>input_sequence_56603
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----------------------------------------------GTATATATGGGACGCACGTACGTGCCATCCTTCA
CAGCATCCGAAC-----------AAGCTTAAGCAGAGCTGCCCAACGAGCAACCACACCACCGGCCGAA------ATGGG
GCAGTCCAAGCCAGTCCTGGTCCTCCTCCTGCTCGCCGTCTCCACTGCGGCGAGCAGCGGCAAACCGCTGCTCACTAAGA
TCACCAAAGGCGGCGCGGCGACGGCCCTGTACACGGCGCCGCTCAGCGCCGGCCGCCCGCTGGTCCTCGACCTCTCCGCC
CCGGCCATCACGACGCCGTGCAGCGGGCAGACGACGACCGTCACGCTCTCGGCCAACTCTACCGACGGCAGCAACCCGCT
ATCCCTGGTCTCCTTGGCTGCCACTGCCACCTGCGCGGCGGCACCGTCCGGTGCCGTCGGCGTCGCGGGGCTCGCGCGCT
CCAGCGCCTCGTTCCCGGCTCAGGTGGCGAGCACGCAAAAGGTGGCCAACTCGTTCGCTCTCTGCCTTCCAAGCGACGGC
AGGACCGGGTTCACCGGCAACGGCGTGGGTGCGGCCATCTTCGGCGGCGGCCCGTTCTTTCTCGCGCCCCCAGCGGACCG
GCCGTCCATCACGACGCTCCTCTCCGACGGGGTTCCGCTGCGCCAGCCCTTCGCCGGTAACCCCGGCTACTTCGTCTCAG
CCACCAACGGCATCGCCATAGACGGGACGCGCGTGGCCGTGTCCGGCACCGGCGCGCTCGTGGTCGGCCTCTCCACCACG
ATCTCCTACGCGCAGCTCCGTGCCGACGTCTACCGTCCCTTCATCACGGCCTTCGACCGCGCCATGGGCTCCAGCGCCAA
GGTCGCGGCCGTGGCGCCGTTCGAGCTGTGCTATGACTCGTCGAAGCTGGCGCCGACGCGGTTCGGGTACCTGGTGCCGA
ACGTGGACTTGATGCTGGAGGGCGGGACGAACTGGACGGTGGTGGGCGGCAACTCCATGGCGCAGGTGAACAGCGGCACG
GCGTGCTTCGCGTTCGTCCGGTCTGGGAGCA------CGGACGCGACGCCGGCGCTGGTGATCGGAGGGTTCCAGATGGA
GAACAAGCTGGTGGTGCTGGACAATGGCAAGAAGACGCTCAGCTTCACTCAGAACCTCCCGGGCATGGGGTTCTCCTGCA
GCAACTTCAATTTCACCAAGGCCGCCTAGCGATCCACATTGTTTAAGTCGTTTGTTGCATGGTGTGGGTTGGGTGTGTGA
CACTCTCACACAAGAACTTTATGTTGGAATA-------------------------------------------------
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------------------------------------------
>chr3B_1_TraesCS3B01G042800
ATATAGTTGTAAAAAAACATAAATAGAATAATAGAATGAAAATTCACATGCATGTATGGTTTTTTTTATAATGGTTGCAT
ATTAAGGTGCGCATTGTTTTCATGCATGTTGCATGCTGAAGTAACATACTTACATGTTTAGAGGAATAGATCAGTGAGAG
CTAGAGCTTTGCTTCATCTATGAAAGTTACTTACAAAATTGATGTTATGTAATGAGGTGGCAACTGTTCATTGGGAGGGG
GGGGGAGTACATTAGGAAAAACCGAAGTTGCTATGTACTCCCTCCGGTTCTTTTTACTTTGCATATTAGGTTTGTCTGAA
GTCAATCTCATCCAACTTTGACCGAGTTTATATAAAAAATTATTGACATTTACATAACAACACCAATATCATTAGATTCA
TCTCGGAATATATTTTTATATTATATTTATTAGATATTATAGATGCTAATAATTTCTAATATAAATTTGGTAAAACTTAG
CTAAGTTTGACTTTCGGCAAATTCAATGTGCAGAGTAAAAAGGACCGGAGGGAGTACTAGTATTTCATAGCTTTTGATAG
GTAGCTCACAGTGCTGAATAGCAAGAGCCATACCCTGCATTAGCGCATGCAATTCCGCTTCCAAAGCTTCAATGCAACTA
AAGATGCCTCGGTATGCTGAAAAAATAACACCCATTATATCTCCTCAACACCATACCTGCGGCTGCCGAACCATTAGACT
GCAAGAAGGATCCATCAACAGACAGGGCCACCCGATGAGGCTGGCTATTTAGCTATAGAATATCTCGCACGGCGTAGCTG
GACTTTGAACAAGAATCATATGCGACTTATTGACTATGAATCTGTGATCGACAACGTAGAAAAATGGAAC------TCTA
GTTCGTTAAGCAACATTGACCACGCATGGATGGATCATCATTGATCGAGATAACATTTGACCACGCAATGGCAGGCATGC
ACTGGTTGGACCATCTGAATAGTCTCCAGATCGAGGGAGCTCCACAGTATATATGGGACGCACGTACGTGCCATCCTTCA
CAGCATCCGAAC-----------AAGCTTAAGCAGAGCTGCCCAACGAGCAACCACACCACCGGCCGAA------ATGGG
GCAGTCCAAGCCAGTCCTGGTCCTCCTCCTGCTCGCCGTCTCCACTGCGGCGAGCAGCGGCAAACCGCTGCTCACTAAGA
TCACCAAAGGCGGCGCGGCGACGGCCCTGTACACGGCGCCGCTCAGCGCCGGCCGCCCGCTGGTCCTCGACCTCTCCGCC
