>input_sequence_56601
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----------------------------------------ATGGCCCGCAGACTTGGAGACGCTGCTTCAAGGCCAGAGG
TGGACTACGTGGTCATCCCGGCCACCCCGAAGATGCAGGAGGAATCGGCGCTCCTCTCCAGCAACGCAGCTGTCGCCTGG
CTCGAGGGGGCTCGCGACGACGTGCCCGCTGCAACTGTTGCGGCAGCTTTCGCTGCCAAGTTCGGCATCAGGCAGGCGGA
CGTCACCGTCGTGCGCCACTACCCCGAGAAGTTCTTTGTCTGGTTCATGTACCAGCACCACTGCGCCAATGCAACGGACC
GCGGCGACTTCCACCATGACGGCCTCCACATCTTCGTGCGCGCCTGGCGCCTGGAAGCCCATGCTGAGAATGAAGACCAG
CTGCATCATGTGCGCCTCTGCATCGAAGGAATCCCGGTCCATGGCTGGAACAACTACGTCGCCATGTTCGTCATCGGGCG
CGGCTGCTCTCTGGACTACATCGAGAACAGGTCACTGCGAAGGGAGGACACGAGGTACCTCGCGCTGTGGGCGTGGACCG
CCAACCCCGACGCGATCCCAAAGCTCAAGTGGCTCACTTTGCCGGCACGCGGCCAGCGTCGGCGTAGGCGGCGTGGCCTG
CGGCACCGCATGCTCATTCATCTGGACCTGCATGAGGACCACTCCAACGCACGCGAAGACGGTGACAACCCTCCCGCCCC
AGACGTGAACGAGTTCATCTGGTACCCAGGCATCGTCGACGGTGCTCCGCCTCCTGGTCGCCGGCGCGCGGCTCCAGCTG
CTCGCGACGACCGCCGCAACGCGCGGCGCGACGATGCCGACGACCGCGACGGCGGCCGCGGTAGAGATGGATCAAGAGGT
CGGACGGGGTGGGGCGACCGCATCCGTCGGTCTCTCTCCCGCAACGCACGGGAGCGCCAGCGCGGGGCGAACAAGGACCG
CTCCCGTGATCGCTCTGGTGGTGGCCGCCGCCACGATGTCGCGCCTATGGGTATGCTTGCGGCAATCACCACCAGGGACG
AGGTCAGGGGTCGCAGCCCGGTGCGTCAGGCGTCTCCACGATCTGGCCACCGTCTCGCCCACGACAACCTCACGCCGCCC
AACTCCCCGACGTCGGTGCTGCCATCAACGCCTGGTTCTAAGCATGGCGGCTCGGCTGCGTCCTCGATGTCCGCGGCGGC
GCGGGGCGCCGTCGTGCTCTGCGCTCCGGCTCACCTCGTCTCCCTGCTGCCATCGCTTTCCCCGGCTCG-CCCCTGGCTT
TGA-----------------------------------------------------------------------------
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>chr3A_1_TraesCS3A01G457200
TGTAGGTAATTATTATTTATTTTTCTTTGTTTATGAACCATGGTGTTGAAGGTTCAAAGGGGCTTAATCACTATCCCGGC
ACACCTAAATATCTCTAAGACATAACAATTGTCCTCAGAACAAGAATATGCCTACCGCTCTGCTTCCCCCTGCTCAGGCG
ACCGCATCGGCGGCGGCGACCTCGCCGGCCGTGCGTGGCTCCTTCCTCGCCTGCTGGTCCATGCCACTGCCCCCGCCACC
GTCGCTGGCTAAGTGGCCAGCTGCTCCATCTCCTCTGGCCATTCTGCAGCGGCTGCCTGACGTCGCGCCATCCCTCGGCT
CAGATCTGGATCCGCCGCCCCGCCAGCCTGCCCCAGCCGTCGCATCAGGCTCGGGCGTCGAGGAGGAGGTGGCTGCTTCT
CCGTTGGTCGCGCAGCATGGGCTGCTGGCTCAGGCCGCGGTGTGTGAGTCCTCGCGCTCTCTGCTTGCCCAGGGCATTCA
AGGCGATGCGGGCTCCTCGCGCTCTTTGCTTGCCCAGGGCATTCAAGGCGAGGCGGGCGTCAACCGCGGTGGGCAGCCTG
CTGCTGCGGGGCATTCAAGCCCGGGTGCGGGGGGCGAGGAGGAGGCTGATGTGACCGGCGGCTGGTAGCTCGTCCGGACA
CGCAACGCCCCGCGCCGCCCGGCTTTTGCCTCGCCGGCATTCAAGGCGCATTCCATCCCAAGCTGGCTTAAAGGGAGGTG
TTGCCGCTGCATCGCCCCCGGACACCGAGCTGCAGACTGCCGAGACCCCATCCGCTGCACTCGTTGCCTGGAGAACCACC
