>input_sequence_56556
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----------------------------------------ATGAGGGCTATTGGAATTGTTCTCACACAAAAGGCAAAAG
--CCGAGAGATGTTGTTCGACTTCGTACTCTAGAGCGAACCGAGCCAAGCCGGATATGAACCGCGCCGTCTCGAACTCTC
GAGCCCGCCTCGCCGCCTTCTCCTCGTCGTCCTCCTTCTCCTCGTCGTCACTGGCGTCGGAGGCGTGGGATGGGCGCTTC
CGGCTACACAAGCCGCGGGGGCAGCACCTGCTCACCAACCCACGCGTCCTCAACGCCATCGCGCGCCACGCCGCGCTCCG
TCCGGGCGACGCCGTACTCGAGGTCGGCCCCGGCACTGGCAACCTCACAGCCCGCCTCCTCGCCTCCCCGGTCGACCGCG
TCACCGCCGTCGAGATCGACCCGCGCATGGTCGACGCAGTCACGTCCCGTTTCGGGGCACTCGACCTGGCGCACAAGCTC
ACGGTCTGTCTCTGCCGGCGCCCACCACCTGCTCGATCAAATGCCTAAAGTCAAATGACGAATGGAATTTTCTTTCTCCA
TTGCCATGCCAGGTGATCCAGGGGGATGCCATGGAGACCGAATTCCCAGAGTTCGACGTTTGCGTGGCTAACATCCCCTA
CGGGATCTCCTCGCCGCTCATCGCGAAGCTGCTGTTCGGGACGTACCACTTCCGGACAGCAACGCTCCTGCTGCAGAAGG
AGTTCGCGCGGCGGCTCGTGGCCATACCAGGCGACTCGGAGTATAACCGCCTGGCGGCCAACGTTGGCATGGTAGCTGAC
GTGAAGCTGCTCATGGACGTGAGCAAGAGGGACTTCGTTCCCATGCCCAGGGTAGACTCCTCCCTCGTCGAGATCCGGCC
GAGGGCGGCTCCGCCTGAGGTCGACCTCGCCGAGTGGCTGGGCTTCACGCGGGAGTGCTTCGGGCAGAAGAACAAGACCC
TCGGTGCCATCTTCAAGCAGAAAAGGAAGATCCTGGATCTTCTCAAGCGGTCTCAGAGAAGCGAGAGATGCACAAGCGAT
GCCCCTGGC------------ATCATCCTCGGTGTTCTTGACGGCGACGGTAATGACGAAGCCTGCAGCGACGAAGACGG
CGACAGCAGCGATCGAGCAGCTGGTTTCAGCACGGAAGAGGTCGAGGCTTTCAAGGAAAGGATTGCCGGTGCTTTAGAGT
CCACCGAACTCGCTGGGAAGAGGCCGTCCAAGATGTCAAACGACGAGCTTCTTTATTTGCTCAGGCTATTCAACGAGCGA
GGGATATGGTTTCAGTAG--------------------------------------------------------------
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>chr2A_1_TraesCS2A01G225400
GGGCGTGACTTGGCGCGCTGCACACCAACACCGAAGCGAGCGATGCAAGCGAGCGGGTCGGGCGTGACTTGGCGTACGGA
GGTAGCAGCGAGCGGGATCGGCAGGCTAGCGAACGGCTCGGGCGTGGGAGGTAGAAGCTAGCGGGTGCAGGCGGGCGGGC
GCGATCGGCAGGCTAGCGTGCGGGTGAAGGAGAGAGGTGCAACACGCGCGGGGCTGGCGGGGAGAGCAAGTAGCGGCGGC
CGGTGCGGGGGTGTATGGGCGGCGGCGCGGAGGAGGCGGCAACAGAAGACTAGGGATAAAATCTAAAAACTAATATCATG
TATGATTGCACGATGTATTGCTTTTCGTGCATAGGCATGTATATATGATGTATAAATATGGGCCATGGATCTCAACTATA
CATGAACTAGAAAACGAGCCCAATACACAATATGCACATAACACATATACTCAACAGGCACAGGCGATGGCGGTGTGATG
CAATGGGCGGGCATGCGGCGGCGCGACTGGAGGAAGAAGATGCAGGTGGGGGAAAACTGAAGGGCAATTGACGATTGGCG
CCGGACCAATCTTACGTCGCGTGGAGGTGATTTGCATCTTCACGTATTGCATTTACACAATTTGGGTTAGGTGATATGAT
TTTTTTTTCATCTACATTATTATCTGTTGGGTGCAGGTTTTGGGGTTTCAAAGATGCAAAAGTTAATTATCTTTTAATCT
ACGTAGAAATCTTCTGTCTATACTAATATGAAAAGACCCAAAGGCCATCGAACTAAGTCAATCCAACAACCTATACTGCT
TCAATGGCGAGCGTTAAACGTGTTTAACATGCAATTAATGTCATACCGAATATTGCACTAATCATAAAATTAACACATAA
