>input_sequence_56489
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-------------------------------------------------------------------------ATGGCCC
TCCGCGCGCTCGACAACACGCTGCCGGCCGCCGTGGCGGACCAGCGCCCCAAGAAGGCCGCCAAGCTGT-----------
-------TCGCCGTCACCCGCTCCCCCACCGGCAGCGGCGGCAACGGC---AAGAA------GCGCAACGACGAGAACTC
TGCGCCGACGCCCAAGCCCGCGTCGCCGGT---TGCGGCTGCAGCGGAGCCCGCCGTGGAGTACGTCCGGTCCGAGGACC
TGCTGCCCGTGCCCGCGCCCAAGGCCCGCGCCGCCGGCCTCCTGGCGGGGCTCGACTCCAAGGACTGGGTCAAGGTCTGC
GAGGCCCTCAACGACGCCCGCCGCCTCGCCATCCACCACCCCGCCCTCCTCGCCCCCATCCTGTACGTTCCTTTCCGTCT
CCTCTGATTTTGTCT-------TTTAATTTCTGTCGAATT---------CCGTTCTGGATCTGACCTGAGATCCGTCCG-
-------CGGGTGATGATTGGCAGGGAGAAGGTGGTGCTGGGGATGGTGAAGACGATGAAGAACCCGCGGAGCGCGGTGC
TCAAGACCTCCGTGATGGCCTGCACGGACGTCTTCGCGGCCTTCGGCAACCTCATCTCCTCGGCGTCCGCGGACGCGTTC
GACAAGCTGCTGCTGCAGCTGCTGCTCAAGGCGTCGCAGGACAAGCGGTTCGTGTGCGAGGAGGCCGAGAAGGCGATGCG
CGCCATGGCCACCTCCATGCCGCCCCTGCCGTTGCTGAAGAAGCTTAAATCCTACGTCCACCACGCCAACCTCCGGGTCC
GCGCCAAGGCCGCCGTCGCCATGGCGCACTGCGCCGCCAGGATGGTGCGTACCGCTTGCCGACTCAAATCCAGGCAG---
-CGGAACTCGATCTGTCTGTTTCGTTTTACTGACGCAGGAGATCATGTGTCGATTGGCAGGACGTGGAGACGATGAAGGA
CTTCGGGCTGCCGGCGCTGCTGCAGGTGGCCGCCGAGCTGCTGAACGACCGGCTGCCGGAGGCTCGCGAGGCCGCCCGCA
GCATCGTCGGCTCCACGCACGCCGCCTTCTTCT---TCAAGGAGGCCGCCGAGAAGGAGCAGGAGCAGGAGAAGATGGAG
AATGAGCTCCAGGAGCAGGAGG------------------------------AGGT---GAAGGAGAATGAGGAAGAAAT
GAAGAAG------------AAGGACGAGCTGTCTGCCGTGGCGGCTGCGTGGGAGAGCCTGTGCGCGCTGAGCCTGTCGC
CCATCTCGGCGCAGGCCGT--------------------------------------------------------CGCCA
AGATCGTCTCGCAGCCGCAGCCGCAGCCGCAGCCGCAATAA---------------------------------------
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>chr3A_1_TraesCS3A01G449000
AGCACCGCTTGACCTAGGCCGCCCTGAAGTCCCTTTTGTACAGTTTTCCGACAAGGACGCCGACACGAATTTAGATAGAA
TGCCTCTGTTTTT-GTTTTGCTATTGCTGGC-AGTTTTGGAGCTAGCATGAACGAACAATGAACTGGACACCATAAGTTG
TCTTGAGAAGAGATGATGTGAAATTTCGATAG-----CTGAAGTCGGGCTTGGTGTAAGCA-ATGTCGGCTTGTTATGTG
TA--AGAAGTAGGTAGCTCTTTGAAATGAAGGCATGCAGAAG---------------TTTTTTCCTCTTGCC--------
------TGCACTCTTTTCGAAAATGGAAGTCTCCTTTGGAGGCAGTGAGGCAGGGGTGGCAATGACAACTCCAGCAGGTG
GTCCACCATTCTCTGAGGTTTCTCTCGGTTATCTCGTGATCAATTTTCTTTCTAGAACTATCTCGTGATGGTGTCAGTAG
CAGTTGCATCTGTTATTTT-----TCCTTTTAAATTACCGAAATCGCGTTGAGATCGCTTCATTGTCTTTTCCATAGATC
GAAGTCTCAGTCAAGTGACTGAACATATAAAAAGATG--------------AAAGAAAATTTTACACGGATCTTTATGTA
AGAGCTATAAATATTACATCGACTAA--------------GACTGAGATTTAGCAATCTTGTTTCAATAAATTAGATTTT
C-----------TTTTAGGGGAATTCAGTAAATTAGGTACAGATCTCAAGACTG---------AGATTTCCTTCCTATTT
