>input_sequence_56611
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-------------------------------------------CCTGTAAGCGCTGCCTCCTCTCTCTCATTTACTTTTG
TCGCATCGAGAGCTCTACCCGGAACGGCGGCGAGAAGGGACGGGCGGAGGAGAGATGCCGCACCGCGCGCGGCCGATGAC
GGGGCTGCTGGTGTTCATGGGCGTCAACCTCGTCCTCCTCAGCACCATCACCCCCGTCTACGACTTCGTCTGCTTCCACC
CCTACTGGGACCGCAGGGTA-----CCCCCACCCTCTCCCCGCTCCTTCTTCTCCGACTATATGCGGAAATGCCTGTGAT
CGTCGTTGGTTTAGACATACCCACTGGAAACTTCACTCGCCGTGCAATTCCTAGCTAGAACGAGTGCCTGTTTGGTTGGA
TTCTTGTTCTAGATTTGCCCATGCGCATCTGCACACCAGCTGTTTGTGGAAATGCCCGGGGGCGGTTAGATAGATAAGTT
GTTTGGACTGGATGTGCCTGGGG--------------------------------------------GCGCCTCTTCCTG
CCGTTCTTGAAAATTTTCCAGGGAAACTACATCTGC-----ACATGTTCCATGATAGGCCCATCCTTACTTCCCAACAAC
TTGCAATGATAGTACTAGGATCTTGATTTATTGAATACAATTTTGAATTC----TGTATGTAATGTGTAATTTCTTGTCC
AAATTTGCAGAGAGAACGCCGTCAAAGGGAACGTGAAGCACTGCAAGGCAATGGTTCTCTAGAAACTGCAAAATAGACTC
TACTAGGTAAATACATGCTTCC----------------------------------------------------------
---------------------------GGTGAATTAACTAGACTTCAACTACACTACACTGATATTCCACAAATAAATGC
CTTTTTTTCGAGGTGAGAAGCGCTCATTCCTCGCATACCATTTGGTGCCAGGAAACTGGGAGATTCCGTTGATGTATCTC
ATAGCAAATAGTCCAATAAGTAGCGACCTCACTTTCCATTGACAAAATATTTTACTTTTCATTCGTGCAGGTATCTGCTT
ACATT----ATTAGCTTATCACATCCTGGATTGTTCATTTACGTGGGATGAAGAAAGTTTGATGAAGTTGCGACCAGGCT
TTTCAGTGTCGGTGGGTCATTAGATCTTGTTTCGTGATGCTCCTGCAACGTGTCAGTCAATTCTCTGTAATGACAAACCA
AGGAACACCAGACGCTGTGAAATAAGTTCTTTAAACTACACTGTTATGAATCTTTTGTCAACTTCTTGTATTCATCTGGT
GTAACATAAGCAAATGAAATCATCTATTTAGTTCAGACCTGTTGTAATACAAGTAAATCAAATCATCTGGCC--------
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>chr4D_1_TraesCS4D01G125400
GCTCGATCGGCGGGTCTCGGTTTGGGGACTTCTCCTTGCTGAGATCTAGCAGCGGCGGCCTGGATCATCTAGATCCCAAC
AAGGATGGCGGCGACCCGTGCACGAGAGATGGAGGTCTTCGATCAGATCTGGGTGAAAACCTACTATTGGCTATTGCCAA
GGCTGGCGATGGCGACGTTGTCTGCATTGTTCCCTTCCTGAAGGCATCGCCGTGGAGAAGTTCAAGGCCACTCTCTGCTA
CCTCCGAGGGAAACCCTAGATCAGTAAATCGGATGACAGCGGCTCTCTGGTGTCGTTTCCCCCTTGGGGGCGTCATTCTT
GGAGGTGCACACGGGCTCGAGGGACCGGAGGACGGCGCCTTTGGTGGAGCGGTGCTTCATCTTACACATTGATGGTGGCG
GATCTCGGCGGCGTGGCGCTGTGGAGACTCGGCGTCTGATGCGTGGAGATGGACTCGCGCAGGTGGAGGAAGCTGTCTGG
CATCATGGTGGTGTTGATGGCAGAGAGGCCTGGCAAGGTGGGTGCTTCAGTTCTGCTCTGAGGATGGACCGAGGGATGAT
GGATGTGACGGCCCTTGCAGCGTGCGGTGCTCACTGGGAGTGTGCCAGACCGGTGTGGGACCCAATCCAGGTAGTGGCTT
GGATGAGACACCCGACTTTAGATGTTAGGCTTTGGTGCGATGTCTGTTTGATATTAGGCCCGGACATTCGGCACGCCTTC
ATCAATGGGATAGGAGTAGCAACGGTGTTGCCAAGATGGTGGCTTCAGACTTATTGATGTATCACCATGTATGATCTTTG
TGAATAATTAATAATATGGCTGCATGCATCGTCCAAATGCAGAGGCCGGGG-TACATCCTCTTTTCTAAAAAATAAAAAT
AAAAAAAT--TCTTTCTTTAGAGGGAGTATTTCTTTTTCTTTCTGTCGAGAGATATTATCAGACTGGTGACTGGTCAATG
ATCTGATGGTTTGGTTTGGTTTGGTTTATCCGACTCGGCCCCACCTGTAAGCGCTGCCTCCTCTCTCTCATTTACTTTTG
TCGCATCGAGAGCTCTACCCGGAACGGCGGCGAGAAGGGACGGGCGGAGGAGAGATGCCGCACCGCGCGCGGCCGATGAC
