>input_sequence_56700
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----------------------------------------ATGGGCTACGCCCGCAAAGTGTTCGACGGAATCCCCCACC
TGGACCTCTTCATGCACAACGTCATGGTCCGCGGCTACGCACACGGCGGCGCGCCGGCCGCGGCCTTCGTTTTGTACCGA
CGCATCGGGGCGGCGAGCCTGAGGCCCGACGCCTTCACGTTCTGCTACCTCCTCCGGGCCAGCGCTGGCTTGCCGGGTTC
CTGCGCCGGGTACCAGGTCCACGGCGTCGTCCTGAAGCTGGGCTTCTTGAGTGACGCGTTCGTGAGGAATGCGGTCATCA
ACATGCACGCCAAGTGCGGGGATTTGCAGGTGGCCGGCGCGCTTCTTGATGAGGCCGGCGAGGGGGATGTCGTGGCGTGG
TCGGCTGTCATAGCGGGGCATGCCGCTAGAGGTGACTTGGGCATTGCACGCCAACTGTTTGATGATTGTCGGCACAAAGA
CTTGGTGTGTTGGAATGTGATGGTGGCAGCGTATGCTAAGCATGGGGAGATGGAGAAGGCGAGGGAGCTGATTGACCGTG
CGCCAGAGACAGATGTGGTTTCGTGGAACACGATTATCACTGGGTACGCCGCGAAGGGGATGCTGAAGGAAGCACTGGAT
GTGCTTGATGAAATGAAGTGTGCTGGCTGGATGCCTGATGAGGCCACTATTGTTAGCTTGCTTTCCTGTTGTGCGAACTT
AGGGTCGCTTGACACAGGGAGGATGATACATTCATTACACTTGGAAGGTAGACCATGTACAAGTATTGTTCTTGGAAATG
CATTGGTATCAATGTATGCAAAGTGCGGAGATCTGCAGGCTGCATTGGAAGTCTTTAGCAGGACGAAGGAGAGGGATGTT
TGGACATGGAACTCGATCATCGGCGGGCTGGCCTTCCATGGGCAAGCAGAACAGTCCATCCACTTCTTCAATAAAATGCT
TCAAGAAGGAATGTGCCCAAATGCTATTTCTTTCCTCTGTGTTCTCGGTGCATGCAGTCATGCCGGATTAGTTGAAGATG
GTCAGAGATATTTCTCTTTGATGAAAGACAGGTACAAGATCGAGCAAAATGCAAAGCACTACAGTTGCATAGTGGATATG
CTTGGCCGTGCAGGCTTACTGGATGAAGCATTTGCAATTCTGAGCAGCATGAGGTGTGAACCTAGTGCAGTCATATGGAG
GACTCTGCTTGGTGCCTGCAAGA-CCACGGGAATGCAGCC-TTGGCAAACTTGCCAGGGAGAGGCTTCTAAAAATGAATG
A-------------------------------------------------------------------------------
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>chr7A_1_TraesCS7A01G189400
AGCACTTAGCTCAAGCACAGGCAAGAATGAAAAAGTATGCCAACAAGAAACGACTCGAAAGAACCTTTGAGGTCGGAGAC
ATGGTATATTTGCGAATGCAGCCCTATCAGATGGCAGCATTTGGTCTGAGGCAGTCCATGAAACTGACAACAAAATACTA
CGGACCTTACAGAATTCTACAAAAGATTGGCCATGTCGCGTACAAACTACAACTCCCAGACCACATTGGCATACACCCGG
TGTTTCATGTAAGCCAGCTAATGAAGCACTTGGGGACGCATGCTATTCCCAGCAAAGAACTGCCTCTGGTGGACAGCCAC
GGCAGGATCAAAACAGAGCCGCTGGCTGTGCTAGAAACCCGCTCATTACCCAGGAATGGGGTACTGGTGACCCAATGGCT
TATCGACTGGGAGAACTTGAAACCTGAGGAAGCGACCTGGGAGGACGCCAACTTCATCAAACAAGTTTTCCCGGAGTTCT
TCGCCAGCACGCTAAAGAGCTGGTTCCCAGAAAAATACACTCGAGGACAAGTATAGTTTCAGAAGGGGGCATTGTCAGCT
ACCTGAAGTTATCTGCACCTTGAGCACAAGATTCAGTCCAACAGCATACTGGTTCAGTTATAAGCAGAGGACAATCCAAC
GGCTGACAGCGAAGCACTTAAGATGGAGGGCCTAGATGGACTAAAGCTCTGTTTCATCGTCGCATGTTACTTTTACATGA
