACCGTAGTGCTTTCGTTATCATCTAGTAGGCGATTGTAAGCTCTAACC
ATCTGTAAACAGTGTCACCTCTGCTTACTGCATGCTTCTTGTCTCTTGTTACACCTGTATCCTGCGTACGAGT-AAGTCT
GCATTGCAAATTTGCAATTCTT----------------------------------------------------------
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>chr2B_360
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---------------------------------------AAGCCGAGGAGCCCTGAATTCTGTACAAGTGAGGGTGAGC-
AGCCAGGAAACGGCCGGGCTCAGATTTGACCGCATGGACCGACGAGTCATAAATATGGAGCAACTCCAAGCTTGGACCGC
GCACCGCAGTATTGGAACTCACGTGCACCGGCAACCGTGCCATGCCGGCCATTGATGCTGCCATTATCGGGCCCAAAAGC
ACCTCGGCCTCCGCCCAAAAGCTCGACAGGGCTCCGCGCCCGGAACCAACACCGCATTGCTCCATTCCATCGTGCTGCTC
GCGATGAGTCTCCCGACCCACACACACACACACACACTGACACGCAGAGGAAGAATGCGCGTCCTAGCGCGAGCAATCTG
CTGGTAATCAGGCGCGTCC-------------TTGTGGCCTCGTCGTCACCACGCACGCCCAACCCAAAGCCTCCAAAGG
TGGCCGCTTTGCCGCAGCCTTTTGAGCACGACCAGCTGCTAGCCCGTACTAGGAGTAGCAGACTA-----ACCACCACCA
CCACCACC--------GTTTCCTTTCGCAGTTTTGCATCGCTTTTTACCATGCACCGCCCCGCACTGACCTGCGGGCTAG
GGAGAGCA--------GTGACCGTTGCACCCCAC----AGACCCCACCCAAGGACCACGCACGTCCTACAAGGTCATGGC
CGCACCGCACACGGCCTCGAGCC-ACACTCAAACCAGACAGGACCGTCTGAGCAGACAACATAGGAAGTGAGAAAGGTGA
GACGGGAGGCTCGCTGCCGACGCCGACG------GGCAAGATGCAGCGCGCGTCCGCT------------CTGCTGCTCT
GCTCCCTCTGTTGCCTCTTCGCGCGGCCGTCGCAGGCGTTCCTCGACGGCACGCGCGGCGCCGGGGCGTACATTTCTCGG
GTGAGTTCACGGTTTCACTTCGAGTGCTATGCTAGT-------GGTGTTGTTCGTCGGTGGTGGCGGTTTCCGTGCTCTA
ACATTTCTTGTGC---------TCGATTAACTAGCTGCTTAGCGAGGGATACGGCGAGGAGAAGATCCCCATGGCCGTCG
TGGTGCCGTCGGTGCCAGATTACTCCCCGCGGCCGGCACCGACCACTGTCGCTGTCGCCGCGCCCGCGCCCG------CG
CCAACGCCAACGCCAACGCCGGTGCCCGGCTCGGAGGAGTACATGCCGAAGCTGCCGTCGGACAGGCTGAGCCCTGGGGC
GCCAGCCAGCGGCAATGCGGGCGCACCGGCACCTGCCGCGTCGGGCGAGGAGGCGAGCACCGCCTTCATCAGCAGCAACC
CCGTGGTGCCGCTCCCCGCCGGCGTCACCGACTCCGCAACCGTCCTGCCCATGCCCACCCCCGGTCAAGAGCAGCGGCAG
GTA------ACCACTAGTACCAATCAGCAACTACT--TGCCTGCAGCTCTCGATTTCTTT-------------GCTCAAG
GCTTTATCACAAGCTCGCTTTCCCCGTGCCTCCGCATCTATTGAGCTTTGTTGACCTTGCTCTGACTTCTTTTGGTTCCA
CGCTTTCGCAGGACGTGGGGATGGGCACCCTGCTTCAGGCCAGGGCGGTGCCGTTGGTCGCTCCTCTCCTCATGGTGCTC
TACTTTTGAG-TTTCTTGTTGGGGTACTAGACTA----GTAGTTCCTTTCTCT-----TATAAT-----CATCGAGTGAT
TAGTTGTCAGAATATGCGCTTGTAATCAG--CACCGTAGTGCTTTCGTTATCATCTAGTAGGCCGTTGTAAGCTCTAACC
ATCTGTAAACAGTGTCACCTCTGCTCACTGCATGCTTCTTGTCTCTTGTTACAC--------TGCGTACGAGTGAAGTCT
TAGGCA-----TTGCAA---------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
-------------S-----S--------S--------------------------S----------------SSSSSSSS
--------------------------------------S---S--SSSS-----------------S-------------
---S---------------------------------S----SS-S----------------------------------
-------------------------------------------------------S--S---------------------
----------------------------------------------------------S---------------------
----------SSS---S--SSSSSSSSSSSSS----------------------------------------S-------
----------------------S--S-----------------------S------------------S-----------
-------------S------------------------------------------------------------------
--------S--------------------------------------------------------S--------------
-----------------------S---------------------S--S--------------------------S----
----------------------------SSSSSS--------------------------------SS------------
----------S---------------------------S-----------------------------------------
------------S---S----S------S-------SSSSSSS---S---------------------------------
-----------S---------------------------S------------------------S---------------
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--------S-----S-----------------------S--------------------S--------------------
--------S-------------S----S--------------------S-------------------------------
----------------------------------------------------------------------S---------
---SSSSSS---S-S-S-----------S--S------------------------------S-----------------
--------------------------------------S----------------------------------------S
-------S------S----------------------------S---------S-------------------------S
----------S--------------------SS-SSSS----------------------SS-SSSSSS-----------
----------S------------------SS-----SS----------S--------------S------S-------S-
-------S-----S-----------------------------------S----S---------S---------------
S-S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_309
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-------------------------------------------------ATCCGCGTCCTGGTACTCTA-----------
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>reverse_2118
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-------------------------------------GGTGCTTTCGTCTAGGCTGT-----------------------
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>forward_1928
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--------------------------------------------------------------------CTTTTGGTTCCG
CGCTTTCA------------------------------------------------------------------------
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>reverse_2998
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-------------------------------------CCCATCGCCTGTTGACTCTT-----------------------
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