GGGGCTGCTGGTGTTCATGGGCGTCAACCTCGTCCTCCTCAGCACCATCACCCCCGTCTACGACTTCGTCTGCTTCCACC
CCTACTGGGACCGCAGGGTA-----CCCCCACCCTCTCCCCGCTCCTTCTTCTCCGACTATATGCGGAAATGCCTGTGAT
CGTCGTTGGTTTAGACATACCCACTGGAAACTTCACTCGCCGTGCAATTCCTAGCTAGAACGAGTGCCTGTTTGGTTGGA
TTCTTGTTCTAGATTTGCCCATGCGCATCTGCACACCAGCTGTTTGTGGAAATGCCCGGGGGCGGTTAGATAGATAAGTT
GTTTGGACTGGATGTGCCTGGGG--------------------------------------------GCGCCTCTTCCTG
CCGTTCTTGAAAATTTTCCAGGGAAACTACATCTGC-----ACATGTTCCATGATAGGCCCATCCTTACTTCCCAACAAC
TTGCAATGATAGTACTAGGATCTTGATTTATTGAATACAATTTTGAATTC----TGTATGTAATGTGTAATTTCTTGTCC
AAATTTGCAGAGAGAACGCCGTCAAAGGGAACGTGAAGCACTGCAAGGCAATGGTTCTCTAGAAACTGCAAAATAGACTC
TACTAGGTAAATACATGCTTCC----------------------------------------------------------
---------------------------GGTGAATTAACTAGACTTCAACTACACTACACTGATATTCCACAAATAAATGC
CTTTTTTTCGAGGTGAGAAGCGCTCATTCCTCGCATACCATTTGGTGCCAGGAAACTGGGAGATTCCGTTGATGTATCTC
ATAGCAAATAGTCCAATAAGTAGCGACCTCACTTTCCATTGACAAAATATTTTACTTTTCATTCGTGCAGGTATCTGCTT
ACATT----ATTAGCTTATCACATCCTGGATTGTTCATTTACGTGGGATGAAGAAAGTTTGATGAAGTTGCGACCAGGCT
TTTCAGTGTCGGTGGGTCATTAGATCTTGTTTCGTGATGCTCCTGCAACGTGTCAGTCAATTCTCTGTAATGACAAACCA
AGGAACACCAGACGCTGTGAAATAAGTTCTTTAAACTACACTGTTATGAATCTTTTGTCAACTTCTTGTATTCATCTGGT
GTAACATAAGCAAATGAAATCATCTATTTAGTTCAGACCTGTTGTAATACAAGTAAATCAAATCATCTGGCCTCACTATA
TACTATATGTAGTCTTGAAATTGTTGGTGAAGACCAATCATATCTTCATTCATCTAGTCTTCCCTCTATGTTTCTTCTCC
CTCAACCACATCAGCAGAGGCTTGCACCCTCATGAATGCACCGATGACCTCTAGGGCTTGCGCACCACCAACATCTTATG
TAAGT--------GTACAAGATGACAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTCAGCAACTAGTGAGTAGATTGTA
CAAATCTGTCCACGG-TTTTAGCTCAAGCTGAGAAGCATCTGGAAAGAGGGTTCCATTATGCACTCTGCACTGGTGGTG-
CTGCACATCTCCCTGTTTGAGCTAAAATGTATGTTTCACTCTAGAACTAGATCTCTCCTCTTCTTTGGGTTCGTTGGCTC
GGTGCTGCCTGCTCCTTTCTTCATCATCGCCACAAATTCTGAATAATCTATCCTCCCATCCTATATGTGCAAAAGTATCT
TTAGTTTCTTTGGATGCAATAAAGTAAAATAATCATCATCAACTGAGTAAACTGGCTATCAATTTGA-TTTATCAGGTCC
TATTTTTGG-GTGCAATGTAACTTCTGTGCGTCAGATCGCGTATGTGTAATGTATATACTCAATCTATACTTGTTGTTCC
TTACATTGTCAGTGTCAGCCTCTGAGATGATCTCCTTGATCTCT
>chr2D_1
GCTCGGCCGGCGGGTCTCAGTGAGGGAACCTCTCCTTGCTGAGATCTGGCAGCGGCGGCCTGGATCATCCAGATCCAGGC
AAGGATGGCGGCGGCCCGTGCACGAGAGATGGAGGTCTTCGATCAGATCTGGGTGAAAACCTGCTATTGGCTGTTGCCAA
GGCCGACGATGGCGACGCTGTCCGCATCGTTCCCTTCCTGAAGGCATCGCCGAGAAGAAGTTCAAGGCCACTCTCTGCTA
CCTCCGGGGGAAACCCTAGATCAGTAGATCGGATGACAGCGGCTCTCTGGTGTTGTTTCCCCCTTGGGGGCGTCATTCTT
GGAGGTGCACACAGGCTCGAGGGACCAGAGGATGGCGTCTTTGGTGGAGCGGTGCTTCATCTTACACATCGATGGTCGCG
GATCTCGGCGACGTGGCGCTGTGGAGATTCGGCGTCTGATGCGCGGAGATGGACTCGCGCAGGAGGAGGAAGCTGTCTGA
CGTCATGGTGGCGTTGATGGCAGAGAGGCCTGGCAAGGTCGGTGCTTCAGTTCTGCTCTGAGAATGGACCGAGGGATGAT
GGAGGTGACGGCCCTTGCAGCGTGCGGTGCTCACTGAGAGTGTGCCAGATCGGTGTGGGACCCAATCCAGGTAGTGGCTT
GGATGGGACACCCGGCTTTACATGTTAGGCTTTGGTGCGATGTCTGTTTGGTATTAGGCCCGGATATTCGGCACGCCTTC
