>input_sequence_56684
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------------------------------------------------------------GAGCCAGCTCCACACGGTTC
ATCGCCAGAAAGCAACCAACGC--CTCCCCCAAATTCAGGAGCTAGCCTAGC-----CATCGATCGACAAGCAAGCTTGC
TAGTGCCACACGCTTACGCTTTCTTGG-TTCTT----GCTCGATCATCTTCGGTT-------GATCGATCATGGTGGCGT
GGAGGGAGAGCTACCTGGACCTGATCCTGATCCCGCTGGGCCTGCTGCTGCCGGCGCTGTACCACGCCTGGCTGTGGCGG
GCCGTGCGGCGCCGCCCGCTCTCCACGGCCTTCGGGGTCTACTCGGCGGCGCGCAGGCTCTGGGCGGCCGGCATGATGCG
GGACAACGACGACAAGAAGGGGGTGCTGGTTGTGCAGTCGCTGCGGAACGTCATCATGGGGTCCACGCTCATGGCCACCA
CGTCGGTGCTCTTCTGCACGGGCATCGCCGCCGTGCTCAGCAGCACCTACTCCGTCAAGAAGCCGCTGAGCGACGCCGTG
TTCGGCGCGCACGGGGAGTACATGATGGCGCTCAAGTACGTGGCGCTGCTGCTCGTCTTCCTCTTCGCCTTCCTCTGCCA
CACCCTCACCATCTGCTTCCTCAACCAAGCCAGCTTCCTCATCAACACCTCCTGCCTCCCCCTCCCCGACGCCGGTAAGG
ACGACGACGGCGCCCGCCTGGTCGGCCTGCAGCTGCCGGCCGGCGCCGTCGGCGACTACGTGGGCGAGATCCTGGAGAGG
AGCTTCACGCTCAACTTCATCGGCAACAGGCTCTTCTACGCCGGGGTGCCCCTCCTGCTCTGGATCTTCGGCCCGGTGCT
CGCCTTCCTCTCCGCCGTGGTCATGATCCCCATACTCTACAACCTCGACATGGTTAACGTCGCCGCCGACAGAGGAACGA
AGGAACACAGCAGCGGCTGCGTCAACGGCAAGGCGAACGGGAACGGCTGCATGCAAGTCTGATCGATCGATGATCGTCCG
AAGCAAGTGG-AGTGCAGTGCAGTCAGCCAGAGGAAGACGAAGGCGTTTCTATCAGTCCGATCTCCTGCCCCTTTTACAT
GATGATTATTATTATT---ATCTTAGTGCATGTGTATGTAATATCCACCATGAACTGATGTTACAGTAGACTGCCACATT
GGTAGTGCAGTGCAGCACAGCACATATCTGAACCTGGGAAGCT-----------TAGCTTTCTTTTCATTCAGACAAGTC
GTGAGAGGGTTTCTTGTCAGCTAGTGGGTTTCCGGCTTGTCAGTTGCTGTGAT---------------------------
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>chr5B_1_TraesCS5B01G273000
CGGCGCTGCTGCCGCACGTGGTCCGCACGGTCCTGGTCGGTGATGAGA-------------TGAGGCGCTGCGCCTGCTC
GCGCGTGAGGACGCCGCGGAAGTTCACCTGCGACCGGGGCCTGTCCAAGCGCCACGCCGGCGCGTCGTACCCGCGGGCCG
CCTCGTGCGCGC------------------TCCGGAACGAGCCGAGGCTAAGCCGGACGTCGCCGGACCGGATCTCGGCG
GAGTACCAGCCCGAGGGGCGCTCGCGGACGCCGCGGTAGCCTGAAGAACCCCGGCGGCGCGGCGGCATGGTGGCGCGGTG
CTGGC-----------------------GGGGA--------AAGCGGCGAGAAAGAGCGACGA--------G--------
-----GTGGTGAGGAGGAGGGCGCGTGGCAGTGTGC-T----------------------GAGCGCGTGGCGAGCGGCGG
ATATTATAGGCGCGCGCGAAGCGTCGCGCCAAATCTACCGCGCCAGCTGCCGCTTTCT--CCCGCGCGCGCACTAACGCT
TTCCGTGC---------------------GCGGTAATTACCCGCCACCGCTGAAGCGCGCGAAACCAGACGGCGCGCGCT
AAATTACAATTTTATCGCGCGGA--TGTCTTTTGGCGTGCCTGTTGGAGATGCTCTTACACGACTAAAAAGCTGCCTACT
GCGTTGGGACCGGGCCATGTACGTGTGCAGCCGATGCCCCAGCACATCTTGTTGAGAACGAAGTGTAGACTCGACCTGTC
GTCGCTAGTCTCTACGTACCCTCTTCGTGTGTGTGGAACTGAAAACAATTTTGATTCTAACGAGAAGAACGAAGTGCG--
--ACGTACGCAGCTTG----CGATCGAT-GGCATTCTTTTTGTCACTCTAGGCC------GTGACTCACGAAGGAGGTCG
ATGGATCGATCAATCCGGCC--GGTCGTGTGTGTGTCTGCCTTTAGTCCACAGCTTGCTGCTTTTAGCTGATTGACCACC
AGCAA-AAGGATCCTCGTGGCCGTTGTGTAAGACACCACTATCTCTT----------C-CCCACCTCAGCT----TCAAC
TCCCTT----------------CCCTATATAACGCACCCATCCACAGACAGGTAGACAGAGAGCCAGCTCCACACGGTTC
ATCGCCAGAAAGCAACCAACGC--CTCCCCCAAATTCAGGAGCTAGCCTAGC-----CATCGATCGACAAGCAAGCTTGC
TAGTGCCACACGCTTACGCTTTCTTGG-TTCTT----GCTCGATCATCTTCGGTT-------GATCGATCATGGTGGCGT
GGAGGGAGAGCTACCTGGACCTGATCCTGATCCCGCTGGGCCTGCTGCTGCCGGCGCTGTACCACGCCTGGCTGTGGCGG
GCCGTGCGGCGCCGCCCGCTCTCCACGGCCTTCGGGGTCTACTCGGCGGCGCGCAGGCTCTGGGCGGCCGGCATGATGCG
GGACAACGACGACAAGAAGGGGGTGCTGGTTGTGCAGTCGCTGCGGAACGTCATCATGGGGTCCACGCTCATGGCCACCA
CGTCGGTGCTCTTCTGCACGGGCATCGCCGCCGTGCTCAGCAGCACCTACTCCGTCAAGAAGCCGCTGAGCGACGCCGTG
TTCGGCGCGCACGGGGAGTACATGATGGCGCTCAAGTACGTGGCGCTGCTGCTCGTCTTCCTCTTCGCCTTCCTCTGCCA
CACCCTCACCATCTGCTTCCTCAACCAAGCCAGCTTCCTCATCAACACCTCCTGCCTCCCCCTCCCCGACGCCGGTAAGG
ACGACGACGGCGCCCGCCTGGTCGGCCTGCAGCTGCCGGCCGGCGCCGTCGGCGACTACGTGGGCGAGATCCTGGAGAGG