TTCCTTGACGCGAAACT----------------TTTTGTCTGGCAACGGTGCAAAAAGCAATCAAAGCCCGCACCGCGAA
GCAAA-CCC-CCAACGTTCACTTGCCAGTTCGAATCTCAATCTCTTCATAGCCGTTGCAGCCACCCCCCTCG---CCTCC
ACATTTTAAACTCCCACGCCGCCGCAAACCCTTCCTTCCTCCATCCATCCCATCCATACGCCGCAGCGCAAAGCCCTCCT
CCAAATCTCTCGTCCTCCCTCCCCATCTCGGCGTCTACATCTCCATCCATCGGCAAGCGACCCCATCCCACCCATGGCCC
TCCGCGCGCTCGACAACACGCTGCCGGCCGCCGTGGCGGACCAGCGCCCCAAGAAGGCCGCCAAGCTGT-----------
-------TCGCCGTCACCCGCTCCCCCACCGGCAGCGGCGGCAACGGC---AAGAA------GCGCAACGACGAGAACTC
TGCGCCGACGCCCAAGCCCGCGTCGCCGGT---TGCGGCTGCAGCGGAGCCCGCCGTGGAGTACGTCCGGTCCGAGGACC
TGCTGCCCGTGCCCGCGCCCAAGGCCCGCGCCGCCGGCCTCCTGGCGGGGCTCGACTCCAAGGACTGGGTCAAGGTCTGC
GAGGCCCTCAACGACGCCCGCCGCCTCGCCATCCACCACCCCGCCCTCCTCGCCCCCATCCTGTACGTTCCTTTCCGTCT
CCTCTGATTTTGTCT-------TTTAATTTCTGTCGAATT---------CCGTTCTGGATCTGACCTGAGATCCGTCCG-
-------CGGGTGATGATTGGCAGGGAGAAGGTGGTGCTGGGGATGGTGAAGACGATGAAGAACCCGCGGAGCGCGGTGC
TCAAGACCTCCGTGATGGCCTGCACGGACGTCTTCGCGGCCTTCGGCAACCTCATCTCCTCGGCGTCCGCGGACGCGTTC
GACAAGCTGCTGCTGCAGCTGCTGCTCAAGGCGTCGCAGGACAAGCGGTTCGTGTGCGAGGAGGCCGAGAAGGCGATGCG
CGCCATGGCCACCTCCATGCCGCCCCTGCCGTTGCTGAAGAAGCTTAAATCCTACGTCCACCACGCCAACCTCCGGGTCC
GCGCCAAGGCCGCCGTCGCCATGGCGCACTGCGCCGCCAGGATGGTGCGTACCGCTTGCCGACTCAAATCCAGGCAG---
-CGGAACTCGATCTGTCTGTTTCGTTTTACTGACGCAGGAGATCATGTGTCGATTGGCAGGACGTGGAGACGATGAAGGA
CTTCGGGCTGCCGGCGCTGCTGCAGGTGGCCGCCGAGCTGCTGAACGACCGGCTGCCGGAGGCTCGCGAGGCCGCCCGCA
GCATCGTCGGCTCCACGCACGCCGCCTTCTTCT---TCAAGGAGGCCGCCGAGAAGGAGCAGGAGCAGGAGAAGATGGAG
AATGAGCTCCAGGAGCAGGAGG------------------------------AGGT---GAAGGAGAATGAGGAAGAAAT
GAAGAAG------------AAGGACGAGCTGTCTGCCGTGGCGGCTGCGTGGGAGAGCCTGTGCGCGCTGAGCCTGTCGC
CCATCTCGGCGCAGGCCGT--------------------------------------------------------CGCCA
AGATCGTCTCGCAGCCGCAGCCGCAGCCGCAGCCGCAATAATTAATTTC-TCGTCGCGATTCTGTCCGCGATTTTGTAGT
GATGCATGCTATCTCGCATGATCTGC----CCATGTTCTAGCAGGCTCAAATTATTGGTGTTCCCAGTTCCCCTGATA-A
TAAATTATTTATT-----------------ACATGGTTCCCA--GTCACCGGAGTAGCCATTTCCCGGAACAAAAAATAT
GTGTCGCTCAGGAAATTCAGCAGCTTTTCACTGCCTCGCCGGAGAAAACTTTGACCCGTAGGTAGGCG---GCGTAGCTT
C----CATCGAAAACGACGA---GGAGGGATAAGAGCAGCTCCGCGTGCGTCCAATCTTTGAGCCAGCTCCGATCCAAAC
GCGTCGCCGTCCGGTGAACGAGCGAGTGATCCACGCGAGAGTGACCAGCT-----GGTGCTTGCTTGCTTCCGGGAATCG
AAATCCTCCTCATCATCTTCTCCTCTCCCCCATATCTCCTGTCTCCCTCCGCATTCACGCAGCAGCGGCGGCGGCGGCGG
CGACGCATGTCCCTGCTTGCGTTGTGCGTCGCGTCCTTGTTCATTCTTGATTCTTGATGGACGGGGGGCAGAGCGTCGCC
AAGCGGCATGGCGCGGCCGCG------GCCGCCGGCGCCGAGGAGGACCCTGACCGGCACCGTGCTCCTTCACCGGCCCA
CGAGGCGGCGGATGATCACGACGACGGCGACAAGAAGGCGCCTCGCAGGGGCAGCAACAGGCGCGTCGCCTCCCTCGACG
TCTTCCGTGGCCTCACCGTCGCAGTACGTGGCCCGGCCCTCCCACCG--------------------CCTGCTTAATTCC
