>input_sequence_56519
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--------------------------------------------------------------------------ATGGCG
ATTGCGGTCGGCCACTGCCACGACCTCAAGCCGCCCGCCGTCCGCGGCCGGCACTACCGTCCGCACTCCGTCACCCAGCT
CGACCGCTCGCTGCTCGAACGCGACAATCAGGAACGGAATGCCCTGTCACCGCAGCGCCGGTGTCTCTCCTCCCCGTGCT
TCACCACCGTGGCCGAACCCGCCTCTGACGACGCCCACGACGACAAGAAGATGCCCCGCGTGGAGATCGTCGCGGGTCGT
CACGCCCGCGGCGTGCACGAGCTCATCGCGGAGGCCGCGGGAGCCATCGCGTCAGGGACGCGGCTTGTGCCAGCGCAGAG
CGGCCTCGGCGGGGCTTTGCTGCTCAAGGACGGCCGCTCCGGCGAGCACGTAGCGGTGATCAAGCCGCTCGACGACGCGA
CGTCTTCTCCATCGACCAACGGCGGAGGCGGCTACGAGAGCAAGGCCGTGCTGCGGGAGGTGGCCGCGTACCTCCTCGAC
CACGACGGGTTCGCCAGCGTCGCGCCCACTGCGCTGATCAAGATATCCCGCCCCGAGATGGAGACAACCGTGGCGTCCAT
CCAGCGCTTCGTGGCGCACCACTACGACGCCGGCGAGCTCGGCCCATCTAGGTTCTCCGTGACCTCCGTGCACCGTGTCG
GAATCCTCGACGTGCGCCTCCTCAATGTCGACCGCCACGCCGGCAACATCCTCGTCAAGAATCCGCCCACCAGCGGCTGC
GCCGTGGACGGCAGCACGTCGGCGGCGCCGCTGGAGCTCGTGCCGATCGACCACGGCCTCTGCCTCCCGGAGAAGCTCGA
CGACCCATACTTCGAATGGCTGCACTGGCCGCAGTCGTCGCGACCATTCTCCGGCGCCGAGCTCGACTACATCGCGTCGC
TGGACCCTTTCAAGGACGCCGAGATGCTCCGGGAAGAGCTCCCGTCCCTGACGGAGCCGGCCATCCGGATCCTCACCGTG
TGCACCGTCTTCCTCAAGCGCGCGGCCGCGGCTGGGCTCTGCCTGGCTGACATTGGCGACATGATGACCCGCGAGTTCTC
GTCGGCGGAGGAGGGACTGAGCGCGCTCGAGGCCCTCTGCAAGAAGGCCGTGGACTCCATCGACACCCACTCGCCGAAGC
GCGTGTCGTTCGGGGAGCTGGGTGGCGAGGAGTGGGTGGCGTTCATGGAGAAGTTTGAGCAGCTGCTGCCGCCGGCGTTC
GAGGACAAGAAGCGCGGGGCTGGCGTCGCGCTGAATTAA-----------------------------------------
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>chr3B_1_TraesCS3B01G215600
TGATGTCATACTTAGATGTGACATAGTTATGTCACATCTAGATGAGTCCTAGCCACCCGTTAGAATCAACCTTG-ATTAG
CCGGTTAAAATGGTAACAG---------------------------------AAGAAGGTTAGCGTAGTATACTTCAGAA
CTTGTAGAACTTTCCACAAGATCCGGCATACCACAGGCTTCCCGGCTCCCGCCGCCAATCGACTCGCGACGTCGACCTTC
CAAGTTCCAACCCTCACAACGGTTGTGCCGCCGGCGTGTCCGTGGCTTGGGTAGCTCGTACGGGCCAGGCAGGGTAACCC
AGAGCCAAATTTAGCCATGGCCGAAACAGAAACGCAACAGCACGATGGTCGATCTATATACTTCGCCATGGCTTCCCCGG
GGTTGCAAAAATAGAGCTCCTTCTCTTTCCTTTCCTTTCCCCAGACGCAGCGGAGGGAAGGGGAAGATTAGAAAGGAAGG
GGAAGGAACAAGGATTAACTAAAGCTGCGTAGATTCGTGTACAACTAACACTTTGAGGTAGCAATCAAAGATCAGGCCGG
GAGAGGGCGGCGGCGAGCGACGGTGTGGGTGGTGGTGGCCGGCCGGCCGGCGGGGGAAGCGCAGCACACGCCCCTTCTCC
