>input_sequence_56636
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--------------------ACACTCCTCCCACCACTTCGCCGCGCGCACAACCCAACCCACCACCGCCTGGCCGCACCA
CAGCACGCGATGGCCGCCGACGCGCCTTCCGACGACCCGCTTGCCGGTGGCGGGGACAGCGCCTGCTCCACGCCGTTCGT
CAGCGCGCCCTCCAGCCCCACCCGCGACCCCTTCTCCGGCCACCACCACGCCGCGTGCTTCTTCAGCGCGCCGGCGAGCC
CCACCCGCGGCGCCAGCAACGAGTTTGCCTGCGGCGGCCTCGACTTTGACTTCGACTTCGACTTCTCGTCCCGCTTCCCG
TCGCCCTCCGCCGCCGCCATGTCGTCCGCCGACGAGCTCTTCCACAACGGCCAGATCCGCCCCGTCCGCCTCTCCGCGAT
GCTGCTCCAGCCGCACCAGCCTCACCTCGCCTCGCCTTCACAGGCCCCCGTGGAGGTGGAAGAGGGCGAGCGCGGCCGCT
TCAGGGGCCGGTCCGTGCACCGCAAGGCGCGCTCGCTCTCCCCATTCCGTGCCCACTGGAGGTCGCCGTCTCCCGCGCCG
CCGCCGGAGTCCGAGTCCGTCGAGCCGGCGGCCACGCCCCCGGCCTCGCGCTCCTCGTCGTCCTCGTCCACCGCTTCGTC
CGCGTCCTCCTCTTCCTCGAGGAGCTCCCGGCGTTGGGGCTTCATTAAGGATCTCCTCCACCGGAGCAAGTCAGACGGTG
GCAAGGACAGCCAGCGCACCGCCGCTCCGGCTCCCCCGACTTTCTCTGCCACGCCAAAGAGGAGCCCATCTCCTTCTCCA
TCGCGGGCGGCGGCCAGGAGTAGAGGGGCAGGGAGGGGCAGGCGGATGTCGGCGCATGAGAGGCTCTACGAGGCGAGGAG
GGCGGAGGCGGAAGAGATGCGACGGCGCACGTACCTGCCCTACCGGCAGGGCGGGCTGCTGATCTTCGGTTGCATCGGCC
TCGGCAACCGCAGCTATGGCACCGCCGTGCACGGCCTTGCTCGGGGTCTCAA------CACCGCCACCGCCACGGCCGTC
TCTTCAAGGTCATGACAACACCTCGTATCCATGGACGCATCCGCTTCTCTGCTGGA--GCTGGAGCTGGATGGATGCTGA
TGTTATATGTAA-----------CAGCGTGAAGAAGTGCAAAGGAAATTGCATAGAAGATACCAGTAGTAGCAGCGTTCT
ATAGTTTCCTGTATGGATTTTGGGTTGGTGTAAACGGGCTTGTGTATCTA-----CGTACTAGTGATAATTAGTGGAAAA
AGAAA---------------------------------------------------------------------------
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-------------------------------------------------------
>chr4D_1_TraesCS4D01G144300
GGGCGGGTGGGAGGTATGTGGCCGCCTGCCACGCGGCCCCGACGGGGACGAGGCGCGCGTCCGTTTGGTGTCCGCCGCGA
CCCAAACCCGGCGCAAGTTTGCGCTCGAAATGGGTCGGCCCGGACACAAAACGAACAAGATGGGTCCTGGCCGTCGCGCG
CTGGACCGCCTCGTTTGTCTTTTTTACCTCAAACGAACGGGGTCGGACAGGATGGGGTCGCGCGGTAGAGTTGGCTTGAT
GGGACAATATAAACACACCGGCCGTGGGAAGTTAAAAGGGCGTTGTCATGAATGATGACGATGGATATAC---------G
TACGCACCTCACCTGTCGCCAACTTGGCAATGCAGATGCAGGACGAGGCGTGGCGAGCACGGGGAACTTGCCTCCCGATG
CACCGCGGCCCGGGTTTCCGCCCACCATCGCCGGAGCCGGCACAAAAGTGCGCGCCCCCCT-------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------CCC-----CCTGCCGGCTTCAAGCACGGGACATGCATGCATG------------AT
GTTTCGCTCTCCGCTTGTCGCCGTTGGAGGAAGTCGCCTGCAAAAATTCCTCACGATACTCACAAGAATCTGCCAAACTC
