>input_sequence_56433
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-----------------------------------------------------------ATGGAGCAGGAGCTGCGGGGC
GGCGGGGCGGTCAGGGCGCAGAGCACGCTGTGCTTCTCCGGCGCGCTGGTGGACGGGCCCCGAATCCAGCAGCTGCTCCT
CCACTGCGCCGCCGCGCTCGAGTCCAACGACGTGACGCTGGCGCAGCAGGCCATGTGGGTGCTCAACAACATCGCCTCCG
CGCAGGGTGACCCCAACCAGCGACTCACCTCGTCGCTGCTCCGCGGCCTCGTCGCGCGCGCCTGCCGGACCTGCGGCTCC
CCGCGCGCCGACAGCATGGGGCCGCCCCCGGCGCTGGGATCGCAGCGGGCCATGTCCGTGACGGAGCTCGCCGACTACGT
CGACCTCACCCCGTGGCACAGGTTCGGCTTCACCGCTTCCAACGGCGCCATCCTCCGCGCCGTCGCCGGGAGGGACGCCG
TGCACGTTGTTGACCTTGGAGTCACGCGCTGCATGCAGTGGCCCACGCTCATCGACGCGCTCTCTAAGCGGCCCGGGGGG
CCGCCGGCGCTCCGCATCACCGTGCCGTCCGTCCGGCCCGCCGGCCCGCCACTGCTCGGCGTGCCGGACGAGGAGATAGG
TCTCAGGCTGGCCAACTTTGCCAAGTCCAAAGGCGTGCACCTGGAGTTCAACGTCGTCAACAAGAGCACGGCCACGTCAT
CTCCATCTCCGACGAAGCTGCAGACGCTTTGCCAGGAGCTCGCCTGCGTCCTCTCCGACCAGTCGGCGCTGCGGCTAAGA
GACGGCGAGGCGCTCGTCGTGAACTGCCAGAGCTGGCTCCGGCACGTCGCGCCGGGCTCGAGGGACGGCTTCGTGGACGC
GGTCCGGGCGCTGGACCCGTGCCTGGTCACCGTGACCGACGAGGACGCCGACCTGGACTCGCCGAGCCTGGCCACGCGCA
TCGCGGGCTGCTTCAACTTCCACTGGATCCTCTTCGACGCGCTCGACACATCCGCGCCGAGGGACAGCCCGCGGCGGCTG
GAGCACGAGGCGGCCGTGGGCCAGAAGATCGAGAGCGTCGTCGGCGCCGACGGCACCGAGCGGTCCGAGTCCGGCGCGAG
GCTCGCGGAGAGGATGCGACGGAAAGGGTTCGCCGGCGCGGGGTTCGGCCAGGACGAGGTGGCCGAGGTGCGGCACCTGC
TGAGCGAGCACGCGACGGGGTGGGGCGTGAAGCGGGAGGAGGACATGCTAGTGTTCACGTGGAAGGGGCATGCAGCCGTG
TTCACCACTGCCTGGGCGCCCAACTAA-----------------------------------------------------
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>chr1B_1_TraesCS1B01G332000
CGGGGGCCGAAGTCGTTTTTCCTATCCGCTCTCGGCATAGATCGGGTCCACACATATGCTTGTAAACTCCGCAAGAAGTA
ACTGAGGATTTTTTTAACACAATACAGACGCAAGCACTCATACATACGCGTATATACTCACTCCTATGAATGCACACACG
TACACCCTATCCTATGAGTATCTCCGAGAGACTGAACCGACATATCATCTTGAGATTTATGTAGTCATCATAGACGCCTC
GTCGTTGACGGGAACGTCTCCTCCCACTGAAAGTGAATCGCCAGAATACTGAAATAAATACAGAAATAATACGAGCACCA
GTATTTGAACTCTGATGGGCTGTGTATACCACTGTCCTTCTAACCATCCAAGCATAGGTTGGTTCACAGTAATTGAGAAT
TGTATGCATCGATTGATGCAGAGGCCATGGGTTTTCACTCTCTTCTGGGGGAAAAGAAAAAGCCCTAAGCGTAGCCCTCA
ACTTAAAAGTTGTCTAAAATTATTGTTCCAAACGAGGGCTTGTTGGGCATATCTTTTCAAAGGGGAGCTATTGAGAAGAA
ATTTTGGAAGAGGGAATTTCTGAGAAGAATCTGCAACTAACAAAACTTCCAACAACCCTATAGTCTAATCAGTTCAGAGT
TCAGACACAATCAGACAAAGCAAGGCGTTAAGAATGATAGCACGTTGTCCTTTCACCCC---GTGGAAAGAGTCAAGAAT
TCGATCCATTTTCTCCACGGAAACGAAGAGCGAATATTTCACAGAAAGTCCTATAAATAGGCC-AGGCCATTCCAACTTG
CAAACCAAAACAACCTACAATAAT---CACCATCTGTAGCGATTGGCCTTCTAGGG------ATTTGCCTCCGTTCACAG
CTCCTGATCAGGGGTCAAAACTCTAGACCAGATGATCCCAACCTGCCCAATCATGTAGTCTGACAGGTGTTACAGTCTCT
TCGTCCAAAATCTTGTA---C---CAGTGCGTGTCAGTAGGTCACGAGGTCATCTCGGTATGGAGCAGGAGCTGCGGGGC