CCGGCCATCACGACGCCGTGCAGCGGGCAGACGACGACCGTCACGCTCTCGGCCAACTCTACCGACGGCAGCAACCCGCT
ATCCCTGGTCTCCTTGGCTGCCACTGCCACCTGCGCGGCGGCACCGTCCGGTGCCGTCGGCGTCGCGGGGCTCGCGCGCT
CCAGCGCCTCGTTCCCGGCTCAGGTGGCGAGCACGCAAAAGGTGGCCAACTCGTTCGCTCTCTGCCTTCCAAGCGACGGC
AGGACCGGGTTCACCGGCAACGGCGTGGGTGCGGCCATCTTCGGCGGCGGCCCGTTCTTTCTCGCGCCCCCAGCGGACCG
GCCGTCCATCACGACGCTCCTCTCCGACGGGGTTCCGCTGCGCCAGCCCTTCGCCGGTAACCCCGGCTACTTCGTCTCAG
CCACCAACGGCATCGCCATAGACGGGACGCGCGTGGCCGTGTCCGGCACCGGCGCGCTCGTGGTCGGCCTCTCCACCACG
ATCTCCTACGCGCAGCTCCGTGCCGACGTCTACCGTCCCTTCATCACGGCCTTCGACCGCGCCATGGGCTCCAGCGCCAA
GGTCGCGGCCGTGGCGCCGTTCGAGCTGTGCTATGACTCGTCGAAGCTGGCGCCGACGCGGTTCGGGTACCTGGTGCCGA
ACGTGGACTTGATGCTGGAGGGCGGGACGAACTGGACGGTGGTGGGCGGCAACTCCATGGCGCAGGTGAACAGCGGCACG
GCGTGCTTCGCGTTCGTCCGGTCTGGGAGCA------CGGACGCGACGCCGGCGCTGGTGATCGGAGGGTTCCAGATGGA
GAACAAGCTGGTGGTGCTGGACAATGGCAAGAAGACGCTCAGCTTCACTCAGAACCTCCCGGGCATGGGGTTCTCCTGCA
GCAACTTCAATTTCACCAAGGCCGCCTAGCGATCCACATTGTTTAAGTCGTTTGTTGCATGGTGTGGGTTGGGTGTGTGA
CACTCTCACACAAGAACTTTATGTTGGAATAATAAATTTAAAATAAAATAAATCAAATTGAAGTGACAACTTTGTTTACA
TGCGGCAACCTCAGTTTCATTATGGCTTCCTAGTGATCCCCGTGGCTTCCCGGTGCCCTTGTCGC---TCTCACGGAAGT
A--TCGGTCGAAGAT-GCAGTACGGATCAAGCCGGATCTACTCGTCGACAGAACTGTCATCGCCATCAATATCCGCCTTC
TCCAC-CTT----CGGTGGCAATCCAGCCATGCCACGGACTGCCCGATTCTGCTCTCGGGCGAGGGCTTGCGTGTTCCTC
CACTGACTTTTCTTCATAACGCGGGCGTGGATGGCTTCCTCCTCTGTG---------ACCGCCCATGTCGCCGCATCAGC
CGCCTTCGT------------CGCCGCGACACGGGCCTCGGC------GACCCTTATCCTCTGCTTCCCACGGCGGGCCA
CTCGTTCCCGGTGGGAGTCATAGTCTGG-CGACCGGTGATGGGGAGGGAGAGGGTTTCTG---GCTACCGGGACCGCGAT
GATCCAGCCCCAGTGGA-CCC-GATTGCCTCCTCCAACCCACACAGGATGACACCCCTG-----TCCGTCCGTCAACCGG
ACGTTGTCCTCCCGGGAGCGGCAGAGTGCAATGCGGACTGACATTGCCTCCTCCAACCCGCACAGGATGACACCCATGTC
CGTCCGTCAGCCGGACGCTGTCCTCCCGGGAGCGGCAGAGTGCAATGCGGACTGATATTGCCTCCTCCAACCCGCACAGG
ATGACACCCCTGTCGACGGATCTAGACTGGTCAGAGTTCGATCCACTGCCTGCCATGTCGGAGAAGGCCGAAAACCGTCG
GAGGTGAGCTCGAGTGGTGGAGGAGAGTGGAGTGAAGTGGCTAGGGTTTGCTCCGGCATGCGGATCGGGACGAATATATG
AG--GTCGGGTGGGCCAGCATGGGTCGGGTCCGACGTGGCGGGTGTGTCCGGGCGCCCCCAATATCCGCCCCATACTTGT
GTTGGATGTGAGGGGTGCCGGTCAGTCCGGACGTCTGAGACC
>chr3B_844
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-------------------------------------------GTGACCGATAACGTAGAAAATTGGAACACTACTTCTA
GTTCGTTAAGCAACATTGACCACGCATG---------------------------------------------------C
ATTGGTTGGACCGTCTACGTGC--------------------------ATATATAGAACCCACGTACGTGCCTTCATTCA
CAGCAAGCATCTTA------CCAAAGTGTAAGCTGACCTCCCCAACGACG-----CAACACCGGCC------GAAATGTG
GCAGTCCAAGCCAGCCCTGGTCTTCCTCCTGCTCGCCGTCTCCACGGCGGCGACCGTCGGCAAGCCGCTGCTCACGAAGG
TCACCAAGGGCAGCGCGTCCACGGCCCTCTACACGGCGCCCCTCAGCGCCGGCCGGCCGCTCGTCCTCGACCTCTCCGCC
CCGGCCATCACGACGCCGTGCAGCGGGCAGACGACGACTGTGACGCTCTCCGCCAACTCCACCGATGGCAGCAACCCGCT
GTCCCCGGTCTCCTTCGCTGCCACCGCCACCTGCGCGGCGGCCCCCTCAGGCGCCGTCGGCGTCGCGGGGCTCGCGCGCT
CCAGCGCCTCGT-CCCGGCCCAGGTGGCCAGCACGCAGAAGGTGGCCAACTCGTTCGCGCTCTGCCTCCCGAGCGC----
--------------------CGGCGTAGGCGCGGCCATCTTCGGCGGCGGCCCGTTCTTCCTCGCGCCCCCGGCGGACCG