AATGTACTGCTCGCTGTTTCTTTCTCTTTTCACCGCGTGGGCGGACAGCTTTATAAGCGCCTGCGTGCGTCGAGAAAGGC
ATCAATGATTGTATCTCCAAACTACCAAACCCTAGCTTATCTAGTACTACCTTAGAAATCCCAAACTCATAGCTGGGTCT
CCGTGATTGGGAGTTAAATTCAGTTCCAATTGGTGCTATTTCTTTGGTCTGTATCTCTGATCCTAGCTGGGATCTGACAG
GGACCTGCTGCTGGCCTGCGTCGCCTCGTTCCGCGGCACGATGGGCTACGCCCGCAAAGTGTTCGACGGAATCCCCCACC
TGGACCTCTTCATGCACAACGTCATGGTCCGCGGCTACGCACACGGCGGCGCGCCGGCCGCGGCCTTCGTTTTGTACCGA
CGCATCGGGGCGGCGAGCCTGAGGCCCGACGCCTTCACGTTCTGCTACCTCCTCCGGGCCAGCGCTGGCTTGCCGGGTTC
CTGCGCCGGGTACCAGGTCCACGGCGTCGTCCTGAAGCTGGGCTTCTTGAGTGACGCGTTCGTGAGGAATGCGGTCATCA
ACATGCACGCCAAGTGCGGGGATTTGCAGGTGGCCGGCGCGCTTCTTGATGAGGCCGGCGAGGGGGATGTCGTGGCGTGG
TCGGCTGTCATAGCGGGGCATGCCGCTAGAGGTGACTTGGGCATTGCACGCCAACTGTTTGATGATTGTCGGCACAAAGA
CTTGGTGTGTTGGAATGTGATGGTGGCAGCGTATGCTAAGCATGGGGAGATGGAGAAGGCGAGGGAGCTGATTGACCGTG
CGCCAGAGACAGATGTGGTTTCGTGGAACACGATTATCACTGGGTACGCCGCGAAGGGGATGCTGAAGGAAGCACTGGAT
GTGCTTGATGAAATGAAGTGTGCTGGCTGGATGCCTGATGAGGCCACTATTGTTAGCTTGCTTTCCTGTTGTGCGAACTT
AGGGTCGCTTGACACAGGGAGGATGATACATTCATTACACTTGGAAGGTAGACCATGTACAAGTATTGTTCTTGGAAATG
CATTGGTATCAATGTATGCAAAGTGCGGAGATCTGCAGGCTGCATTGGAAGTCTTTAGCAGGACGAAGGAGAGGGATGTT
TGGACATGGAACTCGATCATCGGCGGGCTGGCCTTCCATGGGCAAGCAGAACAGTCCATCCACTTCTTCAATAAAATGCT
TCAAGAAGGAATGTGCCCAAATGCTATTTCTTTCCTCTGTGTTCTCGGTGCATGCAGTCATGCCGGATTAGTTGAAGATG
GTCAGAGATATTTCTCTTTGATGAAAGACAGGTACAAGATCGAGCAAAATGCAAAGCACTACAGTTGCATAGTGGATATG
CTTGGCCGTGCAGGCTTACTGGATGAAGCATTTGCAATTCTGAGCAGCATGAGGTGTGAACCTAGTGCAGTCATATGGAG
GACTCTGCTTGGTGCCTGCAAGA-CCACGGGAATGCAGCC-TTGGCAAACTTGCCAGGGAGAGGCTTCTAAAAATGAATG
AAGATGCAAGCGGAGATTATGTGCTGCTCTCTGGCATTTACGCGTCATGTGATGAATGGTTTGGAGTGGAGACATTGCGG
GGATCAATGGATGAAAGGGGGATAAGAAAGGCTGCTGGTTTTGCCCAGGTTGACCATAAAACTTCCTGTCTTTCAGCATT
GTGA--------TGTGTGGATATCCTACAGTGAAATTCGATGAACGTGTGGATTGTGTCCATGCTCAGCCTGTCATTTTA
TGCTCGGCCACCAGAAAGTGGAAGGAAGTAGCACCCTAATAGACAGATACCACTAGCAAGGAGGCCTAGTGAGTAAATCA
TATTCAAAACAGCCAAATGCTGGTGGTTTCACTTGGAGTTAGCAGCATCAGTGCAGCTAGCAGGTATGGAGCTTCCAGCT
GATGACTTGCCTCCGTTTTTTCATCTAGTTATGCAGAAAATTACCAGCAACTACTATGAAAAGTATAGTACTCAATCCAT
GACATTTA--TTTCTGTAAAAACTGTATAAGAAGTACAAAGGCCGATACAAACGAAGCAACACCG--TCAAGGCGGTGCA
CAATATAGAAGATGGTAGCAAGAGAATAGGCCCAC----------ATGAAGGAAGCAAGTACAAGAACCACCCATATCAC
