>input_sequence_56451
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--CCATAAAAGGGGGGTCCAAGGCAGCAAGCACGAACACCAAACAGAGATCCCGCATATTCCA-CTTCCATTGAGGTTGA
GGTTGAGGGTAGCAGTCGAGGCAGTACAAGTGTTCAAGAGAAGAGAACTTAACAGCCTGGTGCGTGCAATGGGGAGCTCA
GCATCCCTCTGTCTAGTTATCACCTTGTTGGCATTCTACTTCTTGGTTCCCTCCAACGCTATACCCCTCTCAAGTAAGGC
TCACGTCTCTA-ACAAAAACTGGTCCTAAGATGTTGTATCCTTATATGATCTGATTCGTTCCATTTGGGGTGTAGGAGTG
CAGAGACTGGTGCCCTTGCAACATGCCAGTGAGCAGGTGCCATGGATCGAAGGAAACACTCCTAAGCCAAAGGTATGGTA
GTGTTATTTTTTTTTTGGTGGAAAAGATGTATGGTAGTGAGCTTTGTTCTAGACTTCATAGGATTTGAAGGGTGTTTACA
GCAAAATCTTTGTACATGAAACTACGTTAAAAACAGTAATAATGTTCGTGTGAAAATGTAAATTTTAAGATATTTTTACA
TGAC--ATATTGTGGAACAGAGATAGTAACTTCTATGTTCTTGTTGTTGAACAAGTGATCGTTTCTCAAGTTGGTTTGGC
ACCTATAGAGATTCTGTGAATTGTTTCGGTTACTTCCT---GTAGCGTTTATCAAAGTGTGGAGAGTGCAACTTGGTTGT
TCATGCTTCATGGAATAGCTTTTTTTTTGGAAAAGGAGGAAGCTTCATGGGATAGCTAGATTTGTTAGTTCTTTGGGATT
CATGTGGTTCGGCGTACTCAGCTATCGAAAGTTTGATTATGGTGATACAGCGTACTCAGCTATCAAAAGTTTGATTATAC
GCGT-AAAAAAAGTTTGATTATAGTGATACACTGACACTATCTCCGTTTGAAATATATTTCAGATGGACATGGGTAGAGT
GATCCTAGAAGATGACGCGGTGAATGTCAGTGCAAGGATGGCTCTGGAGACGCAGGACTACGCGCCCTCGGGCCCGAACA
ACCACCACAAGCCACCGGGTTGGAACTAAGCTAGCGCATCCCGGGTCACAACTTTCATAAAGTTATATCGGTGGTTTCAT
TTAGTTAACCAGCCGTGTTGTGCTGATCTATTGTGTGATGTGATGCTCACGATCTTAATTTACACTAGGATATGCTTGAA
AGATGCCAACTTATTTTACCATTGTAAGAGTCATGTTAATTGAAATATGACGATATTA----------------------
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>chr5A_1_TraesCS5A01G228600
ATCCACCACTTTCCATAGTCTGTTTCAAAACGTGTCCACTGCTGCCTTGAAGAAATTGCAGCCGGTGGTTCACATGCTTG
TGCATGCCCCACTATGGATGATCCACAGACTTCCCAAACAAAATATCTAGATTTTGCCAGTGCA--TTGGATTGCACATA
CTGTTCGCAGCAAAAGTAGCATATTGCATTCTCTTGCACTCACCATTGGGTTTTGACACCAGACCAGTGTGAAG---GGC
TCCGAATAGATTTGATGACATGCAGTTGTCTATTTTTCATATGCATTAGATTTCATGTTCAGATTCACTCAATGTAGTTG
TCTATTTACTTTGGCATAAATCAGAAAAGAAAAGGAAAATGATGAATGTTTATTCGCAAACTTGTGTTCTTTTTGTGCTA
AAATTGTGTTCTTTGTTTTCTATTAGCACATCCTAATTTTGATGATGGAAATCTAAAGGGTACTAGAATATCCATTTATA
GATTAAGCTGTAG---AAAAAAAAGGAAATTCCAACGATTTGGTATCCATACAGAAGAATAAGTGTATGTTGCCATCGAA
AAGCCGTCCCA-TTTTTTCTGATAGTGATCGCC-----GCTAAGTTGAAAGTGCTTCCTAAACCTAATAGGAATAGTTAT
AGAAGAATCGTGCACGCATTTGACAACTT--TTTTTACTTAGTTTATAACAAATTAACTTCTA---TAATATAATTCAAA
AG-CACATCACATACATTGAAGTTTATCCCAAGCGCTCG----------------------CTCTCTATCTCTCTCGTTT
GTAGTTGCACCAAGACGGCGGAAGATAAACTTCCGAACAAATGACATGCAATTACCAATTTGAAACGGATCGATGAGATG
TGGACAAATGGGAGCACTCCAACAGCTAGTGGAGGTGGGGAAAGGCAGCAAAATGGTTGGCTACTGCCCAATTCCACCCA