ATATATCAGCAGTGGCAACTTTCTAATTTTGTTTGCAAAACCGTGTCGTGTA----------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------TGATTGGTTGGATTATA---------CGTACTCCGTAAATGTCAGGCAGGGCGT
GGTAATATAATGGAAATTTTCTTGGATTCTGCCGGACCCATCTACTACTACTATAGATGAGGACCATGTTTCCCCTTACA
AAAACAAA-CAAAATTAGTCGGTGAGGACCATCCTGCATTTGAGCAGTTCAAGAGAACCAGATCCCATCGTATCAAGAAA
ACGTAATACAGTATTTG------TCTTCTCCCACAAAGCCCCTCGGCTTCCTTGTTATTAGCTTCACACTAACAGCAACA
GCGAAACATCCAAGGAAATCAACATCGTACGAACTAGAGGGGCTGAACCGTGAAACCACCAAGCACTTAAAAACTCCCAC
CA-CCCCCACCTCGCTTCCCACACTCCTCCCACCACTTCGCCGCGCGCACAACCCAACCCACCACCGCCTGGCCGCACCA
CAGCACGCGATGGCCGCCGACGCGCCTTCCGACGACCCGCTTGCCGGTGGCGGGGACAGCGCCTGCTCCACGCCGTTCGT
CAGCGCGCCCTCCAGCCCCACCCGCGACCCCTTCTCCGGCCACCACCACGCCGCGTGCTTCTTCAGCGCGCCGGCGAGCC
CCACCCGCGGCGCCAGCAACGAGTTTGCCTGCGGCGGCCTCGACTTTGACTTCGACTTCGACTTCTCGTCCCGCTTCCCG
TCGCCCTCCGCCGCCGCCATGTCGTCCGCCGACGAGCTCTTCCACAACGGCCAGATCCGCCCCGTCCGCCTCTCCGCGAT
GCTGCTCCAGCCGCACCAGCCTCACCTCGCCTCGCCTTCACAGGCCCCCGTGGAGGTGGAAGAGGGCGAGCGCGGCCGCT
TCAGGGGCCGGTCCGTGCACCGCAAGGCGCGCTCGCTCTCCCCATTCCGTGCCCACTGGAGGTCGCCGTCTCCCGCGCCG
CCGCCGGAGTCCGAGTCCGTCGAGCCGGCGGCCACGCCCCCGGCCTCGCGCTCCTCGTCGTCCTCGTCCACCGCTTCGTC
CGCGTCCTCCTCTTCCTCGAGGAGCTCCCGGCGTTGGGGCTTCATTAAGGATCTCCTCCACCGGAGCAAGTCAGACGGTG
GCAAGGACAGCCAGCGCACCGCCGCTCCGGCTCCCCCGACTTTCTCTGCCACGCCAAAGAGGAGCCCATCTCCTTCTCCA
TCGCGGGCGGCGGCCAGGAGTAGAGGGGCAGGGAGGGGCAGGCGGATGTCGGCGCATGAGAGGCTCTACGAGGCGAGGAG
GGCGGAGGCGGAAGAGATGCGACGGCGCACGTACCTGCCCTACCGGCAGGGCGGGCTGCTGATCTTCGGTTGCATCGGCC
TCGGCAACCGCAGCTATGGCACCGCCGTGCACGGCCTTGCTCGGGGTCTCAA------CACCGCCACCGCCACGGCCGTC
TCTTCAAGGTCATGACAACACCTCGTATCCATGGACGCATCCGCTTCTCTGCTGGA--GCTGGAGCTGGATGGATGCTGA
TGTTATATGTAA-----------CAGCGTGAAGAAGTGCAAAGGAAATTGCATAGAAGATACCAGTAGTAGCAGCGTTCT
ATAGTTTCCTGTATGGATTTTGGGTTGGTGTAAACGGGCTTGTGTATCTA-----CGTACTAGTGATAATTAGTGGAAAA
AGAAATT---AGTAGTAGTCTACTACTTGCTTCTCTTATCTTTA-TTGTGATGTGTGCAAGAGACCTCAAGACTGAAAAT
TTGCAGCT-----ATATTTGTGCCTTGAGCCTGGTCCTTGGGTTCCTTTGTGTAGCATCTCTTCTTTTGCCCTTTCTGTT
GATTGTTTGGTTTGGCATGTGTACTTCCTCCTGG--GGAAAGTAGAAATCTTTTCTTGCGTTGCAGGTTTTGCTGCAGGT
TT------------------------------------------------------------------------------
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-------------------------------------------------------TAGCTCAA-----------------
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-----------------------------------------------------GTAGTTCAGAGGCTTGTAGCATACACT