GCCGGCCATCACCACGCTCCTCTCCGACGGCGTCCCGCTCCGCCAGCCCTTCTCCGGGAACCCCGGCTACTTCGTCTCAG
CCACCAACGGCATCGCCATCGACGGGACGCGCGTGGCCGTCTCCGGCTCCGGCGCGCTCGTGGTCGGCCTCTCCACCACG
ATCCCCTACGCGCAGCTCCGCAGCGACGTGTACCGTCCCTTCATCACGGCCTTCGACCGCGCCATGGGCTCGAGCGCGAA
GGTCGCGGCCGTGACGCCGTTCGAGCTGTGCTACGACTCGTCCAAGCTGTCGCCGACGTTGTCGGGCTACTCCGTGCCCC
AGGTGGACGTGATGCTGGAGGGCGGGACGAACTGGACGGTGGTGGGCGGCAACTCCATGGCGCAGGTGAACAGCGGCACG
GCGTGCTTCGCGTTCATCCAGGCGGGAGGCGGCACGGGGGGCGCGGCGCCGGCGGTGGTGATCGGGGGATTCCAGATGGA
GAACAAGCTGGTGGTGCTCGACAATGACAAGAAGACGCTCAGCTTCACCCCGTACCTCCCGGCCAGGGGCTTCTCCTGCA
GCAACTTCAACTTCACCAGGGCGGGGTAGAGATGCACA------------------------------------------
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>chr3D_1001
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----------------------------------------------GTATATATAGGACGCACGTACGTGCCTACCTTCA
CAGCATCGATCCTCCCAACTCCTAAGCTTAAGCTCGGCTTCGCCCAA------CACATCACCGGCC------AAAATGTG
GCAGTCCAAGCCAGTCCTGCTCCTGCTCCTGCTCGCCGTCACCACGGCGGCGACCAGCGGTAAGCCGCTGCTCACGAAGA
TCACCAAGGGTGCCGCGTCCACGGCGCTCTACACCGCGCCCCTCAGCGCCGGCCGCCCGCTGGTCCTCGACCTGTCCGCC
CCGGCCATCACGACGCCGTGCAGCGGGCAGACGACGACCGTCACGCTCTCCGCCAACTCCACCGACGGCAGCAACCCGCT
GTCCCCGGTCTCCTTCGCTGCCACCGCCACCTGCGCGGCGGCCCCCTCCGGCGCCGTCGGCGTCGCGGGGCTCGCGCGCT
CTAGCGCATCGTTCCCGGCACAGGTCGCCAGTACACAGAAGGTGGCCAACTCGTTCGCGCTCTGCCTCCCGAGCGACGGC
AGGACCGGGTTCAGCGGCAACGGCGTGGGCGCGGCCATCTTCGGTGGCGGCCCGTTCTTCCTCGCGCCCCCGGCGGACCG
GCCGTCCATTACGACGCTCCTCTCCGACGGCGTCCCGCTCCGCCAGCCCTTCGCCGGGAACCCCGGCTACTTCGTGACCG
CCACCAACGGCATCGCCATCGACGGGACGCGCGTGACCGTGTCCGGCTCCGGTGCGCTTGTGGTCGGCCTCTCCACCACG
ATCCCCTACGCGCAGCTCCGGAGCGACGTGTACCGCCCCTTCATCACGGCCTTCGACCGCGCCATGGGATCCAGCGCCAA
GGTGGCGGCGGTGAAGCCATTCGAGCTGTGCTACGACTCGTCCAAGCTGGCGCCGACGCGGTTCGGGTACCTGGTGCCGA
ACGTGGACGTGATGCTGGAGGGCGGGACGAACTGGACGGTGGTGGGCGGCAACTCCATGGCGCAGGTGAACAGCGGCACG
GCGTGCTTCGCGTTCGTCCGGTCGGGAGGCAGCACGGGGGGCGCGACGCCGGCGCTGGTGATCGGAGGGTTCCAGATGGA
GAACAAGCTGGTGGTGCTGGACAACGGCAAGAAGACGCTCAGCTTCACCCAGAACCTCCCGGGCATGGGCTTCTCCTGCA
GCAACTTCAATTTCACCAGGGCCGGCTAGTGATCCACATCGTTT------------------------------------
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>chr3A_1001
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----------------------------------------------GTATATATAGGACGCACGTACGTGCCATCCTTCA
CAGCATCGATT--------------------------------CCAA------CACAACACAGCACGAGCCGAAAATGTG
GCAGTCCAAGCCAGTCCTGGTCCTCCTCCTGCTCGCCGTCTCCACGGCGGCGACCGTCGGCAAGCCGCTGCTCACGAAGG
TCACCAAGGGCGTAACGTCCACCGCGCTCTACACGGCGCCGCTCAGCGCCGGCCGCCCGCTGGTCCTCGACCTCTCCGCT
CCGGCCATCACGACGCCGTGCAGCGGCCAGACGACGACCGTGACACTCTCCGCCAACTCTACCGACGGCAGCAACCCGAT
ATCCCCGGTCTCCTTCGCTGCCACCGCGACATGCGCGGCGGCCCCGTCCGGCGCCGTCGGCGTGGCGGGGCTCGCACGCT
CCAGCGCATCGTTCCCGGCCCAGGTAGCGAGCACGCAGAAGGTGGCCAACTCGTTCGCGCTCTGCCTCCCGAGCAG----
--------------------CGGCGTGGGCGCGGCCATCTTCGGCGGCGGTCCATTCTTCCTAGCTCCCCCGGCGGACCG
GCCGGCCATCACGACGCTCCTCTCCGACGGGGTCCCGCTCCGCCAGCCCTTTTCCGGGAACCCCGGCTACTTCGTCTCAG
