>input_sequence_56398
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----ATGGAGGTCCGCGCTACGACTTCCCATAGAGGAAAACTTCCGAGGACGATGACGACGGCGACGATGGGGCGCAACT
CGGCGGCG---GTACTCGTCGTGCTTGCCTGCCTCGTTTCCCTCGCATCGGCCCAGCAGGTCAAGACGACGGACACGCGC
TGGAGCTACCGTCTTCCGCTGCCCGACGGCGTCAGCGGCGCCGAGAGCCTCGCGTTCGCCGGCAAGGACGGGATCTACAC
CGGCGTCTCCGACGGGCGTGTCCTCAGGTGGGGCGGGAGCGCCGCCGGCTGGAGCACCTTCGCCTACAATGCCAACTACA
GGTCGGTCGGTGTAATTAAAAGCTCAAAATCGTGTTGTCAAGTGGG--------------TCGATCGCGATTTAAAATTT
AGCTTACGTGTGACATGTGGGACGTGTGTAGGAAAATTCCTTTGTGCTCGGATTCTGGGGTGCCGTCGGAAGAAAAGGAG
AGCATATGCGGGCGGCCGCTGGGTGTCCGGTTCAACAGGAAGACCGGCGAGCTCTACATCGCCGACGCCTACTTGGGGCT
CATGAAGGTCGGCCCGGAAGGCGGCGAAGCCCAGGTGCTAGCGACGGAGGCGGACGGCGTCCCCTTCCACTTCCTCAACG
GCCTAGACGTCGATCAGGCCACCGGCGATGTCTACTTCACCGACAGCAGCACCAACTATCCCCGGAGGTACCG-------
-TGCACGCCCGATCACGCCTTAATTTTATTTTATTTTTGTAACATCAACCCCGGAGATGACGAATCA------A------
-------------------CGTGCAGGTTTAACACGGAGATCATCATGAACGCCGACGCGACCGGCCGCCTGCTCAAGTA
CGACGCGCGGACGAAGCTCGTCACGGTGCTCGAGGCGGACCTGCCGTACCCGAACGGCGTCACGCTCAGCCGCGACAGGA
CGCACCTGGTGGTGGCGCACACGGTGCCGTGCCAGGCGTTCCGGTACTGGCTCAAGGGGCCCAAGGCCGGGCAGTACGAG
CTCTTCGCCGACCTGCCGGGGTACCCGGACAACGTGCGGCGCGACGGGCAGGGCGGTTTCTGGGTGGCGCTCAACCAGGA
GAAGGCGCGGCTCAACGCGA---CGGCGGCTCCGGTGAAGCACTTGGTCGGCGTCCGTCTCGGCGCCGACGGCGTGGAGG
TCGAGGAGTTGACGGCC---------------------------------------------------------------
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----------------------------------GCCAGGGGCGTGACGCTCAGCGAGGTGGCGGAGCAGAGCGGCAACA
AGTTGTGGTTGGGTTCCGTCGAGCTTGATTATATAGGCCTCTTAGTTTGA------------------------------
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>chr3D_1_TraesCS3D01G256900
TTTGCAGAAACAAAGGGTCAAAGAAGGCTTTGGACACCCTA-CTGAAGAACTGGGA------ATCAATGGATGATGACTT
CCCATGTACTGTCTGAATAAAAATTCCTCT--TTCCAACTTAAAGATTGCTCATGTGTTAAGCGCATACTCACACTACAT
GACGGCTAAAA-TTTCGCGAAGTGCTGAAAGCTACCATGGCACAGGGTATATGCAAAATACGGACTGAACGACCTCCTTT