CTCTGCACGCTGCCTTGATCGATCCATTCGGTACGGCTCTTCTACCCTGATCGTGGAGGAAAAGAGTATCAAATCAATTC
CGCACTGCCAATGCCTTCGCCTGCCCCCGCCGTCGCCGCCCAGCCGTCGTCACTGTCGTCCCTTCCCGGCTGCGACGGCT
GCTACTGACTCGACCTGGATGTAGTAGCTAGCTAGCTCTCGATTGACATGTTGTAACAAGCCAGAAACACAAACCGAGGT
ACGTCGTTTGTGTCTCCGGTCGCCATTGATTTAGTAATTTATTTACAGTGCACATGCACCTTATACTATGATCTGAGGAA
GTTGGTTTCATGCATGGATCGAATCTGTGAGTAGCCGGCCGTTTGCCACGGGCTACTGCCACCACCATCACCTGATGGCG
ATTGCGGTCGGCCACTGCCACGACCTCAAGCCGCCCGCCGTCCGCGGCCGGCACTACCGTCCGCACTCCGTCACCCAGCT
CGACCGCTCGCTGCTCGAACGCGACAATCAGGAACGGAATGCCCTGTCACCGCAGCGCCGGTGTCTCTCCTCCCCGTGCT
TCACCACCGTGGCCGAACCCGCCTCTGACGACGCCCACGACGACAAGAAGATGCCCCGCGTGGAGATCGTCGCGGGTCGT
CACGCCCGCGGCGTGCACGAGCTCATCGCGGAGGCCGCGGGAGCCATCGCGTCAGGGACGCGGCTTGTGCCAGCGCAGAG
CGGCCTCGGCGGGGCTTTGCTGCTCAAGGACGGCCGCTCCGGCGAGCACGTAGCGGTGATCAAGCCGCTCGACGACGCGA
CGTCTTCTCCATCGACCAACGGCGGAGGCGGCTACGAGAGCAAGGCCGTGCTGCGGGAGGTGGCCGCGTACCTCCTCGAC
CACGACGGGTTCGCCAGCGTCGCGCCCACTGCGCTGATCAAGATATCCCGCCCCGAGATGGAGACAACCGTGGCGTCCAT
CCAGCGCTTCGTGGCGCACCACTACGACGCCGGCGAGCTCGGCCCATCTAGGTTCTCCGTGACCTCCGTGCACCGTGTCG
GAATCCTCGACGTGCGCCTCCTCAATGTCGACCGCCACGCCGGCAACATCCTCGTCAAGAATCCGCCCACCAGCGGCTGC
GCCGTGGACGGCAGCACGTCGGCGGCGCCGCTGGAGCTCGTGCCGATCGACCACGGCCTCTGCCTCCCGGAGAAGCTCGA
CGACCCATACTTCGAATGGCTGCACTGGCCGCAGTCGTCGCGACCATTCTCCGGCGCCGAGCTCGACTACATCGCGTCGC
TGGACCCTTTCAAGGACGCCGAGATGCTCCGGGAAGAGCTCCCGTCCCTGACGGAGCCGGCCATCCGGATCCTCACCGTG
TGCACCGTCTTCCTCAAGCGCGCGGCCGCGGCTGGGCTCTGCCTGGCTGACATTGGCGACATGATGACCCGCGAGTTCTC
GTCGGCGGAGGAGGGACTGAGCGCGCTCGAGGCCCTCTGCAAGAAGGCCGTGGACTCCATCGACACCCACTCGCCGAAGC
GCGTGTCGTTCGGGGAGCTGGGTGGCGAGGAGTGGGTGGCGTTCATGGAGAAGTTTGAGCAGCTGCTGCCGCCGGCGTTC
GAGGACAAGAAGCGCGGGGCTGGCGTCGCGCTGAATTAACGCCGACGACTGTGATGAAACGTACGTACGATCTGCACGCA
GGGTGTAAATGTGTATGCATACGTGTGTGGTGGTGATTTAACCAAACAGAGAAGCCTTGCGTGTTACAAGTATATGTGTG
TGTGCGTACATTGATCGAGGCCGTACGTGTACGTGAGCTTGTGCCGTAACATGCTATGGGGAGCATGCAGCTCTGGAACC
ATCTTCCGAAGAGGCTGACACCAAACGTTGCAGCGATGCCAACACAATGCATGGGACAACTAACAGCTCGTGCCGGACGG
TAGCTGGGTGGCTCCAGTTGATTCACCTCACCTTTAAAATTATAAAGCAACTCAATTAGGATCATTCAAGACTATTACTA
CCTCTGTATCATGGTATAAGG-----TTGCAGTTCAAATTCAACTGCAAAAACGTTTTATATTAATGATATGGAAGAAGT
AAATCTTAAAAGGTAATACTACCTCGGAATAGAAAGTCATCCTTCATCTTTCAACTGTCTCTTTCAGCGGCAGCTTTTGC