AGCTTCACGCTCAACTTCATCGGCAACAGGCTCTTCTACGCCGGGGTGCCCCTCCTGCTCTGGATCTTCGGCCCGGTGCT
CGCCTTCCTCTCCGCCGTGGTCATGATCCCCATACTCTACAACCTCGACATGGTTAACGTCGCCGCCGACAGAGGAACGA
AGGAACACAGCAGCGGCTGCGTCAACGGCAAGGCGAACGGGAACGGCTGCATGCAAGTCTGATCGATCGATGATCGTCCG
AAGCAAGTGG-AGTGCAGTGCAGTCAGCCAGAGGAAGACGAAGGCGTTTCTATCAGTCCGATCTCCTGCCCCTTTTACAT
GATGATTATTATTATT---ATCTTAGTGCATGTGTATGTAATATCCACCATGAACTGATGTTACAGTAGACTGCCACATT
GGTAGTGCAGTGCAGCACAGCACATATCTGAACCTGGGAAGCT-----------TAGCTTTCTTTTCATTCAGACAAGTC
GTGAGAGGGTTTCTTGTCAGCTAGTGGGTTTCCGGCTTGTCAGTTGCTGTGATGTGGTGCATGTCGTGTGGATCGAGTTA
GTTGTACTACCGGAAATTCGGAATGACATGGAACCCATGCATAGCATAGCAGATGGTACGGGCTGCCTGCCCTTTTCCTG
GGTGTTGGGTTTGG-TTGGTTCATGGTCGAGTGACACATCGCCCACACTGTGACAATGTGTGCCTGCCGATGCCACTGCA
GGGCGTGTATCTCTGTAGGCATATTCCGAGCTGGCTTTATCCCTGTGGATCTGTTTGTCCCGCTTATTTTGACATTCAAG
CAGCA--AGTGTGCTCCGCGATCCCGGTTTATTGTCGGCTC---ACGACAACAACTAACAATGTAACACCCCTAA-AAAC
ACAACTGTAAGAGAGTCCAAACAATTCTGTTTAGCCACGTCGGTGCGGTTGGGACTTAACTGGAAGTCGTCTGCTGGCCG
CGCGGCCAAACCTGCATGCCAACAGCCACGGTACAGGGTTTTTCTTTTGTCAGGATACGCAGGCGTTCTGCCCATTTCAT
TGCCAACAGGGAAAGTAAAAGTTACAAGAATGAATTACTTCCTCCGACCGAAAATAAGTGTTGCAGTTTTGAACTAGGCT
TAGCTCAACCTTAGTTTAAAATTACAACACTTATTATGATTCAGGGGGAGTACATGAGAAAGGGAGAAAGAAAGAAAAGA
TTGTTGACACGGAGAATTACATCTATCGAAAAAAGGCCAACCGAAATAGCTCAAAGACTTCCTGCTGCGGTACAGTTCCT
CGACTACTGTCGACCATTGCAGAGAGACAGGTTCAGAGGCTGTTTCTCATGGATTTTTGTTAACGTAACCACCCCTCTTT
TTTTTTTGGATAACAACCCCTCCATATTCACTTGAAGTACTCCTCCGTTGCTAAATATTTGTCTTTCTAGATATTTCAAC
AAGTGACTACATACGGAGCAAAATAAGTGAATCAACACTCTACAATATGTCTATATACATCCGTATATGGTAGTCCATTT
GAAATCTCTAAAAGACAAAT
>chr2B_1
CGGCGCTGCTGCCGCACGTGGTCCGCACGGTTCTGGTCGGTGATGAGACGAGGCGGAGGGGTGAGGCGTTGCGCCTGCTC
GCGCGTGAAGACGTCCCAGAAGTTCATCTGTGACCGGGGCATCTCCAAGCGCCACGCCGCCGCGTCGTACGCGCGGGCCG
CCTCGTGCGCGC------------------TCCGGAACGAGCCGAGGCCGAGCCGGACGTCGCCGGACCGGATCTCGGCA
GAGTACCAGCCCGAGGGGCGCTCGCGGACGCCGCGGTAGCCCGAAGAACCCCGGCGGCGCGGCGGCATGGTGGCGCGGTG
CTGGC-----------------------GGGGA--------A-------------AGCGGCGA--------G--------
-----GTGGCCAGGAGGAGGGCGTGTGGAAGTGTGCTT----------------------GAGCGCGTGGCGAGCACCGG
ATTATATAGGCGCGCGCAAAGCGGCGCGCCAAATCTACCGCACCAGCTGCCGCTTTCT--CCCCCTCGCGCGCTAACGCT
TCCCGCGC---------------------GCGGTAATTTTTCGTCACCGCTGAAGCACGCGAAATTGGACGGCGCGCACT
AAAAAACAATTTTACCATGCGGACGTGTCTTTTGATATGTCTGTTGGAGATGCTCTTACTCAACTA--------------
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>chr2B_1
CGGCGCTGCTGCCGAACGTGGTCTGCGCGGTTCTGGTCGGTGATGAGACGAGGCAGAGGGGCGAGGCGCTGCGCCTGCTC
GCGCGTGAAGACGTCCCGGAAGTTCATCTGCGACGGGGGCCTCTCCAAGCGCCACGCCACCGCGTCGTACGCGCGGGCCG
CCTCGTGCGCGG------------------TCCAGAACGAGCCGAGGCTGAGCCGGACGT-GCCGGACCGGATCTCGGCG
GAGTACCAGCCGCTCGGGCGCTCGCGGACGCCGTGGTAGCCCGAAGAACCCCGGCAGCGCGGCGGCATGGTGGCGCGGTG
GTGGC-----------------------GGGGA--------A-------------AGTGGCGA--------GAAAGAGCG
GTGAGGTGGCGAGGAGAAGGGCGCGTGGCAGTGTGGTT----------------------GAGCGCCTGGCGAGCGCCGG
ATTTTATAAGCGCGCGCAAAGCGGCGCGCCAAATCTACCGCGCTAGCTGCCGCTTTCT--CCCGCTCGCGC--AAACGCT
TCCCGCGC---------------------GCGGTAGTTTGTCGCCACCGCTGGAGCGCGCGAAACTGGGCGGCACGCGGA
TAAACATTATTTTACCACGCGGGCGCGTCTTTTGGCGCGCCTGTTGGAGATGCTCT------------------------
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>chr2B_1
CGGCGCTGCTGCCGCACGTGGTCTGCACTGTCCTGGTCGGTGATGAGATGAGGCGGAGGGGCGAGGCGCTGCGCCTGCTC
GCGCGTGAAGACATCCCGGAAGTTCATGTGTGACCGGGGCCTCTCCAAGCGTCATGCCGCCGCGTCGTACGCGCGGGCCG
CCTCATGCGCGG------------------TCTGGAACGAGCCGAGGCCGAGCCGTACGTCGCCGGACCGGATCTCGGCG
AAGTACCAGCCCGAGGGGTGCCCGCGGACACCGCGGTAGCCCGAAGAACCCCGACGGCGCGGCGGCATGGTGGCGCGGTG