CCACCAACGGCATCGCCATCGACGGGACGCGCGTGGCCGTCTCCGGCTCCGGCGCGCTCATCGTCGGCCTCTCCACCACG
ATCCCCTACGCGCAACTCCGCAGCGACGTGTACCGCCCCTTCATCACGGCCTTCGACCGCGCCATGGGCTCGAGCGCGAA
GGTGGCGGCCGTGGCGCCGTTCGAGCTGTGCTACGACTCGTCCAAGCTGTCGCCGACGCTGTCGGGCTACTCCGTCCCGC
AGGTGGACGTGATGCTGGAGGGCGGGACGAACTTCACGGTGGTGGGCGGCAACTCCATGGCGCAGGTGAACAGCGGCACG
GCGTGCTTCGCGTTCGTGCAGGCCGGAGGCGGCACTGGGGGCGCGACGCCGGCGGTGGTGATCGGGGGGTTCCAGATGGA
GAACAAGCTGGTGGTGCTCGACAACGACAAGCAGACGCTCAGCTTCACCCCGTACCTCCCAGCCAGGGGGTTCTCCTGCA
GCAACTTCAACTTCACCAGGGCGGGCTAGTGATCGACA------------------------------------------
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>chr3D_1088
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---------------------------------------------------------------------CCGAAAATGTG
GCAGTCCAAGCCAGTCCTGGTGCTCCTCCTGCTCGCCGTCTCCACGGCGGCGACCCTCGGAAAGCCGCTGCTCACCAAGA
TCACCAAGGGCGGAGCGTCCACCGCGCTCTACACGGCGCCCCTCAGCGCCGGCCGCCCGCTCGTCCTCGACCTCTCTGCC
CCGGCCATCACGACGCCGTGCAGCGGGCAGACGACAAAAGTGACGCTCTCCGCCAACTCCACCGACGGCAGCAACCCGCT
GTCCCCGGTCTCCTTCGCTGCCACCGCCACCTGCGCGGCGGCACCCTCAGGCACCGTCGGCGTCGCCGGGCTCGCGCATT
CCAGCGCCTCGTTCCCGGCCCAGGTGGCCAGCACGCAGAAGGTGGCCAACTCGTTCGCGCTCTGCCTCCCGAGCGC----
--------------------CGGCGTGGGCGCGGCCATCTTCGGCGGCGGCCCGTTCTTCCTCGCGCCCCCGGCGGACCG
GCCGGCCATCACGACGCTCCTCTCCGATGGCGTGCCGCTCCGCCAGCCCTTCTCCGGGAACCCCGGCTACTTCGTCTCGG
CCACCAACGGCGTCGCCATAGACGGGACGCGCGTGGCCGTCTCCGGCTCCGGCGCGCTCGTGGTCGGCCTCTCCACCACT
ATCCCCTACGCGCAGCTCCGCAGCGACGTGTACCGCCCCTTCATCACGGCCTTCGACCGCGCCATGGGCTCGAGCGCGAA
GGTCGCGGCCGTGGCGCCGTTCGAGCTGTGCTACGACTCGTCCAAGCTCTCGCCGACGCGGTCGGGCTACTCCGTCCCGC
AGGTGGACGTGATGCTGGAGGGCGGGACGAACTTCACGGTGGTGGGCGGCAACTCCATGGCGCAGGTGAACAGCGGCACG
GCGTGCTTCGCGTTCGTCCAGGCGGGGGGCGGCACGGCGGGCGGGACGCCGGCGGTGGTGATCGGAGGGTTCCAATTGGA
GAGCAAGCTGGTGGTGCTCGACAACGACAAGAAGACGCTCAGCTTCACCCCGTACCTCCCGGCAATGGGCTTCTCCTGCA
GCAACTTCAACTTCACCCGGGCGGGGTAGTGATCCACA------------------------------------------
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>chr3D_2337
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---------------------------------------------CTTCCCGGCGCCCTTGCCGTCCTTCTCGCGGAAGT
A--CCGGTCGAAGAC-GGAGTAGGGATCGAGTCGGATCTTTTCGTCGCAAGAGTTGTCCTCGTCGTCGATGTCCTCCTTC
TCCTC-CTG----CGGTGGCAGTCCCGCCATGGCACGGACCGCCCGATTCTGCTCCCGAGCGAGGGTGCGTGTGTTCCTC
CGCTGTCGTTTCTTCTCAATGCGGGCGCAGATGGCTTCCTCCTCTGCG---------GCTGCCCGCATCGCCGCGTCAGC
TGCCTCCGCTGTCGCCATTTCCGCCGCGATACGGGCCTCGGC------GGCCCTTATCCTCTCAGTCCCACAGCGGGCCG
CTCGTTCCCGGTAGGACTCATAGTCTGCCCGGCCGGTGATGGGGAAGGAGAGATTTTCCG---GCTACCAGGAACGCGAT
GATACAGCCCCAAAAGA-CCC-GAGCGCCCGTTGAATCGACG-TATAGCGTCGCGTCGGACAGATCCGTCCGTCAGCCGG
GCGTTGTCCTCCCGGGAGCGGCAGAGTGCAATGCGGACCACCATTGCCACCTCCAACCCGCACGGGATGACACCC-----
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>chr3D_2337
CTTCCC--------------------------------------------------------------------------
