>input_sequence_56574
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------------------------------------------ACCTTTTTTGCAAGGACA----CAAACATTGGTCCATC
CA--------CGATATGATTAGTCCAA--AGTTGTACGTATAATGC-AGCATGCTTAGCTTGGC-----CACCAGAAAAA
TATTCTGCCGCTTAGGTAGCTCCCTGCTAGAATACACCCACACACACTCAGCGGAAGAAGATGAAAAGAAAAGGAGACGA
GGC----GACG-ACGACGACCGGCCTCCACCGCACCACTCCACTCCACAAAGCCCAACCGCTAAAGCACCCAAGGAGAGG
-----GAGGCCGACCATTATAACCCACACAAATTCCCCACCGAGATAGAAGCGAACCCCGAGCCGAGCACTGA-----AA
AAAAAAGGAGAGGAGGAG--AAGGAAGAAGAAGCTAGAGAGTCGCGCAGCTAGAGAGCAC-------AGAAAGGCGCGAG
CTTTT----CTTGCTTTTGGTGCCATGGCGAGGTGGACGGCGCAGCGGAGCGGGCTGCTGCTCGTGGCGGCGCT---CCT
CGCGGTGGCC---GTGGCGGCGGCGGACGACAGCGGCGAGAAGTGCACGGGCGGGTGCGGGAACCCGTGCGGCATCCCGT
GCACCTACTCCAGCCCGCCGCCGCCGGAGCCGGCGCTGCCCCCGCCCGTCTACTACCCGCCGCCGGCGCCCGTCTACTCG
CCGCCGCCGCCCGAGGCCGTCTACCCGCCGCCCACGCCCACGGCCGACTGCCCGCCGCCCCCCACCGAGGGGTACACGCC
CGCGCCCTACACCCCGACGCCGTCCACGCCCTCCGGCGGGTACACCCCGGCGACCCCCTCCGGCGGGTACAACCCGACCC
CGTCCGGCGGGGACGGGTACAACCCGACGCCGTCCGGGTGGTTCACGCCGCCCAACATGCCGTCCTACCTCACCCCGCCC
GGCCCGCTCTACCCGCAGGACCCCGGGTTCCGGCCCAACGCCGCACCGGGCCTCTCCGCGGCGTGGCGCGCGGCCGCGAT
CGCTGCCGTGGCCGTCGCCGGCGCCCTGGCCTTGTGATCGCCACCGACCGACGCACCGATCGCGCCATGCCAAGGCACAC
GTGCGCGCGCGTCGCCGGAAGGCATGGGGCTAGCAGCTGCACCAT------TCGACCGGTCGATCCATGGAGCCGGACGT
TGAGCCGC----CGTGGTGAGCATGGTAACCTTGAAGCGCGCGCATGCAT------------GGCGTACGTACGTTTTAA
TTGATGAATTCCGTTGATTCCGTGTTGATAATAAGTAAGGTTAGGGGAAGAAGCAGGTCGATCCATCTCCGTGTTAATAA
T-------------------------------------------------------------------------------
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-------------------------------
>chr3B_1_TraesCS3B01G006300
CTTGGGGTCTTAACAAAAACAAAAGTAACTGAAGAATAAGAAATTCAATACTGAACCTACGGTTACTAGTACTAACTGCC
TGTGAATCAGATCGCACTACTGCTTCAGCTTCAGAAGAAAC----ATGAATGAATCAATGCAGCTAGAAATGAATAGGAG
CACTACGAAATAGTACCCCATCAAAGCAAATTAGGTGCCCCATCAAGAAAGAAAGAAAGAAACCTTTCCGTTTGGCCGGC
GTCATCACCGAAGCGTCAAGGCCTCAACCAAATCTCTCGCCATCACCAAGGAATTACCCGGCAGAAGATGAAGATGGTAA
GCGGACGGGTCTACCGCGTCATCACTGAAGCGTCAAGGCCTCAACCGAT-----TCTCTCACCATCACCGAGGAGCAAAC
CGGCAGAAGATGAAGGTGATTAGTACCGAGGAATAAATAAATATTCAGCGTCAGGCCTCGACCAATTGCTGCACAATAAT
CCTCTGTAAAAGGGAGCAGAAGCAATGTACTTCTACTCG-----------------------------------------
---------------------TTAAGAAACTGCCATTTGGTAGGGGGT-------TACTCATCACCCGTAGGGAGCGTAC
GTTTTCAGAGCGGAGGCGTCGCCCACTGACGCGTCAAGGCCTCGACCAAATCTCTCGCTGTCATCACCGACGGAAAAACA
AGGGCGGAAGATGAAGACGAC---------------AACGTCCTCAACACCCACTAATTGCCGACATGACCTTTGATTAA
GTTAACTCTGCACCATGAACTAGCTAGAG-------------GCGCCACGTAGCAAGTACAGTAGTATCTCACAGTTCCC
AGTCTCGATTCCAAGAAGAATAACAAATTCTGCT--------------------------------------GATAGATG