TTGGACTTTGTGAATTTCCATTACCCCTACCTTTTTGACTTTGGTACCTAGAAACGAGTGATCTAGGCGGCATGACATGT
GCCCATAAAAGGGGGGTCCAAGGCAGCAAGCACGAACACCAAACAGAGATCCCGCATATTCCA-CTTCCATTGAGGTTGA
GGTTGAGGGTAGCAGTCGAGGCAGTACAAGTGTTCAAGAGAAGAGAACTTAACAGCCTGGTGCGTGCAATGGGGAGCTCA
GCATCCCTCTGTCTAGTTATCACCTTGTTGGCATTCTACTTCTTGGTTCCCTCCAACGCTATACCCCTCTCAAGTAAGGC
TCACGTCTCTA-ACAAAAACTGGTCCTAAGATGTTGTATCCTTATATGATCTGATTCGTTCCATTTGGGGTGTAGGAGTG
CAGAGACTGGTGCCCTTGCAACATGCCAGTGAGCAGGTGCCATGGATCGAAGGAAACACTCCTAAGCCAAAGGTATGGTA
GTGTTATTTTTTTTTTGGTGGAAAAGATGTATGGTAGTGAGCTTTGTTCTAGACTTCATAGGATTTGAAGGGTGTTTACA
GCAAAATCTTTGTACATGAAACTACGTTAAAAACAGTAATAATGTTCGTGTGAAAATGTAAATTTTAAGATATTTTTACA
TGAC--ATATTGTGGAACAGAGATAGTAACTTCTATGTTCTTGTTGTTGAACAAGTGATCGTTTCTCAAGTTGGTTTGGC
ACCTATAGAGATTCTGTGAATTGTTTCGGTTACTTCCT---GTAGCGTTTATCAAAGTGTGGAGAGTGCAACTTGGTTGT
TCATGCTTCATGGAATAGCTTTTTTTTTGGAAAAGGAGGAAGCTTCATGGGATAGCTAGATTTGTTAGTTCTTTGGGATT
CATGTGGTTCGGCGTACTCAGCTATCGAAAGTTTGATTATGGTGATACAGCGTACTCAGCTATCAAAAGTTTGATTATAC
GCGT-AAAAAAAGTTTGATTATAGTGATACACTGACACTATCTCCGTTTGAAATATATTTCAGATGGACATGGGTAGAGT
GATCCTAGAAGATGACGCGGTGAATGTCAGTGCAAGGATGGCTCTGGAGACGCAGGACTACGCGCCCTCGGGCCCGAACA
ACCACCACAAGCCACCGGGTTGGAACTAAGCTAGCGCATCCCGGGTCACAACTTTCATAAAGTTATATCGGTGGTTTCAT
TTAGTTAACCAGCCGTGTTGTGCTGATCTATTGTGTGATGTGATGCTCACGATCTTAATTTACACTAGGATATGCTTGAA
AGATGCCAACTTATTTTACCATTGTAAGAGTCATGTTAATTGAAATATGACGATATTAATAAAAGTTGGGCGTGGCTCAA
CCATGACCATTCTATCGATAAACCTATCGAGCGAACAGTTCTTCTCCCTAGTGCTTTCTTCCACCCAACGTTGTCTCCCC
TACTGTGCATTGGGCTGCCAATAGCTTGTTGTTCATCCATCGATATGTTGTTGTCATTGACTTCTCTTATGCACTAACCA
TCGCTGCGCCCACCACTGATGCCACCTTCTCATCCACCCCTAGCAGCAGTTTCCTGCGGGTGTCAATTTTAGTCGTCGGT
CGATGGTACATATCTCATGCCTTTTCTTCCTCTTCTTCACGCCCCCCTCACTTGAGTTGTATGTCTCCGTCCGCCCTACA
ATCATACGTCATTGAATCTCTCGCTTATTAAAACCAACTGGTGAATATTTATACATAGATTTCTTGATATTAAAGGATTA
GTGAACAAAACCAGAACTTGATGACAAAGATTAGTAAAAAAATGTTGATTGCAACGAGCTCAAAACTGTAACAAAAACGC
ACACTAGTGGCCAATAAAACCGCAACCTAGTTTGTTTAAGTAGCAAACTGCATCAAGGTTTGGAGTGCCTATTTGCTGCC
TTAAAGCGGCAAATACGACAGCAACTGCCCCAAGAGACCTCATAACGGGGTGGCGACTTAAGCAATCTATTATCACATTC
TATGCAAAAATCCAAAAAATATATTTCCAGGTAATATATTTTAAAATACTTCTAAAATTCAGTTTAAATAATGGTGACAT
ATTTAAAAAGAAATATATTCATGTACCCAAACAAAAAAAGTTCACTGCATATTTAAAAAATATTACTGCAAACAAAAATA
ACTATTCATGTGTTTTAAAATCACATGTTACAAAATTGTCTTCGTATATGTGGGAATATATGCTCGTATGATCTTAAAAG
CGTCATGTATTTCAAGAAATAAAAAGGTAACAAAAGGTGAAAACAATAAGCAAAAATGCTATATCCTAGTATGTGAGCAC
AACTAACATCACTCTAAG
>chr5D_1