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----------------------------------------------------GAGCCCCTGTGGTCCTTCTCGCGGAAGT
A--CCGGTCGAGGAT-TCAATGCGGATCGAGCCGGATCTGCTCATCGTCGGAGTTGTCCTCGCCGTCGCTGTCCTCCTTC
TCCTC-CTTTTTTCGGTGGCACTCCGCCCATGGCACGAACTGCCCGATTCTGCTCTCGGGCGAGGGTGTGTGTGTTCCTC
CACTGCCATTTCTTCACAATGCACGCGCGGATG-------------CGGCCGCCCGCGC---------CGCCGCATCAGC
CGCC---------GCCATTTCCGCCGCGATACGGGCCTCGGC------GGCCTTTATCCTCTCCTTCCAACGACGGGCCG
CCCGTTCCCGGTGGGACTCATACTCTACCCGACCGATGATGGGAAAGGAAAGGTGTTCCA---GCT---GGGACCGCGAG
GATCCAGCACCAGAGGA-CCC-GAGCGCCTGGTGAGCCAATGCTATTGTGTCACGGCGGACAGATCCGTCCGACAGCTGG
GCACTGTCCTCCCAGGAGCGGCGGAGTACAAAGCGGATTGCCATTGCCTCCTCCAACCTACACGGGATGACACCC-----
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>chr4D_2337
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---------------------------------------------CTTCCTGGTGCCCTTGCCGTCCTTCCTGTGAAAGT
A--CCGGTCGAAGAT-GCAGT-GGGATCGAGCCAGATCTGCTCGTCGCCGGAGCTGTCCTCGCCGTCGCTATCTTCCTTC
TCCTC-CTT----CAATGGCAGTCCGACCATGGCACAGACCGCCCAATTCTGCTCCCGGGCGAGGGCGCACATGTTCCTC
CCCTGTCGTTTCTTCACAATGCGGGCGTGGATGACTTCCTCCTCTATGAACGACCGCGC---------TGCCGCATCAGC
CGCCTTCGCGGCCGCCATTTTCGCCGTGATACAGGCCTCGGC------GGCCCTTATCCTCTCCTTCCCACGGTGGGCTG
CCCGTTCCCGGTGGGACTCATAGTCTGCCGGACCGGTGATGGGGAAGGAGATATTTTCCG---GCTACCGGGACCGCGAT
GATCCAGCCCCAAAGGA-CCCCGAGCGCCCGTTGAGCCGACGCAATGGAGTCGCGTCGGAAAGATCCGTTCGTCGGCCGG
GTGCAGTCCTCCCGGGAGCGGCGGAGTGCAATGCGGACCACCATTGCCTCCTCCAACCCGCACGAGATTACACCC-----
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>chr4D_2337
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---------------------------------------------CTTCCCGGCGCTCTTGCCGTCCTTCTCGTGGAAGT
A--CCGCTCGAAGAC-GCAGTACGGGTCGAGCCGGATCTGCTCGTCGCCGGAGCTGTCCTCGCCGTCGCTGTCCTCCTTC
TCCTC-TTT----CGGTGGCAGTCCGACCATGGCACGGACTGCCCGATTCTTCTCTCGGGCGAGGGTGCGCGTGTTCCTC
CGCTGTCATTTCTTCACAGTGTGAGCGCAGATGGCTTCCTCCTCTGCAGCCGCCCGCGC---------CGCCGCATCAGC
TGCCTCTGCCGCCGGCATTTCCGCCGCG--ATGGGCCTCGAC------GGACCTTATCCTCTCCTTCCCACGGCGGGCCG
CCCGTTCCTGGTGGGAATCATAGTCTGCCCAACCGGTGGTGGGGAAGGAGAGGTGTTCCG---GCTGCCGGGGCCGTGAG
GATCCAGCACCAGAGGA-CCC-GAGCGCCCGGTGA-------CTATGGCGTCGCGGCGGGCGGATCCGTCCGTCAGCCGG
GCGCTGTCCTCCCGGGAGCGGCGGGGTGCAATGCGGACTGACATTGCCTCCTCAAACCCACACAGGATACACCC------
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>chr5A_2337
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---------------------------------------------CTTTCCGGCGCCCTTGCCATCCTTCTCACGGAAGT
A--CCGGTTAAAGAC-ACGGTACGAATCGAGCCGGATCTGCTCATTGCTAGAGTTGTCCTCGATGTCGTTGTCTTGCTTC
TTCTC-CTT----CAGTGGCAATCTGGCCATAGCACGGACCGCCTGATTCCGCTCTCGGGTGAGGACGCGCGTGTTCCTC
CGCTGCCGTTCCTTCACAATGCGGGCGCGGATGGATTCCGCCTCTGTG---------GC---------CGCCGCATCAGC
CGCCTCCGCCGCTGCCATTTCCGCCTCGATACGGGCCTCGGT------GGCCCTTATCCTCTCCTTCCCACGGCGGGCCG
CCCGTTCCCGGTGGGACTCATACTCTGCTCGACAGGTGACAGGGAATGAGAGGTGTTCCA------GCCGGGACCGCGAG
GATCCAGCACCAAAGGA-CCC-GAGCGCCCGGTGAGCCGACGCTATGGCGGCGTGGCGGACGGATCCGTCTGTCGGCCGG
GCGTTGTCCTCCCGGGAGCGGCGGAGTGCAATGCGGACTGCCATTGCCTCCTCCAACCCGCACAGGATGACACCCCAGTC