GGCGGGGCGGTCAGGGCGCAGAGCACGCTGTGCTTCTCCGGCGCGCTGGTGGACGGGCCCCGAATCCAGCAGCTGCTCCT
CCACTGCGCCGCCGCGCTCGAGTCCAACGACGTGACGCTGGCGCAGCAGGCCATGTGGGTGCTCAACAACATCGCCTCCG
CGCAGGGTGACCCCAACCAGCGACTCACCTCGTCGCTGCTCCGCGGCCTCGTCGCGCGCGCCTGCCGGACCTGCGGCTCC
CCGCGCGCCGACAGCATGGGGCCGCCCCCGGCGCTGGGATCGCAGCGGGCCATGTCCGTGACGGAGCTCGCCGACTACGT
CGACCTCACCCCGTGGCACAGGTTCGGCTTCACCGCTTCCAACGGCGCCATCCTCCGCGCCGTCGCCGGGAGGGACGCCG
TGCACGTTGTTGACCTTGGAGTCACGCGCTGCATGCAGTGGCCCACGCTCATCGACGCGCTCTCTAAGCGGCCCGGGGGG
CCGCCGGCGCTCCGCATCACCGTGCCGTCCGTCCGGCCCGCCGGCCCGCCACTGCTCGGCGTGCCGGACGAGGAGATAGG
TCTCAGGCTGGCCAACTTTGCCAAGTCCAAAGGCGTGCACCTGGAGTTCAACGTCGTCAACAAGAGCACGGCCACGTCAT
CTCCATCTCCGACGAAGCTGCAGACGCTTTGCCAGGAGCTCGCCTGCGTCCTCTCCGACCAGTCGGCGCTGCGGCTAAGA
GACGGCGAGGCGCTCGTCGTGAACTGCCAGAGCTGGCTCCGGCACGTCGCGCCGGGCTCGAGGGACGGCTTCGTGGACGC
GGTCCGGGCGCTGGACCCGTGCCTGGTCACCGTGACCGACGAGGACGCCGACCTGGACTCGCCGAGCCTGGCCACGCGCA
TCGCGGGCTGCTTCAACTTCCACTGGATCCTCTTCGACGCGCTCGACACATCCGCGCCGAGGGACAGCCCGCGGCGGCTG
GAGCACGAGGCGGCCGTGGGCCAGAAGATCGAGAGCGTCGTCGGCGCCGACGGCACCGAGCGGTCCGAGTCCGGCGCGAG
GCTCGCGGAGAGGATGCGACGGAAAGGGTTCGCCGGCGCGGGGTTCGGCCAGGACGAGGTGGCCGAGGTGCGGCACCTGC
TGAGCGAGCACGCGACGGGGTGGGGCGTGAAGCGGGAGGAGGACATGCTAGTGTTCACGTGGAAGGGGCATGCAGCCGTG
TTCACCACTGCCTGGGCGCCCAACTAAAGCTGGTAGCTTAATCCGATATCACCATTAGCGACTAAAACTACTGATAGGAA
TGCATGTAGCCATGAGAGAGTAGTTTTAGGTTGATAATGTAGCTCAGAAAGGATCAAA-TGA------CATGACACATAA
ACCGTCTTCTTTATTGTTCATCAATGG-AAACGGTGGAAGAACGGATCAATATTCAATAGAAGAAATGGGAGCCTTCTTG
CATCATGAATTTGTTGTATTGTCTCGGAACATTGGGTTGAACAGTTGAAAACACACATGCTCATGCATAGGGGTGATTTC
TTTTTTTGAGGGGTACATAGGGGTGAGATTAACCTTGAGTACATACGGATGAATATTTAGCTAGATATATAGTGTGTGAG
AATAAAAAGCAAAAACAAATATATCATAATAAGAACAATATACTCCCTCTGTACCGAAATCCTTATGTGCAGTCACTTAT
GGAGTGACTATACCACATGCAACCAATCTTTTGAAGCTCTCCATCCTGCGATCTTGATCAACGGCTTCACAATCGTTCCT
TCCACCTCCAACCACTCCTCCCCCTTCTCCAAACATTTACTCTCCACGGTTGGCGACATTACATCGTTCGAGGTTCTGCC
GAGCTCTAGTCGGTGATGTCGTGGCCAAACACGGTGTTCGCGTCTCGAGGTTGGGTGCTACCTAATCTTATCAATGGTTA
AACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTCAGGCCTGCTCCGGTGACACCACAGCCAACGGTGTCCTTCCCGCCTTCGCCGCGGTCCTGGC
GAGGCCTTGCCAAGGGGTGATGTGGCCTGTATCAGCCTCAAAGCGTGTGTCAAATTTGACTATCGTCTGAAAAAA
>chr1A_388
AGTACTTAAGGATTATG---------------------------------------------------------------
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----TGCATCGATTGATGCAGAAGCCATGGATTTTCACTCTTTTTTGGGGGAAAAGAAAAAGCCCTAAGCGTAGCCCTCG
ACTTAAAAGTTGTCTAAAATTATTGCTCCAAACAAGGGCTTGTTGTGCATATCCTTTCAAACGGGAGCTATTGAGAAGAA
ATTTTGGAAAAGGGGATTTCTGAGAAGAATCTGCAACCAACAAAACTTGCAACAACCCTATAGTCTAATCAGTCCAGAGT