ATCAAGGGGATAGGAGTAGCAACGGTGTTGCCGAGATGGTGGCTTCAGGCTAATTGATGTATCACCTTGTATGGTCTTTG
TGAATAATTAATAATATGGCTGCATACATCGTCCAGATGCAGAGGCCGGGGGTACAACCTCCTTTTCTTAAAAAAAATAA
TTGAAACATGTCTTTCTTT-------------------------------------------------------------
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>chr2D_1
GCTCGGCCGACGGATCTCGGTGGAGGGACTTCTCCTTGCTGTGATCTGGCAGCAGCGGCCTGGATCATCCAGATCCCGGC
AGGGATGGCAGCGGTCCTTGCACGAGAGATGGAGGTCTTCGATCAGATCTGGGTGAAAACCTGCTATTGGCTATTGCCAA
GGCCGGCGATGGCAACGCTGTCTATGTTGTTCCCTTCCTGAAGGCATCGCCGTGGAGAAGTTCAAGGCCACTCTCTGCTA
CCTCCGGGGGAAACTCTAGATCAGTAGATCGGATGACGGCGGCTCTCTGGTGTCGTTTCCCCCTTGGGGGCGTCATTCTT
GGAGGTGCACATGGGCTCGAGGGACCGGAGGACGGCGTCTTTGGTGGAGCGGTGCTTCATCTTACACATTGATGGTGGCG
GATTTCGGCGGTGTGGTGCTGTGGAGACTCGGCGTCTGATGCCCGAAGATGGACTCGCGCAGGAGGAGGAAGCTGTCGGG
CGTCATGGTGGCGTTGATGGCAGAGAGGCCTGGCAAGGTCGGTGCTTCAGTTCTGCTCTGAGGATGGACCGAAGGTTGAT
GGAGTTGACGACCCTTGCAGTGTGCGGTGCTCACTGGGAGTGTGCCAGACCGGTGTGGGACCCAATCCAGGTAGTGGCTT
GGCTGGGACACCCGGCTTTAGATGTTAGGCTTTGGTGCGATGTCTGTTTGGTATTAGGCCCGGACATTCGGTACACCTTC
ATCAAGGGGATAGGAGTAGCGACGGTGTTGCCAAGATGGAGGCTTCAGGCTTATTGATGTATCACCATGTATGGTCTTTG
TGAATAATTAATAATATGACTGCATGCATCGTCCGGATGCACAGGCGGGGGGTACATCCTTCTTTTCTAAAAAA------
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>chr2A_1
GCTCGGCCGACGGGTCTCGGTTGGGGGACTTCTCCTTGCTGAGATCTGGCAGCGGCGGCCTGGATCATCCAGATCCCGGC
AAGAATGGCGGCGGCCCATGCACGAGAGATGGAGGTCTTCGACCAGATCTGGGTGAAAACCTGCTATTGGTTATTGCCAA
GGCCGACGATGGCGACGATGTCCGCGTCGTTCCCTTCCTGAAGGCATCGCCGAGGAGAAGTTCAAGGCCACTCTCTGCTA
CCTCCGGGGAAAACCCTAGATTAGTAGATCGGATGACGGCGGCTCTCTGGTGTTGTTTCCCTCTTGGGGGCGTCATTTTT
GGAGGTGCACACGGGCTCGAGGGACCAGAGGACGGCGTCTTTGGTGGAGCAGTGCTTCATCTTACACATCGATGGTGGCG
GATCTCGGCGGTGTGGCGCTGTGGAGATTCGGCGTCTTATGCGTGGAGATGGACTCGCGCAGGAGGAGGAAGCTGTCTGG
CGTCATGGTGGCGTTGATGGCAGAGAGGCCTGGCAAGGTCAGTGCTTCAGTTCTGCTCTGAGGATGGACCGAGGGATGAT
GGAGGTGACGGCCCTTGCAGCGGGCGGTGCTCACTGGGAGTGTGCCAGATCGGTATGGGACCCAATCCAGGTAGTGGCTT
GGATGGGACACCCGGCTTTAGATGTTAGGCTTTGGTGCGATGTCTGTTTGGTATTAGGTCCGGACATTCGGCACGCCTTC
ATCAAGGGGATAGGAGTAGCAACGGTGTTGCCAAGATGGTGGCTTCGGACTTATTGATGTATCATCTTGTATGGTCTTTG
TAAATAATTAATAATATGGCTGCATGCATCGTCCAGATGCAGAGGCTGGGGGTACATCCTCCTTTTCTAAAAAA------
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>chr6D_1
GCTCGGCCGGCAGGTCTCGGTGGGGGGACTTCTCCTTGCTGAGATCTGGCAGCGGCGGCCTGGATCATCCAGTTCCCGGC
AAGGATGGCGGCGACCCGTGCACGAGAGATGGAGGTCTTCGATCAGATCTGGGTGAAAACCTGCTATTGGCTATTGCCAA
CGCCAGCGATGGCGACGTTGTTTGCGTCGTTCCCTTCCTGAAGGCATCGCCGTGGAGAAGTTCAAGGCCACTCTCTGCTA
CCTCCGGGGGAAGCCCTAAATCAGTAGATC-GATGACAGCGGCTCTCTGGTGTCGTTTCCCCCTTGCAGGCGTCATTCTT
GGAGGTGCACACGGGCTCGACGGACCGGAGGACGACGTCTTTGGTGGAGCGGTGCTTCATCTTACACATTGATGGTGACG
GATCTCGGCGGCGTGGCGCTGTGGAGACTCCGCGTCTGATGCGCTGAGATGAACTCGCGCAGGAGGAGGAAGCTGTATGG
CGTCACGGTGGCGTTGATGGCAGAGAGGCCTGGCAAGGTCGGTGCTTCAGTTCTGATCTGAGGATGGACCGAGGGATGAT
