>input_sequence_56606
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-----------------------------------------ATGGACTATGTTCGCCTTCGAGCTGTGTACAAAAATTGG
CGGTACATCACTATTTGCCCACGCGGTCATGGCATCACTGATCCTCGTTTCCACCCGCGTCGTTGGATGATGTTGCCCGA
GGGTCATGGTCTCCACCCTGGCCACTACAAGCTCGGGGGGTATGTTCGCTTTCTCAACCTCGACACGGGGACCTTGGTCC
GTGTCAAGCTCCCGTTGTTCAAGAACCACTGCATTCTTGACTCAATCAATGGCCTCCTCCTCCTCC------AAAGGGAC
GAGGACTCCGCCATTCTCCTCCTCAACCCTTTCACTAGTGACATCACTGAGCTCCCACCACTCTCCACCCTCCTCACACA
AGTGGTGACACAGTCTGAGATCACATTTGGCCTATGCTACTGCTATCTCCTCAAACATGGCATGTCTACTGCTGTCTTCT
GCAACAATGACGGTACCACCACCGTCATGATTATCTTGCATCATTTATCACAGTTGGCCTATGCTAACTCCCAAGACAAG
CAATGGATCTTGGCGAGCTGGGATCTTCCGTTAAACATGAAAGCTTTGTCATGTCAAGGCAAGTTATACTTGGTGCAGTA
TCCTGCATCTCATGGTTCACAAGTTCTTCAGATTGACCCACCCTTGCAGGTTGGTTCGCCGCCACCACGGCCAAAGTTAA
TTGCCACATGCCCGACAAATAAACTTGTCTATGGTTATCATCTGGTAGAATGTGACTCGAACATCCTTCTTGTTTGCCAT
ACTGATGATTCTCGATCACCCATTTTGATTTACAACCTTGAGA--ATATTATTGTGGGAAGGTTTACCCCGGTAAGAAGC
ATTGGAAAGCATGCCCTCTTCCTCGGAGAAAGGAGTCTGAGTGTCTCCTCTAAGGCATTGCCTACTATCATTGCTGAAAC
TATCATCTACAAAGGACCAAGGGAGCATCGCTTTGTGCAATACCACCTCAGTACCGCCAAGTGGTCCGAACCAGTTGACG
AATGTAGCATCTATGGATATAGCCCCGGTCCTCATAGCCTCATCCAACATATCATTACTTGTTGCATTCGTCGTGCTTGG
TACGTAATTTCTTTTTATCTCACATTATTCTCTTGTTATCAACTTATCATAATTGTTCATCGTATCATCTTGTTTAGAAG
CTAGGCTAATATGTTCTCATTTTGTCCTTATAGGAACAAAGGGCTGATATATTCTGAAGCGGAAGCGTATAAGCCTGGAT
GGCTCACCTAG---------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G182000
TTGGGTTTAATTAGTCCCCAATTAATACATTTTAAGGCTAATGATGATTGGTAATTAGCAGTGGATGTTGGTTCTTGCAC
CCCTCTTTGGACATGCCCTTTACTCTTC-AACTTCCGCCTTTACTCTTTGAATACACCCCTTTTGTTGGCGTCTCTGGTA
CTCATAGAAATGGATACATCATCAATGAATATTTACACATTGTTAGTTACTGATGAATCATTGTTAGTTACTGATTTCAT
TAAAACTAATTACATTAATAACATAACAAAGGGATAATATCCTACTCGGGCACGTGTGGCGTGCTATTCGCACAAACCCC
AAGGCGATTGCATCCTTTCCTTCCAACCCGCACCCCCAAAGAGTGAGAGCAGTTGCCCTCCTCTCTCCCCTTCCCTCCCA
CCCCCTCAGACCTCTCTCAGGACCGATCAAGTTAGTTGTTATTTGTGAATTTATACTCCTTTATATTCCCAGAGGTATTT
TGTCTTATCTCCCAAATTATTTTCTAGCTGGAATCTTAAATTTGGTGGAATTAGATGCATGGAAACCCTAGCTCTAGTGT
TTTCTTTTAAATATAATATTTTTCATTGTATTTAGCATTGATGAGTAGTATAATGGGTTGGAAACATAATTTTCTTGGAT
GCATAGTTAGTTTGTAGGTTTGGGTTATGTGGAATGCTTCTCCAATTAGACAATAATTATTTTACAAAAATATATTTATA
TTTGAATGTTTTAATTTCGAATGTTAATTTTATGTTGATTGCTTCTCCATTGTGATAGGGTTCACGTGAATTTAATGAGC
GTCAGTACTTAGTGAACCGAACAACAACTCCAGAACATAGTGATGCCTTCTGCCATGGCTGCGTGCCCAAGGAAGCGCCG
CCACTCTATGGTGGTAACGTCAGATGATGTCATGGTGGTACCCTACAACTCTACATGAGCGTCATCACTGCATGCCGATT