GTGGC-----------------------GGGGA--------A-------------AGCGGCGA--------GAAAGAGCG
AC----TGGCGAGGAGGAGGGCACGTGACAGTGTGGTT----------------------GAGCGCGTGGCGAGCGCCGG
ATTTTATAGGCGCGCGCGAAGCGGCGCGCCATATCTACCGCGCCAGCTGCCACTTTCT--CCCCCGCGCGCGGAAACGCT
TCCCGCGC---------------------GCGGTAATTTGCCGCCACCGCTGGAACACGCGAAACCGGGCCGCGCGTGCT
AAAAAACGCTTTTACCGCACGGACGCGTCTTTTAACGCGCCTGTTGGAGATGCTCT------------------------
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>chr2B_1
CGGCGCTGCTGCCGCACGTGGTCCGCACGGTCCTGGTCGGTGATGAGACGCGGCGGA-GGGCGACGCGTCGTGCCTGCTC
GCGCGTGAAGACGTCGGGGAAGTTCATCTGCGATCGGGGCCTGTCCAAGTGCCACGCCGCCGCGTCGTACGCGTGGGCCG
CCTCGTGCGCGC------------------TTTGGAATGAGTCGAGGCCGAGCCGGACATCGCCGGACAGGATCTCGATG
GAGTACCAGCCATTGGGGTGCTCGCGGATGCCGCGGTAGCCCGAAAAACCCCGGCGGCGCGGCGGTATGGTGGCGCGATG
GTGGC-----------------------GAGAAAAGCTGCGA-------------AGCGGCGA--------GAAAAAGCG
GCGAGGTGGCGAGGAGGAGGGCGCGTGGCGGTGTGC-T----------------------TTGCACGTGGCGAGCGCGGG
ATTTTATAGGCGCGCGCAAAGCAGTGCGCCAAATCTACCGCGCCGCATGCTGCTTTCT--CCCGTGCGCGCGCTAA-GCT
TCCCGCGC---------------------GCGGTAAG-TCCCCCCACCGCTGGAGCGCGCGAAACCGGCCGGTGTGCGCT
AAAACACAATTTTACCGCGCGGGTGCGCCTTTTGCCACGCCTGTTGGAGATGCTCTTA----------------------
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>chr2B_1
CGGCGCTGCTGCCGCACGTGGTCCGCACGGTCCTGGTCGGTGGTGAGACGAGGCGGAGGGGCGAGGCGCTGCGCCTGCTT
GCGCGTGAAGATGTCCCAGAAGTTCATCTGCGGCCGGGGCCTGTCCAAGCGCCACGCCGCCGCGTCGTACGCGCGGTCCG
CCTCGTGCTCGC------------------TCCGGAACGAGCCGAGGCCGAGCCGGACGTCGCCGGACTGGATCTCGGCG
GAGTACCAGCCCGAGGGGCGCTCGCGGACGCCGCGGTAGCCCGAAGAACCCCGGCAGCGCGGCGGCATGGTGGCACGATG
CTGGCCCAGGAGGAGGGCGCGTGGCAGTGTGGA--------A-------------AGCGGCGA--------GAAAGAGCG
GCGAGGTGGCGAGGAGGAGGGCGCGTGGCAGTGTGCTT----------------------GAGCGCGCAGCGAGCCCAGG
ATTTTATAGGCGTGCGCGAAGCGGCGCGCCAAATCTAATGCCCCAACTGCCGCTTTCT--CCCGCACGCGCGCTAACGCT
TCCCGCGC---------------------GCGGTAATTTCCCGCCACCGCTGGAGCGTGCGAAACCAGGCGGCGTGCGCT
AAAAAGCAATTTTACCGC--------------------------------------------------------------
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>chr4A_1
CGGCGCTGCTGCCGAACGTGGTCCGCACGGTCCCGGACAGTGAAGAGACGAGGCGGAGGGGCGAGGTGCTGCGCCTGCTC
TCGCGTGAAGACGCCGCGGAAGTTCATCTGCGACGGGGGCCTCTCCAAGCGCCACGCCGCCGCGTCGTATGCGCGGGCCG
CCTCGTACGCGG------------------TCCGGAACGAGCCGAGGCCGAGCCGGACATCGTCGGACCAGATCTCGGTG
GAGTACCAGGCGCTGGGGCGCTCGCGGACGCCGCGGTAGCCCGAAGAACCCCGGCGGCGCGGCGGCATGGTGGCGCAGTG
ATGAC-----------------------GGGGA--------A-------------AGCAGCGA--------GAAAGAGCG
GCGAGGTGGCAAGGAGGAGGGCGCATGGCAGTGTGGTT----------------------GAGCGCGTGGCGAGCGCCGG
ATTTTATGGGCGCGCGTGAAGCGGCGCGCCAAATCTACCACGCCAGCTGCCGCTTTCT--CCCGCGCTCGC--AAACGCT
TACCGCGC---------------------GCGGTATTTTGCCGCCACCGCTGGAGCACGCGAAACCGGACCGCTGCGCT-
-AAAAACGATTTTACCGCGCGGGCGCGTTTTTTGGCGCGCCTTATGGAGATGCTCTTA----------------------
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>chr4B_1
CGGCGCTGCTGCCAAACATGGTCCGCACGGTCCTGGTCGGTGATGAGATGAGGCGGAGGGGCGAGGCGCTGCGCCCGCTT
GCGCGTGAAGACGTCCCAGAAGTTCATCTGCGACGGGGGCCTCTCCAAGCGCCACGCCGCCGCGTCGTACGCGCGTGCCG
CCTCGTGCGCGG------------------TCCGGAACGAGCCGAGGCCGAGCCGGACATGGCCGGACCGGATCTCGGCG
GAGTACCAGCCGTTGGGGCGCTCGCGAACGCCGCGGTAGCCCGAAGAACCCCGGCGGCGCGACGACATGGTGGCACGGTG
GTGGC-----------------------GGGGA--------A-------------AGCGGCGA--------GAAAGAGCG
GCGATGTGGCGAGGAGGAGGGCGCGTGGCAGTATGGTT----------------------GAGCGCGTGGCGAGCGCCAG
ATTTTATAGGCGCGCGCGAAGCGGCGCGCCACATCTATCGCTCCAGCTGCCGCTTTCT----------------------