GGAGGTGACGGCTCTTGCAGCGTGCGGTGCGCATTAGGAGTGTGCCAGACCGGTGTGGGACCCAATCTAGGTAGTGGCTT
GGATGGGACACCCGAC-TTAGATGTTAGGCTTTGGTGTGATGTTTGTTTGGTATTAGGCCCGGACATTCGGCATGCCTTC
ATCAAGGGGATAGGAGTAGCAACGGTGTTGCCAAGATGATGGCTTCAGGCTTATTGATGTATCACCTTGTATGATCTTTG
TGAATAATAG-TAATATTGCTGCATGCATCGTCCAGATGCAGAGGCCGGGGATACATCCTCCTTTTCTAAAAAAAATAAG
AATGAAAGAAA---------------------------------------------------------------------
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>chr3D_1
GCTCGGCCGGC-GGTCTCGGTGGGGGGACTTCTCCTTGCTGAGATCTGGCAGCAGCGGCCTGGGTCATCCAGATCCCGGC
AAGGATGGCGGCGGCCCATGCACGAGAGATGGAGGTCTTCAATCAGATCTGGGTGAAAACCAGCTATTGGCTATTGCCAA
GGCCGACGATGGCGACGCTGTCTACGTCGTTCCCTTCCTGAAGGCATCACCGAGGAGAAGTTCAAGGCCACTCTCTGTTA
CCTCCGGGGGAAACCCTAGATCAGTAGATCGGATGACGGCGGCTCTTTGGTGTCGTTTCCCCCTTAGGGGCGTCATTCTT
GGAGGTGCACACAGGCTCGAGGGGCCAGAGGACGGCGTCTTTGGTGGAGCGGCGCTTCATCTTACACATTGATGGTGGCG
GATCTCGGCGGCGTGGCGCTATGGAGACTCGGCGTCTGATGCGCGGAGATGGACTCGCGCAGGAGGAGGAAGCTGTCTGG
CGTCATGGTGGCGTTGATGGCAGAGAGGCCTGGCAAGGTCGGTGCTTCAGTTCTGCTCTGAGGATGGACCGAGGGATGAT
GGAGGTGACGTGCCTTGCAGCGTGCGGTGCTCACTGGGAGTGTGCCAGACCGGTGTGGGACCCAATCCAGGTAGTGGCTT
AGATGGGACACCCGGCTTTAGATGTTAGGCTTTGGTGCAATGTCTGTTTGGTTTTAGGCCCGGACATTTGGCACGCCTTC
ATCAAGGGGATAGGAGTAGCAACGGTGTTGCCAAGATGGTGGCTTCAGGCTTATTGATGTATCACCTTGTATGGTCTTTG
TGAATAATTAATAATACGGTTGCATGCATCGTCCAGATGCAGAGGCCGGGGATACATCCTTCTTTTTTTAAAAAT-----
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>chr3D_1
GCTCGGCCGGCCGGTTTCGGTGGGGGGACTTCTCCTTGCTGTTATCTGGCCGCGGTGGCCTGGATCATTCAGATCCCGGC
AGGGATGGCGGCGGCCCGTGCACGAGAGATGGAGGTCTTCGAACAGATCTGGGTGAAAACCTACTATTGGCTATTGCCAA
GGCCGGCGACGGCGACGCTCTCTGCGTCGTTCCCTTCCTGAAGGCATCGCCGTGAAGAAATTCAAGGCCACTCTCTGCTA
CCTCCGGGGGAAACCCTAGATCAGTAGATCGGATGACGGCGGCTCTCTGGTGTCATTTCTCCCTTGGGGGCATCATTCTT
GGAGGTGCACATGGGTTCGAGGGACCGGAAGACGGCGTCTTTGATGGAGCGGTGCTTCATCTTACACATTGATGATGGCG
GATCTCGGTGGCGTGGCGCTGTAGAGACTCGGCGTCTGATGCGCGGAGATGGACTCGCGCAGGAGGAGGAAGCTGTCTGG
CGTCATGGTGGCGTTGATGGCAGAGAGGCCTGGCAAGGTCGGTGCATCAGTTCTGCTCTGAGGATGGACCGATGGAAGAT
GGAGGTGACGGCCCTTGCAGCGTGCGGTGCTCACTGTGAGTGTGCCAGACCGGTGTGGGACCCATTCCAGGTAGTGGCTT
GGATGGGACACCCGGCTTGAGATGTTAGGTTTTGGTGCGATGTCTGTTTGGTATTAGGCCCGGACATTCGGCACACCTTC
ATCAAGGGGATAGGAGTAGCAACAGCGTTGCCAAGTTGGTGGCTTCAGGCTTATTGATGTATCACCTTGTATGGTCTTTG
TGAATAATTAATAATATGGTTGCATGCATCGTCCAGATGCAGAGGCCGG---TACATCCTCCATTTCCAAAAAAAAATAA
CTTAAAAAA-----------------------------------------------------------------------
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>chr5A_8
-------CGGCGGGTCTCGGTGGGGGGACTTCTCTTTGCTGAGATCTGGCAACGGCGGCCTGGATCATCCAGATCTCGGC
AAGGATGGCGGCGGCCCGTGCACGAGATATGGAGGTCTTCGATCAGATCTGGGTGAAAACCTGCTATTGGCTATTGCTAA
GACCGACGATGACGACGTTGTCCGCGTCGTTCCTTTCCTGAAGGCATCGCCGAGGAGAAGTTCAAGGCCACTCTCTGCTA
CCTCCGGGGGAAACCCTAGATCAGTAGATCGGATGACGGCGGCTCTCTGATGTCGTTTCCCCCTTGGGGGCATCATTTTT