CACCAAGAAATGAAAA-ACATTCCGGTCACTGT----CAGCGGTCGACTAGAAAATAAAAGGTGCAGAGAAAGATGTGTG
CTC-------TTTCTTTCCAGTGGTGGTGGTGGTGGTGCTAGGGCTGTATGGTAGG----ATCGACTCGACTGAGATAAT
CATGCAGAGCAT--AAGAAGTTGGAGCCGTTTGAATCACGTCACCTTTTTTGCAAGGACA----CAAACATTGGTCCATC
CA--------CGATATGATTAGTCCAA--AGTTGTACGTATAATGC-AGCATGCTTAGCTTGGC-----CACCAGAAAAA
TATTCTGCCGCTTAGGTAGCTCCCTGCTAGAATACACCCACACACACTCAGCGGAAGAAGATGAAAAGAAAAGGAGACGA
GGC----GACG-ACGACGACCGGCCTCCACCGCACCACTCCACTCCACAAAGCCCAACCGCTAAAGCACCCAAGGAGAGG
-----GAGGCCGACCATTATAACCCACACAAATTCCCCACCGAGATAGAAGCGAACCCCGAGCCGAGCACTGA-----AA
AAAAAAGGAGAGGAGGAG--AAGGAAGAAGAAGCTAGAGAGTCGCGCAGCTAGAGAGCAC-------AGAAAGGCGCGAG
CTTTT----CTTGCTTTTGGTGCCATGGCGAGGTGGACGGCGCAGCGGAGCGGGCTGCTGCTCGTGGCGGCGCT---CCT
CGCGGTGGCC---GTGGCGGCGGCGGACGACAGCGGCGAGAAGTGCACGGGCGGGTGCGGGAACCCGTGCGGCATCCCGT
GCACCTACTCCAGCCCGCCGCCGCCGGAGCCGGCGCTGCCCCCGCCCGTCTACTACCCGCCGCCGGCGCCCGTCTACTCG
CCGCCGCCGCCCGAGGCCGTCTACCCGCCGCCCACGCCCACGGCCGACTGCCCGCCGCCCCCCACCGAGGGGTACACGCC
CGCGCCCTACACCCCGACGCCGTCCACGCCCTCCGGCGGGTACACCCCGGCGACCCCCTCCGGCGGGTACAACCCGACCC
CGTCCGGCGGGGACGGGTACAACCCGACGCCGTCCGGGTGGTTCACGCCGCCCAACATGCCGTCCTACCTCACCCCGCCC
GGCCCGCTCTACCCGCAGGACCCCGGGTTCCGGCCCAACGCCGCACCGGGCCTCTCCGCGGCGTGGCGCGCGGCCGCGAT
CGCTGCCGTGGCCGTCGCCGGCGCCCTGGCCTTGTGATCGCCACCGACCGACGCACCGATCGCGCCATGCCAAGGCACAC
GTGCGCGCGCGTCGCCGGAAGGCATGGGGCTAGCAGCTGCACCAT------TCGACCGGTCGATCCATGGAGCCGGACGT
TGAGCCGC----CGTGGTGAGCATGGTAACCTTGAAGCGCGCGCATGCAT------------GGCGTACGTACGTTTTAA
TTGATGAATTCCGTTGATTCCGTGTTGATAATAAGTAAGGTTAGGGGAAGAAGCAGGTCGATCCATCTCCGTGTTAATAA
TTTT--TTTGAGT-TTTTCATTCGTGTTGTGCTCATGTTCATGTCGTACATCGG-GTCGGCAGATGAACCGTTCTTGTCA
TGTACGTACGT----TGGGTCTCGTTG-TTTTTCACTTTGGTCAGTCAATCATAGGAAGGAAGGAAAAGGG--------T
GAATGTTCATCGATCAGGCTATGTGATACTGATACATAATATATAT----GTCTCTGATTACTCACACTACTTGAATTCT
ACTCCATGTTCCATGTCTCATCTTCTTGGTATCTATGT---------TTCCATGATCACCAACTCATGCA----------
-------------CCATGGTGCTGACTGATGAATTGTTGCTTTTGCTATCCCGATCAATGTGTGCAACCTAAGTAACCTC
TGTGTTAGGTACATTAACTAACTAGCCGTC--------GT------TAACACTTTGAGCTAGCATCCGCACATGCGTTG-
--CACCGGCCG---GTACATG------CACACACACGCTATCCGATCTTTCTTCGGCTAAAGTGCGATAGCATATCCATC
CACGAACAAGCTATATATGGTGGCCGACGAGGTCGATCGGTCGATGGAGAGCAAACTAGGCCATCA---ATGGCGAAAAA
GCAATGTGCCGGGCGGTGCGAAAATGTGTGTGTGT------------GCGCGCGCGCCGTGCGTCGTGGCAAACGTGTCG
ACGTCCGAGACCAAGGGGTCGCCGTCGATGGATATGTGTGTGTATCGGTGGTTGCGGCGTCGCTGTCCGTCGACCGCCAT
GCCTTCAATTGCTCCAGGCGTGCAAACGTACGTGCGTAGGCTGGT---------------GGATGATCACGCACCATCAT
CATGTACGCACCCAAGGC----AAATCATTGATGCGTGCGCAGG-----TATGTACAGTGTACGAG-TATAACATTGGAA
CTTCGGAGTGACGGAAGCTTGCATA----ACTTCAATCCATCTGCCACGCTGGATTGGTGAGCTGCACAGAGTAGGGATT