ATCCACCACTTTCCATAATCTGTTTCAAAACGTGTCCACTGCTGCCTTGAAGAAATTGCAGCCAGTGGTTCACATGCTTG
TGCATGCCCCACTATGGATGATCCACAGACTTCCCAAACAAAATATCTAGATTTTGGCAGTGCATATTGGATTGCGCATA
CTGTTCGCAGCAAAAGTAGCATATGCATCC--CTTGCACTCAGCATTGGGTTTTGACACCAGACCACTGTGAAGGGCGGC
TCCGAATAGATTTGATGACATGCAGTTC-CTATTTTTCCTATACATTAGATTTCATGTTCAGATTCACTCAATGTAGTTG
TCTATTTATGTTGGCATAAATCAGAAAAGAAAAGGAAAATGATGAATGCTTACTCGCAAACTTGTGTTCTTTTTGTGCTA
AAGTTGTGTTCTTTGTTATCTATTAGCACATTCTAATTTTGATGATGGAAATTTAAAGGGTGCTAGAATATCCATTTATA
GATTAATCTGTAGAAAAACAAAAAGGAAATTCCAATGATTTGGTGTCCATACAGAAGAATAAGTGTATGTTACCATCGAA
AAGCCGTCCCATTTTTTTCTGATAGTGATCGCCGCTAAGCTAAGTTGAAAGTGCTTCCTAAACCTAACAGGAAGAGTTAT
AGTAGAATCGTGCACGCATTTGACAAC-T--TTTTTACTTAGTTTATAACAAATTAACTTCTACTATAATATAATTCAAA
AAACACATCACATACATTGAAGTTTACCCCAAGCTCTCTCTCTCACGCGCGCGC------TCTCTCTCTCTCTCTCGTTT
GTAGTTGCACCAAGACGGCAGAAGATAAACTTCCGAACAAATGACATGCAATTACCAATTTCAAACGGATCGATGAGATG
TGGACAAATGGGAGCACTCCAACAGCTAGTGGAGGTGGGGAAAGGCAGCAAAATGGTTGGCTACTGCCCAATTCCACCCA
TTGGACTTTGTGAATTTCCATTACCCCTACCTTTTTGACTTTGGTACCTAGAAACGAGTGCTCTAGGCGGCATGACATGT
GCCCATAAAAGGGGGGTCCAAGGCAGCAAGCACGAACACCAAACAGAGATCCCGCATATTCCA-TTTCCA------TTGA
GGTTGAGGGTAGCAGTCGAGGCAGTACAACTGTTCAAGAGAAGAGAACTTAACAGCCTGGTGAGTGCAATGGGGAGCTCA
GCATCCCTCTGCCTAGTTATCACCTTGCTGGCATTCTACTTCTTTGTTCCCTCCAACGCTATACCCCTCTCAAGTAAGGC
ACACATCTCTGTACAAAAACTGGTCCTAAGATGTTGTATCCTTATATGATCTGATTCGTTCCATTTGGGGTGTAGGAGTG
CAGAGACTGGTGCCCTTGCAACATGCCGGTGAGCAGGTGCCATGGGTCGAAGAAAACACTCCTAAGCCAAAGGTATGGTA
GTGTTTTTTTTTTTG-GGTGGAAAAGATGTATGGTAGTGAGCTTTGTTCTAGACTTCATAACATTTGAAGGGTGTTTACA
GCAAAATCTTTGTACATGAAATTACGTTAAAAACGGTAATAATGTTCGTGTGAAAATGTAAATTTTAAGATATTTTTACA
TGAC--ATATTGTGGAACAGAGATAGTAACTTCTATGTTCTTGTTGTTGAACAAGTGATCGTTTCTCAAGTTGGTCTGGC
ACCTATAGAGATTTTGTGAATTGTTTCGGTTACTTCCT---GTAGCGTTTGTCAAAGTGTGGAGAGTGCAACTTGGTTGT
TCATGCTTCATGGAATAGC-TTTTTTTTGGAAAAGGAGGAAGCTTCATGGAATAGCTAGATTTGTTAGTTCTTTGGGATT
CATGTGGTTTGGTGTACTCAGCTATCAAAAGTTTGATTATGGTGATACAGCGTACTCAGCTATCAAAAGTTTGATTATAC
GCGTAAAAAAAAGTTTGATTATAGTGATACACTGACACTATCTCCGTTTGAAATATATTTCAGATGGACATGGGTAGAGT
GATCCCAGAAGATGACGCGGTGAACGTCGGTGCAAGGATGGCTCTGGAGACGCAGGACTACGCGCCCTCTGGCCCGAACA
ACCACCACAAGCCACCGGGTTGGAACTGAGCTAGTGCAGCCCGGGTCATTACTTTCATAAAGTTATATCGGTGGTTTCAT
TTAGTTAACCAGCCGTATTGTGCGGATCTATTGTGTGATGTGATGCTCACGATCTTAATTTACGCTAGGATATGCTTGAA
AGATGCCAACTTATTTTATCATTGTAAGAGTCATGTTAATTGAAATATGACAATATTAATAAAAGTTGGGCGTGGCTCAA
CCATGACCATTCTATCGATAAATCTATCGACCGAACGGTTTTTCTCCCTAGCGCTTCCTTCCATCCAACGTTGTCTCCCC