GGAGGTGCACACGGGCTCAAGGGACCAGAGGACGGCGTCTTTGGTGGAGCGGTGCTTCATCTTACACATCGATGGTGGCG
GAACTTGGCGGCGTGGCGCTGTGGAGATTCGGCGTCTGATGCGTGGAGATGGACTCGCGCAGGAGGAGGAAGTTGTCTGG
CATCATGGTGGCGTTGATGGCAAAGAGGCCTGGCAAGGTCGGTGCTTCAGTTCTGCTCTGACGATGGACCGAGGGATGAT
GGAGGTGACTGCCCTTGCAGCGTGCGGTGCTCACTGGGAGTGTGCCAGATCGGCGTGGGACCCAATCCAGGTAGTGGCTT
GGATGAGACACCCGGCTTTAGATGTTAGGCTTTGATGCGGTGTCTGTTTGGTATTAGGCCCGGACATTCGGGACGCCTTC
ATCAAGGGGATAGGAGTAGCAACGATGTTGCCAAGATGGTGGTTTTAGGCTTATTGATGTATTACCTTATATGGTCTTTG
TGAATAATTAATAATATGGCTGCATGCATTGTCCAGATGCAAAGGCCGAGGGTACATCCTCCTTTTCTAGAAAAAAA---
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>chr5A_8
-------CGGCGGGTCTCGGTGGGGGGACTTCTCCTTGCTGAGATCTGGTAGCGGCGGCCTGGATCATCCACATCCCGGC
AAGGATGGCGGCGGCCCGTGCACGAGAGATGGAGGTCTTCGATCAGATCTGGGTGAAAACCTGCTGTTGGCTATTGCCAA
GGCCGACGATGGCGACGCTGTCCGCGTCGTTCCCTTCCTGAAGGCATCGCCGAGGAGAAGTTCAAGGACACTCTCTGCTA
CCTTCGGGGAAAACCCTAGATCAGTAGATCGGATGACGGCGGCTCTCTAGTGTCATTTCCCCCTTGGGGGCGTCATTTTT
GGAGGTGCACACATGCTCGAGGGACCAGAGGATGGCGTCTTTGGTGGAGCGGTGCTTCATCTTACACATCGATGGTGGCG
GATCTCGGTGGCGTGGCGCTGTGGAGATTCGGCGTCTGATGCGCGGAGATGGACTCGCCTAGGAGGAGGAAGCTGTCTGG
CGTCATGGTGGCGTTGATGGCAGAGAGGCCTGGCAAGGTCGGTGCTTCAGTTCTGCTCTGAGGATGGACCGAGGAATGAT
GGAGGTGACGGCCCTTGCAGCGTGCGGTGCTCACTGGGAGTGTGCCAGATCGGTGTGGGACCCAATCCAGGTAGTGGCTT
GGATGAGACACCCGGTTTTAGATGTTAGGCTTTGCTGCGATGTCTATTTGGTATTAGACCCGGACATTCGTCACGCCTTC
ATCAAGGGAATAGGATTAGCAACGGTGTTGCCAAGATGGCGGCTTCAGGCTTATTGATGTATCACCTTGTATTTTCTTTG
TGAATAATTAATAATACGGCTGCATGCATCGTCCAGATGCAGAGGCCGGGA-TATATCCTCCTTTCTAAAAAAAATAAAA
AA------------------------------------------------------------------------------
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>chr2D_9
--------GGCGGGTCTCGGTGGGGGGACTTCTCCTTGCTGAGATCTGGCAGCAGCGGCCTGGATCATCCAGATCCCGGC
AAGGATGGCGGCGGCCCGTGCACGAGAGATGGAGGTCTTCGATCAGATCTGGGTGAAAACCTGCTATTGGCTATTGCCAA
GGCCGACGATGGGGACGCTGTCCGCGTCGTTCCCTTCCTGAAGGCATCGCCGAGGAGAAGTTCAAGGCCACTCTCTGCTA
CCTCCGGGGGAAACCCTAAATCAGTAGATCGGATGACGGCGGCTCTCTGGTGTCATTTCCCCCTTGGGGGCGTCATTCTT
GGAGGTGCACACAGGCTCGAGGGACCAGAGGACGTCGTCTTTGGTGGAGCGGTGCTTCATCTTACACATCGATGGTGGCG
GATCTCGGCGGCGTGGCGCTGTGGAGATTCGGCGTGTGATGCGCGGAGATGGACTCGCGCAGGAGGAGGACGCTGTCTGG
CGTCATGGTGGCGTTGATGGCAGAGAGGCCTGACAAGGTCGGTGCTTCAGTTCTGCTCTGAGGATGGACCAAGGGATGAT
GGAGGTGACGGCCCTTGCAGCGTGCGGTGCTCACTGGGAGTGTGCCAGATCGGTGTGGGACCCAATCCAGGTAGTGGCTT
GGATGGGACACCCGGCTTTAGATATTAGGCTTTGGTGTGATGTCTGTTTGGTATTAGGCCCGGACATTCTGCACGCCTTC
ATCAAGGGGATAGGAGTAGCAACGGTGTTGCCAAGATGGTGGCTTGAGGCTTATTGATGTATCACCTTGTATGGTCTTTG
TGAATAATTAATAATATAGCTGCATGCATCGTCCAGATGCAGAGGCCGGGGGTACATCCTCCTTTTTCTAAAAAAAAA--
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>chr4B_969
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-----------TGGTTTGGTTTGGTTTATCCGACTCGGCCCCACGTGTAAGCGCTGCCTCCTCTCGCTCATTTACTTTTC