ACATATATTTTTTTTTGCTGGGATATCACACTTATACTTCAGGGAGCAAATGATGGATAATTCGGTCTAGCGCCTGGCTA
GGGCCATAGCTGAGAGTAAGATGAGCAGTATCAGCAGAACCATGGCTCCAAACGAGCCAACCAGGGAGCCAGAGGTACGC
TCGCAGAAAGAATCCAACTGCTGGCATATAGCAAGCCAGTTTGCCCTGACATTACCCTTGTGTGCTAAGTAGACAATAGC
TGTTGCTGCAGATGACGCTGCGGTCACCAGAGCTAGCATTGCCTTCACAAGAAAGACAAGGAAATTAATT---AGTAGCT
GATAAAGTTATTGGTGCATGCTTCTCTTTCTTCAGTATAATAGGTTAGTAATCATGCTTTTTTTTT
>chr3B_28
---------------------------TGACAAAGTATGCCGACAA-AAACGCCTGGAAAGGAATTTCGAGGTGGGGGAC
ATGGTTTACTTACGAATACAGCCTTACAGGATGGCTGCATTCGGCCTTCGGCAAGCGATGAAATTGACAACCAAATTCTA
TGGGCCTTACAGAATACTGGAGAAGATTGGCCATGTCGCTTACAAACTCCAACTACCAGCTCACATTGGAATTAACCTGG
TGTTTCATGTCAGCCAGCTAAAAAAACACATGGGCACACATGCCGTTCCAAGCAAAGATCTACCTCTACTGGACAACAAT
GGCAGAATCAAAATAGAACCACTAGCTGTACTCGAGACTCGCTCACTACCCAGGAATGGAGTGCTTGTCACTCAGTGGCT
CATCGGCTGGGAGAACATGGAACCGGAAGAGGCAACCTGGGAGGACGCCAATTTCATCAAACAAGTTTTCCCAGAATTCT
TCGCCGGCACGCTCAAAAGCTGGTTCCCAGAGAAGTATACTTGAGGACAAGTATGGTTTCAGAAGGGGGCATTGTCAGCT
ACCTGAAGATAGCTGCACTTGT---------TTCAGTTAGACAGCATACTAGTGCAGTTAGAAGCAGAGGA-AATTCAAC
GGTGGACAG-----------------------------------------------------------------------
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>chr7D_960
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-------------------------------------------------------------------------------G
GGACCTGCTGCTGGCCTGCGTCGGCTCGTTCCGCGGCACCATGGGCTACGCCCGCAAAGTGTTCGACGGAATCCCCCACC
CGGACCTCTTCATGCACAACGTCATGGTGCGCGGCTACGCGCACGGCGGCGCGCCCGCCGCGGCCTTCGCCTTGTACCGA
CGCATCGGGGCGGCTGGCCTGAGGCCCGACGCCTTCACGTTCTGCTACCTCCTCCGGGCCAGCGCCGGCTTGTCGGGTTC
CTGCGCCGGGTGCCAGGTCCATGGCGTCGTCGTGAAGCTGGGCTTCTTGAGTGATGCTTTCGTGAGGAATGCCCTTATCA
ACATGCATGCCAAATGCGGGGATTTGCAGCTGGCCGGCGCGCTTCTTGATGAGGCCGGCGAGGGGGATGTCGTGGCGTGG
TCGGCTGTCATAGCGGGGAATGCCGCTAGAGGTGACTTGGGCATTGCACGGCAACTGTTTGATGATTGTCGGCACAAAGA
CTTGGTGTGTTGGAATGTGATGGTGGCAGCGTATGCTAAGCATGGGGATATGGAGAAGGCGAGGGAGCTGATTGACCGTG
TGCCGGAGACAGATGTGGTCTCGTGGAACACGATTATCACAGGGTACTCCACGAAGGGGATGCTGAAGGAAGCATTGGAG
GTGCTTGATGAAATGAAGTGTGCGGGCTGGTTGCCTGATGAGGCAACTATTGTTAGCTTGCTTTCGTGTTGTGCGAACTT
AGGGTCGCTTGACACAGGGAGGATGATACATTCAATGCACTTGGAAGGTAGACCGTGTACAAGTATTTTGCTTGGAAATG
CATTGCTATCAATGTATGCAAAGTGCGGAGATCTGCAGGCTGCATTGGAAGTCTTTAACAGGACGAAGGAGAGGGATGTT