TACTCTACATTGGGCTGCCAATAGCTTGTTGTTCGTCCATCGAT--GTTGTTGTCATTGACTTCTCTTATGCACTAACCA
TCGCTGCGGCCACCACTGATGCCACCTTCTCCTCCACCCCTAGCAGCAGTTTCCAGCGGGTGTCGATTTTAGTCGTCGGT
CGATGGTACATATCTCACGCCTTTTCTTCCTCTTCTTCATGCCCCCCTCGCTTGAGTTGTATGTCTCCACCCGCCCTACA
ATCATACGTCACTGAATCTCTCGCCTATTAAGACCAACTGGCGAATGTTTATACATAGATTTCTTGATACTAAAGGATTA
GTGAACAAAATGAGAACTTGATGACAAAGATTAGTAAAAAAATGTTGATTGCAAGGAGCTCAAAACTGTAACAAAAGCGC
ACACTAGTGGCCAATAAAACCGCAACCTAGTTTGCTTAAGTAGCAAACTGCATCAAGGTTTGGAGTGCCTATTTGCTGCC
TT-AAGCGGCAAATGCGACAGCAACTGCCCCAAGAGACCTCATAACGGGGTGGCGACTTAAGCAATCTATTATCTCATTC
TATACAAAAATCCAAAAAATATATTTCCAGATAATATATTTTAAAATACTTTTAAAATTCAGTTTAAATAATGGAGACAT
ATTTAAAAAGAAATATATTCATGTACCCAAACAAAAAATGTTCACTACATATTTAAAAAATATTCCTGCGAACAAAAATA
ACCATTCATGTGTTTTAAAATCATATGTTACAAAATTGTCTTCGTATATGTGGGAATATATGCTCGTGTGATCTTAAAAA
TGTCATGTATTTCAAGAAACAAAAAGGTAACAAAAGGTGAAAACAATAAGCAAAAATGCTATGTCCTAGTATGTGAGCAC
AACTAACATCATTCTAAG
>chr5B_35
----------------------------------TCCACTGCTGCCTTGAAGAAATTGCAGCCGGTGGTTCACATGCTTG
TGCATGCCCCACTATGGATGATCCACAGACTTTCCAAACAAAATATCTAGATTTTGGCAGTGCATATTGGATTGCGCATA
CTGTTCGCAGCAAAAGTAGCATATGCATCC--CTTGCACTCACCATTGGGTTTTGACACCAGACCGCTGTGAAG---GGC
TCCGAATAGATTTGATGACACGCAGTTGTCTATTTTTCATATGCATTAGATGTCATGTTCAGATTCACTCAATGTAGTCG
TCTATTTACTTTGGCATAAATCAGAAAAGAAAAGGAAACTGACGAATGTTTCTTCGCAAACTTGTGTTCTTTTTGTGCTA
AAATTGTGTTCTTTGTTTTCTATTAGCACATTCTAGTTC-GATGATGGAAATTTAAAGGGTGGTAGAATACCCATTTATA
GATTAAGCTGTAGAAAAACAAAAAGAAAATTCCAATGATTTGGTGTCCATACAGAAGAATAAGTGTATGTTGCCATCGAA
AAGCCGTTCCA-TTTTTTCTGATAGTGATCACC-----GCTAAGTTGAAAGTGCTTCCTAAACCTAATAGGAATAGTTAT
AGAAGAATCGTGCACGCATTTGACAAC-TTGTTTTTACTTAGTTTATAACAGATTAACCTCTA---TAATATAATTCAAA
AA-CATGTCACGTACAATGAAGTTTACCCCAAGCTCTCTCTCTCTCTATCTATCTATCTATCTATCTTTCTTTCTTGTTT
GTAGTTGCACCAAGACGGCGGAAGATAAACTTCCGAACAAATGACATGCAATTGCCAATTTCAAACGGAACGATGAGATG
TGGACAAATGGGAGCACTCCAACAGCTAGTGGAGGTGGGGAAAGGCAGCAAAATGGTTGGCTACTGCCCAATTCCACCCA
TTGGACTTTGTGAATTTCCATTACCCCTACCTTTTTGACTTTGGTACCTAGAAACGAGTGATCTAGGCGGCATGACATGT
GCCCATAAAAGGGGG-TCCAAGGCAGCAAGCACGAACACCAAACAGAGATCCCGCATATTCCATTTTCCA------TTGA
GGTTGAGGGTAGCAGTCGAGGCAGTACAATTGTTCAAGAGAAGAGAACTTAACAGCCTGGTGCGTGCAATGAGGAGCTCA
GCACCCCTCTGTCTAGTTATCACCTTGGTGGCATTCTACTTCTTGGTTCCCTCCAACGCTATACCCCTCTCAAGTAAGGC
ACACATCTCTGTACAAAAACTGGTCCTAAGATGTTGTATCCTTATATGATCTGATTCGTTCCCTTTGGGGTGTAGGAGTG
CAGAGACTGGTGCCCTTGCAACATGCCGGTGAGCAGGTGCCATGGGTCAAAGAAAACACTCCTAAGCCAAAGGTATGGTA