ACCGCGCCCGCGACTGCCGGAACAAGTGGCGCCCGCTGAGCTACCTCGCCCACCTCATCGCTCCTCTGCCGCTACCCCGT
CCTGTTGTCGTGCCTCAGGAGGGCACTGCCCCATGCTTTGGTGCGGGTCGAGGCTGGGCGCTTCCTCCCCAGCAGCCTGC
AGCGGCCGCCGTGTTCCCCAACCTCGCCGCCGCTGCTCCAATGGCCCGCAGACTTGGAGACGCTGCTTCAAGGCCAGAGG
TGGACTACGTGGTCATCCCGGCCACCCCGAAGATGCAGGAGGAATCGGCGCTCCTCTCCAGCAACGCAGCTGTCGCCTGG
CTCGAGGGGGCTCGCGACGACGTGCCCGCTGCAACTGTTGCGGCAGCTTTCGCTGCCAAGTTCGGCATCAGGCAGGCGGA
CGTCACCGTCGTGCGCCACTACCCCGAGAAGTTCTTTGTCTGGTTCATGTACCAGCACCACTGCGCCAATGCAACGGACC
GCGGCGACTTCCACCATGACGGCCTCCACATCTTCGTGCGCGCCTGGCGCCTGGAAGCCCATGCTGAGAATGAAGACCAG
CTGCATCATGTGCGCCTCTGCATCGAAGGAATCCCGGTCCATGGCTGGAACAACTACGTCGCCATGTTCGTCATCGGGCG
CGGCTGCTCTCTGGACTACATCGAGAACAGGTCACTGCGAAGGGAGGACACGAGGTACCTCGCGCTGTGGGCGTGGACCG
CCAACCCCGACGCGATCCCAAAGCTCAAGTGGCTCACTTTGCCGGCACGCGGCCAGCGTCGGCGTAGGCGGCGTGGCCTG
CGGCACCGCATGCTCATTCATCTGGACCTGCATGAGGACCACTCCAACGCACGCGAAGACGGTGACAACCCTCCCGCCCC
AGACGTGAACGAGTTCATCTGGTACCCAGGCATCGTCGACGGTGCTCCGCCTCCTGGTCGCCGGCGCGCGGCTCCAGCTG
CTCGCGACGACCGCCGCAACGCGCGGCGCGACGATGCCGACGACCGCGACGGCGGCCGCGGTAGAGATGGATCAAGAGGT
CGGACGGGGTGGGGCGACCGCATCCGTCGGTCTCTCTCCCGCAACGCACGGGAGCGCCAGCGCGGGGCGAACAAGGACCG
CTCCCGTGATCGCTCTGGTGGTGGCCGCCGCCACGATGTCGCGCCTATGGGTATGCTTGCGGCAATCACCACCAGGGACG
AGGTCAGGGGTCGCAGCCCGGTGCGTCAGGCGTCTCCACGATCTGGCCACCGTCTCGCCCACGACAACCTCACGCCGCCC
AACTCCCCGACGTCGGTGCTGCCATCAACGCCTGGTTCTAAGCATGGCGGCTCGGCTGCGTCCTCGATGTCCGCGGCGGC
GCGGGGCGCCGTCGTGCTCTGCGCTCCGGCTCACCTCGTCTCCCTGCTGCCATCGCTTTCCCCGGCTCG-CCCCTGGCTT
TGAGGCATCCCCGACCTCGACGACAATGCCGCCACTGCCGCTGGTGTCATCCCACACCCCTGCCGCCCCTGTGGCCACGG
TGCTGGTGTCGGAAGACACCGCTCCTCTGTTTCTGCCGTGCCCTGAGCCTATCATCGCGGATCCCCCAAGGGCTTCCCTA
CCACTGATGGCTGCCGGGCGGCGCAATACGATGGCGGGGATGGACATTGCTCGTGATGGCACCGGTGGCCTATCTCTTCG
CCGCTCCAGTGCTCGGCTACGCAAGGAAGGAAGACGCAAGGCCATTCCGGCTGCCAAGGCAGCAGAACTGCTGGTTTGCT
GTAACCTGGGCATTGTCCAGGATGGAGAGGATGTCACTGAACGGGCTCTGCTGCAGCTCTCGACCATGTTCAAGGAGCAG
CTGCCCCTGGACGTGCTGGCGGCCTTGAGGGCCCTTTTCAAGGTCGATGATGTGCAGGCAACAGCGGTGGAGGACGCGCT
CATCAACCACGGCGGCGCGGATGGCCTGGACCATGAGATGGTCTCTGGCGATGTGGCGAGGCATGCACCAGAAGAATA-A
TTGATGCTCCAGCTCTACGCCTGTGCAATTTAAGTTTCAAATGTTAGTTCATCTTTGGTTAGCTTGTGTGCTCCCCGATG
TTTGTTACCTCGGATGGGCATGTCCATCGAGGGTCGCTACTCTGTTCGTGGTTGCAGTGCTGACTGCTAGTTATTCCTGC
CTTAGCTCTTGCCTATGTGTCTCCATGGTGCCAATATGTTAGAGCAACCTGTGAACATCCTAAGCTGGAACATCAGGGGA
GTAAATGATCCAGATCGTCGGGCTACGGTCAATGAAACTATTTCCGCATCATCGTGCCAAATCGTTTGCTTGCAAGAGTC