CACTAAATCCCCTTCACCTACCCCGTCCGAAGACCCAATCCCCAAAACCACGACACAATCAGCCATGGCAAGCAAGCGAT
CTCGGGAATCCAGGGACTAATCGAAGCCCAGAGGGGTCGGGTCCTACTCCCG-CCCCCATGCTCGAGCTCCACGAAATGG
GCTCCCAAGCCGGGGCCTCAGCTACAGCTAGCGTTTCTGGCTCGGGTAAGCGGACCCGG---GACGGAGGAGGCGGAGAG
GTAGAGGGCGTAGGGCGGGAGACTGACCTCGTCTGCGGCGGCCGGCGGCGAGCGGCGGTGATGGGTCGCGGGGAGGGGAC
CCGCAACCCGATCCGGTGGGGGCTTAGCAGATCGGAGCCGGGGCCGAGGAGGCGTGGGTTGCGAGCCGCGACCCATTTCG
CGAGTGCAGGGTGGTGGTTTTGTCGCCGTGGTGGGTTTCGGGTCCGCGCCTGCGCGATGGACGGCCCCGATGCGGCCGCG
ACAGCCAGCTTCTCGGTCGGGCGTGGTTGGCCCGGACCCCAGACTACTTTGGTTAGTGGTAGCCA-GGTTGGAGTGGGTG
TGGGTGGACCGAGGCGAACAATACCTGAACCGCGCGGGTTCGGGCCGAACTCAGCAGAGACCACAAACGAAACGGGCTCG
GTCGGACGTACGGGGGCAGTCCGTCACGTCACGTCACGG----------------------TTTTACTTACAGTTGGTGT
AGGATTTTACGTAGAGTTCGTGGAGGATTGCTACCGTGTCC-------GATGTGATCCATGGGTCGTGGCCTCCCATAAA
AGGCATGGAGGTCCGCGCTACGACTTCCCATAGAGGAAAACTTCCGAGGACGATGACGACGGCGACGATGGGGCGCAACT
CGGCGGCG---GTACTCGTCGTGCTTGCCTGCCTCGTTTCCCTCGCATCGGCCCAGCAGGTCAAGACGACGGACACGCGC
TGGAGCTACCGTCTTCCGCTGCCCGACGGCGTCAGCGGCGCCGAGAGCCTCGCGTTCGCCGGCAAGGACGGGATCTACAC
CGGCGTCTCCGACGGGCGTGTCCTCAGGTGGGGCGGGAGCGCCGCCGGCTGGAGCACCTTCGCCTACAATGCCAACTACA
GGTCGGTCGGTGTAATTAAAAGCTCAAAATCGTGTTGTCAAGTGGG--------------TCGATCGCGATTTAAAATTT
AGCTTACGTGTGACATGTGGGACGTGTGTAGGAAAATTCCTTTGTGCTCGGATTCTGGGGTGCCGTCGGAAGAAAAGGAG
AGCATATGCGGGCGGCCGCTGGGTGTCCGGTTCAACAGGAAGACCGGCGAGCTCTACATCGCCGACGCCTACTTGGGGCT
CATGAAGGTCGGCCCGGAAGGCGGCGAAGCCCAGGTGCTAGCGACGGAGGCGGACGGCGTCCCCTTCCACTTCCTCAACG
GCCTAGACGTCGATCAGGCCACCGGCGATGTCTACTTCACCGACAGCAGCACCAACTATCCCCGGAGGTACCG-------
-TGCACGCCCGATCACGCCTTAATTTTATTTTATTTTTGTAACATCAACCCCGGAGATGACGAATCA------A------
-------------------CGTGCAGGTTTAACACGGAGATCATCATGAACGCCGACGCGACCGGCCGCCTGCTCAAGTA
CGACGCGCGGACGAAGCTCGTCACGGTGCTCGAGGCGGACCTGCCGTACCCGAACGGCGTCACGCTCAGCCGCGACAGGA
CGCACCTGGTGGTGGCGCACACGGTGCCGTGCCAGGCGTTCCGGTACTGGCTCAAGGGGCCCAAGGCCGGGCAGTACGAG
CTCTTCGCCGACCTGCCGGGGTACCCGGACAACGTGCGGCGCGACGGGCAGGGCGGTTTCTGGGTGGCGCTCAACCAGGA