TTGTTCT-------------------------------------------------------------------------
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----------------------------------TTTTTTTAGCGACACATAGGCATGCATGCACACGTGGCAGGGCCCA
ATAATAAAAGGTGAAACGGACAGGAGTGGTG
>chr3B_5
----GGGTCTTAACAAAAACAAAAGTAACTGAAGAACAAGAAAATCAATACTGAACCCACGGTTACTAGCAGCA----CC
TGTGAATCAGATCGCACCACCGGTTCAGTTTCTGAAGAAACACGAATGAATGAATTAATGCAGCTCGAAATGAATAGGAG
CATTGCCGAACACCA--CCATCAAAGCAAATTAGTTGCCCCATCAAGAAAGAAA--------CCTTTCCGTTCGG-----
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------------------------------CGTCAAGGCCTCAACCAATCCAATCCTCTCACCATCACCAACGAATAAAC
CAGAAGAAGATGAAGCCGATTACTGTGGGGGTTTACACTCAGTACTATGCTCTTCTGTCAGAAA----------------
-------------AAAACCAAAGCAATTGAAAGAAGAAAATGAAAACTCGACCTACAGGTACTGAACAGTACGTACTCAT
CAAAGTAAATTAGGAGCCTCATTAAGAAGCCAGCCATTGGGCTGAGAGTTG-------------CTCGCA-GGAGCGTGC
GTTTTCAGAACGGGCAT------CACTGAAGCGTCAATGCCTCGGCCAAATCTCTCGCTGTCACCACCGACGGAGAAACA
AGGGCGGAAGATGAAGATGACGAGGCAGGCGCCTCCAACGTTCTCAAGACCCACTAATTGCCGACATGACCTTTGATTAA
GTTAATTCTGCACCATGAA----CTAGAG-------------GCGCCACGTAGCAAGTACAGTAGTATCTCACAGTTCCC
AGTCTCGGTTCCAAGAAGAATAACAAGCTGTGTGC--------------------------------------ATAGATA
CACCAAGAAATGAAAAAACATTCCGGTCACTTT----CAGCGGTCGACTAGAAAATAAAAGGTGCGGAGAAAGATGTGCG
TGCGCTTTGATTTCTTTCTAGTGCTTCTCTG--------------TGTAGGGTAGG----ATCGACTCGACTGGGATAAT
CATGCAGATCAGAGGAGAAGATGGAGCCGTTTGAATCACGTCACCTTTTCTGCAAGGACACAACCAAACATTGGTCCATC
CATCCACGATCGACATGATTACAAAAGTTTAGTGGCATAATGCATCAAGCATGCTTAACTTAGTA--GCCACCAGCACAA
TATTCTGCCGCTTAG------------------------------------------AGCAGAGGA--AAAGGACGACGA
GACGACGGACG-ACGACGACCGGCCTCCACCGCACCACTCCACTCCACAAAGCCGAGCCGCTAAAGCGCCCAAGGAGAGG
AGAGGGAGGCCGACCATTATAACCCACACAAATTCCCCACCGAGAGAGAAGCGAACCCCGAGCCGAGCACTGA-----AA
AAA---GGAGAGGAGGACACAAGGAAGAAGAAGCTAGAGAGTCGCGCAGCTAGAGAGCAC-------AGAAAGGCGCGAG
CTTTT----CTTGCTTTCGGCGACATGGCGAGGTGGACGGTGCAGCGGTGCGGGCTGCTACTGCTGGTGGCGCTCGTCCT
CGCGGTGACCGCGGCCGT---AGCGGACGACAGCGGCGAGAAGTGCACCGGCGGGTGCGGGAACCCGTGCGGCATCCCGT
GCACCTACTCCAGCCCGCCGCCGCCGGAGCCGGCGCTGCCCCCGCCCGTCTACTACCCGCCGCCGGCGCCCGTCTACTCG
CCGCCGCCGCCCGAGGCCGTCTACCCGCCGCCCACGCCCGCGGCCGACTGCCCGCCGCCCCCCACCGAGGGGTACACGCC
CGCGCCCTACACGCCGACGCCGTCCACGCCGTCCGGGGGCTACACCCCTGCGACGCCCTCCGGCGGGTACAACCCTACGC
CGTCCGGCGGGGACGGGTACAACCCGACGCCGTCCGGCTGGTTCACGCCGCCCAACATGCCGTCGTACCTGACACCGCCG
GGGCCGCTCTACCCGCAGGACCCCGGGTTCCGGCCCAACGCCGCGCCGGGCCTCTTCGCGTCGTGGCGCGCGGCGACCCT
CGCGGCGCTGGCGGTGGCCGCAGCCGTCGCCTTGTGATCGGCCCATCAACGCAGC---ATCGTTCCATGCCAAGGTACAC
GCGTCGCCTGCCG-------GGCATGGAGCCACCAGCTGCACCGAGAGCGATCGGCTGATCGATCCATGGAGCCGG----