TAAGCTTGAAAATATCGATTGCTACACAGCGGCCTTCCTGGGAGGGCAAAGGCTTAAAAGGTTTGCCCAAAGACCTGCCT
CTGGAACTAGAGGAGGGATCCTGCTCCTTTGGGATGAGCTTGTC
>chr2A_127
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----------------------------------------------TATGCCTCCCGCTCAGCT-CCCCCTGCTCTGGCG
ACCGCATCGGCGGCG---ACCTCGCCGGCCGCGCGTGGCTCCTTCCTCGCCTGCTGGTCCATGCCGCTGCCCCCGCCACC
GACGCTGGTTAAGTGGCCAGCTGCTCCACCTCCTGTGGCCATTCTGCATCGGCTGCCTGACGTGGCGCCGTCCCTTGGCT
CAGGTCTGGATCCGCCGTCCCGCCAGCCTGCCCCAGCCGCCGTGTCAGGCTCGGGCGTT---GAGGAGGTGGCTGCTTCT
CCGCTGGTCGCGCAGCATCGGCTGCTGGCTCAGTCCGTGGCGTGTGAATCCTCGCGATCTCTGCTTGCCCAGGGCATTCA
AGGCGA---------------------------------------------GGCAGGCTTTAACCACGGTGTGCAGCCTA
CTGCTGCGGGGCATTCAAGCCCGGGTGCGGGGCGCGAGGAGGATGCCGATGTGACCGGCGGCTGGCAGCTCGTCCGGGCA
CGCAACGCCCCACGCCGCCCGGCTTTTGCCTCGTCGGCATTCAAGGCGCATCCCATCCCAAGCTGGCTTAAAGGGAGGTG
TTGCCGCTGCATCGCCCCCGGACACCGAGCTGCAGACTGCCGAGAACCCATCCGCTGCACTCGCTGCCTGGAGAACCACC
GCCGCACCCGCGACTGCCGGAACAAGTGGCGCCCGCTGAGCTACCTCGCCCACCTCATCGCTCCACCGCCCCTGCCCCGT
CCTGTTGTCGCGCCTCAGGAGGGCACTGCCCCACGCTTTGGAGCGGGCCGGGGCTGGGCGCTTCCTCCCCAGCAGCCTGC
AGCGGCCGCCGTGTTCCCCAACCTCGCCGCCGCTGCTCCAATGGCCCGCAGGCTTGGAGACGCTGCATCAAGGCCAGAGG
TGGACTACGTGGTCGTCCCGACCACCTCGGAGATGCAGGAGGAGTCG--GCTCCTCTCCAGCAACGCAGCTGTCGCCTGG
CTCGAGGGGGCTCGCGACGACGTGCCCGCTGCAACTGTTGCGGCAGCTTTCGCTGCCAAGTTCGGCATCAGGCAGGCGGA
CGTCACCGTCGTGCGCCACTACCCCGAGCAATTCTTTGTCCGGTTCATGTACCAGCACCACTGCGCCAATGCAACGGACC
GCGGCGACTTCCACCATGACGGCCTCCACATCTTCGTGCGCGCCTGGCGCCTGGAAGCCCATGCTGAGAATGAAGACCAG
CTGCATCACGTGCGCCTCTGCATCGAAGGAATTCCTGTCCATGGCTGGAACAACTACGTCGCCACGTTCGTCATTGGGCA
CGG-----------------------------------------------------------------------------
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>chr2A_1441
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CGGCTGCTCTCTGGACTACATCGAGAACAGGTCGCTACGAAGGGAGGACACGAGGTACCTCGCGCTGTGGGCGTGGACCG
CCAACCCCGACGCGATCCTGAAGGTCAAGTGGCTCACTTTGCCGGCACGCGGCCAGCGGCGGCGTGGGCGGCGTGGCCTG
CGGCACCGCGTGCTCAGTCATCTGGACCTGCACGAGGACCACTCCAACGCACGCGAAGATGACGACAATCCTCCCACCCC
AGACGTGAACGAGTTCACCTGGTACCCAGACATCGTCAACGGTGCTCCGCCTCCTGGCCGCCGGCGCATGGCTCCAGCTG
CTCGCGACGACCGCCGCAACACGCGGCGCGACGACGCTGACGACTGCGATAGCGGCCGTAGTAGAGATGGCTCAAGAGGT
CAGACAGGGTGGGGCGACTGCATCCGCCGGTCTCTCTCCCGCAACGCGCGGGAGCGCCAGCGCGGGGCGGACCAGGACCG
CTCTCGTGATCGCTCTGGTGGTGGCCGCCGCCACGATGTCGCGCCCACGGGTCTGCTTGCGGCAATCACCACCAGGGATG
AGGTCACGGGACGCAGCCCGGTGCGTCAGGCGTCTCCACGATCTGGCCGCCGTCTCTCCCGCGACAACCTCACGGCGCCC