TCTGCCA----CAAAGTTTCGTGTCCGTCTGATCCAAG---TTCCAACCGTGCGTGTTCGTTTTGGTGCT----GCAGCT
GATGATACTGGTGGACGGCGCCGGCGGCGAGTGGCCGGTCATCGGGCACGCGCCGTGGCACGGCTGCAACCTCGCCGACT
TCGTCATGCCCTTCTTCCTCTTCATCGTCGGCATGGCCATCCCCCTCTCCCTCAAGGTGCTCCATTTTACTCTCAATT
>chr3D_30
-----------------------------TCCCTTTTGTACAGATATCCAACAAGGACGCCGACACGAATCTAGATAGAA
TGCATCTGTTTTT-GCTTTGCTGGTGCTGGC-AGTTTTGGAGCTAGTACGAACGAACAATGAACTGGACACCTTAAGTTG
TCTTGAGAAGAGATG---TGAAATTTCGATAG-----CTGAAGTCAGGTTTGATGTAAGCATATGTCGGCTTGTTAAGTG
TA--AGAACTAGGTAGCTCTTTGAAATGAAGGCATTCAGAAG---------------TTTTTTCCTCTTGCCAGAGAAGA
TGAGCATGCACTCTTTTTGAAAAT-GAAGTCTCATTTGGAGGCAGTGAGGCAGGGGTGGCAATGACAACTCCAGCAGGTG
GTCCACCATTCTCTGAGGTTTCTCCCGGTTATCTCGTGATCAATTTTCTTTCTAGAACCATCTCGTGATGGTGGCAGTAG
CAGTTGCATCTGTTATTTTTTTTTTCCTTTTAAATTTTCTTTTCAATAAGGGTGTGGCTAGGTTTTTGAGACTTCGCG--
--------AGCCAAGTGATTGAGCATATGAAAAGATGAAAGAAAATATTAAAAAGAAAATTTTACAGGGATCTTCATGTA
AGATTTAACAAATATATATAGACTTCGTTAAGTCTCAGTTGACTGAGATTTAGCAATCCTGTTTCAATAAATTATATTAA
TAAATTATATCTTTTTAGGGGAATTCAGTAAATTAGGTACAGT------------AGATCTCAAGAGTTACTTCCTTCTT
TAATTTTTCTTGAGCGAAATTCGCTGGCGAAGCTTTTGTCTGGCAACGGCACAAAAGGTAATCAGAGCCCGCATCGCGAA
GCAAA-CCCTCCAACGTTCACTTGCCAGTTCGAATCTCAATCTCTTTATAGCCGTTGCAGCCACCCCCA-----TCCTCC
ACATTTTAAACTCCGACGCCGCCGCAAACCCTTCC----TCCATCCAT-CCATCCACACGCCGCAGCGCAA-GCCCTCCC
CCAAATCTCT---CCTCCCTCCGAATCTCTGCGTCTCCATCCATCAGCAA--GCAAGCGATCCCGTCCCACCCATGGCCC
TCCGCGCGCTGGACAACACGCTGCCGGCCGCCGTGGCGGACCAGCGGCCCAAGAAGGCCGCCAAGCTGCTCCCCACGGCG
CC------CGCCGTCACCCGCTCCCCCACCGGCAGCGGCGGCAACGGCAAGAAGCA------GCGCAACGACGAGAACTC
TGCGCCGCAGACCAAGCCCGCGTCGCCCGT---GGCGGCCGCGGCTGAGCCGGCCGTGGAGTACGTCCGGTCCGAGGACC
TGCAGCCCGTGCCCGCGCCCAAGGCCCGCGCCGCCGGCCTCGTGGCGGGGCTCGACTCCAAGGACTGGGTCAAGGTCTGC
GAGGCCCTCAACGACGCCCGCCGCCTCGCCATCCACCACCCGGCCCTCCTCGCCCCCATCCTGTAAGCTCCCCTCTGCCT
CTGAT--TTTTGTTC-------CTTCTCTTCTGGCGAATTATTTGGATCCCGTAACGGATCTGACTCGGACCTGCGGGTG
AATCATGG-----------GGCAGGGAGAAGGTGGTGCTGGGGGTCGTGAAGACGATGAAGAACCCGCGCAGCGCGGTGC
TCAAGACCTCCGTGATGGCCTGCACGGACGTCTTCGCGGCCTTCGGCAACCTCATCTCCTCGGCCTCGGCCGACGCGTTC
GACAAGCTGCTGCTGCAGCTGCTGCTCAAGGCGTCGCAGGACAAGCGGTTCGTGTGCGAGGAGGCCGAGAAGGCGATGCG
CGCCATGGCCACATCCATGCCGCCCCTGCCCCTGTTGAAGAAGCTCAGGGCCTACGTCCACCACGCCAACCTCAGGGTCC
GGGCCAAGGCCGCCGTTGCCATGGCGCACTGCGCCGCCAGGATGGTACGTACCGCTTGTCGACTCAAATC----CAG---
-CGGAACTCGATCTGTTTGTTTCGTTTTACTGACGCACGAGATCATGTGTGAATTGGCAGGACGTGGAGACGATGAAGGA
GTTCGGGCTGCCGGCGCTGCTGCAGGTGGCCGCGGAGCTGCTGAACGACCGGCTGCCGGAGGCGCGCGAGGCCGCCCGCA
GCATCGTCGGCTCCACGCACGCCGCCTTCTTCT---TCAAGGAGGCTGCCGAAAAA------GAGCAGGAGAAGAAGGAG