GTGTTATTTTTTGGG-GGTGGAAAAGATGTAAGGTAGTGAGCTTTGTTCTAGACTTCATTAGGTTTGAAGGGTGTTTACA
GCAAAATCTTTGTACACGAAATTACATTAAAAACAGCAGTAATGTT------AAAATGTAAAATTTAATATATGTTTTCA
TGACATATATTGTGGAACAGAGATAGTAACTTCTATTTTCTTGTTGTTGAACAAGTGATCGTTTCTCAAGTTTGTCTGGC
ACCTATAGAGATTTTGTTAATTGTTTCGCTTACTTCCTGCCGTAGCGTTTGTCAAAGTGTGGAGAGTGCAACGTGGTTGT
TCATGCTTCATGGAATAGC-TAGATGTGTTAGTTAGTTTTTCCGGAA----------AGATTTGTTAGTTCTTTGGGATT
CATGTGGTTCG--------------------------------------GCGTACTCAGCTATCAAAAGTTTGATTATA-
-----------------------GTGATACACTGACACTATCTCTGTTTGATATATATTTCAGATGGACATGGCTAGAGT
GATCCCAGAAGATGATGCGGTGAACGTCAGTACAAGGATGGCACTGGAGACGCAGGACTACGCGCCCTCGGGCCCGAACA
ACCACCACAAGCCACCGGGTTGGAACTGAGCTAGCGCAGCCCGGGTCACAACTTTCATAAAGTTATATCGGTGGTTTCAT
TTAGTTAACCAGTTGTGTTGTGCTGATCTATTGTGTGATGTGATGCTCATGATCTTAATTTACACTAGGATATGCTTGAA
AGATGCCAACTTATTTTACCATTGTAAGAGTCATGTTAATTGAAATATGACAATATTAATAAAAGTTGGGCGTGGCTCAA
CCATGACCATTCTATCGATAAACCTATCGAGTGAACAGTTCTTCTCCCTAGTGCTTCTTTCCACCCAACGTTGTCTCGCC
TGCTCTGCATTGGGCTGCCAATAG--------------------------------------------------------
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>SNPs
-----------------S--------------------------------------------------------------
--------------------------------------------------------S------------------S----
------------------------SSSSSSSS----------------------------------S-------------
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-------------------------------S--------------------S--------S------------------
------------------S----------------S--------S-----------------------------------
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---------------------------S----------------------------------------------------
-S------------------------S-------S---S----------------------------S------------
-------------------------------------------------------------S------------------
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----------------------------------------------------------------S-----SSSSSS----
-----------------------------S--------------------------------------------------
---------------------------S----------------------------------------------------
S---S-----S---------------------------------------------------------------------
---------------------------S-----------------S------S---------------------------
--------------SS--------------------------------------------S-------------------