TGGACATGGAACTCGATCATCGGCGGGCTGGCCTTCCATGGGCAAGCAGAACAGTCCATCCAATTCTTCAATAAAATGCT
TCAAGAAGGAATGTGCCCAAATGCTATTTCTTTCCTCTGTGTTCTCGGTGCATGCAGTCATGCCGGATTAGTTGAAGATG
GTCAGAGATATTTTTCTTTGATGAAAGACTGGTACAAGATCGAGCCTAATGCAAAGCACTACAGTTGCGTAGTGGATATG
CTTGGCCGTGCAGGCTTACTGGATGAAGCATTTGCAATTCTGAGCAGCATGAGGTGTGAACCTAGTGCAGTCATATGGAG
GACTCTGCTTGGTGCCTGCAAGATCCACGGGAATGCAGCCCTTGGCAAACTTGCCAGGGAGAGGCTTCTAAAAATGAATG
AAGACGCAAGCGGAGATTATGTGCTGCTCTCTGGCATTTACGCGTCCTGTGATGAATGGTTTGAAGTGGAGACATTGCGG
GGATCAATGGATGAAAGGGGGATAAGAAAGGTTGCTGGTTTTGCCCAGGTTGACCATAAAAGTACCTGTCTTCCAGCATT
GTGAATTTGTGATGTGTGGATATCCTACAGTGAAATTCGATGAACGTGTGGATTATGTCCATGCTCAGCTTGTCATTTTA
TGCTTGGTCACCAGAAAGTGGAAGGAAGTAGCACCCTAATAGACAGATACCACTAGCAAGAAGGCCTAGAGAGTAAATCA
TATTCAAAACTGCCAAATGCTGGTGGTTTCACTTGGAGTTAGCAGCATCAGTGCAACTAGCAGGTATGGAGCTTCCAGCT
GATGACTTGCCTCCGTTTTTTCATCTAGTTATGCAGAAAATTACCAGCAACTACTATGAAAAGTACAGTACTCAATCCAT
GACATTTATATTTCTGTAAAAACTGTAT---AAGTACAAAGGCCGATACAAAAGAAGTAACACCG--TCAAGGCAGTGCA
CAATATAGAAGATGGTAGCAAGAGAATAGGCCCACACATTATTACATGAAGGAAGCAAGTACAAGAACCACCCT-----C
ACACATATTTTTTTGTGCTGGGATATCACACTTATACTTCAGGGAGCAAATGATGGATAATTCGGTCTAGCGCCTGGCTA
GGGCCATGGCTGAGAGTAAGATGAGCAGTATCAGCAGAACCATGGCTCCAAACGAGCCAACCAGGGAGCCAGAGGTACGC
TCGCAGAAAGAATCCAACTGCTGGCATATAGCAAGCCAGTTTGCCCTGACATTACCCTTGTGTGCTAAGTAGACAATAGC
TGTTGCTGCAGATGACGCTGCGGTCACCAGAGCTAGCATTGCCTTCACAAGAAAGACAAGGAAATTAATTAGGAGTAGCT
GATAAAGTTATTGGTGCATGCTTCTCTTTCTTCAGTATACTAGGTTAGTAATCATGC---------
>chr7B_960
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-------------------------------------------------------------------------------G
GGACCTGCTACTCGCGTGCGTCTCCTCGTTCCGCGGCACCATGGGCTACGCCCGCAAAGTGTTCGACGGAATCCCCCACC
CGGACCTCTTCATGCACAACGTCATGGTCCGCGGCTACGCGCACGGCGGCGCGCCCGCCGCGGCCTTCGCCTTGTACCGA
CGCATCAGGACGGCTGGCCTGAGGCCCGACGCCTTCACGTTCTGCTACCTCCTCCGGGCCAGCGCTGGCTTGCCAGGCTC
TTGCGCCGGGTACCAGGTCCATGGCGTCGTCCTGAAGCTGGGCTTCTTGAATGATGCGTTCGTGAGGAATGCGCTTATCA
ACATGCATGCCAAATGTGGGGATTTGAAGGTGGCCGGTGCGCTTCTTGAGGAGGCCGGCGAGGGGGATGTCGTGGCGTGG
TCGGCTGTCATAGCGGGGCATGCCGCTAGAGGTGACTTGAACATTGCTCGGCAACTGTTTGATGATTGTCGGCACAAAGA
CTTGGTGTGTTGGAATGTAATGGTGGCAGCGTATGCTAAGCATGGGGAAATGGAGAAGGCGAGGGAGCTGATTGACCGTG
CGCCGGAGACAGATGTGGTTTCGTGGAACACTATTATCACAGGGTACTCCACGAAGGGGATGCTGAAGGAAGCATTGGAG