AATGAGCTAAAGGAGCAGGAGAAGGGGAAGAAGGAGCAAAAGGAGCAGGAGGAGGGGAAGAAGGAGAAGGAGGAAGAGGA
GGAGAAGGAGAAGGAGAAGAAGGCAGAGCCGTCGGGCGTGGCGGCGGCGTGGGAGAGCCTGTGCGCGCTGAGCCTGTCGC
CCATCTCGGCGCAGGCCGT--------------------------------------------------------GGCCA
AGATCGTCTCGCAGTTGCAGGCACAATAATCAACTG-----TTCGAATGATCGTCGCGATTCTGTCTGCGATTC-GTAGT
GATGCATGCTATCTCGCATGATCTGC----CCATGTTCCAGTAGGCTCAAATTATTGGTGTTTCCAGTCCCCCCGATA-A
AATTATCTACTACTATTACAGTTGAAGAAAACATGGTTCCCG--GTCTCAGGAGTGGCTATTTCCCGGAAC-AAAAAAAT
GCGTCGCTCAGGAAATTCAGCAGCTTTTCACTGCCTCGCCGGAAAAAACTCTGACCCAGGAGGGATGGTCCAAGACCTGT
AGGTACATCGAAAACGACGA---CGAGGAG-----------------GCGTCCTATCTTTCAGCTAGTTTCGGTCCAAAC
GTGTCGCTTTCCAGTGAGCGAGTG-GTGATCCACGCGAGAGTGACCAGCT-----GGTGCTTGCTTGCTTCCGGGAATCG
GAATCCT------CATCTTCTTCCT--CCCCATATCTCCTGTCGCCCTCCGCGTTCACGCAGCAGCAGCAGCAAAGGCGG
CGTCGCACGTTCCTTCC-------TGCGTCGAGTCCTTGTTCCTTTC---TTCTTGATGGACGGGGGCCAGAGCGTCGCC
AAGCGGCACGG------CGCG------GCCGCCGGCGCCGAGGAGGACCCTGACCGGCACCGTGCTCCTCCTCCGGTCCA
TGAGGCGGCGGATGATCAGGACGACGGCGACAAGAAGGCGCCTCGACAAGGG---AGCAGGCGGGTCGCTTCCCTCGACG
TCTTCCGTGGCCTCACCGTCGCTGTAGGTCCCCTCCACGGG----------------------------TGTTTAATTCC
TCACCCA----GTGAGTTTCATGTCTGCCTGACCCAAG---TTCCAACTGTGTTCGTTCGTTCGTGTCTGCGCCGCAGCT
GATGATACTGGTGGACGGCGCCGGCGGCGAGTGGCCGGTCATCGGGCACGCGCCGTGGCACGGCTGCAACCTCGCAGACT
TCGTCATGCCCTGCTTCCTCTTCATCGTCGGCATGGCCATCCCACTCTCCCTCAAGGT--------------------
>chr3B_30
-----------------------------TCCCTTTTGTACAGTTATCCGACAAGGACGCCGACACGAATTTAGATAGAA
TGCCTCTGTTTTTTGTTTTGCTGTTGCTGGCAAGTTTTGGAGCTAGCATGAACGAACAATGAACTGGACACCTTAACTTG
TCTCAGAGAC-GATG---TAAGATTTCGATAGCTGAACTGAAGTCAGGTTTGATGTAAGCA-ATGTCGGCTTGTTATATG
TGCCAGAACTATGGAGCTCTTTGAGATGAAGGCTTTGCTAGCAGGCGGAAGTTTTTTTTTTCCCCGCTTGCCAGAGAACA
TGAACTCTTTGGA-------------------------------------------------------------------
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-------------------------------AAATTACCGAATTCGCATTAAAACCGTTTCACTATCT------------
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-------------------------------------------------------------TTTCAATAAATTAGA----
---------------------------------------CAGATCTCAAGAGTACAGATCTCAAGAATTCCTTCCTATTT
TTT-------CGAAACT----------------TTTTGTCTGGCAACGGTACAAAAAGTAATCAAAGCCCGCATCGCGAA
GCAAACCCCTCCAACGTTCACTTGCCAGTTCGAATCTCAATCTCCTTATAGCCGTTGCAGCCCACCCCCCCTCCTCCTCC
CCATTTTAAACTCCGACGCCGCCGCAC----------------------------------------------CCCTCCT
CCAAATCTCTCATCCTCCCTCCGAATCTCGGCGTCTCCATCCATCAGCAA--GTGATCCCGT---TCCCACCCATGGCCC
TCCGCGCGCTCGACAACACGCTGCCGGCCGCCGTGGCGGACCAGCGCCCCAAGAAGGCCGCCAAGCTGCTCCCCACGGCG