AAAATAACATACCTAATATCCGTGTGCAATTAATATATTTTCTAAATATTAACGTGCGTTGCACATGCACATTACTAGTT
GAAGATGGTTTTCTAACCACTTTTATGGGAAAAGTTCTGTATGAGGGCTATTGGAATTGTTCTCACACAAAAGGCAAAAG
--CCGAGAGATGTTGTTCGACTTCGTACTCTAGAGCGAACCGAGCCAAGCCGGATATGAACCGCGCCGTCTCGAACTCTC
GAGCCCGCCTCGCCGCCTTCTCCTCGTCGTCCTCCTTCTCCTCGTCGTCACTGGCGTCGGAGGCGTGGGATGGGCGCTTC
CGGCTACACAAGCCGCGGGGGCAGCACCTGCTCACCAACCCACGCGTCCTCAACGCCATCGCGCGCCACGCCGCGCTCCG
TCCGGGCGACGCCGTACTCGAGGTCGGCCCCGGCACTGGCAACCTCACAGCCCGCCTCCTCGCCTCCCCGGTCGACCGCG
TCACCGCCGTCGAGATCGACCCGCGCATGGTCGACGCAGTCACGTCCCGTTTCGGGGCACTCGACCTGGCGCACAAGCTC
ACGGTCTGTCTCTGCCGGCGCCCACCACCTGCTCGATCAAATGCCTAAAGTCAAATGACGAATGGAATTTTCTTTCTCCA
TTGCCATGCCAGGTGATCCAGGGGGATGCCATGGAGACCGAATTCCCAGAGTTCGACGTTTGCGTGGCTAACATCCCCTA
CGGGATCTCCTCGCCGCTCATCGCGAAGCTGCTGTTCGGGACGTACCACTTCCGGACAGCAACGCTCCTGCTGCAGAAGG
AGTTCGCGCGGCGGCTCGTGGCCATACCAGGCGACTCGGAGTATAACCGCCTGGCGGCCAACGTTGGCATGGTAGCTGAC
GTGAAGCTGCTCATGGACGTGAGCAAGAGGGACTTCGTTCCCATGCCCAGGGTAGACTCCTCCCTCGTCGAGATCCGGCC
GAGGGCGGCTCCGCCTGAGGTCGACCTCGCCGAGTGGCTGGGCTTCACGCGGGAGTGCTTCGGGCAGAAGAACAAGACCC
TCGGTGCCATCTTCAAGCAGAAAAGGAAGATCCTGGATCTTCTCAAGCGGTCTCAGAGAAGCGAGAGATGCACAAGCGAT
GCCCCTGGC------------ATCATCCTCGGTGTTCTTGACGGCGACGGTAATGACGAAGCCTGCAGCGACGAAGACGG
CGACAGCAGCGATCGAGCAGCTGGTTTCAGCACGGAAGAGGTCGAGGCTTTCAAGGAAAGGATTGCCGGTGCTTTAGAGT
CCACCGAACTCGCTGGGAAGAGGCCGTCCAAGATGTCAAACGACGAGCTTCTTTATTTGCTCAGGCTATTCAACGAGCGA
GGGATATGGTTTCAGTAGCACTTGTCAGCGCATCGGATCTTTGATTGTTCA-CGATGCAAATGACCGCCGCACACAACTG
ACCCATGTCCATGGA---AGCACAGAAGCGAATTTGCCAGTCCATGTA-TGTTTAGCAGCTGTCTAG-CGTACGCTGAGT
TGGTTCAGAGTTGCAAAGAGTTTCTTTGAAATTTGGCAACCTTAAGCCGAAGATCTCACACACGTGCTATTCATGAAATG
CTTATGATGAAACAGTATTACTAGGATTCACACATACACAATCGTATTGATAGGATTGCAGTTCACAAATGCGATGTTCC
TATTACTAGAACTCACAGAAAATTACTGGTAGACAGGACATAACATTAAGCAAATCCTGCAGAATTATG----TATGTTT
CGACTGTTCAACAGACTGACAATCGATCCTAAAAAAAACAGACTGACAATCATGATTTATGAACAACCACCACCATAGGA
TCAGGGTGCTACTCTAGACCAAACCGAACCAGAACAGGTGATGCAATCTTTAAACGCTTTCCTCCCTGTGGCTAGTCCAA
TGGAAAAAAAATCCTTAACCAACACGCAGAAAACATCTGCAGCCTGAAGAGTAATGAAGATCTTTCAAAATGAAAATGCA
GATAACATCTGTACAGAGATTCAACACCTGCAAGCAGCCAGTAGATACACTTTTACTTGATGGCAGGAAAGAGTGCTGCA
TTTTCTCCTGGATACAAAGAGTGTTGCTATG-CTACCTTCATCATGGCATAAAAATTTGAATCACCTTTTACTGGACCAT
ATTAAAAGAAATATTAAACGTGGGACAAAACAAGTCACCTGTTACGGGATCATACAATTCAAAAAAGAAAACAGAGAGAA
AGTTATACTTATTAAACAGCTGGATGTCAAAAACCATTTCCCAATTTGTGACATGCCTCCGTTTCCATGATTCCATCACA
TTGTAATGTACTCCTTCCGTCCCATAATGTAAGACGATTTTTGACATTAGATGAAGGAGTATACGGTTA
>chr2B_965