TGCTTCTCCTGGTAGCCTGGCACCTTCTGGATGGTGACTTGATGGACTATGTTCGCCTTCGAGCTGTGTACAAAAATTGG
CGGTACATCACTATTTGCCCACGCGGTCATGGCATCACTGATCCTCGTTTCCACCCGCGTCGTTGGATGATGTTGCCCGA
GGGTCATGGTCTCCACCCTGGCCACTACAAGCTCGGGGGGTATGTTCGCTTTCTCAACCTCGACACGGGGACCTTGGTCC
GTGTCAAGCTCCCGTTGTTCAAGAACCACTGCATTCTTGACTCAATCAATGGCCTCCTCCTCCTCC------AAAGGGAC
GAGGACTCCGCCATTCTCCTCCTCAACCCTTTCACTAGTGACATCACTGAGCTCCCACCACTCTCCACCCTCCTCACACA
AGTGGTGACACAGTCTGAGATCACATTTGGCCTATGCTACTGCTATCTCCTCAAACATGGCATGTCTACTGCTGTCTTCT
GCAACAATGACGGTACCACCACCGTCATGATTATCTTGCATCATTTATCACAGTTGGCCTATGCTAACTCCCAAGACAAG
CAATGGATCTTGGCGAGCTGGGATCTTCCGTTAAACATGAAAGCTTTGTCATGTCAAGGCAAGTTATACTTGGTGCAGTA
TCCTGCATCTCATGGTTCACAAGTTCTTCAGATTGACCCACCCTTGCAGGTTGGTTCGCCGCCACCACGGCCAAAGTTAA
TTGCCACATGCCCGACAAATAAACTTGTCTATGGTTATCATCTGGTAGAATGTGACTCGAACATCCTTCTTGTTTGCCAT
ACTGATGATTCTCGATCACCCATTTTGATTTACAACCTTGAGA--ATATTATTGTGGGAAGGTTTACCCCGGTAAGAAGC
ATTGGAAAGCATGCCCTCTTCCTCGGAGAAAGGAGTCTGAGTGTCTCCTCTAAGGCATTGCCTACTATCATTGCTGAAAC
TATCATCTACAAAGGACCAAGGGAGCATCGCTTTGTGCAATACCACCTCAGTACCGCCAAGTGGTCCGAACCAGTTGACG
AATGTAGCATCTATGGATATAGCCCCGGTCCTCATAGCCTCATCCAACATATCATTACTTGTTGCATTCGTCGTGCTTGG
TACGTAATTTCTTTTTATCTCACATTATTCTCTTGTTATCAACTTATCATAATTGTTCATCGTATCATCTTGTTTAGAAG
CTAGGCTAATATGTTCTCATTTTGTCCTTATAGGAACAAAGGGCTGATATATTCTGAAGCGGAAGCGTATAAGCCTGGAT
GGCTCACCTAGAAGGTTAAGAGAAAGTTTCGCCATTGGGTACAGTTTTCTCACAATTAATCCCCATT-------ATAGTG
TCCTTGATCTACTCCCGTCTGACAAAATTTAATAGTCATAATCATCCAATTCAGTAGCAGCTCCATGAGATTGTTCTTGT
GGTACTTATTATAGTTGCCTTTCAAGATATATCTGGTAACCA--------TTGAATTAGGATGCCCGGTTTCTTCATATT
CTCTCATGCAACTAAGTATTCGTGTATCCCTTTCTATGTTGGTACATTT-ATGTCTTTGTATGCAATTTGACCAAGATAC
TACTATACCACAATTTGAGTTGTAATCATGTGAAAGTTTTCTTTCTCTGGGTGTTATTTGGAACATTGTGGTATTGTTGT
CACACGTATTTATATTTCTCACTAGGTGCTTTCCATAACTTGTGTGGGGGATAAATTCATGTAACTTATCGTGCTAGAAA
CCATG---TAGTATTGTTAGCTCTTCGACCAGAACAAAGCG--------AAATGATTGTGCTCGATGAAACAATGTAATT
GTAGATATTCTGTTGGTTAAT-----------------------------------TTTCCTACTGGGCTGAAGGTATTG
TAGCTGCTGACCTTCTTTTATGTCTAGATGCCTTATTTTTTA-TGCTTGATAACTTTGGTATAGATTGGATGATGTCTCA
TCTGACACCTCCTTTTGTATTTG----------TTTTGCAGGCTTAAAGTGATGCAAGAAGCATGTCAATGGATTTCAAT
TCTCCTGGGTTTTACACAGATGAATGAACAAGAAAGGAGAGCTTCATTATTTTAAAAATACCTTTGTCGTCGTTTCCTTG
TTACAACAACTCATTCCCGCGGTTCCTATCATTACTTTGAGACAAATAAATGAACTTTAATACTTGTAGCCATGTAGCGC
ACAAACAAACTGAGCACTCATGAAAGATATAAGTACATTGCTTGCTATATATGAATATCCTACATGATCATGAGGTGTAT
TATTGGACATAGGGAATTATTACGACAAATAAGCATAGAAATGA
>chr3B_1
TTGGGTTTAATTAGGCCCCAATTAATACATTTTAAGGCTAATGATGATTTCTAATTAGCAATCGATGTTGGTTCTTGCAC