ACATTGCTGGAACTGGAACTCTGGAAATGGTTGCTACTTCTGTTTCTTTTCTTGGGTAACAAAATGGCGGCTATAGAATG
CCAGTGGGCTCACACCAAACTCTCCTTCAACGGTACTATCAGTCTAATTATCTGCAGTAC--------------------
-----GAGCAGCTGTTTTCCCTTTCTACAGGAAAACAAATACATATACTGCAGTTAATATTGCAAGATATAAATAAATGG
GTATTTCAAGGACACATCTAGATGTGTCCTAGTTATGTCACATCTAACCTGATGCCCATTATATATTGGGTCTTTTTTTT
TGTCCTAGCTATTTTTCTTTGTTCTTTGTTGCTGTCTTATTTGTGGGAGATTAGATGTGATATCCTTAAAAAACATCTAG
ATATGAATTAGACAAACTATAAATAAATCA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------GATAAAGAAAGACGGACAGATTTGTGACCCGAAAATCATACGGCAGC
TGCCTACAAGGATCATCAACTGCAACTGCATG------CTTGTGATCGTTAGCGTCCGTCACCTTTTC--TTTTCAGTTA
TATACTTCCTCCATTCCTAAATATAAGTTTTTCTAGAGGTTACACTATGGACTATATACAAAGTAAAATGAGTGAACCTA
CACTTTAAAATATGTCTATATACGTCCGTATGTAGTTTGTAGTGAAATCTCTATAGAGGCTTATATTTAGGAACGGAGGG
AGTATAAGCTACTGTATGTATGCTTTCGTTAACAGTAACGCCTTTGCCCCCTTCT
>chr4A_223
CGGTAGAGGTATGC------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TGAT
GGAACAATATAAACACACCGGCCGTGGGAAATCAAAAGGGCATTGTCATGAATGATGACGATGGATATAC---------G
TACGTACCTCACCTGGCGCCAAGTTGGCAATGAAGATGCAGGAGGAGGCGTGGCGAGCATGGGGAACTTGCATCCCGATG
CACCGCGGCCAGGGTTTCCGCCCACCATCGCCGGAGCCGTCACAAAAGTGCGCGCCCCCCT-------------------
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------------------------CCCCCTCTCCTGCCGGCTTCAAGCACGGGACATGCATGCATGCATGCATGCACGAT
GTTTCGCTCTCCGCTTGTCGCCGTTGGAGGAAGTCGCCTGCAAAAATTCCTCACGATACTCACAAGAATCTGCCAAACG-
--ATATCACCAGCGGCAACTTACTAATTTTGTTTGCAAAACCGTGTCGTGCA----------------------------
--------------------------------------------------------------------------------
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--------------------------TGATTGGTTGGGTTATA---------CGTACTCCGTAAATGACCGGCGGGGCGT
GGTA-----ATGGAAATTTTCTTGGATTCTGCCGGACCCATCTACTACTGCTCTAGATGAGGACCATGTTTCCCCTTACA
AAAACAAAACAAAATTAGTCGGTGAGGACCATCCTGCAGTTGAGCAGTTCAAGAGAACCAGATCCCATCGTATCAAGAAA
ACGTACTAATACAGTAAGTA-------CTCCCACAAAGCCCCTCAACTTCCTTGTTATTAGCTTCACACTAACAGTAACA
GCGAAACATCCAAGGAAATCAACATCGTACGAACTAGAGGGGCTGAACCGTGAAACCACCAAGCACTTAAAAACTCCCAC
CA-CCCCCACCTCACTTCCCACACTCCTCCCACCACTTCGCCGCACGCACAACCCAACCCACCACCGCCGGGCCGCACCA
CAGCACGCGATGGCCGCCGACGCACCTTCCGACGACCCGCTTGCCGGCGGCGGGGACAGCGCCTGCTCCACGCCGTTCGT
CAGCGCGCCCTCCAGCCCCACCCGCGACCCCTTCTCCGGCCACCACCACGCCGCGTGCTTCTTCAGCGCGCCGGCGAGCC
CCACCCGCGGCGCCAGCAACGAGTTCGCCTGCGGCGGCCTCGACTTTGACTTCGACTTCGACTTCTCGTCCCGCTTCCCG