AACTCCCCGACGTCGGTGCTGCCATCAACGCCTGGTTCTAAGCATGGTGGCTCGGCTGCGTCCTCGATGTCCGCGACGGC
GCGGGGCGCCGTCGTGATCTGCGCTCTGGCTCACCTCGTATCCCCGCTGCCATTGCTTTCCCCGGCTCACCCCCTGGCTT
CAAGGCATCCCCAACCTCGACGACGACGCCGCCACTACCGCTGGTGTCATCCCACACCCCTGCCGCCCCTGTGGCCACGG
TGCTGGTGCCGGAAGACACCACTCCTCTGTTTCTGCCGTGCCCTGAGCCTATCATCGCGGAGCCCCCAAGGGCTTCCCTA
CCGCTGATGGCTGCGGGGCGGCGCAAGACGATGGCGGGGATGGACATTGCTCGTGATGGCACCGGTGGTCTATCTCTTCG
TCGCTTCAGTGCTTGGCTACGCAAAGTAGGAAGTCGCAAGGCCATTCCGGCTGCCAAGGCGGCAGAACTGCTGGTTTGCC
ATAACCTGGGCATTGTCCAGGATGGCGAGGATGTCACTGAACGGGCCCTACTGCAGCTCTCGACCATGTTCAAGGAGTAG
CTGCCTTTGGACGTGCTGGCGGCCTTGAGGGCCCTTTTCAAGGTCAGTGATGTGCAGGCAACAGCGGCGGAGGACGCGCT
CATCAACCACGGCGGCGCGGATGGCCTGGACCATGAGGTGGTCTCTGGCGATGCGGCGAGGCAGACACCAGAAGAATA-A
TTGATGCTCCAGCTCTACGCCTGTGCAACTTAAGTCTCAAATGTTAGTTCATCTTTGGTTAGCTTGTGTGCTCCCCTGTG
TTTGTTACCTCGGATGGGCATGTCCATCGAGGGTTGCTACTCTGTTCGTGGTTGCAGTGCTGACTGCTAGTTATTCCTGC
CTTAGCTCTTGCCTATGTGTCTCCATGGTACCAATATGTTAGAGCAACATGTGAACATCCTAAGCTGGAATGTCAGGGGA
TTAAATGATCCAGATCATCGTGCTACGGTCAATTAAACTATTTCCGCATCATCGTGCCAAATCATTTGCTTGCAAGAGTC
TAAGCTTGAAAATATCGATTGCTACACAGCGGCCTTACTGGGAGGGCAAAGGCTAAAAAGGTTTGCCTAAAGACCTGCCT
CTGGAACTAGAGGAGGGATCCTGCTCCTTTGGGATGAGCTTGTC
>chr6A_1742
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-------------------------------------------------------------CGGCGCGCGGCTCCAGCTA
CTCGCGACGACCGCCGCAACGCGCGGCGCGACGACACCGACGACCGCGACGACGTCCACGGTAGAGATGGCTCAAGAGGT
CAGATGGGGTGGGGCGACCGCATCCGCCGGTCTCTCTCCCGCAACG--------------CGCGGGGTGGACCAGGACCG
CTCCCGTGATCGCTCTGGTGGTGGCCGCCGCCACGATGTCGCGCCCACGGGTATGCTTGCGGCAATCACCACCAGGGACG
AGGTCAGAGGACGCAGCCCGGTGCGTCAGGCGTCTCCACGATCTGGCCGCCGTCTCTCCCGCGACAACCTCACGCCGCCC
AACTCCCCGACGTCGGTGCTACCATCAACGCCTGGTTCTAAGCATGGCGGCTCGGCTGCGTCCTCGATGTTCGCGGCGGC
GCGGGGCGCCGTCATGATCTGCGCTCCAGCTCACCTCATCTCCCCGCTGCCATCGCTTTCCCCGGCTCG-CCCCTGGCTT
TGAGGCATCCCCGACCTCGACGACGCCGCCGCCACTGCCGCTGGCGCCATCCCACACCCCTGCCT-CCCTGTGGCCACGG
TGCTGGTGCCGGAAGACACCGCTCCTCTGTTTCTGCCGTGCCCTGAGCCTATCATCGCGGAA-CCCCAAGGGCTTCCTTA
CCGTTGATGGCTGCGGGGCGGCGCAAGACGATGGCGGGGATGGACATTGCTCGTGATGGCACCGGTGGTCTATCTCTTCG
TTGTTCCAGTGCTCGGCTACGCAAAGGAGGAAGTCGCAAGGCCATTCCGGCTGCCAAGGCGGCAGAACTACTGGTTTGCC
GTAACCTGGGCATTGTCCAGGATGGCGAGGATGTCACTGAATGGGCTCTGCTGCAGCTCTCGACCATGTTCAAGGAGCAG
CTGCCTCTGGACGTGCTGGCGGCCTTGAGGGCCCTTTTCAAGGTCGATGATGTGCAGGCAACAGCGGTGGAGGACGCGTT
CATCAACCACGGCGGCGCGGATGGCCTGGACCATGAGGTGGTCTCTGGCAATGCGGCGAGGCAGACACCAGAAGAATAGA