CCCGCCGTCGCCGTCGCCCGCTCCCCCACCGGCAGCGGCGGCAACGGCAGGAAGCAGCAGCAGCGCAACGACGAGAACTC
GGCGCCGCTGACCAAGCCCGCGTCGCCTGTGGCGGCGGCCGCGGCGGAGCCGGCCGTGGAGTACGTCCGGTCCGAGGACC
TGCTGCCCGTGCCGGCGCCCAAGGCCCGCGCCGCCGGCCTCGTGGCGGGGCTCGACTCCAAGGACTGGGTCAAGGTCTGC
GAGGCCCTCAACGACGCCCGCCGCCTCGCCATCCACCACCCGGCCCTCCTCGCCCCCATCCTGTAAGCTCCTCTCTGTCT
CCTCCGATTTTGCCT-------GTTAATTTCTGTCGAATT---------CCGTTCTGGATCTGATCTGAGATCCCTTTGG
TTAA--------------TGGCAGGGAGAAGGTGGTGCTGGGGATCGTGAAGACGATGAAGAACCCGCGCAGCGCGGTGC
TCAAGACCTCCGTCATGGCCTGCACGGACGTCTTCACGGGCTTCGGCAACCTCATCTCCTCGGCCTCCGCGGACGCGTTC
GACAAGCTGCTGCTGCAGCTGCTGCTCAAGGCGTCGCAGGACAAGCGGTTCGTGTGCGAGGAGGCCGAGAAGGCGATGCG
CGCCATGGCCACCTCCATGCCGCCCCTGCCCCTGTTGAGGAAGCTTAAGTCGTACGTCCACCACGCCAACCTCAGGGTCC
GCGCCAAGGCCGCCGTCGCCATGGCGCACTGCGCAGCCAGGATGGTACGCACCGCTTGTCGACTCAAATC----CAGGCA
GCGGAACTCGCTCTGTTTGTTTTATTTTCCTCACCCGCGA-ATCATGTGTGAATTGGCAGGACGTGGAGACGATGAAGGA
GTTCGGCCTGCCGGCGCTGCTGCAGGTGGCGGTGGAGCTGCTGAACGACCGGCTGCCGGAGGCGCGCGAGGCCGCCCGCA
GCATCGTCGGGTCCACGCACGCCGCCTTCTTCTTCTTCAAGGAGGCCGCCGAGAAG------GAGCAGGAGCAGAAGGAG
AATGAGCTCAAGGAGGAGCAGGAAGAGGGGAAGGAGAATGAGAACGACGAGAAGGT---GAAGGAGAGTGAGGAAGAGGA
GGAGAAG------------AAGGAAGAGCCGTCGGCCGTGGCGGCAGCGTGGGAGAGCCTGTGCGCGCTGAGCCTGTCGC
CCATCTCGGCGCAGGCCGTGGCCAAGATCGTCTCGCAGTTGCAGGCCCAATAAATCCTATCTCGGCGCAGGCCGTGGCCA
AGATCGTCTCGCAGTTGCAGGCCCAATAATCAACTGCTCGATTCGATTGATCGCAGCGATTCTGTCCGCGATTC-GTAGT
GATGCATGCTATCTCGCATGATCTGCTGCCCCATGTTCTAGTAGCCTCAAATTATTGGTGTTTCCAGTTCCCCCGATATA
AATTATCTATTATTATTACAGTCGAAGAAAACATGGTTCCCGTAGTCACGGGAGTAGCCATTTCCCGGAACAAAAAAAAT
GTGTCGCTCAGCAAATCCAGCAGCTTTTCACTGCGTCGCCGGAAAAAACTTTGACCCAATGTTCCAAGATAGCGTAGCTT
C----CGTCGAAAACGACGACGAGGAGGGATAAGAAGAGCTCCGTGTGCGTCCAATCTTTCAGCCAGCTCCGATCCAAAC
GCGTCGCTGTCCGGTGAGCGAGTG-GTGATCCACGCGAGAGTGACCAGCTGGTGCGGTGCTTGCTTGCTTCCAGGAATCG
GAATCCTCCTCCTCATCTTCTTCCT--CCCCATATCCCCTGTCGCCCTCCGCGTT-----------------------GG
CGACGCACGTCTCCTGCTTTGCGTTGTC------------------------CTTGATGGACGGGGGCCAGAGCGTCGCC
AAGCGGCACGG------CGCGGCCGCGGCCGCCGGCGCCGAGGAGGACCCTGAGCGGCACCGTGCTCTA---------CA
TGAGGCGGCGGATGATCACGATGGTGGCGACAAGAAGGCGCCTCGCCGGAGCAGCAGCAGGCGGGTCGCCTCCCTCGACG
TCTTCCGTGGCCTCACCGTCGCTGTACGCAGCCCGGCCCCTTCCCCTTCCACACCAACACGACCACACCTGCTTAGTTCC
TATGCCACAAGCAAAGTTTCGTGTCTGCCTGATCCAAGCTCTTCCAACCGTGCGTGTTCGTTTCGGTGCT----GCAGCT
GATGATACTGGTGGACGGCGCCGGCGGCGAGTGGCCGGTCATCGGGCACGCGCCGTGGCACGGCTGCAACCTCGCCGACT
TCGTCATGCCCTGCTTCCTCTTCATCGTTGGCATGGCCATCCCCCTATCCCTCAAGGTGTTCCATTCTTACTCTGAA-
>chr1D_991
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---------------------------------------------------------------CATCCCACCCATGGCGC