CCCTCTTTGGACATACCCTTTACTCTTCGAACTTCCGCCTTTACTCTTTGAATACACCCCTTTTGTTGGCGTCTCTGGTA
CTCATAGAAATGGATACATCATCAATGAAGATTTACACACTTTTAGTTACTGAT---------------------TTCAT
TAAAGCTAATTACATTAATAACATAACAAAGGGATAGTATCCCACTCGGGCACGAGTGGCATGCTACTTGCACAAACCCC
GAGGCAATTGCATCCTTTCCTTTCAACCCGCAC-CCCAAAGAGTGAGAGCAATTGCCCTCCGCTCTCCCCTTCCCTCCCA
CCCTCTCAGACCTCTCTCAGGACCGATCAAGTTATTTGTTATTTGTGAATTTCTACTCCTTTATATTCCCAGAGGTATTT
TGTCTTATCTCCCAAATTATTTTCTAGCTGGAATCTTAAATTTGGTGGAATTAGATACATGGAAACCCTAGCTCTAGCGT
TTTGTTTTAAATATAATATTGTTCATTGTATTTAGCATTAATGAGTAGTATAATGGGTAGGAAACATAATTTGGTTGGAT
GCATAGTCAATTTGTAGGTTTGGGTTATGTGGAATGCTTCTCCAATTAGACAATAATTATTTTACAAAAATATATTTATA
TTTGAATGTTATAATTTTGAATGTTAATTTTATGTTGATTGCTTCTCCATCGTGACAGGGTTCATGTGAATTTCATGAGC
ATTAGTACTTAGTGAACCGAACAACAACTCCAGAACATAGTGATGCCTTCTGCCATGGCTGCGTGCCCAAGGAAACGCCG
CCACTCT------------------------ATGGTGGTACCCTACAACTCTCCATGGGCGTCATCACTGCATGCCGATT
TGCTTCTGCTGGTAGCTTGGCGCCTTCTGGATGGTGACTTGATGGACTATGTTCGCCTTCGAGCTGTGTGCAAAAATTGG
CGGTACGCCACTATTTGCCCACGCGGTCGTGGCATCACCGATTCTCGTTTCCACCCGCGCCGTTGGATGATGTTGCCCGA
GGGTCACGGTCTCCACCCTGGCCACTACAAGCTCGGGGGGTTTGTTCGCTTTCTCAACCTTGACACGGGGACATTGGTCC
GTGTCAAGCTCCCGTTGTTCAAGAACCACTGCATTCTTGACTCAGTCAACGGCCTCCTCCTCCTCC------AGAGGGAC
GAGGACTCTGCCATTCTCCTCCTCAACCCTTTCACTAGTGACATCACTGAGCTCCCACCACTCTCCACCCTCCTCACGCA
AGTGGTGAAACAGTCTGAGATCACAGTTGGCCTATGCTACTGCTATCTCCTCAAACATGGCATGTCTACTGCTGTCTTCT
GCAACAATGACGGTACCACCACCGTCATGATTATCTTGCATCATTTATCACAGTTGGCCTATGCTACCTCCCAAGACAAG
CAATGGATCATGGCGAGCTGGGATCTTCCGTTAAACATGAAAGCTTTGTCATGTCAAGGCAAGTTATACTTGGTGCAGTA
TCCTGCATCTCATGGTTCACAGGTTCTTCAGATTGACCCACCCTTGCAGGTTGGTTCGCCGCCACCACGGCCAAAGTTAA
TTGCCACATGCCCAACAAATAAACTTGTCTATGGTTATCATCTGGTAGAATGTGACTCGAACATCCTTCTTGTTTGCCAT
ACCGATGATTCTCGATCACCCATTTTGATTTACAACCTTGAGA--ATATTACTGCGGGAAGGTTTACCCCGGTAAGAAGC
ATTGGAAAGCATGCCCTCTTCCTCGGAGAAAGGAGTCTGAGTGTCTCCTCTAAGGCATTGCCTACTATCATGGCTGAAAC
TGTCGTCTACAAAGAACCAAGGGAGCATCGCTTTGTGCAATACCACCTCGGTACTGGCAATTGGTCTGAACCAGTTGACG
AATGTGGCATCTATGGATATAGCCCCGGTCCTCATAGCCTCATCCAACATATCATTACTTGTTGCATTCGTCGTGCTTGG
TACGTAATTTCTTTTTATCTCGCATTATTCTCTTGTTATCAACTTATCATAATTGTTCATCGTATCATCTTGTTTAGAAG
CCACGCTAATATGTTCTCATTTTGTCCTTATAGGAACAAAGGGTTGATATATTCTGAAGCGGAAGCGTATAAGCCTGGAT
GGCTCACCTGGAAGGTTAAGAGAAAGTTTCGCCATTGGGTACAGTTTTCTCACAATTAATCCCCATTCTACTCTATAGTG
TCCTTGATCTACTCCCGTCTGACAAAATTTAATAGTCATAATCACCCAATTCAGTAGCTGCTTGATGAGATTGTTCTTGT
GGTACTTATTATAGTTGCCTTTCCAGATATATTTGGTAACCA--------TTGAATTAGGATGCCCGGTTTCTTCATATT