TCGCCCTCCGCCGCCGCCATGTCGTCCGCCGACGAGCTCTTCCACAACGGCCAGATCCGCCCCGTCCGCCTCTCCGCGAT
GCTGCTCCAGCCGCACCAGCCTCACCTCGCCTCGCCTTCACAGGCCCCCGTGGTGGTGGAAGAGGGCGAGCGCGGCCGCT
TCAGGGGCCGCTCCGTGCACCGCAAGGCGCGCTCGCTCTCCCCATTCCGTGCCCACTGGAGGTCACCATCCGCCGCGCCG
CCGCCGGAGTCCGACTCCGTCGAGCCGGCGGCCACGCCCCCGGCCTCGCGCTCCTCGTCGTCCTCGTCCACCGCTTCGTC
CGCGTCCTTCTCTTCCTCGAGGAGCTCCCGGCGTTGGGGCTTCATTAAGGATCTCCTCCACCGGAGCAAGTCAGACGGCG
GCAAGGACAGCCAGCACCCTGCCGCTCCGGCTCCCCCGACTTTCTCTGCCACGCCAAAGAGGAGCCCATCTCCTTCTCCA
TCGCCGGCGGCGGCCAGGAGTAGAGGGGCAGGGAGGGGCAGGCGGAGGTCGGCGCATGAGAGGCTCTACGAGGCGAGGAG
GGCGGAGGCGGAAGAGATGCGACGGCGCACGTACCTGCCCTACCGGCAGGGCGGGCTGCTGCTCTTCGGTTGCATCGGCC
TCGGCAACCGCAGCTATGGCACCGCCGTGCACGGCCTTGCTCGGGGTCTCAG------CACCGCCACCGCCACGGCCGTC
TCTTCAAGGTCATGACAGCACCTCGTATCCATGGACGCATCC--------GCTGGA--GCTGGAGCTGGATGGATGCTGA
TGTTGTGTGTGGTCGGGGCAATGCAGCGTGAACAAGTGCAAAAGAAATTGCATAGAAGATACCACTAGTAGCAGCGTTCT
ATAGTTTCCTGTATGGATTTTGGGTTGGTGTAAACGGGCTTGTGTATCTACGTA--GTACTAGTGATAATTAGTGCAAAA
AGAAATTAGCAGTAGTAGTCTACTACTTGCTTCTCTTATCTCTGCTTGTGATGTGTGCAAGAGACCTGAAGACTGAAAAT
TTGCAGCT-----ATATTTGTGCCTTGAGTCTGGTCCTTGGGTTCCTTTGTGTAGCATCTCTTCTTTTGGCCTTTCTTTT
GATTGTTTGGTTTGGCATGTGTGCTTCCTCCTGCTAGGAAAGTAGAAATCTTTTCTTGCATTGCAGGTTTTGCTGCAGGT
TATAGCTCAAGGGCAAATCTGACAAATTTGACCTGTGGACGAAATCAAATCACTGTCCGTGAAATTATTGTTTCACGCGG
TTGATCTTTTTGTGTGACGCTCGACACGAAGGCGCCACACTACACTGTGCAACGCCTCACAGATAGGCGCTACACATCTG
GCCAACGTTGCACCTCAGACTGTACTGTATAGTGTGGCGCCTAGCTCTCAGGCAATGCACTAGTAGTTGTGCTACTAAAT
GAAGCAACCACTAGTGCAACGGCTAGAAGCTAAGCGTTACACTGTATAGTGTGGCGCCTATCTCTCAGGCGCTGCACATT
GACTTAGTAATTTTCGGATGTAGTGTGGCACCTTCGTGTCGGGCGTTACAAAAAAGTCAGCCGTGTGAAATAGTTTCATA
GGCAGTTCATTATGTGATTTGATTTCGTCTATAAGTTAAATTTGTCAATTTTGCCTAGCTCAA-----------------
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-----------------------------------------------------GTTGTTCGGATGCTTGTAGGATAC--T
ACATTGATGGAACCGGAG---------------------CTGTTTCTTTTCTTCGGTAACAAAATGGCGGCTATAGAATG
CCAGTGGGCTCACACCGAACTCTCCTTCAACGGTAGTATCAATCTAATTATCTGCAGCGCTTATTTTCTATTCATTGACG
AACAAGAGCAGCTGTTTTCCCTTTGTACAGGAAAACAAATACATATACAGCAGTTAATATTGCAAGA-------------
--------------------------------------------------------------------------------
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-----------------TATAAATAAATCA--------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------GATGAAGAAAGACGGACAGATTTGTCTCCCGAAAATCATACAGTAGC