-CCCCTGCGCGCGCAAACGCTCCCCGTGCGCGGTAGTTTGCCGCCATCGTTGGAGTGTGCGAAACCGGGCCGTGCGCGCT
AAAAA-CGATTTTACCGCGTGGGCGCGTCTTTTGACGCACCTGTTGGAGATGCTCTTA----------------------
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>chr2D_1
CGGCGCTGCTGCCGCACGTGGTCCGCACGGTCCTGGTCGGTGATGAGACGAGGCGGAGGGGCGAGGCACTGCGCCTGCTC
GCACGTGAAGACGTCCCGGAAGTTCATCTGCGACGGGGGCCTCTCCAAGCGCCACACCGCCGCGTCGTACACACGGGCCG
CCTCGTGCGCGG------------------TCCGGAACGAGCTGAGGCCGAGCCGGACGTCGCCGGACCGGATCTCGGCG
GAGTACCAGCCCGAGGGGCGCTCGCGGACGCCGCGGTAGCCCGAAGAACCC-GATGGCGCGGCGGCATGGTGGCGCGGTG
GTGGC-----------------------GGGGA--------A-------------AGCGGCGA--------GAAAGAGCG
TCGAGGTGGCGAGGAGGAGGGCACGTGGCAGTGTGGTT----------------------GAGCGCGTGGCGAGCGCCAG
ATTTTATAGGCGCGCGCGAAGCGGCGCGCCAAATCTATCGCGCCAGCTGCCGCTTTCT----------------------
-CCCGCGC---------------------GCGGTAATTTGCCGCCACCACTGGAGCACGCGAAACCGGGCCGCACGCGCT
AAAAAACGATTTTACCGCGCGGGCGCGTCTTTTGGCGTGCCTGTTGGAGATGCTCT------------------------
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>chr1B_1
CGGCGCTGCTGCCGAACGTGGTCCGCACGGTCCTGGTCGGTGATGAGACGAGGCGGAGGGGCGACGCGCTGCGCCTGCTC
GCGCGTGAAGACGTCTCGGAAGTTCATCTGCGACTGGGGCCTCTTCAAGCGCCACGCCGCCGCGTCGTACGCGCGGGCCG
CCTCGTGCGCGCGGGCCGCCTCGTGCGCGGTCCGGAACGACCCGAGGCCAAGCCGAACGTCGCCGGACCGGATCTCGGCG
GAGTACGAGCCGCTCGGGCGCTCGCGGACGCCGCGGTAGCCCGAAGAACACCGGTGGCGCGGTGGTGG------------
----------------------------GGGGA--------A-------------AGCGGCGA--------GAAAGAGCG
GCGAGGTGGCGAGGAGAAGGGCGTGTGACAGT----------------------------------GTGGTGAGCGTCGG
ATTTTATAGACGCGCGCGAAGCGGCGCGGCA--------------GCTGCCGCTTTCT--CCCGCGCGCGC--AAACGCT
TCCCGCGC---------------------GCGGTAATTTGCCGCCACCGCTGGAGCGCGCAAAACCGGGCCGCGCGCGCT
AAATGTCGATTTTACCGCGTGGACGCGTCTTTTGGCACGCCTATTGGAGATACTCT------------------------
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>chr5B_2
-GGCGCTGCTGCCACACGTGGTCCGCACGGTCCTGGTCGGTGATGAGACGAGGCGGAGGGGCGAGGCGCTGCGCCTGCTC
GCACGTGAAGACGTCGCAAAAGTTCATCTGCGACCGGGGCCTGTCCAAGCGCCACGCCGCCGCGTCGTACGCGCGGGCCG
CCTCATGTGTGC------------------TCCGGAACGAACCGAGGCCGAGCCGGACGTCGCCGGACCGGATCTCGGCA
GAGTACCAGCCCGAGGGGTGCTCACGGACGCCCCCGTAGCCCGAAGAACCCCGGCGGCGCGGCGGCATGGTGGCGCGGTG
TTGGC-----------------------GGGGA--------A-------------AACGGCGA--------GAAAGAGCG
ACGAGGTGGCGAGGAGGAGGACGCGTGGCAGTGTGC-T----------------------GAGCGCGTGGCGAGCGCCGG
ATTTTATAGGCGCGCGCAAAGCGGCGCGCCAAATCTACCGCGCCAGCTGCCGCTTTCT----------------------
-CCCGCGC---------------------GCGGTAATTTCCCGCCACCGCTGAAGCACGCGAAACCGGGCGGCGCGCGCT
AAAATGCAATTTTACCGCGCGGGCGCGTCTTTTGGCGCGCCTGTTGAAGATGCTCT------------------------
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>chr2B_2
-GGCGCTGCTGCCGCACGTGGTCCGCACGGTCCTGGTCGGTGACGAGACGAGGCGGAGGGGCGAGGTGTTGCGCCTGCTC
ACGTGTGAAGACGTCGCGGAAGTTCATCTGCGACCGGGGCATGTCCAAGCCCCACGTCGCCGCGTCGTACGCGCGGGCCG
CCTCGTGCGCGC------------------TCCGGAACGAGCCGAGGCCGAGCCGAACGTTGCCGGACCGGATCTCGGCG
GAGTACCAGTCCGAGGGGCGCTCGCGGACGCCGCGGTAGCCCGAAGAACCCCGGCGGCTCGGCGGCATGGTGGCGCGGTG
CTGGC-----------------------GGGGA--------A-------------AGCGGCGAAGCATCGAGAAAGAGCG
GCGAGGTGGTGAGGAGGAGGGCGCGTGGCAGTGTGC-T----------------------GAGCGCGTGGCGAGCGCCAG
A-TTTATAGGCGTGCGCGAAGCGGCGCGCCAAATCTACCGCGCCAGCTGCCGGTTTCTCCCGCGCGCGCGC--TAAGGCT
TCCCGCGC---------------------GCGGTAATTTCCCGTCACCGCTGGAGCGCACGAAACCGGGAGGCACACGCT
AAAATGCAATTTTACCACGCGG----------------------------------------------------------
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>chr3B_4
---CGCTGCTGCCGCACGTGGTCCGCACGGTCCTGGTCGGTGATGAGACGAGGCGGAGGGGCGACGCGTTGCGCCTGCTC