TTGATGCTCCAGCTCTATGCCCGTGCAACCTTAGTTTCAAATGTTAGTTCATCTTTGGTTAGCTTGTGTGCTCCTCTGTG
TTTGTTACCTAGGATGGGCATGTCCATCGAGGGTTGCTACTCGGTTCGTGGTTGCAGTGCCGACTGCTAGTTATTCCTGC
CTTAGCTCTTGCCTCTGTGTCTCCATGGTAACAATATGTTAGAGCAACCTGTGAACATGCTAAGCTGGAACGTCAGGGGA
TTAAATGATCCAGATCGTCGGGCTACGGTCAATGAAACTATTTCCGCATCATCGTGCCAAATCGTTTGCTTGCAAGAGTC
TAAGCTTGAAAATATCGGTTGCTACACAATGGCCTTCCTGGGAGGGCAAAGGCTAAAAAGGTTTGCCCAAAGACTTGCCT
CTGGAACTAGAGGAGGGATCCTGCTCCTTTGGGATGAGCTTGTC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S------S---S----------S----
---------------SSS-------------S---------------------------------S--------------
-S------S-------------------S-----S-------------S--------------S-----S-----S----
---S-------------S---------------------S--SS--------------SSSS------------------
---S--------------S--------------S---S--S------S--------S-----------------------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---S-S----S-----S-------S
--------------------------------S----------S--S------------------S-----------S--
-----------S---------------------S-----------------S----------------------------
---------------------------------------------S-----------------S----------------
S----S----------------------------------------------------------S-S---S--S------
----------S----------------------S-------S-----S--S-----------------------------
---------------------------------------------------S--------------S-------------
--------------S-----S-----S--S-------------S---SS-------------------------------
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----------------------------S-S---------S---------------------------------------
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--------S-----------------------S--S----------------------------S---------S----S
---------------------------------S--S-------------------------------------------
------------------SS---S----------------------------------S------S--------------
---------S------S---------------S--------------------------S-SS-----S------S----
-----------------S-----------S-------S-------------------S----------------------
----------------------------------S-----------------------------------S---------
-S------------------------S--------------------S---------------------S--S-------
---------------------------------------------S-S--------------------------------
----------S-------------------------------------S-------S---S-------------------
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----------------S---------------------------S-----------------------------------
------------------------S-S-----------------------------------------------------
--------S----------------------------------------------------S------------------
--S-----------S-----------S-----------------------------------------S-----------
S-----------------------S-S------S--------------------------S------------------S
-------------------------S------------------------------------------------------
-----S--------------------------------------------------------------------------
-------------------------------------S---------------S---------SS---------------
----------------------------S-----------------------------------------------SS--
----------------------------------S---------------------------------------------
-----------------------------S-----------------------------------------S--------
S-------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
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>forward_87
-------------------------------------------------------------------TCACTATCCCGGC
ACACCTA-------------------------------------------------------------------------
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>reverse_1012
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---------------------------------------------------ACTTGGAGACGCTGCTTCAA---------
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>forward_289
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-----------------------------CTCCTCTGGCCATTCTGCAG-------------------------------
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>reverse_1617
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----------------TTCATCTGGACCTGCATGAGG-------------------------------------------
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>forward_1396
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----------------TCTGCATCGAAGGAATCCCG--------------------------------------------
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>reverse_2507
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--------------------------AAGGAAGACGCAAGGCCATT----------------------------------
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