TGCCTACAAGGATCATCAACTGCAACTGCATG------CTTGTGATCGTTAGCGCCCGTCACCTTTTTTTGCAGTTACAT
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr4B_237
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TGAT
GGAACAATATAAACACAGCGGCCGTGGGAAATCAAAAGGGCGTTGTTATGAATGATGACGATGGATATACTCATAGTACG
TACGCAGCTCACCTGGCGCCAAGTTGGCAATGCAGATGCAGGACGAGGCGTGGCGAGCATGGGGAACTTGCCTCCCGATG
CACCGCGGCCCGGGTTTCCGCCCACCATCGCCGGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCTCTTGCCGGCTTCAAGCATGGGA--------CATGCATGCATGCATGAT
GTTTCGCTCTCCGCTTGTCGCC----------------TGCAAAAATTCCTCACGATACTCACAAGAACCTGCCAAACTC
ATATATCACCAGTGGCAACTTACTAATTTTGTATGCAAAACCGTGCCGTGCATGAGGGCATGGCCAATGGGCCACGCTGG
ACGGGTGCTTCAGGCGCCACATCAACATGCTGAACGCCACCTCCAGCAAACATGCTGCTTGTAAGAGAGACGGACTCCTG
CAGAGAAGCTAGCCTCCTCCCTGACAAAAGCAGCGAGGTAGCTGCTCAGGCGACGCAGTGTGAGCTTTGTAGCTCTGCTT
AGTTCAGGACCACGGCTTGGAGATTGCATGTGTTGAAAGGTGGGTGAGAGAGAGAGAAAATAAGATGATGACATCAAGAA
AATAGCCTCCGTTGAGTGATTGTGGCACAAACCATAGCTCCATTCAAATTTATTTAGGTGGAAGAGGTGAGGCATCACCA
AGGTGATGCTCCTTTTGTACATGCCCTGATTGGTTGGATTATACTTACGTACCGTACTCCGTAAATGACAGGCAGGGCGT
GGTA-----ATGGAAATTTTCTTGGATTCTGCCGGACCCATCTACTACTACTCTAGATGAGGACCATGTTTCCCCTTACA
AAAACAAA-CAAAATTAGTCGGTGAGGACCATGCTGCAGTTGAGCAGTTCAAGAGAACCAGATCCCATCGTATCAAGAAA
ACGTAATAGAGTACTATTTGTCTTCTTCTCCGACAAAGCCCCTCAACTTCCTTGTTATTAGTTTCACACTAACAGCGACA
GCGAAACATCCAAGGAAATCAACATCGTACGAACTAGAGGGGCTGAACCGTGAAACCACCAAGCACTTGAAAACTCCCAC
CACCCCCCACCTCACTTCCCACACTCCTCCCACCACTTCGCCGCGCGCACAACCCAACCCACCACTGCCCGGCCGCACCA
CAGCACGCGATGGCCGCCGACACGCCTTCCGACGACCCGCTTTCCGGTGGCGGGGACAGCGCCTGCTCCACGCCGTTCGT
CAGCGCGCCCTCCAGCCCCACCCGCGACCCCTTCTCCGGCCACCACCACGCCGCGTGCTTCTTCAGCGCGCCGGCGAGCC
CCACCCGCGGCGCCAGCAAAGAGTTTGCCTGCGGCGGCCTCGACTTTGACTTCGACTTCGACTTCTCGTCCCGCTTCCCG
TCGCCCTCCGCCGCCGCCATGTCGTCCGCCGACGAGCTCTTCCACAACGGCCAGA---------TCCGCCTCTCCGCGAT
GCTGCTCCAGCCGCACCAGCCTCACCTCGCCTCGCCTTCACAGGCCCCCGTGGAGGTGGAAGAGGGCGAGCGCGGCCGCT
TCAGGGGCCGGTCCGTGCACCGCAAGGCGCGCTCGCTCTCCCCATTCCGTGCCCACTGGAGGTCACCATCTGCCGCGCCG
CCGCCGGAGTCCGAGTCCGTCGAGCCGGCGGCCACGCCCCCGGCCTCGCGCTCCTCGTCGTCCTCGTCCACCGCTTCGTC
CGCGTCCTCCTCTTCCTCCAGGAGCTCCCGGCGTTGGGGCTTCATTAAGGATCTCCTCCACCGGAGCAAGTCAGACGGCG
GCAAGGACAGCCAGCACCCTGCCGCTCCGGCTCCCCCGACTTTCTCTGCAACGCCAAAGAGGAGCCCATCTCCTTCTCCA
TCGCCGGCGGCGGCCAGATGTAGAGGGGCAGGGAGGGGCAGGCGGAGGTCGGCGCATGAGAGGCTCTACGAGGCGAGAAG
GGCGGAGGCGGAAGAGATGCGACGGCGCACGTACCTGCCCTACCGGCAGGGCGGGCTGCTGCTCTTCGGTTGCATCGGCC