TCGCATCGAGAGCTCTCCCCGGAACGGCGGTGAGAAGGGACGGGCGGAGGAAAGATGCCGCACCGCGCGCGGCCGATGAC
GGGGCTGCTGGTGTTCATGGGCGTCAACCTCGTCCTCCTCAGCACCATCACCCCCGTCTACGACTTCGTCTGCTTCCACC
CCTACTGGGACCGCAGGGTA-----CCCCCACCCTTTCCCCGCTCATTCTTCTCCGACTGTATGCGGAAATGCCTGTGAT
CGTCGTTGGTTGAGACATACCCACTGGAAACTTCACTCGACGTGCAATTCCTAGCCAGAACGAGTGCCTGTTTGGTTGGA
TTCTTGTTCTAGATTTGCTTATGCGCATCTGCACACCAGCTGTTTGTGGAAATGCCTAGGAGCGGTTCGATAGATGAGTT
GTTTGGACTGGATGTGCTGTTTGACCAAAATGATTACA-CTTGAGGAGT-CCTTGCCCAGTTGCATTGCGCCTCTTCCAG
CCGTTCTGGAAAATTTTCCAGGGAAACTGCATCTGC-----ACATGTTCCATGATAGACCCATCCTTGCTTCCCAACAAC
TGGCAATGAGAGTACTAGGATCTTGATTTATTGGATACAATTTTGAATTTTGTGTGTGTGTAATGTGTAATTT-TTGTCC
AAATTTGCAGAGAGAACGCCGTCAAAGGGAACGTGAAGCACTGCAAGGCAATGGTTCTCTAGAAACTGCAAAATAAACTC
TACTAGGTAAATACATGCTTCCACACTTAAGAGA-----AAAAAAAATGCTTTTCCCC-TTCATGCATCTCCTTGTACTC
ATAGTATGGCATCATAGGATGATTTCCGGTGAATTAACTAAACTTCAACTACACTACACTGATATTCCATGAATAAATGC
CTTTTT-TCGAGGTGAGAAGCGCTCGTTCCTCGCATACCATTTGGTGGCAGGAAACTGGGAGATTTCACTGATGTATCCC
ATAGCAAATAGTCCAATAAGTGGCCACCTCATTTTCCATTGACGCAATCTTTTTCTTTTCATTCGTGCAGGTATCTGCTT
ACATTATTTATTAGCTTATCACATCCTGGATTGTTCATTTACGTGTGATGGAGAAAGTT---TGAAGTTGCGACCAGGTT
TTTCAGTGTCGATGCATCATTAGATCTTGTTTCGTGATGCTCCTGCAATGTGTGAG----TTCTCTGTAATGACAAACTG
AGGAACACCAGACGCAGTGAAATAATTTCTTTAAACTACACTGTTATG------TTATCAACTTCTTGTATTGATCTGGT
GTTACATAAGCAAAGGAAATCATCTATTTAGTTCAGACCTGTTGTAATACAAGTAAATCAAATCATCTGGCCCCACTATA
TACTATATGTAGTCTTGAAATTGTTGGTGAAGGCCAATCATATCTTCATCTAGTCTC----CCCTCTATGTTTCTTCTCC
CTCAACCACATCAGCAGAGGCTTGCACCCTCATGAATGCACCGATGACCTCTAGGGCTTGAGCACCACCAACATCTTATG
TAAGT--------CTACAAGATGACAAAAATGTGCAGGTGGGAGACAAATCCATCTTTCTTCCCCAAATTCATGGGTATG
TATGTGGATTCCAATCCAATTGATA-------------------------------------------------------
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----------------------------------------------------CTCCTCAGCAACTAGTAAGTAGATTATA
CAAATCTGTCCATGATTTTGAGCTCATGCTGAGAAGCATCTGGAAAGAGGGTTCCATTATGCACTCTGCACTGGTGGTGA
CTGCACATCTCCTTGTTTGAGCTAAA-TGCCTGTTTCACTCTAGAACTAGATCTCTCCTCTTCTTTGGGTTCGTTGGCTC
GGTGCTGCCTGCTCCTTTCTTCATCATCGCCACGAATTCTGAATAATCTATCCTCCCATCCTATATGTGCAA--------
-------------------TAAAGTAAATTAATCATCGTCAACTGAGTAAACTGGCTATCAATTTAATTTTATCAGGTCC
TATTTTTTGTGTGCAATTTAACTTCCGTGCATCAGATTGCGTATGTGTAATG--TATACTCAATTTATACTTGCTGT--C
TTACATTGTCAGTGTCAGCCTCTGAGATGATCTCCTTGATCTCT
>chr4A_1138
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--------------------GCGTCAACCTCGTCCTCCTCAGCACCATCACCCCCGTCTACGACTTCGTCTGCTTCCACC
CCTACTGGGACCGCAGGGTACGGTACCCCCACCCTCTCCCCGCTCCTTCTTCTCCGACTGTATGCGGAAATGCCTGTGAT
CGTCGTTGGTTGAGACATATCCACTGCAAACTTCAATCACCGTGTAATTCCTAGCTAGAACGAGTGCCTGTTTGGTTGGA
GTCTTGTTCTAGATTTGCCCCTGCGCATCTGCACATCAGCTGTTTGTGGAAATGCCTGGGAGCGGTTCGATAGATAAGTT
GTTTGGACTGGATGTGCTGTTGGACCAAAGCGATTACGCCTTGAGGAGTGCCTTGCCCAGTTGAATTGCGCCACTTAATG