GTGCTTGATGAAATGAAGTGTGCGGGCTGGTTGCCTGATGAGGCAACTATTGTTAGCTTGCTTTCGTGTTGTGCGAACTT
AGGGTCGCTTGACACAGGGAGGATGATACATTCAATGCACTTGGAAGGTAGACCGTGTACAAGTATTGTGCTTGGAAATG
CATTGGTATCAATGTATGCAAAGTGTGGAGATCTGCAGGCTGCATTGGAAGTCTTTAGCAGGACGAAGGAGAGGGATGTT
TGGACATGGAACTCGATCATCGGCGGGCTGGCCTTCCATGGGCAAGCAGAACAGTCCATCCAATTCTTCAATAAAATGCT
TCAACAAGGAATGTGCCCAAATGCTATTTCTTTCCTCTGTGTTCTCGGTGCATGCAGTCATGCCGGATTAGTTGAAGATG
GTCAGAGATGTTTCTCTTTGATGAAAGACAGGTACAAGATCGAGCCAAATGCAAAGCACTACAGTTGCATAGTGGATATG
CTTGGCCGTGCAGGCTTACTGGATGATGCATTTGCAATTCTGAGCAGCATGAGGTGCGAACCTAGTGCAGTCATATGGAG
GACTCTGCTTGGTGCCTGCAAGATCCACGGGAATGCAGCCCTTGGCAAACTTGCCAGGGAGAGGCTTCTAAAAATGAATG
AAGATGCAAGCGAAGATTATGTGCTGCTCTCTGGCATTTACGCGTCATGTGATGAATGGTTTGGAGTGGAGACATTGCGG
GGATCAATGGATGAAAGGGGGATAAGAAAGGCTGCTGGTTTTGCCCAGGTTGACCATAAAACTTCCTGTCTTTCAGCA--
------TTGTGATGTGTGGATATCCTACAATGGAATTCGATGAATACTAGGGTTGTGTCCATGCTCTGTTTTCCATTTTA
TGCCCGGTAACCAGAAAGTGGCA-GAAGTAGCACCCTTGTATGCTGATACCAGTAGCAAGGAGACCTAGACAGTAAATCA
CATTCAAAACGTCGAG-TGTTGATGATTTCACTTGGAGCTAGCAGCATCAGTGCAACTAGCAGGTATGGAGTTTCCAGCT
AATGACATGTCTCAGTTTTTTTATCTAGTTATGCAGAAATTTACCAACAGCTCCAGTGAAAAGTATAGTACCCAAACCAT
GATATTTA--TTTCTGTAACAACCGTATAAGAAGTACAAAAGCCGATACAGAAGAAGTAACACACCATCAAGGCGGTGCA
CAATATAGGCT---------------------CACAGATTATTACATTAAGCACGCAAGTACAAGAACCACACC------
----------------------ATATCACACTTATACTTCAGGGAGCAAATGATGGACAATTTGGTCTAGCGCCTGGCCA
GGGCAATGGCTGAGAGTATGATGAGCAGTATCAGCAAAACCATGGCTCCAAACGAGCCAACCAGGGAGCCAGAGATACGC
TCGCAGAAAGAATCCAATTGCTGGCAAATAGCAAGCCAGTTTGCCCTGACATTGCCCTTGTGTGCCAAGTAGACAATAGC
TGTTGCTGCAGATGACGCTGCGGTGACCAGAGCTAGCATTGCCTTCACAAGAAACACAAGGAAAC---TT---AGTAGCT
GATACAGTTATTGATGCATGCTTCTCTTTCTTCAATATTCTAGATTAGTAACCATGC---------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------S----S-----S--S-----S-SS--S-----S--S---
-----S--S--S-----S-----S--SSS------S-----S--S--SS----SS-S------S-------S----S---
S--S-----------S--SS-S-----------------S--------S-----S----SS--------S--SS---S--
----------S----------SS--S---S----S--S-----SS----S--------S--S-----SS------S-S-S
-----S-------S---S--S--S-----S--S--S--S------S-------------S--S--S--S--S--S-----
S----S----------S--S----S--S--S--S-----------------S--------------------S--S----
-----S-------S--S--------------S--S--S---S------------S-------------------------
--------S--S------S-SSSSSSSSSSS------SSS----------S--S------S----------S---S----
--SS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
---------------------------------------S----------------------------------------
S---------------------------------------S--------------S-------------SS---------
--------------SS----------------------------------------------------------------
---------------------S--------------------------------S------------------S-S----
-------S-----S------------------------------------------------------------------
--------------------------------------------------S-----------------------------
------------------------------------------------S-------------------------------
----S-----------------------------------S------S--S-----------------------S----S
-----------------------S------S-------------S--------------------S--------------
----------------------------------S-S-----------------S--------------S----------
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---------------------------------------------------------------------S----------
-------S-------------------------------------------------------------S----------
----------S--------------------------------------------S------------------------
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----------------------------------------------------S----S----------------------
-------------------------------------------------------------------------SSSSSS-
---S----------S-----------------------------------------------------------------
-------S------------------------------------------------------------------------
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---------------------------------------S-----------------SSSSSSSSS
>forward_884
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----------------------------------------------------------------ACTCATAGCTGGGTCT
CCGT----------------------------------------------------------------------------
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>reverse_2616
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-------------------------------------------------------GCTAGCAGGTATGGAGCTTCC----
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