TCGGCAACCGCAGCTATGGCACCGCCGTCCACGGCCTTGCTCGGGGTCTCAACACCGCCACCGCCACCGCCACGGCCGTC
TCTTCAAGGTCATGACAACACCTGGTATCCATGGACGCGTCC--------GCTTCTCCGCTGGAGCTGGATGGTTGCTGA
TGTTGTGTGTGGTCGGGGCAATGCAGCGTGAACAAGTGCAAAAGAAATTGCATAGAAGATACCAGTAGTAGCAGCGTTTT
ATAGTTTCCTGTATGGATTTTGGGTTGGTGCAAACGGGCTTGTGTATCTACAGTACGTACTAGTGATAATTAGTGGAAAA
AGAAATT---AGTAGTAGCCTACTACTTGCTTCTCTTATCTCTGCTTGTGATGTGTGCAAGAGACCTGAAGACTGAAAAT
TTGCAGCTTCCCTATATTTGTGCCTTGAGCCTGGTCCTTGGGTT----TGTGTAGCATATATTCTTTTGCCCTTTCCGTT
GATTGTTTGCTTTGGCATGTGTGCAGGT--------------------TCTTTTCTTGCATTGCAGGTTTTGCTGCTGGT
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------TTTTTTTCCGAAACGGAGGCAAAAG
ATTTGCTCCATCGATTAATTAAGCAGAAGAGAATTGCCCGGTTAATTAACGAAAAACCGGACGAAAACCGATACAGGGCT
TGCAACCTACAACCAAACCCAACACCTAACGACCACCAATACATCGCAAAGACACCCCAACAAGAGTAACTCGGCCGAAA
ACCACGGGCGCACCCAAATCAACGAAGACAAGTCAAGCCATAAGGACAACCCAAGAGACTGATAACCATCCATCAAGTAG
TTGCGGACGCCTTTTCTGTGACGCCACTCTTCTTTCCTTTGCTCGTGAGAGCCTCCTCCACAATTGCCTTGCCAGACCCA
GGGCTCATCCTCTCCAAACATTTGAGCAAGCTATGAAGCTCTATCTGAAAGAGAATCTCATTGACCTTGTCACGCACAGA
AACCTGCCCAACAATCACGTGCGAGTGGGTGCCCGCAACATCGGAATCTCCACGCTCCACAGGGGCGAGCTGTTGGTTGG
GCTCAGAAGGATCGGGCGCCAATGTACCAACCGCCTCAACATCATCAATCACAGGTATCACTGACACGATGGACTCAGGC
GTCTCCACTTGTCAGAGTTAGGTGCCAACACACATGTCTCATCAACCTCTCCACTCAAAGACGCCACATGCCCAATGGCC
ATAGATGAGGCAGTGATAGAACCAACCAAGTCTCCATTGTTCGCAAAGGCGGGCGACTGAGGTAGCGAGGGTGTCATGGC
CACCACCAAGGACTCCAATGAGCCCAGCTCCATCGGTAACACCATAGATGATTCCCCACAAAGCTCCTGCAACTCAGGCA
TAATCTGCATAATTGGAGCCACAACCTCGGAGATGACCCCACTCCCCGGGGAAGACGGCGTCGCATGTAGAGCACAAGGA
GAAAAATCTCCGAAGAGGCATTCAGCCTCCTCAATGGAACCAATCGGGAGCTCAGGCAACAAAGGCACAACCGACACAAC
CTGAAGTTTGGCAAGTGCGTCGTGAAGCTCAGTGCGAAACAACTCAATCTTCTGAAGGAGCTCCGTACGAAGCAAGGCAA
GCTGGGATTCAAAAGTAGAGTCCAAAAATACACTGACATTGGAATCCTTACAACACCCAGATTGGGACCTTGGCGGCACC
GACACACGCAACGACGAACGGCCCACGACCTCTGCCCAACTCCTAGTCAGCGAAGTACAAGCCTGGACGAACGGGGAGCG
GCTCGGCTGGCATGGAGCACGAGTGACCGAAGAGCCAACGCGAGCGACTGGAGAGCAATCTCGAGCAACCGGAGAGCGAT
CTGGAGCAACCGGAGAGCGAGCACAATAGAATCTCTCCCTATGACCAGGGCGACGACAGCGAATGCATCTGAATGGCCCA
TGGCATGCACTCACTTGGTGGCCACGCACAAGACAACGGTAGCATCTTCCTCGAGCCCAACGCTTGAAGGCGAGGCCACG
CTCGAGCCCTTCCCGCAACGGCTCGAGGGGAGTGCCTCCACCGGACCGGCGCCCCGACCAACATGCTCCCAGCCAGCCTC
GTTTTCAAGAGTGGCAGCGGCGGCAGAGAGGCCCTTGCAAGCAAACACTGAAGATGGAACAAACAGAGGAGACTCCAACT