TCAGACACAATCAGACAAAGCAAGGCGTTAAGAATGATAGCACGTTGTCCTTTCA---C---GTGGAAAGAGTCAAGAAT
TCGATCCATTTTCTCCATGGAAACGAAGAGCGAATCTTTCACAGAAAGTCCTATAAATAGGCCAAGCCCACTCCAACATG
CAAACCAAAACAACCTACAATAATAATCACCCCCTGTAGCAATTGGCCTTCTAGGGATTTGCATTTGCCTCCGTTCACAC
CTCCTGATCAGACGTCAAAACTCTAGACCAGACGATCCCAACCTGCCCAATCATGTAGGCTGACAGGTGTTACAGTCCCT
GCGTCCAAAATCTTGTA---CTACCAGTACGTGTCAGTAGGGCACGAGGTCACCTCGGCATGGAGCAGGAGCTGCGGAGC
GGCGGGGCGGTCAGGGCGCAGAGCACGCTGTGCTTCTCCGGCGCGCTGGTGGACGGGCCCCGGATCCAGCAGCTGCTCCT
CCACTGCGCCGCCGCGCTCGAGTCCAACGACGTCACGCTGGCGCAGCAGGCCATGTGGGTGCTCAACAACATCGCCTCCG
CGCAGGGGGACCCCAACCAGCGCCTCACCTCGTCGCTCCTCCGCGGCCTCGTCGCGCGCGCCTGCCGGACCTGCGGCTCC
CCGCGCGCCGACAGCATGGGGCCGCCCCCGGCGCTGGGATCGCAGCGGGCCATGTCCGTCACGGAGCTCGCCGACTACGT
CGACCTCACCCCGTGGCACCGGTTCGGCTTCACCGCCTCCAACGGCGCCATCCTCCGCGCCGTCGCCGGGAGGGACGCCG
TGCACGTTGTGGACCTTGGAGTCACGCGCTGCATGCAGTGGCCCACGCTCATCGACGCGCTCTCTAAAAGGCCCGGGGGC
CCGCCGGCGCTCCGCATCACCGTGCCGCCCGTCCGGCCCGCCGGCCCGCCGCTGCTCGGCGTGCCGGACGAGGAGATAGG
TCTCAGGCTGGCCAACTTTGCCAAGTCCAAAGGCGTGCGCCTGGAGTTCAACGTCGTCAACAAGAGCACGGCCACGTCAT
CTCCATCTCCGACGAAGCTGCAGACGCTTTGCCAGGAGCTCGCCTGCGTCCTCTCCGACCCGCCGGCGCTGCGGCTAAGA
GACGGCGAGGCGCTCGTGGTGAACTGCCAGAGCTGGCTCCGGCACGTGGCGCCGGGCTCGAGGGACGGCTTCGTGGACGC
GGTCCGGGCGCTGGACCCGTGCCTGGTCACCGTGACCGACGAGGACGCCGACCTGGACTCGCCGAGCCTGGCCACGCGCA
TCGCGGGCTGCTTCAACTTCCACTGGATCCTCTTCGACGCGCTCGACACGTCGGCGCCCAGTGACAGCCCGCGGCGGCTG
GAGCACGAGGCGGCCGTGGGCCAGAAGATCGAGAGCGTCGTCGGCGCCGACGGCACCGAGCGGTCCGAGTCCGGCGCGCG
GCTCGCGGAGAGGATGCGGCGCAAAGGGTTCGCCGGCGTGGGGTTCGGCGAGGACGAGGTGGCCGAGGTGCGGCACCTGC
TGAGCGAGCACGCGACGGGGTGGGGCGTGAAGCGGGAGGAGGACATGCTGGTGCTCACGTGGAAGGGGCATGCAGCCGTG
TTCACCACTGCCTGGGCGCCCAACTAAAGCTGGTAGCTTAATCCGATACTACCATTAGCGACTGAAACTACTGATAGGAA
TGCATGTGGCCATGAGAGAGTAGTTTTAGGTTGATAATGTAGCTCAGAAAGGATCAAAATGA------CATGACACATAA
ACCGTCTTCTTTATTGTTCATCAATGGAAAACGGTGGAAGAATGAAT-AATATTCAATAGAAGAAATGG-AGCCTTCTTG
CATCATGAATTTGTTCGAGTTTCTTGGAACA-------------------------------------------------
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>chr1D_534
TTTTGAAAG-----------------------------------------------------------------------
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-------------------------------------------------------------GGGGAGCTATTGAGAAGAA
ATTTTGGAAGAGAGAATTTCTGAGAAGAATCTGCAACCAACAAAACTTCCAACAACCCTATAGTTTAATCAGTTCAGAGT
TCAGACACAATCAGACAAATCAAGGCGTTAAGAATGATAGCACGTTGTCCTTTCA---CCCCGTGGAAAGAGTCAAGAAT
TCGATCCATTTTCTCCATGGAAACGAAGAGCGAATCTTTCACAGAATGTCCTATAAATAGGCCAAGCG-ATTCCAGCATG
CAAAACAAAACAACCTACAATAAT---CACCTCCTGTAGCGATTGGCCTTCTAGGGATTTGCATTTGCCTCCGTTCACAC