TGAGCCGCCGTACGTGGTGACCATGGTGACCTTCAAGCGCGCGCTTGCAT------------GGCGTACGTTTTTCCTCA
T---TGAATTCCGTTGATTCCGTGTTGATAATAAGTAAGGTTAGGGGAAGAAGCAGGTCGATCCATCTCGGTGTTAATAA
TTTTTTTTTGAGT-TTTTCATTCGTGTTGTGCTCATGTTCATGTCGTACATCGG-GTCGGCAGATGAACCGTTCTTGTCA
TGTACGTAAGT----TGGGTCTC---G-TTTTTCGCTTTGGTCAGTCAATCATAGGAAGGAAGGAAAAGGG--------T
GAATGTTCATCGATCAGGCTATGTGATACTGATACATAATATATAT----GTCTCTGATTACTCACACTACTTGAATTCT
ACTCCATGTTCCATGTCTCATCTTCTTGGTAT----GT---------CTCCATGATCACCAACTCATGCA----------
-------------TCGTGGTGCTGCCTGATGAATTGTTTCTTTTGCTATCCCGATCATTGTGTGCAACCTAACCAACCTT
TGTGTTAGGTACATTAACGAACTAGCTGGTTAACCAGTGT------TAACACGTTG----AGCACCCGCACATGCGTTGT
TGCACCGGCCG---GTACATGCATGAACAAGCACACGCCATCCGATCTTTCTTCGGCTAAAGTGCGATAGCATATCCATC
CATGAACAAGCTATA----GTGGCCGACGAGGTCGATCGGTCGATGGAGAGCAAACTAGGCCATCA---ATGGCGAAAAA
GCAATGTGCCCGGCGGTGCGGAAATGTGTGTGTGTGTGTGTGGGCGCGCGCGCGTGCCGTGCGTCGTGGCAAACGTGTCG
ACGTCCGAGACCAAGGGGTCGCCGTCGATGGATATGTGTGTGTATCGGTGGTTGCGGCGTCGCTGTCCGTCGACCGCCAT
GTTTTCAATTGCTCCAGGCGTGCAAACGTACGTGCGTAGGCTGGT---------------GGATGATCACGCATCATCAT
CATGTACGCACCCAAGGC----AAATCATTGATGCGTGTCCAGG-----TGTATACAGTGTACTTG---TATCATTGGAA
CTTCGGACTGACGGAAGTTTGCATGCATGACTCCCATCGAGCTGCCACGCTGGATCAATGAATTGCACCCTTGCACAACA
TGGTGAT---TTTTCTTTTCTTTTCAGTGACACATAGGCATTCATGCATGCATGCACACGTGGCAGGGCCTAATTAGTAC
TCCCTCTGTCCCAAAATACTTGTCGGAGAAATGGATAAAATTGGATGTATCTATAACTAAAATACGTCTAGATTCATCCA
TTTCCCCGACAAGTATTTTCGGACGGAGGGAGTAATAAAAGGTGAAACTGACACGTGTCATGCTCTGGTTGCTCTGCCCC
TAGCTGCTCTCCCTTTTTGTAAAAAAAGAAACACAAAGTTTTTTGAAATGTGGTTAGTAGCCGTGGACGGATTTGTTCTG
CGCATCACTTTTGGCGCGCGTGTGTGTCTTTTTGGCCTGGGGAATACAGGGAGCAAACAATACTACATACTTATCATATT
TGGGGGTTTTTTCGCGGGTAGATATCATATTTGTTTTTGGACGCTTTTCAAACTGAAAGTTCATGCCCCGTTTCTTTCTG
CCAATAGAGTAACTATAAGAAAAGAAGAGAGGAAAAGAACGTCACGCCTCACCCTCCCACTGTAGGCCCACATTTCAAGT
GCTCAATAATGCCACTCTTATCATCTACCAACATATATCGCACACTACTATGTGCACCGGGGAGGCTATGATGTTTCCGG
CCCCGGATTGAATCCAACCCCGGTTCTCGATCCCGCGTCTTGCCATCCACCGTTCCTGCACGTCTTAACGGCGATGGCGA
CGACAAGGGTCTCCTCTCCTATACATGTGTCGCGTTAGGGCTTTTAGTGCTAGTTCTCTTTCACCTGGAAGGGGCACATG
CGGCGCTCCTTGAAGCCACAGATGGCGAAGGCCGGTGCAAGGGTGTTGGATGCGCATGTGCATCCTTTTCTTTCTGGCGC
CGAAGCGAAGAATTGGGTGAGCAGCGTGGCGACAATTATGCCGTGGTTAAAGATGATGACCTACTCAGGTCTGGCTGCGG
ATTCTTGTGTTGCAGGGGTCTTCTAGCAAGGTTTAGAGATGATCACACTGAGCTCCGGAGATGTTCTTATTTTACTGGTA
GTTTTAGCGTGCTCTTTTTTATTTTGGTTCTTTGTTTTTTTAGCGACACATAGGCATGCATGCACACGTGGCAGGGCCTA
ATAATAAAAGGTGAAACGGACAGGAGTGGTG
>chr3D_144
AAACTGAATAGGAGTATACCAAATGCTG----------------------------------------------------
--------------------------------------------------------------------------------