CCAATCTCAAGACATGTTGATCTTGCTATAAAATTCCTAGAGGACCATCCTGACATGTGGCAATACCTTACTGGTGCTAA
GTCATATTGTAGGATCGAAAGTATGTCTAGAGGTGGGGTGATTAGACTACTTGACCAAATAAAAATCTAGCATTTTTCCA
ATTTTAGTTCTTGGCAGATTTTAGCAACTTAGCACAAGTCAAACAATCTTAACACAACTCAAGCAAGCATGCAAAGAGTA
TATGAGCAACGGAAAGTAAAGCATGCAACTTGCAAAAATGTAAAGGGAAGGGTTTGGAGAGTGCAAACGCAATAGGAGAC
ACGGATGTTTTTATCGTGGTTTCGATAGATGGTGCTATCGTACATCCACATTGATGGAGACTTCAACCCACGAAAGGTAA
CAGTTGCGCGAGTCCACGAAGGGCTCCACCCACGAAGGGTCCACGAAGAAGCAACCTTGTCTATCCCACCATGGCTGTCG
CCCA
>chr3D_60
-----------------------------------------------------------TTAGAATCAACCTTGGATTAG
CCGGTTAAAATGGTAACAG---------------------------------AAGAAGATTAGTGGAGTATACTTCAGAA
CTTGTAGAACTTTCCACAAGATCCGGCATACCACAGGCTTTCCGGCTCCCGCCGCCGCTCGACTCGCGACGTCGACCTTC
CAAGTTCCAACCCTCACAACGGTTGTGCCGCCGGCGCGTCCGTGGCTTGGGTAGCTCGTACGGGCCAGGCAGGG------
----CCAAATTTAGCCATGGCCGAAACAGAAAGGCAACAGCACGATGGTCGATCTATATACATCGCCATGGCTTCCCCGG
GGTTGCAAAAATAGAGCTCCTTCTCTTTCCTTTCCTTTCCCCAGACGCAGCGGAGGGAAGGGGAAGATTAGAAAGGAAGG
GGAAGGAACAAGGATTAACTAAAGCTGCGTAGATTCGTGTACAACTAACACTTTGAGGTAGCAATCAAAGATCGGGCCGG
GAGAGGGCGGCGGCGAGCGACGGTGTGGGTGGTGGTGGCCGGCCGGCCGGCGGGGGAAGCGCAGCACACGCCCCTTCTCC
CTCTGCACGGTGCCTTGATCGATCCATTCGGTACGGCTCTTCTACCCTGATCGTGGAGGAAAAGAGTATCAAATCAATTC
CGCACAGCCAATGCCTTCGCCTGCCCCCGCCGTCGCCGCCGAGCCGTCGTCACTGTCGTCCCTTCCCGGCTGCGACGGCT
GCTACTGACTCGACCTGGATGTAGTAGCTAGCTAGCTCTCGATTGACATGTTGTAACAAGCCAGAAACACAAACCGAGGT
ACGTCGTTTGTGTCTCCGGTCGCCATTGATTTAGTAATTTA----CAGTGCACATGCACCTTATACTATGATCTGAGGAA
GTTGGTTTCATGCATGGATCGAATCTGTGAGTAGCCGGCCGTTTGCCACGGGCTACTGCCACCACCATCACCTGATGGCG
ATTGCGGTCGGCCACTGCCACGACCTCAAGCCGCCCGCCGTCCGCGGCCGGCACTACCGTCCGTACTCCGTCACCCAGCT
CGACCGCTCGCTGCTCGAACGCGACAATCAGGAACGGAATGCCCTGTCACCGCAGCGCCGGTGTCTCTCCTCCCCGTGCT
TCACCACCGTGGCCGAACCCGCCTCTGACGACGCCCACGACGACAAGAAGATGCCCCGCGTGGAGATCGTCGCGGGTCGC
CACGCCCGCGGCGTGCACGAGCTCATCGCGGAGGCCGCGGGAGCCATCGCGTCAGGGACGCGGCTTGTGCCAGCGCAGAG
CGGCCTCGGCGGGGCTTTGCTGCTCAAGGACGGCCGCTCCGGCGAGCACGTAGCGGTGATCAAGCCGCTCGACGACGCGA
CGTCTTCTTCATCGACCAACGGCGGAGGCGGCTACGAGAGCAAGGCCGTGCTGCGGGAGGTGGCCGCGTACCTCCTCGAC
CACGACGGGTTCGCCAGCGTCGCGCCCACTGCGCTGATCAAGATATCCCGCCCCGAGATGGAGACAACCGTGGCGTCCAT
CCAGCGCTTCGTGGCGCACCACTACGACGCCGGCGAGCTCGGCCCATCTAGGTTCTCCGTGACCTCCGTGCACCGCGTCG