GCGCATTAAGACGTCGCGGAAGTTCATCTGTGACGGGGGCCTCTCCAAGCGCCACGCCGCCGCGTCGTACGCGCGGGCCG
CCTCGTGCGCGG------------------TCCGGAACGACCCG-GGCCGAGCCAGACGTCGCCGGACCGGATCTCGGCG
GAGTACCAGCCGCTCGGGCGCTCGCGGACGCCGCGGTAGCCCGAAGAACCCCGGCGACGTGGCGGCATGGTGGCGTGGTG
CTGGC-----------------------GGGGA--------A-------------AGCGGCGAAGCGACGAGAAAGTGCG
GCGAGGTGGCGAGGAGG-GGGCGCGTGGCGAGGTGGCGAAGCGGCGAGGTGGCGAGGAGGGAGCGCGTGGCGAGCGCGGG
ATTTTATAGGCGCGCGCGAAGCGGTGCGCCAAATCTACCGCGCCAGCTACCGCTTTCT----------------------
-CCCGCGCGCGCACTGACGCTCCCCGTACGCGGTAATTTCCCGCCACCGTTGGAGCGCGCGAAACCGAGCGGCGCGCGCT
AAAACGCAATTTTAC--CGCGGGCACGCCTTTTGCCGCGCCTGTTTGAGATGCTCT------------------------
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>chr2D_49
-------------------------------------------------------------TGACGCGCTGCGCCTGCTC
GCGCGTGAAGACGTTCCGGAAGTTCATCTGCGACCGGGGCCTCTCCAAGCGCCACATTGCCGCGTCGTAGGCGCGGGCCG
CCTCGTACGCGC------------------TCCGGAACGACCCGAGGCCGAGCCGGACGTCGCTGGACCGGATCTCGGCG
GAGTATCAGCCGTTGGGGCGCTCGCGGACGCCGCGGTAGACCGAAGAACCCCGGCGGCGCGGCGGCATGGTGGTGCGGTG
GTGGC-----------------------GCGGA--------A-------------AGCGGCGAAGCACCGAGGTTGCGA-
-------------GGGGAGGGCGCGTGGCTGTGTTC-T----------------------GTGCGCGTGGCGAGCGCGGG
ATTTTATAGGCGCGCGCGAAGCGGCGCGCCAATTCTACCGCGCCGCGTGCCGCTTTCTCCTGCGCGCGCGC--AAATGCT
TCCCGCGC---------------------GCGGTAAGTTCCCGCCACCGCTGGAGCGCGCGGAACCAGCCGGCGCGCGCT
AAAACCAAACTTTACCGCGCGAGCGCGCCTTTTGCCGCGCCTGTTGGAGATGCTCTTA----------------------
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>chr5A_50
--------------------------------------------------------------GACGCGCTGCGCCTGCTC
GCGCGTGAAGACGTCCCGGAAGTTCATCTGCGTCCGGGGCCTATCCAACCGCCACGCCGCCGCGTCGTACGCGCGGGCCG
CCTTGTACGCGC------------------TCCGGAACGACCCGAGGCCGAGCCGGACGTCGCCGGACCGGATCTCGGCG
GAGTACCAGCCGTTGGGGCGCTCGCGGACGCCGCGGTAGCCCGACGAACCCCGGCGGCGCGGCGGCATGGTGGCGCGGTG
GTGGC-----------------------GTGGA--------A-------------AGCGGCGAAGCGGCGAGGTTGCGA-
-------------GGGGAGGGCGTGTGGCTGTGT-C-T----------------------GTGCGCGTGGCGAGCGCGGC
ATTTTATAGGCGCGCGCGAAGCGGCGCGCCAAATCTACCGCGCCGCGTGCCGCTTTCTCCCGCGCGCGCGC--AAACGCT
TTCCGCGC---------------------GCGGTAACTTCCCGCCACCGCTGGAGCGCGCGGAACCAGCCGGCGCGCGCT
AAACCCAAATTTTACCGCGCGGGCGCGTCTTTTGCAGCACCTGTTGGAGATACTCTTA----------------------
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>chr3A_50
--------------------------------------------------------------GACGCGCTGCGCCTGCTC
GCGCGTGAAGACGTCCCGGAAGTTCATCTGCGTCCGGGGCCTATCCAACCGCCACGCCGCCGCGTCGTACGCGCGGGCCG
CCTCGTACGCGC------------------TCCGGAACGACCCGATGCCGAGCCGGACGTCGCCGGACCGGATCTCGGCG
GAGTACCAGCCGTTGGGGCGCTCGCGGACGCCGCGGTAGCCCGACGAACCCCGGCGGCGCGGCGGCATGGTGGCGCGGTG
GTGGC-----------------------GCGGA--------A-------------AGCGGCGAAGCGGCGAGGTTGCGA-
-------------GGGGAGGGCGCGTGGCTGTGT-C-T----------------------GTGCGCGTGGCGAGCGCGGC
ATTTTATAGGCGCGCGCGAAGCGGCGCGCCAAATCTACCGCGCCGCGTGCCGCTTTCTCCCCCGCGCGCGC--AAACGCT
TCCCGCGC---------------------GCGGTAACTTTCCGCCACCGCTGGAGCGCGCGGAACCAGCCGGCGCACGCT
AAACCCAAATTTTATCGCGCGGGCGCGTCTTTTGCAGCACCTGTTGGAGATGCTCTTA----------------------
--------------------------------------------------------------------------------
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>chr3A_50
--------------------------------------------------------------GACGCGCTACGCCTGCTC
GCGCGTGAAGACGTCCCGGAAGTTCATCTGCGTCCGGGGCCTATCTAACTGCCACGCTGCCGCGTCGTACACGCGGGCCG
CCTCGTACGCGC------------------TCCGGAACAACCCGAGGCCGAGCTGGACGTCGCCGGACCGGATCTCGGCG
GAGTACCAGCCGTTGGGGTGCTCGCGGACGCCGCGGTAGCCCGACGAACCCCGGCGGCGCGGCGGCATGGTGGCGCGGTG