-----------------CCATGAAAGCAAATTAGGTGCCACATCAAGAAAGAAA----GAAACCTTTCCGTTTGGCCTGA
--------------------------------------------------------------------------------
--------------------ATCACTGAAGCGTCAGGGCCTCAACCAATCCAAATCTCTCACCATCACCAGGGAACAAAC
CGGCAGAAGATGAAGATGATTACTGCGGGGGTTTCAGCA-----------------------------CTGCACAGTAAT
AATCTCCTGCGAGAAAACAAAAGCAATTGGAACTGTACAAGGAAAACTGAACATACATGCATGTACTCCTTGGTGTTAAT
TTGGG------AGGCCCGTTATTAAGAAACTGCCATTTGGCATGGACGGGCTTACTACTCATCACTCGTG-GGTGGGAGC
GTTTTCAGAGCGTGCAG------CGCTGACGCGTCAAGGCCTCCACCAAATCTCTCACTATCACCAAACGAA-AAACACA
AGGGCA--------------------------------------------CCACTAATTGCCGACATGGCAGTAGCAGGA
TAAATTTGTATAGTCTACGCACAAGAATAAATTCAGAAAGTAGCACCACGTAGCAGCAGTTTCTATCTATCTACCCGGCA
GTTCGAAATTCAGATTATTCCAAGCACAGATTGATTTGTGCCTACTGATAGATATATAGGTAG------ATAGATAGATA
CACAAAGAAATGAAAA-ACATTCCGGTCCCTTT----CAGCGGTCGACTAGAAAATAAAAGATGCAGAGAAAGATGTGTC
TTC-------TTTCTTTCCAGTGGTGGTGGTAG------TAGGGCTGTAGGGTAGGATCAATCGACTCGACTGAGATAAT
CATGTTAT---GAGAAGAAGATGGAGCCGTTTGAATCACGTCACCTTTTCTGCAAGGACG----CAAACATTGGTCCATC
CA--------CGACATGATGACAAAAGTTAGTA----GTATAATGC-AGCATGCTTAGCTTGGCTTTGCCACCAGAACAA
TATTCTGCCGCTTAGGTAGCTCCCTGCTAGAATACAT------ACGCACACGCTGAGAGCAGAGGA--AAAAGGAGACGA
GAC----GACGGACGACGACCGGCCTCCACCGCACCACTCCACTCCACAAAGGCCAACCGCTAAAGCACCCAAGGACAGG
G----GAGGCCGACCATTATAACCCACACAAATTCCCCACCGAGAGA--AGAGAACCACGAGC-----ACTGA-----AA
AAA---GGA------GAG--GAGGAAGAAGAAGCTAGAGAGTCGCGCAGCTAGA----------------AAGGCTCGAG
CTTTTCTTGCTTGCTTTCGGCGCCATGGCGCGGCGGACGGTGCAGC---------------TGCTGGCGGCGCT---CCT
CGCGGTGACC---GTGGCGGCGGCGGACGACAGCGGCGAGAAGTGCACGGGCGGGTGCGGGAACCCGTGCGGCATCCCGT
GCACCTACTCCAGCCCGCCGCCGCCGGAGCCGGCGCTGCCCCCGCCCGTCTACTACCCGCCGCCGGCGCCCGTGTACTCG
CCGCCGCCCCCCGAGGCCGTCTACCCGCCGCCCACGCCCACGGCCGACTGCCCGCCGCCCCCCACCGAGGGGTACACGCC
CGCGCCCTACACCCCCACGCCGTCCACGCCGTCCGGCGGGTACACCCCGACGACGCCCTCCGGCGGGTACAATCCGACGC
CGTCCGGGGG---CGGGTACAACCCCACGCCGTCCGGGTGGTTCACGCCGCCCAACATGCCGTCCTACCTCACCCCGCCC
GGCCCGCTCTACCCGCAGGACCCCGGGTTCCGGCCCAACGCCGCGCCGGGCCTCTCCGCGTCATGGCGCGCGGCGGCCCT
CGCGGCTTTGACGGTGGCCGGAGCCCTGGCCTTGTGATCGTT------CGACGCACCGATCGCGCCATGCCAAGGTACAC
GCA----CGCGTGGCCTGAAGGCATGGAGCTAGCAGCTGCACCGC--------------TCGATCCATGGAGCCAAG---
-----CGC----CGTGGCGACCATGGTAACC--CAAGCGCGCGCGCGGGCGCATCCATGGCCGGCGCACGTACGTTTTAA
TTGA--AATTCCGTTGATTCCGTGTTGATAATAAGCAAGGTTAGGGAAGCAAGCCG--------ATGTCGGTGTTAATAA
TTTTTCTTTTTGAGTTTTCATTCGTGCTGT--TCATGTTCATGTCCTTCATCTGCGTCGGCAGATGAACCGTTCTTGTCA
TGTACGTAAGT----TGGGTCTC---GTTTTTTCACTTTG----GTCAATCATAGGAAGGAAGGAAGGAAGGAAAAAGAT
GGATGTTCATCGATCAGACTATGTGATACTGATACATATA---TATATATGTCTCTGATTACTCAC---ACTTGAATTCT