GAATCCTCGACGTGCGCCTCCTCAATATCGACCGCCACGCCGGCAACATCCTCGTCAAGAATCCGCCCACCAGCGGCTGC
GCCGTGGACGGCAGCACGTCGGCGGCGCCGCTGGAGCTCGTGCCGATCGACCACGGCCTCTGCCTCCCGGAGAAGCTCGA
CGACCCATACTTCGAATGGCTGCACTGGCCGCAGTCGTCGCGACCATTCTCCGGCGCCGAGCTCGACTACATCGCGTCGC
TGGACCCTTTCAAGGACGCCGAGATGCTCCGGGAAGAGCTGCCGTCCCTGACGGAGCCGGCCATCCGGATCCTCACCGTG
TGCACCGTCTTCCTCCAGCGCGCGGCCGCGGCTGGGCTCTGCCTGGCTGACATCGGCGACATGATGACCCGCGAGTTCTC
GTCGGCGGAGGAGGGGCTGAGCGCGCTCGAGGCCCTCTGCAAGAAGGCCGTGGACTCCATCGACACCCAGTCGCCGAAGC
GCGTGTCGTTCGGGGTGCTGGGTGGCGAGGAGTGGGTGGCGTTCATGGAGAAGTTTGAGCAGCTGCTGCCGCCGGCGTTC
GAGGACAAGAAGCGCGGGGCTGGCGTCGCGCTGAATTAACGCCGACGACTGTGATGAAACGTACGTACGATCTGCACGCA
GGGTGTAAATGTGTATGCATACGTGTGTGGTGGTGATTTAACCAAAGAGAGAAGCCTTGCGTGT------TATATGTGTG
TGTGCGTACATTGATCGAGGCCGTACGTGTACGTGAGCTTGTGCCGTAACATGCTATGGGGAGCATGCAGCTCTGGAACC
ATCTTCCGAAGAGGCTGACACCAAACGTTGCAGCGATGCCAACACAATGCATTGGACAACTAACAGCTCGTGCCGGACGG
TAGCTGGGTGGCTCCAGTTGATTCACCTCACCTTTAAAACTATAAAGCAACTCAATTAGGATCATTCAAGACTATTACTA
CCTCTGTATCATGGTATAAGGCGTTTTTGCAGTTCAAATTCAACTGAAAAACGTCTTATATT--ATGATACGGAGGAAGT
AAATCTTAGAAGGTAA---TACCTAGGAATAGAAAGTCATTCTTCATCTTTCAACTGCCTCTTTCAGTGGAAGCTTTTGC
CCAATCTCAAGACA------------------------------------------------------------------
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>chr3A_60
-----------------------------------------------------------TTAGAATCAACCTTCGATTAG
CCGGTTAAAATGGTAACAGAAGAAGATTAGTGCTAGTCAAAAAAAAAAACAGAAGAAGATTAGTGGAGTATACTTCAGAA
CTTGTAGAACTTTCCACAAGATCCGGCATACCACAGGCTTTCCGGCTCCCGCCGCCGCTCGACTCGCGACGTCGACCTTC
CAAGTTCCAACCCCCACAACGGTTGTGCAGCCGGCGCGTCCGTGGCTTGGGTAGTTTGTACGGGCCAGGCAGGGCAAGCC
AGCGCCAAATTTAGCCATGGCCGAAACAGAAACGCAACAGCACGATGGTCGATCTATATACATCGCCATGGCTTCCCCGG
GGTTGCAAAAATAGAGCTCCTTCTCTTTCCTTTCCTTTCCCCAGACGCAGCGGAGGGAAGGGGGAGATTAGAAAGGAAGG
GGAAGGAACAAGGATTAACTAAAGCTGCGTAGATTCGTGTACAACTAACACTTTGAGGTAGCAATCAAAGATCGGGCCGG
GAGAAGGCGGCGGCGAGCGACGGTGTGGGCGGTGGTGGCCGGCCGGCCGGCGGGGGAAGCGCAGCACACGCCCCTTCTCC
CTCTGCACGCTGCCTTGATCGATCCATTCGGTACGGCTCTTCTACCCTGATCGTGGAGAAAAAGAGTATCAAATCAATTC
CGCACTGCCAATGCCTTCGTCTGCACCCGCCGTCGCCGCCGAGCCGTCGTCACTGTCGTCCCTTCCCGGCCGCGACGGCT
GCTACTGACTCGACCTGGATGTAGTAGCTAGCTAGCTCTCGATTGACATGTTGTAACAAGCCAGAAACACAAACTGAGGT
ACGTC----GTGTCTCCGGTCGCCATTGATTTA---ATTTA----CAGTGCACATGCCACCTTATG--TGATCTGAGGAA