TCGTTCTGTAAATTCTTCCAGGGAAACTACATCTGCACTGCACATGTTCCATGATAGACCCATCCTTGCTTCCCAACAAC
TTGCAATGAGAGTACTAGGATCTTGATTTATTGGATACAATTTTCAATTTC--GTGTGTGTAATGTGTAATTTCTTGTCC
AAATTTGCAGAGAGAACGCCGTCAAAGGGAACGTGAAGCACTGCAAGGCAATGGTTCTCTAGAAACTGCAAAATAAACTC
TACTAGGTAAATACATGCTTCCACACTTTAAAAAAAATGAAAAAAAATGCTTTTCCCCTTTCATGCATCTCCTTGTACTC
ATAGTATGGCATCATAGAACGATTTCCGGTGAATTAACTAGACTTTAACTACAC--CACTGATATTCGGCGAATAAATGG
ATTTTC-TCGAGGTGAGAAGCGCTCATTCCTCGCAAACCATTTGGTGGCAGGAACCTGGGAGATTCCGCTGATGCATCCC
ATAGCAAATTGTCCAATAAGTAGCGACCTCACTTTCCATTGACACAATATTTTTCTTTTCATTTGCGCAGGTATCTGCTT
ACATTATT----AGCTTATCACATCCTGGATTGTTCATTTACTTGGGATGGAGTAAGTTTGATGAAGTTGCGACCAGGCT
TTTCAGTGTCGGTGGGTCATTAGATCTTGTTTCGTGATGCTCCTGCAATGCA----TCAATTCTCTGTAATGACAAACCA
AGGAACACCAGACGCAGTGAAATAATTTCTTTAAACTACACTGTTATGAATCTTTTGTCAACTTATTGTATTCATCTGGT
GTAACATAAGCAAATGAAATCATCTATTTAGTTCAGACCTGTTGTAATACAAGTAAATCAATTCATCTGGCCTCACTATA
TACCATATGTAGTCTTGAAATTGTTGGTGAAGACCAATCATATCTTCATTCATCTAGT----CCTCTATGTTTCTTCTCC
ATCAACCACATCAGCAGAGGCTTGCACCCTCATGAATGCACCGATGACCTCTAGGGCTTGCGCACCACCAACATCTTATG
TAAGTGTGTAAGTGTACAAGATGACAAAAATGTGCAGGTGGGAGACAACTCCATCTTTCTTCCCCAAATTCATGGGTATG
TATGTGGATTCCAATCCAAGTGGTA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CTCCTCAGCAACTAGTAAGTAGATTGTA
CAAATCTGTCCACGATTTTGAGCTCATGCTGAGAAGCATCTGGAAAGAGGGTTCCATTATGCACTCTGCACTGGTGGTGA
CTGCACATCTCCTTGTTTGAGCTAAAATGCCTGTTTCACTCTAGAACTAGATCTCTCCTCTTCTTTGGGTTCGTTGGCTC
GGTGCTGCCTGCTCCTTTCTTCATCATCGCCACGAATTCTGAATAATCTATCCTCCCATCCTATATGTGCAA--------
-------------------TAAAATAAATTAATCATTGTCAACTGAGTAAACTGGCTATCAATTTGATTTTATCAGGTCC
TATTTTTTGTGTGCAATTTAACTTCCGTGCATCAGATTGCGTATGTGTAATGC--ATACTCAATTTATACTTGCTAT--C
TTACATTGTCAGTGTCAGCCTCTGAGATGATCTCCTTGATCTCT
>SNPs
-----SS---------------S------------------------S---------------------S-------SS-
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
------S-------------------S-----------------------------------------------------
-------------------------------------S------------------------------------------
---------------------------------------------------------------S----------------
-----------S---------------------------S----------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
-----S--------------------------------------------------------------------------
-----------------------------------S-------------------------S-----------S-----S
--S----S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---------------------------------S--------------------S-------------S
----------------S-------------S--------------------S----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------S---S------S------------
-----------------SSSS-----------------------------------------------------------
-------S-------------------------------------------------S---------S------------