ACTCCATGTTTCATGTCTCATCTTCTTTGATCGACATGGTATGTTTCTCCCATGAACACCAACTCGATCATGCACCATGG
CCCATGCATGCCTCCATGGTGCTGAT---TGAATTGTTGCTTTTGCTATCCCGATCAATGTATGCAACCTAACTAACCTC
TGTGTTAG----------------------------GTGT------TAACACTTTG----AGCACCCGCACATGCGTTG-
--CACCGGCCGCCGGTGCATG------CACGCACACGCCATCCGATCTTTCTTCAGCCAAAGTGCACTAGGATATCCATC
CATGAACAAGC--CA----GTGGCCGACGAGATCGATCGATGGA--GAGACCAAACTAGGCCATCATCAATGGCG-AAAA
GCAATGTGCCGGGCGGTGCGAAAATGTGTGTGTG----------CGCGCGCGCGTGCCGTGCGTCGTGGCAAACGTGTCG
ACGTCCGAGACGAAGGGGTCGCGGTCGATGGGTATGTACATTGATCGGTGGTTGCGGCGTCGCTGTCCGTCGACCGCCAT
GTCTTCAATTCCTCCAGGCGTGCAAACGTACGTGCGTGGGCTGGTGGATCGATCGGGGTCGGACGACCACGCATCATCAT
CGTATACGCACCCAACGCAAATAAATCATTGATGCGTGTGCAGTGCAAATATGTACAGTG----TACTATATCATTGGAA
CTTCGGACTGACGGAAGCTTGCATG----ACTCTCATCGAGCTGCCACGCTGGATCGATGAACTGCACACTTGCGCACAT
AGCAGTGATGTTTTCTTTTCTTTTCGGTGACACATAGG----CATGCATGCATGCACACGTGGCAGGGCCTGATAG----
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-TAATAAAAGGTGAAACGGACAGGAGTGGTG
>chr3A_575
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------------GAGGCGTCACCCACTGACGCGTCAAGGCCTCGACCAAATCTCTCACTATCACCA---ACGAAAAAACA
ATATCAGAAGATGAAGATGATGAG----GCGCCTCCAACGTTCTCAAGACCCACTAATTGCCGACATGGCAATAGAATAA
TGAATTTGTAGCCTCT--GCCCAGGAATAAATTCAAAAAGTAGCACAGCATGCAGTT--------TCTATCTACCCGGTA
CTTGGATATTCAGATTATCCCAAGCACAGATTGATCTGTGCCTACTGATAGATAGATAGATATATAGGTATAGATAGATA
CACAAAGAAATGAAAA-ACATTCCGGTCACTTTCAGGCAGCGGTCGACTAGAAAATAAAGGGTGCGGAGAAAGATGTGCG
TGCCCTTTAATTTCTTTC------TGGTGCTTC------TCTGTGTGTAGGGTAGG----ATCGACTCGACTGAGATAAT
CATGCAGATCAGAGAAGAAGATGGAGCCGTTTGAATCACGTCACCTTTTCTGCGAGGGAG------------GGTCCATC
CG--------TGATATGATTAGTCCAA--AGTT----GTATAATGC-AGCATGCTTAGCTTGGCT---------------
------GCCGCTTGGGTAGCTACCTGCTAGAATACACCCACGCACGCACACACTGAGAGAGCAGAG-GAAAAGGAGACGA
GAC----GACGGACGACGACG-------ACCGCACCACTCCACTCCACAAAGCCCAACCGCTAAAGCGCC----------
-----GAGGCCGACCATTATAACCCACACAAATTTCCCACCCAGAGG--AGAGAACCCCGAGCCGAGCCGAGCACACCAA
AAA---GGA------GAG--GAGGAGGAAGAAGCTAGAGAGTCGCGCAGCTAGAGAGCACGGCCGCGAGAAAGGCTCGAG
CTTTT----CTTGCTTTCGGCGCCATGGCGAGGCGGACGGCGCAGCGGTGCGGGCTGCTGCTGGTGGCGGCGCT---CCT
CGCGGTGGTC---GCCGT---GGCGGACGACAGCGGCGAGAAGTGCACGGGCGAGTGCGGGAACCCGTGCGGCATCCCGT
GCACCTACTCCAGCCCGCCGCCGCCGGAGCCGGCGATGCCCCCGCCCGTCTACTACCCGCCGCCGGCGCCCGTCTACTCG
CCGCCGCCGCCCGAGGCCGTCTACCCGCCGCCCACGCCCACCGCCGACTGCCCGCCGCCCCCCACCGAGGGCTACACGCC
CGCGCCCTACACGCCCACGCCGTCCACACCGTCCGGCGGGTACACCCCGACGACGCCCTCCGGCGGGTACAATCCGACTC
CGTCGGGTGG---CGGGTACAACCCCACGCCGTCCGGGTGGTTCACGCCGCCCAACTTGCCGTCGTACCTGACCCCGCCG
GGGCCGCTCTACCCGCAGGACCCTGGGTTCCGGCCCAACGCCGCGCCGGGCGTCTCCGCGTCATGGCGCGCGGCGGCCCT