CTCCTGATCAGGGGTCAAAACTCTAGACCAGACGATCCCAACCTGCCCAATCATGTAGGCTGACAGGTGTTACAGTCCCT
TCGTCCAAAATCTTGTACTCCTACCAGTACGTGTCAGTAGGGCACGAGGTCACCTCGGCATGGAGCAGGAGCTGCGGAGC
GGCGGGGCGGTCAGGGCGCAGAGCACGCTGTGCTTCTCCGGCGCGCTGGTGGACGGGCCCCGGATCCAGCAGCTGCTCCT
CCACTGCGCCGCCGCGCTCGAGTCCAACGACGTCACGCTGGCGCAGCAGGCCATGTGGGTGCTCAACAACATCGCCTCCG
CGCAGGGGGACCCCAACCAGCGCCTCACCTCGTCGCTCCTCCGCGGCCTCGTCGCGCGCGCCTGCCGGACCTGCGGCTCC
CCGCGCGCCGACAGCATGGGGCCGCCCCCGGCGCTGGGATCGCAGCGGGCCATGTCCGTGACGGAGCTCGCCGACTACGT
CGACCTCACCCCGTGGCACCGGTTCGGCTTCACCGCCTCCAACGGCGCCATCCTCCGCGCCGTCGCCGGGAGGGACGCCG
TGCACGTAGTGGACCTTGGCGTCACGCGCTGCATGCAGTGGCCCACCCTCATCGACGCGCTCTCTAAGCGGCCCGGGGGC
CCGCCGGCGCTCCGCATCACCGTGCCGTCCGTCCGGCCCGCCGGCCCGCCGCTGCTCGGCGTGCCGGACGAGGAGATAGG
TCTCCGGCTGGCCAACTTCGCTAAGTCCAAAGGCGTGCACCTGGAGTTCAACGTCGTCAACAAGAGCACGGCCACGTCAC
CTCCATCTCCGGCGAAGCTGCAGACGCTTTGCCAGGAGCTCGCCTGCGTCCTCTCCGACCCGTCGGCGCTGCGGCTAAGA
GACGGCGAGGCGCTCGTCGTGAACTGCCAGAGCTGGCTCCGGCACGTCGCGCCGGGCTCGAGGGACGGCTTCGTGGACGC
GGTCCGGGCGCTGGGCCCGTGCCTGGTCACCGTGACCGACGAGGACGCCGACCTGGACTCGCCGAGCCTGGCCACGCGCA
TCGCGGGCTGCTTCAACTTCCACTGGATCCTCTTCGACGCGCTCGACACGTCGGCGCCCAGGGACAGCCCGCGGCGGCTG
GAGCACGAGGCGGCCGTGGGCCAGAAGATCGAGAGCGTCGTCGGCGCCGACGGCACCGAGCGGTCCGAGTCCGGCGCGCG
GCTCGCGGAGAGGATGCGGCGCAAAGGGTTCGCCGGCGTGGGGTTCGGCGAGGACGAGGTGGCCGAGGTGCGGCACCTGC
TGAGCGAGCACGCGACGGGGTGGGGCGTGAAGCGGGAGGAGGACATGCTGGTGCTCACGTGGAAGGGGCATGCAGCCGTG
TTCACCACTGCCTGGGCGCCCAACTAAAGCTGGTAGCTTAATCCGATATCACCATTAGCGACTGAAACTACTGATAGGAA
TGCATGTAGCCATGAGAGAGTAGTTTTAGGTTGATAATGTAGCTCAGAAAGGATCAAAATGACATCGACATGACGCATAA
ACCGTCTTCTTTACTGTTCATCCATGG-CAACGGTGGAAGAACGGATCAAAATTCAATAGGAGAAGTGGGAGCCTTCTTG
CATCATGAATTTGTTGTATTGTCTCGGAACATTGGGTTGAACAGTTG--AACACACATGCTCATGCATAGGGGTGA----
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>SNPs
S-SS-SSS-SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS------------------S-------S----------S--S----------------------------------S
-------------------------S-------S-----------S-------S--------------------------
-------------------------------------S------------------------------------------
-------------------------------------------------------SSS----------------------
-----------------S-----------------S------------------------------S----------S--
-------------------------------SS----------------------------------------------S
--------------------------------S-------------------------S------------------S--
----------------------------S------------S----------S-----S------------------S--
--------------------------------------------------------------S-----------------
---------------------------------S----------------------------------------------
-------S--------------S--------------S------------------------------------------
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-------------------S----------------S-------------------------------------------
----------S--------------------------------------------------------------------S
--------------------------------------------------S-----------------------------
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------------------------------------------------------------S-------------------
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-------------------------------------------------S--S-----S---------------------
------------------------------------------------------------------------------S-
------------------S--S----------------S----------S------------------------------
-------------------------------------------------S---S--------------------------
---------------------------------------------------------------S----------------
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-----------------------------------------------SS---------------------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_168
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--------------------------------------------------------------------AATGCACACACG
TACACCCT------------------------------------------------------------------------
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>reverse_1451
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----------TGACCTTGGAGTCACGCG----------------------------------------------------
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>forward_202
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----------------------TCCGAGAGACTGAACCGACA--------------------------------------
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>reverse_2214
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-----------------------------------------------------TTCACGTGGAAGGGGCATG--------
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>forward_431
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-----------ATTGATGCAGAGGCCATGGG-------------------------------------------------
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>reverse_2304
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---------------------------------------------------------------AAAACTACTGATAGGAA
TGCATGTAGC----------------------------------------------------------------------
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