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----ATGCTTTTCTAACCACTTTTGCGGGAAAAGTA-TTTACGAAAGCTGTCGGAATTGCTCTCAAAAGGCAAAGAGACG
CTCCGAGAGATGTTGTTCGACTTCGTACTCTAGAGCGAACCGAGCCAAACCGGATATGAACCGCGCCGTCTCGCACTCTC
GAGCCCGCCTCTCCGCCTTCTCCGCCTCGTCCTCCT---CCTCGTCGTCACTGGCGTCGGAGGCGTGGGATGGGCGCTTC
CGGCTACACAAGCCGCGGGGGCAGCACCTGCTCACCAACCCACGCGTCCTGGACGCCATCGCGCGCCACGCCGCGCTCCG
CCCGGGCGACGCCGTACTCGAGGTCGGCCCCGGCACCGGCAACCTCACAGCCCGCCTCCTCGCCTCCCCGGTCGACCGCG
TCACCGCCGTCGAGATCGACCCGCGCATGGTTGACGCAGTCACGGCCCGTTTCGGGGCACTCGACCTGGCGCACAAGCTC
ACGGTCTGTATCTGCCGGCGCCCACCACCTGCTCGATCAAATGCCTAAAGTCAAATGACGAATGGAATTTGCTTTCTCCA
TTGCC-----AGGTGATCCAGGGGGACGCCATGGAGACCGAATTCCCAGAGTTCGACGTTTGTGTGGCTAACATCCCCTA
CGGGATCTCCTCGCCGCTCATCGCGAAGCTGCTGTTCGGGACGTACCACTTCCGGACAGCAACGCTCCTGCTGCAGAAGG
AGTTCGCGCGGCGGCTCGTGGCCATGCCAGGCGACTCGGAGTATAACCGCCTGGCAGCCAACGTCGGCATGGTAGCGGAC
GTGAAGCTACTCATGGACGTGAGCAAGAGGGACTTCGTTCCCATGCCCAGGGTAGACTCCTCCCTCGTCGAGATCCGGCC
GAGGGCGGCTCCGTCTGAGGTCGACGTCGCCGAGTGGCTGGGCTTCACGCGGGAGTGCTTCGGGCAGAAGAACAAGACCC
TCGGTGCCATCTTCAAGCAGAAAAGGAAGATCCTGGATCTTCTCAAGCGGTCTCAGAGAAGCGAGAGATGCACAAGCGAT
GCCCCTGGCGCTGGCAGTGGCATCATTCTCGGTGTTCTTGTTGACGACGGCAATGACGAAGCCTGCAGCGACGAAGACGG
CGACAGCGGCGATCGAGCAGCTGGTTTCAGCACGGAAGAGGTCGGGGCTTTCAAGGAAAGGATTGCCGGTGCTTTAGAGT
CCACCGACCTCGCCGGGAAGAGGCCGTCCAAGATGTCAAACGACGAGCTTCTTTATTTGCTCAGGCTATTCAACGAGCGA
GGGATATGGTTTCAGTAGCACTTGTCAGCGCATCGGATCTTTGATTGCTCACCAATGCAAATGACCGACGCACACAACTG
ACCCATGTCCATGG---TAGCACAGAAGCGAATTTGCCAGTCCATGTAATGTTTAGCAGCTGTCTAG-CGTACGCTTAGT
TGGTTCAGAGTTGCAGAGAGTTTCTTTGAAATTTGGCAACCTTAAGCCGAAGATCTCAAACATGTGCTATTCACGAAATG
CTTATGATGAAACAGTATTACTAGGATTCACACATACACAATCGTATTGATAGGATTGCAGTTCACAAATGCAATGTTCA
TATTAATATAACTCACA-AAAACTACTGGTAGACAGGACATAACATTAAGCAAATCCAGCAGAGTTATA----TATGTTT
CGACTGTTCAACAA-------------------------AGACTGATAATCATGATTTATGAACCACCACCACCATAGTT
TCAGGATGCTACTCTAGACCAAACCGAACCAGAACAGGTGATGCAATCTTTAAACGCTTTCCTCCCTGTGGCTAGTCCAA
TGGAAA--AAATCCTTATCCAACACGCAGAAAACATCTGCAGCCCGAAGAGTAATAAAGATCTTTCAAAATAAAAATGCA
GATAACATCTGTACAGAGATTCAACATCT----GCAGCCAGTAGATACACTTTTACTTGATAGCAGGAAATAGTGCTGCA
TTTTTATCTGGATGCAAAGAGTGTTGCTATGCCTACCATCATCATGGCATAAAAATTCGAATCACCTTTTGTTGGACTAT
ATTTCTAGAAATATTGAACGTGGGAGAAAAGAAGTAACCTGTTACCAGATCATACGCTTGAAAAAA--------------
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>chr2D_1071
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--------------------------------GAGCGAACCGAGCCAAACCGGATATGAACCGCGCCGTCTCGAACTCTC