GTGGC-----------------------GCGGA--------A-------------AGCGGCGAAGCGGCGAGGTTGCGA-
-------------GGGGAGGGCGCGTGGCTGTGT-C-T----------------------GTGCGCGTGGCGAGCGCGGC
ATTTTATAGGCGCGCGCGAAGCGGCGCGCCAAATCTACCGCGCCGAGTGTCGCTTTCTCCCGCGCGCGCGC--AAACGCT
TTCCGTGC---------------------GCGGTAACTTCCCGCCACCGCTGGAGCGTGCGGAAACAGCCG--GCGCGCT
AAACCCAAATTTTACCGCGCGGGCGCGTCTTTTGCAGCACCTGTTGGAGATGCTCTTA----------------------
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>chr5A_53
-----------------------------------------------------------------GCGCTGCGCCTGCTC
GCGCGTGAAGACGTCCCTGAAGTTCATCTGCGTCCGGGGCCTATCCAACCGCCACGCCGCCGCGTCGTACGCGCGGGCCG
CCTCGTACGTGC------------------TCCGGAACGACCCGAGGCCGAGCCGGACGTCGCCGGACCGGATCTCGGCG
GAGTACCAGCCGTTGGGGCACTCGCGGACGCCGCGGTAGCCCGACGAACCCCGGCGGCGCGGCGGCATGGTGGCGCGGTG
GTGGC-----------------------GCGGA--------A-------------AGCGGCGAAGCGGCGAGGTTGCGA-
-------------GGTGAGGGCGCGTGGCTGTGT-C-T----------------------ATGCGCGTGGCGAGCGCGGC
ATTTTATAGGCGCGCGCGAAGCGGCGCGCCAAATCTACCGCGCCGCGTGCCGCTTTCTCCCGCGCGCGC----ATACGCT
TCCCGCGC---------------------GCGGTAACTTCCCGCCACCGCTGGAGCGCGCGGAACCAGCTGGCGCGCGCT
AAACGCAAATTTTACCGCGCGGGCGCGTCTTTTGCAGCACCTGTTGGAGATGCTCT------------------------
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>chr5D_693
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-----------------------TTCATGTACGTGGAATGAATAACCA--TTGATTCGAACGAGACGAACCAAGGGCG--
--ACGTACGAAGGTTGCGATCGATCGAT-GGCATTCTTTTTGTTATAGTCTGGGCGGTGGGTGACTCACGAAGGAGGTCG
ATGGATCGATCAGTCCGGCC--GGTCGTGTGTGTGTCTGTCTTTAGTCCACAGCTTGCTGCTTTCAGCTGATTGACCACC
AGCAAAAAGGATCCTCGTGGCCGTTGTGTAAGACACCACTATCTCTCTCTCTCTATCC-CCCACCTCAGCT----TCAAC
TCCCTT----------------CCCTATATAACGCACCCATCCACGGACAGGT-------------------------TC
ATCGGCAGAAAGCGAGCAACGC--CTACCCCAAATTCAGGAGCTAGCTTAGCTTAGCCATCGATCGACAAGCAAGCGTGC
TAGTGCCACACGCTTACGCTTTCTTGGGTTCTT----GCTCGATCATCGTCGTCGGCCGATCGATCGACCATGGTGGTGT
GGAGGGATAGCTATCTGGACCTGATCCTGGTCCCGCTGGGGCTGCTGCTGCCGGCGCTGTACCACGCCTGGCTGTGGCGG
GCCGTGCGGCGCCGCCCGCTCTCCACGGCCTTCGGCGTCTACTCGGCCGCGCGCAGGCTCTGGGCGGCCGGCATGATGCG
GGACAACGACGACAAGAAGGGGGTGCTGGTGGTGCAGTCGATCCGGAACGTCATCATGGGGTCCACGCTCATGGCCACCA
CGTCGGTGCTCTTCTGCACCGGCATCGCCGCCGTGCTCAGCAGCACCTACTCCGTGAAGAAGCCGCTGAGCGACGCCGTG
TTCGGCGCGCACGGGGAGTACATGATGGCGCTCAAGTACGTGGCGCTGCTCCTCGTCTTCCTCTTCGCCTTCCTCTGCCA
CACGCTCACCATCTGCTTCCTCAACCAAGCCAGCTTCCTCATCAACACCTCCTGCCTCCCGCTCCCCGACGCCGGTAAGG
ACGACGACGGCGCCCGCCTGGTCGGCGTGCAGCTTCCGGCCGGCGCCGTGAGCTACTACGTGGGCGAGATCCTCGAGAGG
AGCTTCACGCTCAACTTCGTCGGCAACAGGCTGTTCTACGCCGGGGTGCCCCTCCTGCTCTGGATCTTCGGCCCGCTGCT
CGCCTTCCTCTCCTCCCTCGTCATGATCCCGATACTCTACAACCTCGACATGGTGAACGTCGCCGCCGACAGAGGAGCGA
AGGAGCACAGCAGCGGCTGCATCAACGGCAAGGCGAACGGGAACGGCTTCATGCAAGTCTGATCGATT----------CG
AAGCAGGTTG-AGTTCAGT----TCAGCTAGAGGAAGACGAAGGCGTTTCGATCAGTCCGATCTCCTGCTCCTTTTACAT
GATGATTACTATTATCTTAATCTTAGTGCATGTGTATGTAATATGCACCATGAATTGGTAGTGC----------------
---AGTGCAGTGCAGCACAGCACATCTCTGAACCTGGGAAGGTACT------ACTAGCTTTCTTTTCACTCAGACAAGTC
GGGAGGGGGTTTCTTGTCAGTTAGTCGGTTTCTGGCTTGTCAGTAGC-----TGTGGTGCGTGTCGTGTGGATCGAGTTA
GTTGTACTACCAGAAATTCGGAATGACATGGAACCCATGCATAGCATAGCCGATGGTACGGGCTGCCTGCCCTTTTCCTG
GATGTTCGGTTGGGTTTGGTTCTTGGTGGAGTGACAG-----------TGTGACAATGCATGCCTACCCATGTAC-----
-----TGTATATCTGTAGGCATATTCCGAGCTGGCTTTATCCCTGTGGATCTGTTTGTCCCGCTTATTTTGACACTGCAG
CAGCAAGAGTGTGCTCCGCGATCCCGGTTTATTGTCGGCTCGCAACAACAACTAACAAC--TGTAACACCCCTAACAAAC
ACAACTGTAAGAGAGTCCAAACATTTCTGTTTAGCTACGTCCGTGCGGTTGGGACTTAACTGGAAGTCGTCTGCTGGCTG