---------S-----------------------S---------------S-------S----------------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
------S----------------------------------------S--------------------S---------S-
--------------------------------------------S--------S--------------------------
--------------------------------------------------S-----------------------------
------------------------------------------------S----S--------------------------
---------------S---------S------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------SSS-------------------
--------------------------------------------------------------------------------
------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-----------
--------------S----S------S-----------------------------------------------------
------------S----------------SS-------------------------------------------------
---------------------------------S--------------------------------------SSSSSSSS
SSSSSSSSSSSSSSSSSSS---------S--------S------------------------------------------
-------S---------S-------S----S------S--------------SS----------S--------S---SS-
--------------------------------------------
>forward_492
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------------------------------------------------------------------------CTGTCTGG
CATCATGGTGGT--------------------------------------------------------------------
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--------------------------------------------
>reverse_1578
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---------------------------------------------------------GCCCATCCTTACTTCCCAACA--
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------
>forward_564
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--------------------------------------------------------------------------------
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----------------------------------------------------------------TGGACCGAGGGATGAT
GGAT----------------------------------------------------------------------------
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--------------------------------------------
>reverse_1927
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------TTCGAGGTGAGAAGCGCTC-------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>forward_1461
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-TTTGGACTGGATGTGCCTGG-----------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>reverse_3288
--------------------------------------------------------------------------------
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-------GGGTGCAATGTAACTTCTGTGC---------------------------------------------------
--------------------------------------------