GAGCCCGCCTCGCCGCCTTCTCCG---------------CCTCGTCGTCACTGGCGTCGGAGGCGTGGGATGGGCGCTTC
CGGCTACACAAGCCGCGGGGCCAGCACCTCCTCACCAACCCACGCGTCCTCGACGCCATCGCGCGCCACGCCGCGCTCCG
CCCGGGCGACGCCGTACTCGAGGTCGGCCCCGGCACCGGCAACCTCACAGCCCGCCTCCTCGCCTCCCCGGCCGACCGCG
TCACCGCCGTCGAGATCGACCCGCGCATGGTCGACGCAGTCACGGCCCGTTTCGGGGCACTCGACCTGGCGCACAAGCTC
ACGGTCTGTATCTGCCGGCGCCCACCACCTGCTCGATCAAATGCCTAATGTCAAATGACGAATGGAATCTTCTTTCTCCG
TTGCC-----AGGTGATCCAGGGGGACGCCATGGAGACCGAATTCCCAAAGTTCGACGTTTGTGTGGCTAACATCCCCTA
TGGGATCTCCTCGCCGCTCATCGCGAAGCTGCTGTTCGGGACGTACCACTTCCGGACAGCAACGCTCCTGCTGCAGAAGG
AGTTCGCGCGGCGGCTCGTGGCCATGCCAGGCGACTCGGAGTATAACCGCCTGGCAGCCAACGTCCGCATGGTAGCGGAC
GTGAAGCTGCTCATGGACGTGAGCAAGAGGGACTTCGTTCCCATGCCCAGGGTAGACTCCTCCCTCGTCGAGATCCAGCC
GAGGGGGGCTCCGCCTGAGGTCGACCTCGCCGAGTGGCTGGGCTTCACACGGGAGTGCTTCGGGCAGAAGAACAAGACCC
TCGGTGCCATCTTCAAGCAGAAAAGGAAGATCCTGGATCTTCTCAAGCGGTCTCAGAGAAGCGAGAGATGCACAAGCGAT
GCCCCTGGCACTGGCAGTGGCATCATCCTCGGTGTTCTTGATGACGACGGTAATGACGAAGCCTGCAGCGATGAAGACGG
CGACAGCGGCGATCGAGCAGCTGGTTTCAGCACGGAAGAGGTCGGGGCTTTCAAGGAAAGGATTGCCGGTGCTTTAGAGT
CCACCGACCTCGCCGGGAAGAGGCCGTCCAAGATGTCAAACGACGAGCTTCTTTATTTGCTCAGGCTATTCAACGAGCGA
GGGATATGGTTTCAGTAGCACTTGTCAGCGCATCGGATCTCTGATTGCTCACCGATGCAAATGACCGACGCACACAACTG
ACCCATGTCCATGGTAGTAGCACAGAAGCGAATTTGCCAGTCCATGTA-TGTTTAGCAGCTGTCTAGGCGTAGGCTGAGT
TGGTTCAGAGTTGCAGAGAGTTTCTTTGAAATTTGGCAACCTTAAGCCGAAGATCTCAAGCATGTGCTATTCATGAAATG
ATTATGATGAAACAGTGTTACTAGGATTCACACATACACAATCGTATTGATAGGATTGCAGTTCACAAATGCAATGTTCA
TATTAATATAACTCAAAGAAAACTACTGGTAGACAGGACATGACATGAAGCAAATCCTGCAGAATTATACTACTATGTTT
CGACTGTTCAACAA-------------------------AGACTGATAATCATGATTTACGAACAACAACCACCATAGGA
TCAGGATGCTACTCCAGACCAAACCCAACCAGAACAGGTGATGCAATCTTTAAACGCTTTCCTCCCTGTGGCTAGTCCAA
TGGAAA--AA-TCCTTAACCAACACCCAGAAAACATCTGCAGCCTGAAGAGTAATGAAGATCTTTCAAAATGAAAATGCA
GATAACATCTATACAGAGATTCAACATCT----GCAGCCAGTAGATACACTTTTACTTGATGGCAGGAAAGAGTGCTTCA
TTTTTATCCGGATGCAAAGAGTGTTGCTATGCCTACCATCATCATGGCATAAAAATTCGAATCACCTTTTGTTGGACCAT
ATTTCTAGAAATATTGAACGTGGGAGAAAAGAAGTAACCTGTGACGAGATCATACACTTGAAAAAA--------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS---S----------------SS---------SS-S--S--SS---S-S-------S-----S-SSSS-SSS-S-S-
------------------------------------------------S-------------------------------
-----------------------S-S----------SSS-----------------------------------------
---------------------------------------------------S----------------------------
S-----------------------------------S-------------------------------------------
--------------------------------------------S-----------------------------------
---------S----------------------------------------------------------------------
-----SSSSS----------------S-----------------------------------S-----------------
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-------------------------S-----------------------------S--------S-----------S---
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-----------------------------------------S-S------------------------------------
-------S------------------------------------S-----------------------------------
-------S-----S------------------------------------------------------------------
-----------------------------------------------S-------------------S------------
--------------S-----------------------------------------------------------------
---------------S------------------------------------------S---S-----------------
------------------------------------------------------------------------S------S
-----S--S-------------S---------------------------------------------S-----------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSS-------S---------------------------------
-----S--------------------------------------------------------------------------
------SS------------------------------------------------------------------------
--------------------------S--SSSS-----------------------------------------------
----SSS------S-----------------------S-------------------S------------SS--------
---SSS---------S---------S----S----S----------S---------S--S------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_206
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--------------------------AAGGAGAGAGGTGCAACACG----------------------------------
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>reverse_1547
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--------------------------TGCCATGGAGACCGAATTCC----------------------------------
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>forward_1157
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-----------------TTCTCCTCGTCGTCCTCCTT-------------------------------------------
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>reverse_2907
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--------------------------CCTGCAAGCAGCCAGTAGAT----------------------------------
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