GAT-----------------------------------------------------------------------------
-----------------GGATCCGGACTGGTCGGAGTCTGATCCGCTGCCTGCCATGGCGAAGAAGGCCGGAAACCGCCG
AAGGTGAGCTCGGGTGGTGAAGGGGAGTGCAGTGAAGTGGCTAGGGTTTGCTTTGATGAGTGGATGGAGACGAATATAAG
TGGAGTCGGGTGGGCCAGCATGGTCCGGGTCCGACGTGGCGGGCGTGTCCGGACGCCCCCA-TATCTGCCCCATACTTGG
GCTGGATATGGGAGATGCCAGTCAACCCCGACGTTTGAGGCC
>chr5A_2337
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---------------------------------------------CTTCCCGGCACCCTTGTTGTCCTTCTCGCAGAAGT
A--CCGGTCAAAGAC-GCACTAGGGATCGAGCCAGATCTGCTCATCGTCGGAGTTGTCCTCGCCAGAGC---------TG
TCCTT-CTT----CAGTGGCAGTCCGGTCATGGCACGGACCGCTCAATTCTGCTCTCGGGTGAGGGCGCACGTGTTTCTC
CGTTGTCGTTTCTTCACAATGCAGGCGCGGATGGCTTCCTCCTCTGCG---------GCCGCCCGCGCTGCCGCATCAGC
CGCC---------------TCCGCTGCGATATGGGCCTCGGC------GACCCTTATCCTCTCCTTCCCACGACGGGCT-
CCTGTTCCCAGTGGGACTCATAGTTTGCCCGACCGGTGATGGGAAATGAGAGAATTTCTG---GCTACCGGGACCGCGAT
GATCCAACCTAAGACGACCC--GAGCGCCCGTTGAGCCAATGCTATGGAGTCATGCCGGACAGATCCGTTTGTCGGTCGG
ACGTTGTCCTCCCGGGAGCGGCGGAGTGCAATGCGAATCGCCATTGCCTCCTCCAACCCACACGAGATGAGACCC-----
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>chr5D_2337
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---------------------------------------------CTTCCCAGCGTCCTTGTCGTCCTTCTCGCAGAAGT
A--CTGGTCGAAGAC-GCAGTACGGATCGAGTCGGATCTGCTTG-CACCGGAGCTGTCCTCGCCGCCGATGTCCTCCTTC
GGCA--------------GCAGTCCGGCCATGGCACGGACTGCCCGATTCTGCTCTCGGGCGAGGGTGCGTGTGTTCTTT
CGCTGCCGTTTCTTCACAATGCGAGCACGGATGGCTTCCTCCTCTGCG---------GTCGCCCGTG-AGCCGCCTCCGC
CGCC---------GCCATTTCCGCCGCAATACGGGCCTCGGC------GGCCCTTATCCTCTCCTTCCCACGGCGGGCCG
CCCGTTCCCGGTGGGACTCATAGTCTGTCCGACCGGTAATGGGGAAGAAGGGTGTTCC------CTGTCGGGACCGCGAG
GATCCAGCACCAGAGGA-CC--GAGCGCCCGGTGAGCCAACACTAGGGCGTCGTGGCGT-CAGATCCGTCC-TCGGTCGG
GCGCTGTCCTCCCGGGAGCGGCGGAGTGCAATGCGGACTGCCATTGCCTCCTCCAACCCACACGGGATGACACCC-----
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>chr5B_2337
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---------------------------------------------CTTCCCGGATCCCTTGCCGTCCTTCTCGTGGAAGT
A--CCGGTCAAAGAC-ACAGTAGGGATCGAGCCGAATCTGCTCGTCGCTGGAGTTGTCTGACCCGTGGATGTCCTCCTTC
TCCTC-CTT----GGGTGGCAGTCCGGCCATGGCACGGACTGCCCGATTCTGCTCTCGGGCAAGGGCGTGGGTGTTCCTC
CACTGTTGCTTCTTTACAATGCGGGCACAGATGGATTCCTCCTCTGCG---------AATGCCCGCGTCGCCGCATCAGC
CGCC---------------TCCACCGCTGCCATGTCGACAGCGAGGCAGACCCTTATCCTCTCCTTCCCACGCCGGGCAC
ACGTGTCCCGGTGGGACTCATACTCCATCGGAGCGGTGATGGGGAAGGGGGGTTTGAAGGT-TCCA---GGGATCGCGAT
GAACCAGCCCCGGAGGA-TCT-GGACGCCCGATGCGCCGACGCTATGGAGTCGCGTCAGACAGATCCTACCGTCGGCCAG
GCGCTGTCCTCCCAGGAGCGGCGGAGTGCAATGCGGACGGTCATTGTCTCCTTCAACCCGTACGGGATGACACCC-----
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>chr2B_2339
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-----------------------------------------------TCCCGGCGCCCTTGCCGTCCTTCTCACTGAAGT
A--CCGGTCGAAGA----AGTACGGATCAAGCCGGATCTACTCGTCGCTGGAGCTGTCCTCGCCATCGCTGTCCTCCTTT