TCCGCGCGCTGGACAACGCGTTGCCGGCCGCCGTGGCGGACCAGCGCCCCAAGAAGGCCGCCAAGCTGCTTTCCACGGCG
CCTACCGTCGCCGTCGCCCGCTCCCCCACCGGGAGT--------------------------------------------
---------------------------------------------GGAGCCGACCGTGGAGTACGTCTGGTCCGTGGACC
TGCTGCCCGTCCCCGGCCCCAAAGCCCGGGCCGCCGGCCTCGTCGTCGGGCTCGACTCCAGGGACTGGGTCATGGTCTGC
GAGGCCCTCAACGACGCGCGCCGCCTCGCCATCTACCACCCCGCCCTGCTCGCCCCCATCCTGTAAGTTCTTCGA--TCT
CCTCTGTCGTTGCTGCTCTTGGCTTCTGTTTTGGCGAATT---------CCGTTGGGGATCTGACCCGAGATTCGTCCGT
CCGTCCGCGGCTGCTGATTGGCAGGGAGAAGGTGGTGCTGGGGATCTTGAAGACGGTGAAGATACCGCGCAGCGCCGTGC
TCAAGACCTCCGTGATGGCGTGCACGAACGTCTTCGCGGCCTTTGGCAACCTC---------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S----------------------------------
----------------------S-------------------------------------------------S-------
---------------SSS---------------------------S--S---S---------------------------
--------S--------------------------S--------------------------------------------
-----------------S------S--------S----------------------------------------------
------------------------S---------------------------------S--------------S------
------------------------------------------S----S----S-----------S---SSS-SSSSSSSS
SSSSSSSS--S-------S---S-----S-------------------------------------S-------S-----
---SS--SS--SSS--S--S----SS--------------------------------S-------------------SS
S--------------------------------------------------S-S------------S-------------
--SS--SS-S----------------------------------------S-------S--------------S------
----------------------------------------------S----------------------S-S--------
--------------S--------------------SSSS---------S-------S--------------S--------
-----------S----------SS------------S----SSSSSS--SSS--------S-------------------
--------------------------------------------------------------------S-----------
------------------------------------------------------S-------------------------
-------SS-S----------------S-----S-----S--S--------S----------------------------
-----------------------------------------S--------------------------------------
-----------------------------------------------------------------S------S--S----
----------------------S---------------------------------------------------------
----------S--S-------------------------------S-----------------------S----------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
------------------------------SS--S-------------S------------------------S------
----------------------------------------------S-----------S-----------SSSS------