CGCGGCCAAACCTGCATGCCAACAGCCACGGTACAGGGTTTTTCTTTTGACGGGATAGGCAGGCTTTCTGCCCATTTCAT
T-------------------------------------------------------------------------------
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>chr5A_732
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--------------------------------------------------------------AGACGAACGAAGGGCGAC
ATACGTACGCAACTTGCGATCGATCGAT-GGCATTCCGTTTGTTAGTCTGGGCA------GTGACTCACGAAGGAGGTCG
ATCGATCGATCAGTCTGCGCCTGGTCGTGTGTGTGTCTGCCTTTAGTCCACTGCTTGCTGCTTTTAGCTGATTGACCACC
AGCAAAAAGGATCCTCGTGGCCGTTGTGTAAGACACCACTATCTCTT----------CCCCCACCTCAGCTCACCTCAAC
TCCCTT----------------CCCTATATAACGCACCCATCCATGGACAGGTAGATAGAGAGCCACCTCCACACGGTTC
ATCGCCAGAAAG-GAGCAACGCCTCTCCCCCAAATTCAGGAGCTAGCTTAGC-----CATCGATCGACAAGCAAGCGTGC
TAGTGCCACACGCTTACGCTTTGTTGG-TTCTT----GCTCGATCGTCGTCGTCGGCCGATCGATCGACCATGGTGGTGT
GGAGGGAGAGCTACCTGGACCTCATCCTGATCCCGCTGGGGCTGCTCCTCCCGGCGCTGTACCACGCCTGGCTGTGGCGG
GCCGTGCGGCGCCGCCCGCTCACCACGGCCTTCGGGGTCTACTCGGCGGCACGCAGGCTGTGGGCGGCCGGCATGATGCG
AGACAACGACGACAAGAAGGGGGTGCTGGTGGTGCAGTCCATCCGGAACGTCATCATGGGGTCCACGCTCATGGCCACCA
CCTCGGTGCTCTTCTGCACCGGCATCGCCGCCGTGCTCAGCAGCACCTACTCCGTCAAGAAGCCGCTGAGCGACGCCGTG
TTCGGCGCGCACGGGGAGTACATGATGGCGCTCAAGTACGTGGCGCTGCTGCTCGTCTTCCTCTTCTCCTTCCTCTGCCA
CACCCTCACCATCTGCTTCCTCAACCAAGCCAGCTTCCTCATCAACACCTCCTGCCTCCCCCTCCCCGACGCCGAAAAGG
ACGACGACGGCGCCCGCCTGGTCGGCCTGCAGCTGCCGGCCGGCGCCGTGGGCGACTACGTGGGCGAGATCCTCGAGAGG
AGCTTCACGCTCAACTTCGTGGGCAACAGGCTCTTCTACGCCGGGGTGCCCCTCCTGCTCTGGATCTTCGGCCCGCTGCT
CGCCTTCCTCTCCGCCCTGGTCATGATCCCCATACTCTACAACCTCGACATGGTGCACGTCGCCGCCGACAGAGGAACGA
AGGAGCACAGCAGCGGCTGCGTCAACGGCAAGGCGAAGGGGAATGGCTGCATGCAAGTCTGATCGATCGGTGAACCACCG
AAGAAGCGTGAAGTGCAGTCCAGTCAGTTAGAGTAAGCCGAAGGCGTTTCGATC--------------------------
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>chr5A_748
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--ACGTACGCAACTTGCGATGGATCGATTGGCATTCTTTTTGTTAGTCTGGGCA------GTGACTCACGAAGGAGGTCG
ATGGATCGGGCAGTGACTCACGAAGGAGGTAGC-------CTTCAGTCCACCGCTTGCTACTTTCAGCTGATTGACCACC
AGCAAAAAGGATCCTCGTGGCCGTTGTGTAAGACACCACTATCTCTCTCTCTCTC-CC-ACCGCCTCAGCT----TCAAC
TCCCTTCCCCCAGCTCAGCTCACCCTATATAAAGCACCCATCCACGGACAGGTAGACAGATAGCCAGCTCCACACGGTTC
ATCGCCACAAAGCAACCAACGC--CTCCCCCAAATTCAGGAGC--------------CATCGATCGACAGAGAAGCGTGC
TAGTGCCACACGCTTACGCTTTCTTGG-TTCTTGTTCGCTCGATCATCGTCGTCTGCCGATCGATCAATCATGGTGGCGT
GGAGGGAGAGCTACCTGGACCTCATCCTGATCCCACTGGGGCTCCTCCTCCCGGCGCTGTACCACGCCTGGCTGTGGCGC
GCGGTGCGGCGCCGCCCGCTCTCCACGGCCTTCGGCGTCTACTCGGCGGCGCGCCGGCTCTGGGCGGCCGGCATGATGCG
GGACAACGACGACAAGAAGGGGGTGCTGGTGGTGCAGTCGATCCGGAACGTCATCATGGGGTCCACGCTCATGGCCACCA
CCTCGGTGCTCTTCTGCACCGGCATCGCCGCCGTGCTCAGCAGCACCTACTCGGTGAAGAAGCCGCTGAGCGACGCCGTG
TTCGGCGCGCACGGGGAGTACATGATGGCGCTCAAGTACGTGGCGCTGCTGCTCGTCTTCCTCTTCTCATTCCTCTGCCA
CACCCTCACCATCTGCTTCCTCAACCAAGCCAGCTTCCTCATCAACACCTCCTGCCTCCCCCTCCCCGACGCCGAAAAGG
ACGACGACGGCGCCCGCCTGGTCGGCCTGCAGCTGCCGGCCGGCGCCGTGAGCGACTACGTGGGCGAGATCCTCGAGAGG
AGCTTCACGCTCAACTTCGTGGGCAACAGGCTCTTCTACGCCGGGGTGCCCCTCCTGCTCTGGATCTTCGGCCCGCTGCT
CGCCTTCCTCTCCTCCCTCGTCATGATCCCGATACTCTACAACCTCGACATGGTGAACGTCGCCGGCGACAGAGGGACGA
AGGAGCACAGCAGCGGCTGCGTCAACGGCAAGGCGAACGGGAACGGCTGCATGCAAGTCTGATCAATCGATGATCGTCGG
AAGCAAGTGC-AGTGCAGTGCAGTCAGCCAGAGGAAGACGAAGGCGTTTCGATCAGTCCGATCCCCTGCCCCTTTTACAT
GATGATTAT-----------------------------------GCACCATGAACTGATGTTACAGTAGACTGCCACATT
GGTAGTGCAGTGCAGCACAGCACATCTCTGAACCTGGGAAGGTACTACTAGTACTAGCTTTCTTTTCATCCAGACAAGTC
GGGAGGGGGTTTCTTGTCAGCTAGTCGGTTTCTGGCTTGTCAGTAGC-----TGCGGTGCGTGTCGTGTGGATCGAGTTA