TCCTC-CTT----CGGTGGCAGTCCAGCCATGGCACAGACCACTCGATTCTGCTCTCGAGCGAGGGCGCACATGTTCCTC
TGCTGCCATTTCTTCACAATGCAGGCGCGGATGGCTTCCTCCTCTGCG---------CCCGCCCACGTCACCGCATCGGC
TACC---------------TCCGCCGTGATACGAGCCTCGGC------GGCCCTTATCCTCTCCTTCCCACATCGGGCCG
CCCTTTCCCGATGGGACTCATAGTCTGCCCGGCCGGTGATGGA--AGGAGAGGTGTTCCCACTGCT---GGGGCCGCGAG
GATCCAACACCAGAGGA-CGC-AAGCGCCCGATGAGCCGACGCTACGGTGTCGCGGCGGACGGATCCGTCCGTCGGCCGG
GCGCTGTCCTCCCGGGAGCGGCGGAGTGCAGTGCGGACTGTCATTGCTTCCTTCAACCCACACGGGATGACACCC-----
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>chr4A_2347
CCCTTTC-------------------------------------------------------------------------
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-----------------------------------------------------------------CCTTCTCATGAAAGT
G--CCGGTCGAAGAC-GCAGTACAGATCGAGCCGGATCTGCTCGTCGCCGAAGCTGTCC---------------GCCTTA
TCCTC-CTT----CGACGGCAGTCCGGTCATGGCACGGACTGCCCGATTCTGCTCTCGGGCAAGGGCGCTCGTGTTCCTC
CGCTGTCGTTTCTTCACAATGCGGGTGTGGATGGCTTCCTCCTCTGCG---------GCCGCAT---CAGCCGCCTCCGC
CT----------TGCCATTTCCGCCACGATACGGGCCTCAAC------GGCCCTTATCCTCTCCTTCCCACCGCGGGCCA
CCAGTTCCCGGTGGGACTCATAGTCTGCCAGACAGGTGACGGGGAAGGAGAGGGGTTCTG---ATTGCCAGGACCGCGAG
GATCCAGCCCCAGAGGA-CCC-GAGCACCCGTTGAGCCGACACTATGGAGTCAGGGTGGACAGATCCGTCCGTCGGGCGG
CTGATGTCCTCCCAGGAGCGACGGAGTGCAATGCAGACTGCCATTGCCTTGTCCAACCTGCACGGGGTGACACCC-----
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>chr2D_2348
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--------------------------------------------------------CCTTGTCGTCCTTGTCGCGGAAGT
ATACCAGTCGAAGAAAGCAGTAGGGATCGAGCCGGATTTGCTCGTAGCCAGAGCTATCCGACCCGTCGCTGACCTTCTTC
TCCTCCTTT----GGGTGGTAGTCCGGCCATTGCACGGACCGTCCGATTCTGCTCTCGGGCGAGGGCGCACGTGTTCCTC
CGCTGCCACTTCTTTACAATGCGGGTGCAGATTGCTGCCTCCTCTGCGGTCGCCCGTGC---------CGCCGCATCAGC
CGCCTTCGCCGCCGCCATGTCGGCAGCAAGGCGGGCGTCTGC------CTCCCGTATACTCTCCTTCCCACGGCGGGCAC
AACGGTCTCGGTGGGACTCATACTCGGTCGGGGCGGTGATGGGAAAGGGAGATTTGAAGGC-TCCCGA----GACTCCAT
GATCCAGCCCCGGAAGA-TCC-GAGCGCCCGATGCGCTGATGCTATGGAGTCGCTCCGGACATATCCTGCCGTCAACCGG
GCGCTGTCCTCCCGGGAGCGGCAGAGTGCAATGCGGACGACCATTGCCTCCTCCAACCCGCACGGGATGACACCCAAGT-
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>chr2D_2357
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--------------------------------------------------------------------TCTCGCGGAAGT
A--CCGGTCGAAGAC-GCGGTAGGGATCGAGTCAGATCTGCTCGTCGCCAAAGCTGTCCTCGCCATTGTTG---TCCTCC
TCCTC-CTT----CGGTGGCAGTCCGGCCATGGCACGGACCACCCGCTTCTACTCTCGGGCGAGGGCGCACATGTTCCTC
CACTGCCGTTTCTTCACAATGCGGGCGTGGATGGCTTCCTCCTCTGTGGCAGTCCACGC---------CACCGCATCAGC
CGCCTCCGCCGCCGCCATTTTCGCTGCGATATGGCCCTCGGC------GGCCCTTATCCTCTCCTTCCCACGGCGGATTG
CCCGTTCCCGGTGGGACTCATAGTCTGCCTGACCGGTGATGGAGAAAGAGAGATTTTTCG---GCTGCCGGGGCC-CGAT
GATCTAGCCCCAGAGGA-CCC-GAGCGCTCGTTGAGCTGACGCTATGCAGTGGCGCTGGACAGATCCGTCCGTCGGCCGG
GTGTTGTCCTCTCGGGAGCGGCGGAGTGCAATGCGGACCGCCATTACCTCCTCCAACCCGCATGGGGTGACACTCCAGTC