----------------S--------------------S------------SS----------------------------
S--------------------------------S-----------------------------S----------------
--------------------------------------------------------SSSSSS-------------S----
---------S-------------------------------------------------------------------SSS
-S----------------------S----S---S-----------S----------------------------------
---------------------------------------------------------------------------S----
--------------SS----S-S--SSSSSSSS-SSSSSS---SSS--S------------------------SS-----
-----------------------------------------S--------------------S----------S------
S-SSS-S-S-SS-----------------------------S-------S---------------------------S--
-------------------------------------------S-------------SSS---SSSS-------------
-----------------------------------SS-------S---------------S-------------------
-------S---------S----S-S-------------------------------------------------------
S----------S---------S-SSSS----------------S--------S-------------S--S--SSS-----
-------S------S-S-SS-SSS-------S----------S--SSSSS-----------------S------------
--------S--SSSSSS----------------------------------------------------S-S----S---
S---------------------------------------------S---------S------S----------------
----------------------S------S---------SSS-S--S---------------------------------
-------------------------S-S-----------------------------------S----------------
--------------------------------------------------------------------------------
------------S----------------------------------------------S------S-SSSSSSS-SS
>forward_209
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-----------------------------TTCGATAGCTGAAGTCGGGC-------------------------------
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>reverse_2219
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----------------------------------------------------------GCAGGAGCAGGAGAAGATGG--
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>forward_1052
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------------------------------------------------------------------------GCCCTCCT
CCAAATCTCTCG--------------------------------------------------------------------
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>reverse_2845
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--------------------------------------------CGTGCGTCCAATCTTTGAGC----------------
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