GTTGTACTACCAGAAATTCGGAATGACATGGAACCCATGCGTATCATAGCAGATGGTACGGGCTGCCTGCCCTTTTCCTG
GGTGTTCGGTTGGGTTTGGTTCATGGTGGAGTGACAG-----------TGTGACAATGTATGCCTGGCGATGCCACTACA
GGGCGTG--TATCTGTAGGCATATTCCGAGCTGGCTTTATCCCTGTGGATCTGTTTGTCCCGCTTATTTTGACACTGCTG
CAGCAAGAGTGTGCTCCGCGATCCCGGTTTATTGTCGGCTC---ACAACAACTAACAAC--TGTAACACCCCTAACAAAC
ACAATTGTAAGAGAGTCCAAACATTTCTGTTCAGCCACGTCGGTGCGGTTGGGACTTAACTGGAAGTCGTCTGCTGGCTG
CGCGGCCAAACCTGCATGCCAACAGCCACGGTACGGGGTTTTTCTTTTGACGGGATACGCGGGCTTTCTGCCCATTTCAT
T-------------------------------------------------------------------------------
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--------------------
>SNPs
--------------------------------------------------------------------------------
--------S-----------------S--------------------------------S----------S---------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
------------------------------------------SSSSSSSSSSSSS----S--------------------
----------------------------------------------------------------------------S---
--S--------------------S-----------------------------------------------S--------
--------------------------------------S-----------------------------------------
-----------------------------------------------------------S-S----SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS---S---SS------SSS-S---S-SS-------S-------S--------S-----
-------------------------------------------S-S---S---S--------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
-----------------------------------------------S----------------------------S---
------------------------------------------------S---SS--------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
------------------------------S---------S-S-------------------------------------
-------------------S------------------------------------------------------------
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-------------------------------------------------S-----------------------S------
------------------S--------------------------------------------------------S----
----------------S-------------------------------------S-------------------------
----S---------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
---------------S----------------------------S-----------------------------------
-------------------------S---------------S--------------------------------------
-S---S-------------------S------S-----------S--SSSSS--------S-------------------
-----------S--------------------------------------------------------------------
------S----S---------------S--------SSSSSSSSSSSS-----------S-----------------S--
----------S---------------------------------------------------------------S-SS--
----------------------------------------------S-----S-SS---SS-------------------
-----------------------S------------------------------------------------------S-
-------------------------------------------------S-S------------S---------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_813
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-------------------------------------------------------------------------ACCTGTC
GTCGCTAGTCTCT-------------------------------------------------------------------
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>reverse_2598
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-------------------------------------ATCGCCCACACTGTGACAAT-----------------------
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--------------------