GTCTCATGCAACTAAGTATTCGTGTATCCCCTTCTATGTTGGTACATTT-ATGTCTTTGTATGCAATTTGACCAAGATAC
TACTATATCACAATTTGAGTTGTAATCATGTGAAAGCTTTCTTTCTCTGGGTGTTATTTGGAACAT-GTGCTATTGTTGC
CAAAAGTATTTATATTTCTCACTAGGTGCTTTCCATAACTTGTGTGGGGGATAAATTCCTGTAACTTATCATGCTAGAAA
CCATG---TAGTATTGTTAGCTCTTCGACCAGAACAAAGCG--------GAATGATTGTGCTCGATGAAACAATGTAATT
GTAGATATTCTGTTGGTTAAT-----------------------------------T-----------------------
------------TTCTTTTATGTCTAGATGCCTTATTTTTTTGTGCTTGATAACTTTGGTATAGATTGTATGATGTCTCA
CCTGACACCTCCTTTTGTATTTTTTTAAATTTTTTTTGCAGTCTTAAAGTGATGCAA-AAGCATGTCAATGGATTTCAAT
TCTCCTGGGTTTTACACAGATGAATGAACAAGAGAGGAGAGCTTAGTTATTTTAAAAATACCTTTGTCACCGTTTCCTTG
TTACAACAACTCATTCCCGCGGTGCCTATCGTTACTTTGAGACAAATAAATGAACTTTGATACTTGTAGCCATGTAGCGC
ACAAACAAACTGTGCACTCATGAAAGATATAAGTACATTGCTTGCTATATATGAATATCCTACATGATCATGAAGTGTAT
TATTGGACATGGGGAATTATTACAACAAATAAGCATAGAAAT--
>chr7D_1063
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-----------------------CGGTCATGACATCACTGATCCCCGTTTCCACCCGCATCGCTGGATGATGTTGCCTGA
GGGTCACGGTCTCCACCCTGGCCACTACAAGCTTGGGGGGTTTGTTCGCTTTCTCAGCCTTGACATGGGGACCTTGGTCC
GTGTTAAGCTCCCATTGTTCAAGAACCACTACATTCTTGACTCAGTCAACGGCCTCCTCCTCCTCCTCCTCTAGAGGGAC
AAGGACCCCGCCATTCTCCTCCTCAACCCTTTCACTAGTGGCATCATTGACCTCCCACCACTCTCCACTCTCCACACACA
AGTGCTGAAATAGTTTGAGATCACAGTTGGTCTACGCTACTGCTATCTCCTCAAACATGGCATGTCTACTGTTGTCTTCT
ACAGTAATGATGGTACCACAATTG----------------TCATTTATCACAGTTGGCATATGCTACCTCCCAAGACAAG
CAGTGGACCATGGCTAGCTGGGATATTCTGTTAAACATGAAAGCTTTATCATGTCAAGGCAAGTTATACTTGGTGTAGTA
TCCTGCATCTCCTGGTTCACAGGTTCTTTAGATTGACCCACCCTTGCAGGCTGGTTCACCGCCACTACAGCCAAAG----
TTGCCACATGCTCGACAAATAAACTGGCCTATGGTTATCATCTAGTCGAATGTGACTCGAACATCCTTCTTGTTTACCAT
ACTGATGATTCTCGATCACCCATTTTGGTTTACAGTCTTGAGAATATATTACCGCGGGAAGGTTTACCCCGGTAAGAAGC
ATTGGAAAGCATGCCCTCTTCCTCGGAGAAAGGAGTCTGAGTGTCTCCTCTAAGGCGTTGCCTACTATCATGGCTGAAAC
TATCGTCTACAAAGAACCAAGGGAGCATCTCTTTGTGCAATACCACCTCAGTAGTGGCAATTGGTCTGAACCAGTTGACG
AATGTGGCATCTATGGCTATAGCCCTAGTCCTC-TAGCCTCATCCAACATATCATTACTTGTTGCATTCGTCGTGCTTGG
TACATAAGTCCTTTTTGTCTCACATTATTCTCTTGTTACCAACTTATCATCATTGTTCATTGTATCAGCTTATTTACAAG
CCAAACTGATATGTTCTCATTGTGTCCTTGTAGGAACAAAGGGCTGATCTATTCTGAAGCGAAAGCGTATAAGCCTGGAT
GGATCACTTGGATGGCTAAGACAAAGTTTCGCCATTGGGTTAAGTTTGCCCACAATTAATCCACATACTACTCTATAGTG
TCCTTGATCTACTCCCGTCCGACAAAATTTAATAGTCATAATCACCCAATTCAGTAGCAGCTCCATGACATTGTTCTTGT
GGTACTTATTACAGTTTCCTTTCCAGATATATCTAGTAAACCAGCTTAATTTGAATTAGGATGCCCGGTTTCTTCATATT
CTCTCATGCAACTAAGTATCCATGTATCCCCTTCTTTGTAGGTACATTTCATGTCTTTGTATATAATTTGACCAAGATAC