GTTGGTTTCATGCATGGATCGAATCTGTGAGTAGCCGGCCGTTTGCCACGGGCTACTGCCACCACCATCACCTGATGGCG
ATTGCGGTCGGCCACTGCCACGACCTCAAGCCGCCCGCCGTCCGCGGCCGGCACTACCGTCCGCACTCCGTCACCCAGCT
CGACCGGTCGCTGCTCGAACGCGACAATCAGGAACGGAATGCACTGTCACCGCAGCGTCGGTGTCTCTCCTCCCCGTGCT
TCACCACCGTGGCCGAACCCGCCTCTGACGACGCCCAGGACGACAAGAAGATGCCCCGCGTGGAGATCGTCGCGGGTCGC
CACGCCCGCGGCGTGCACGAGCTCATCGCGGAGGCCGCGGGCGCCATCGCGTCAGGGACGCGGCTTGTGCCAGCGCAGAG
CGGCCTCGGCGGGGCTTTGCTGCTCAAGGACGGCCGCTCCGGCGAGCACGTGGCGGTGATCAAGCCGCTAGACGACGCGA
CGTCTTCTCCATCGACCAACGTCGGAGGCGGCTACGAGAGCAAGGCCGTGCTCCGGGAGGTGGCCGCGTACCTCCTCGAC
CACGACGGGTTCGCCAGCGTCGCGCCGACGGCGCTGATCAAGATATCCCGCCCCGAGATGGAGACAACCGTGGCGTCCAT
CCAGCGCTTCGTGGCGCACCACTACGACGCCGGAGAGCTCGGCCCGTCTAGGTTCTCCGTGACCTCCGTGCACCGCGTAG
GAATCCTGGACGTGCGCCTCCTCAATATCGACCGCCACGCCGGCAACATCCTCGTCAAGAATCCGCCCACCAGCGACTGC
GCCGCGGATGGCAGCACGTCGGCGGCGCCGCTGGAGCTCGTGCCGATCGACCACGGCCTCTGCCTCCCTGAGGAGCTCGA
CGACCCGTACTTCGAGTGGCTGCACTGGCCGCAGTCGTCGCGACCATTCTCCGGCACCGAGCTCGACTACATCGCGTCGC
TGGACCCTTTCAAGGACGCCGAGATGCTCCGGGAAGAGCTGCCGTCCCTGACGGAACCGGCCATCCGGATCCTCACGCTG
TGCACCGTCTTCCTCCAGCGCGCGGCCGCGGCGGGGCTCTGCCTGGCTGACATCGGCGACATGATGACCCGCGAGTTCTC
GTCGGCGGAGGAGGGGCTGAGCGCGCTCGAGGCCCTCTGCAAGAAGGCCGTGGACTCCATCGACACCCAGTCGCCGAAGC
GCGTGTCGTTCGGGGAGCTGGGTGGCGAGGAGTGGGCGGCGTTCATGGAGAAGTTTGAGCAGCTGCTGCCGCCGGCGTTC
GAGGACAAGAAGCGCGGGGCTGGCGTTGCGCTGAATTAACGCCGACGACCGTGATGAAACGTACGTACGTTCTGCACGCA
GGGTGTACA--TGTATGCATACGTGTGTGGTGGTGATTTAACCAAAGAGAGAAGCCTTGCGTGTTACTCCTATATGTGTG
TGTGCGTACATTGGTCGAGGCCGTACGTGTACGTGAGCTTGTGCCGTCACATGCTACGGGGAGCATGCAGCTCTGGAACC
ATCTTCCGAAGGAGCTGACACCAAACGTTGTAGCGATGCCAACACAATGCATTGGACGACAAAC----------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
----------------------------------------------------------S----S-S--------------
----------------------------------------S---------------SS----------------------
------------------------------------S-------------------------------------S--S--
--S----------------------------------------------------------S------------------
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-------------------------------------------------------------------------S------
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----------------------------------------S---------------------------------------
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-----------------------------------------SSSS-----------------------------------
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-------------------------------------------------------------------------------S
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---------------------------------------------------------------------------S----
--------------------------S-----------------------------------------------------
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----------------------------------------S---------------------------------------
---------------S-------------------------------------S--------------------------
---------------S-----------------------------------------------------S----------
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----------------------------------------------S--------------------SSS----------
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----------------------------------------------------S---------------------------
---------------------------------------S----------------------------------------
----------------------------------------------S----SSSS--SSSS-SS------S---S-----
--------S-------SSS-----S---------------S----------------S---------S--S---------
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_59
---------------------------------------AGATGAGTCCTAGCCACCCG---------------------
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>reverse_2054
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-----------------------------------------------------TGGCGACATGATGACCCG---------
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>forward_2016
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-----------------------------------------------------------------------------GTG
TGCACCGTCTTCCTCA----------------------------------------------------------------
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>reverse_3231
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------------------------------CACGAAGGGTCCACGAAGAA------------------------------
----