CGCGGCTTTGACGGTCGCCGGCGCCCTGGCCTTGTGATCGCCACCGACCGACGCACCGATCGCGCCATGGCAAGGTACAC
GTGGGCGCCT----CCGGAAGGCATGGGGCCAGCAGCTGCACCGT------TCGACCGATCGATCCATGGAGCCGG----
TGAGCAGC----AGTGGTGACCATGGTAACC--GAAGGGCGCGCATGCAT------------GGCGTACGTTTTA----A
T---TGAATTCCGTTGATTCCGTGTTGATAATAAGTAAGGTTAGGG---GAAGCAGGTCGATCCATCTCGGTGTTAATAA
TTTTTTT----GAGTTTTCATTCGTGCTGTGTTCATGTTCAGC-CGTACATCGGCGTCGGCAGATGAACCGTTCTTGTCA
TGTACGTACGTAAGTTGGGTCTC---G-TATTTCACTTTG----GTCAATCATAGGAAGGGAAAGGGTCACTACATGTTC
------------ATCAGACGATGTGATACTGATACATATT---TAT----GCTTCTGATTACTCAC---ACTTGAATTCT
ACTCCATGTTTCATGTCTCATCTTCATGGTAT----GT---------TTCGATGATCACCAACTCATGCA----------
-------------CCATGGTGC-------TGAGTTGTTGCTTTTGCTATCCCGATCAATGTGTGCAACCTAACTAACCTC
CGTGTTAG----------------------------GTACATTAACTAACACATCG----AGCATCCGCACATGCGTTG-
--CACCGGCCG---GTACATG------CACAC----GCCATCCGATCTTTAGCTAAAGT---TGAGGTAGTATATCCATC
CATGAACACGC--TA----GTGGCCGACGAGGTCGATCG----ATGGAGAGCAAATTAGGCCATCA---ATGGCG-AAAA
GCAATGTGCCGGGCGGTGCGGAAATGTGTGTGTG---------------------------CGTCGAGGCAAACGTGTCG
ATGTCCAAGACCAAGCGGTCGCACTCGGTCGATA--------TATCGGTGGTTGCGGCGTCGCTGTCCGTCGACCGCCAT
GTTTTCAATTCCTCCAGGCGTGCAAACGTACGTACGCAGT----------------------------------------
------CGCACCCAAGGC----AAATCATTGATGCGTGTGCAGTGCAAGTATGTAGCGTG----TG---CATCATTGGAA
CTTCGGAGTGACGGAAGCTTTGCATGAGT-CTCTCATCGACCTGCCAAGCTGGATCGATGAGCTGCACAGAGTAG-----
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-------------------------------
>SNPs
SSSS--------------------------------S------S-------------S-----------S-SS-SSSS--
-----------------S--S-S-----S---S----------------------S---------S--------------
--S-S-SS--S-SS-SS-------------------------------------SSSS-------------------S-S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS--------------------------S----------------------S----S-----
---------------S------S-S-S-S--SS----S-S-SSSSS-SSS--SSSSS--SSSS-SSSS-------S----
SS---SSSSSSS-S-SSSS--SSS-SS-SSSS---SS-S-----------------------------------------
----------------------------------------S-S---SS-----------------S----S-------S-
--------------------S------------------------------------------S----------------
-----------------S-----------------------S-----S--------------------------------
-----S--------------SSS---------------------------------------------------------
--------------------------SS-S--SS---------------------------------------------S
-------------------------------S------------------------------------------------
S------------------------------S-SSSSSS----------S------------------------------
--------S--S--------S----------------------------S------------------------------