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>SNPs
S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S---S-----------S----------------
----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
-S----------S---SSS-SSSSSSSSSSSSSSSSSSSSSSSSSS--------S-------------------------
--------SSS----------------------S-----S--------SSSSS----S----------S---------S-
---------------------------------------------S-------S---------S-----------S----
-------S---------S-S--------S---------------------------------------------------
--------------------------------------------------S-----------------------------
-----S---------S--------S--------------------------S----------------------------
-------------------S-----------------S--------------------S--------S--S---------
-------------S---------------S-----------------------------S-----------S--------
---------------------------------S-----S-----------------S----------------------
-----------------------------------------------S--------------------------------
---S----------------SSS------S--------------------------------------------------
---------------------------------S--------S-------------------------------------
--------S-----------------------------------------------------------------------
-----------------------S---S------------S---------------------------------------
------------------------------------------------S-------------------------------
------------------S-----S----S---------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S---------------
---S-------------------------------------------S----S-----S--------S------------
--------------------------------S----------------------------------S------------
-----S-S--------S--S------------------------------------------------------------
--------S-----------------------------------------------------S-----------------
----------------S----------S-----------------S----------------------------------
-------------S----------SS----SS-S--S-SSSSSS---S--S---S--S----------------------
----------------------------------------------------------------------------S---
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS-----SS--------S----SS-----S------------S--S---------S------S--
S-----------S------S---S-----S----------------------SS-SSSS-S----S-S----------S-
S----------------------SS------------------S--------S--------S----S------------S
-S-----S--S-S-S----S----SS--S-----S----S--
>forward_720
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------------------------------------------------------------GGCTGCCGAACCATTAGACT
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>reverse_2316
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---------------------------------------------------------------------------TTACA
TGCGGCAACCTCAGT-----------------------------------------------------------------
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