TACTATATCACAATTTGAGATGTAGTCATGTGAAAGCTTT-TTTCCCTGGGTGTTCTTTGGAACAT-GTGCTATTGTTGT
CACAAGTATTTATATTTCTCACTAGGTGCTTTCCACAACTTGTGTGGAGGATAATTTCTTGTAACTTCTCTTGCTAGAAA
CCATGCACTAGTATTGTTAGCTCTTCCACCAGAAGTTCAGAACAAAGCTAAATGATTGGGCTCGATGAAACAATGTGATT
GTAGATATTATGCTGGTTAATTTTCCTGCTGTACTGGAGATATTGTAGCTACTGACT-----------------------
------------TTCTTTTATGTCTAGATGCCTCATTATTTA-TGCTTAAT-----------------------------
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>SNPs
--------------S----------------------------------SS---------S-S-----------------
--------------S-----------------------------------------------------------------
-----------------------------S---------S-S------------SSSSSSSSSSSSSSSSSSSSS-----
----S-------------------------------S-----S-----------S-----S-----S-S-----------
S----S----------------S----------S-----------------S---------S------------------
---S------------------------------S-----------------S---------------------------
--------------------------------------------------------S--------------------S--
---S----------------S------------------S------------------S-------------SS------
-------S-S----------------------------------------------------------------------
----------S------S--------------------------------S----S--------S--------S------
S-S-----------------------------------------------------------------------S-----
-------SSSSSSSSSSSSSSSSSSSSSSSS---------------------S----S----------------------
-------S--------S----S-----------------------------------------------S----------
------SS------------------------------------------------------------------------
------S----------------------------------S------------------S-------------------
--------------------------------------------S----S-----------------------S------
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--------S----------------S------------------------------------------------------
------------------------------------------------------------------S-------------
---------S----------------------------------------------------------------------
---------------------S----------------------------------------------------------
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---------------------------------------------------S--S-------------------------
-----------------------------------------------------------------------S--------
----S---------S---------------------------------------S-S---S-----S-------------
-----S--------------------------------------------------------------------------
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-S-S----------------------------------------------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------S-----------------------------------
-----------------------S--------------------------------------------------------
------------------------------S-------------------------------------------------
-------S----------------------------S-----------------------------S---S---------
----S-----------------------------------------------------S-----------S---------
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---------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS--------------------------------------------------------S-----------
S---------------------S------------------S---------------S----------------------
---------------------------------S----------SS----------------------SS----------
-----------------------S------S---------------------------S---------------------
------------S------------------------------------------------------------S------
----------S------------S------------------SS
>forward_372
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--------------------------------CCCCCAAAGAGTGAGAGCAG----------------------------
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>reverse_1245
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--------------------------------------------ATCAATGGCCTCCTCCTCCT----------------
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>forward_1030
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--------------------------------------------------GTTCGCCTTCGAGCTGTGTA----------
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>reverse_1935
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--------------GACCAAGGGAGCATCGCTTT----------------------------------------------
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>forward_1127
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--------------------------------------------------------------------GATGTTGCCCGA
GGGTCAT-------------------------------------------------------------------------
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>reverse_2365
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--------------------------------------------TCCAATTCAGTAGCAGCTCCA---------------
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