TCTCTGGCGTCATCTCATCAGGAATGGCGGGCAGGGATGCCTGATTGGTCACTGCCATAGGCCATGGGAGGCGATGAGCG
CAAGTCCTACAGCCACCAATGGACGGGTCGGCCTTCCGGGAGGCGAGGGCAATGGCAGCTAGAGCAGCAGCGGACAAGGC
TGGAGTAGTCGGAGCAGCCCGGTTCGGCAGCGCGCTCACCTCGCTAGAGCACTTGGGAGCCCGTGGCGTCTGCGGGGCAA
GCTCAATGACATCTTCGTCGTGGTCATCGGCATCCTCATCGAGGGAGCTCCACGAAGGTCGCGCCATGCCCAAACTGTCA
AAAGAGCTTGAAACAGCCGACAGCCTCCCAACCCGCATGTCGGAGACGTGACCGTTGCCTCCAACCGCAACAACGGGTGG
CGTGGTAGGCGTTGGTGACCTCCGCGTGGACGGCAGCAGGGGCGAGCCCACCCATCCTCGCACGGTCAGGTCGGCCTTGC
GGGAGGCGAGGGAGGACGCGGCCAGGCCGTGCGAAGATGGCTGCGGCAGACGGGCGGGGGCAGGGACGGCGCCGGCAGCA
CGAGGCATCCGAGCGGCTGGAGGATCCAGCGAGGCCGGGGCGGCCTCCGTCGTGTAGTTCAGAGGCTTGTAGCATAC--T
ACATCGATGGAACTGGAACTCTGGAAATGGCTGCTACTTCTGTTTCTTCCCTTCGGTAACAAAATGGAGGCTATAGAATA
CCAGTGGGCTCCCACCAAACTCTCCTTAGAGT------------------------------------------------
---------AGCTGTTTTCCCTTTGTACAGGAAAACAAATACATATA--GCAGTTAATATTGCAAGA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TACTCCTTCTGTAAATTAATATAAAAGCATTTAAATCACTGAAGTAGTGATCTAAACACTCTT
ATATAAGTTTACGGAAGGAGTGTAAGTAAATCAGATAAAGAACGAAATCACTATGCACACGACACCTTGGCGGACGATGT
ATGCACGAAGCTGTGATCGATGGTACTAACCCATGGAGCCAAAGTGATGGACGGCTGCTAACATGTGTCGTGCATGAATC
GGCTGCCAAGATGTCGTCTGTGTAGCATTGCTCGATAAAGAAAGACGGACAGATTTGTGTTCCGAAAATGATACAGTAGC
TGTCTACAAGGATCATCAACTGCAACTGCAACAGCATTCTTGAGATCGTTAGCGTCCGTCTCCATTTTCTTTTTCAGTTA
TATACTACCTCTGTTTCTAAATGTAAGTTTTTCTAGAGATTACACTATGGACTATATACGGATCAAAATAAGTAAATCTA
CATTTTAAAATATGTCTATATATATCTGTATGTAGTTTGTAGTGGAATCTAAAAAAACA--TATATTTAGGAATGGAGGA
AGTAGAAGCCACTGTATGTATGCTTTCGTTAACAGTAACGCC-------------
>SNPs
S--SS-SS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
--S---------------------------S-S-----------------------------------------------
---------------S------S------------------------------------S--------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
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--------S------------S----------------------------S-----------------------------
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-------------------------------------------------------------------S------------
----SSSSS-------------------------------------------S---------------------------
--------------------------------------S-----------------------------------------
--------S----S-SS---------------------------SS----------------------------------
--------------------------------------------------------------------------------
-------------S-------------------------------------------------------S----------
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----------------------------------------------------------------S--S---S--------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
---------------S-S-S------------------------------------------------------------
----S-----------------------------------------S---------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
------------------------------------------SSSSSSSS------------------------------
----S-S---SS--------------------S---------S-------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S-S-----------------------S------------
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----------------------S----------S-------------------------S--------------------
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-----------------------------------------------------------------------------SS-
------S-----------------------S----------------------S--------------------------
-----------------------------------S-----S---------------SS---------------------
------------------------S-----------------------S------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------S-S---
-------------------------------------------------------------------S------------
------S----SS--S------S---------------S--------------------SS-SS-----S---S--S---
--S-------------------SS--S-----------------S-----SS-S-S-SSSS------------S-----S
----S----S--------------------------------SSSSSSSSSSSSS
>forward_1448
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--------------------------------------------------------------------CAGGCAGGGCGT
GGTAATAT------------------------------------------------------------------------
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-------------------------------------------------------
>reverse_2844
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CTTCTCTGCTGGAGCTGGAG-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>forward_2565
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CCATCTCCTTCTCCA
TCGCG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_6139
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------ACGAGCAGCTGTTTTCCCTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