---------------------S----------------------------------------------------------
---------------------------------------------------------------------------S----
-------------S------------------------------------S-----------------------------
-------------------S------------------------------S-----------------------------
------------S-------------S-----------------------------------------------------
--------------------------------------------------------------------------------
-----S------------------S-------------------------------------------------------
---------------------------S----------S-----------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------S-----------------------
----S-----------------------------S---------SS----------------------------------
--------S----------------------S----------------------S---------S---------------
-----------------S---------------------S---------S------------------SS----------
-----------S------------S------S---------S----S----------------------S----------
----------SS------------------------------------------S---------------------S---
----------------------------------S---------------------------------------------
--S-----------S-----------------------------------------------------------S-----
---S--------------------------S--------------------S----------------------S-----
--------------------------------------S-------S-----------------S----S----------
--S--------------------S-------------------------------------------S-----------S
S------------------S------------------------------------------S-----------------
-----------S------
>forward_668
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--------CGTGCACGCATTTGACAACT----------------------------------------------------
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>reverse_2025
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------------------------TGTCAGTGCAAGGATGGCTC------------------------------------
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>forward_1150
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----------AGCAGTCGAGGCAGTACAAG--------------------------------------------------
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>reverse_2883
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--AAAGCGGCAAATACGACAGC----------------------------------------------------------
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