----------------------------------SSS----------------------------------------S--
-----------------------------------------S---S-S--SSSSS---SS-SSS--S-------------
-S------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
---SSS--------------------------------------------------------------------------
-----------------S--S---------------------------S-------------S-----------------
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------------------------------S-----------------------S-----------------------S-
--------------------------------------------------------------------------------
--------------------------------------------S---------------S-------------S--SS-
---S--SS----S--------------------------------------------------------------S----
---S--------S------------------------------S--------------S-----------------SSSS
--------------------S-----------------------------------------------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
-----------------------SSS------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------SSSS--------------------------------------------
------------------------------------------------------------------------S-------
------------------S-------S-SS--------------------------SSSS--------------------
--------------------------------------S-----------------------------------------
--S------------SSSS-------------------------------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
-S-----------------------------------------------------------------------S------
--------------------------------------S------------------------SS------S--------
------------------------S-------S-S---S-S--------------S-S-----------------SS-S-
-S--SS--------------------------------------------------------------------------
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------------------------------------------------------------------------------S-
-------------------------------
>forward_460
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----------------------------------------ATATTCAGCGTCAGGCCTCG--------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>reverse_2341
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------GCATGGTAACCTTGAAGCGC----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>forward_1332
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TACACCCACACACACTCAGC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>reverse_3498
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GTGAGCTGCACAGAGTAGGG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