GAAGGCGCGGCTCAACGCGA---CGGCGGCTCCGGTGAAGCACTTGGTCGGCGTCCGTCTCGGCGCCGACGGCGTGGAGG
TCGAGGAGTTGACGGCC---------------------------------------------------------------
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----------------------------------GCCAGGGGCGTGACGCTCAGCGAGGTGGCGGAGCAGAGCGGCAACA
AGTTGTGGTTGGGTTCCGTCGAGCTTGATTATATAGGCCTCTTAGTTTGATCGATTATG-TGGCAGCGCCT---TTATGG
ATTA------GTACGGGT---TCGTTGGTGGTTGTCTCATTGAGTTAGACTAGCCACAATGGGTAGTAACATAAAATAGT
AACATTGCCCATATTATTATTTTATGTTACTACCTCTATAATGGGGAGTAACATATGTGTGGTAACATGCAACACTTTAT
TTATTAAACTATAGACTCATATTGCCTTGATATGTGTGATGTTACTCATACTAGTAGTAACTAGCTATGTTACCACATGT
CTCTCTTTCTTCATTTATTGCTTGCCACATCATCTATTTTATCTAGATATGTGTGATGTTATTACCTATGTTACTCCCAC
TGTAGGTAGTCTTACTAAATAGAGTTAAAGGTCATGGCTTCGTATGGCTTCAGGACTACATGCAACGTTTTTTTGCAGAT
GTAATTATGCGAGTATTAGTTATCCTTCTGTCAAATCCATTTGCTTTGCTTAAGATCTTTTTCTGTTTGCATGTTTTTCT
TTCTGAATTTCGACTATTCGTACGGAATACTATTTAATAATACCATTTATTAGGAAAACATGAAAGGGTGATTTAAAAAG
TCATCCAGAATTCTTTCTACATGAAAAAGGACAAC-AAAAAAGTTGTTCGATACTCATGTTGACTTTGAAGCAGCTACAT
GGTACTGGCATTTTGTAGGCGTGGTTCGGTTTTTCCCATTTGTCTCTATCTATTGCTGGGAAGGTATATGAAAGAAGGTA
ACGAAAAGTGGATCGAGGAATAAAAGCTCGAAGACAAAGAGAACTTCTCCGGGTTAGTGGAGAACCCATGCAGCATGGCT
TCTCTGACGAGCAGGAAGCCACAAAAAGCAATGTACTATTGTAACTGATTTTTTAGTAGGCGAAGTTGCCGAATTCTGAA
ATCACTACAGGCATTGTGCAGAAAATTGTCGGCCCTAAAAACGATGTGTCCCCATGATCATTTTACATCACGATATCTTT
CTCTTCTAGTTATGCATTTTCCAC
>chr3B_1
TTTGCAGAAACAAAAGGTCAAAGAAGGGTTTGGACACCCG-CCTGACGAACTGGGAAACAATATCAATGGATGATGACTT
CCCAGTTACTGTCCGAATAAAAATTCC--T--TTCGAACTTAAAGATTGCTCATGTGTTAAGCGCATACTCGCACTACAT
GACCGCTAAAATTTTCGCGGAGTGCTGAAAGCTACCATGGCACAT-GTATATGCAATATACGGACTGAACGAACTCCCTT
CACTAAATCCCCTTCACCTACCCCGTCCGAAGACCCAATCCCCAAAACCACGACACAATCAGCCATGGCAAGCAAGCCAT
CTCGGGAATCCAGGGACTAATCGAAGCCCAGAGGGGTCGGGTCCTACTCCCG-CCCCCATGCTCGAGCTCCACGAAATGG
GCTCCCAGGCCGGGGCTTCAGCTACAGCTAGCGATTCTGGCTCGGGTAAGTGGACCCGCTAAGACGGAGGAGGCGGAGAG
GTAGGGGGCGTAGGGCGGGAGACTGACCTCGTCGGCGGCGGCCGGCGGCGAGCGGCGGTGATGGGTCGCGGGGAGGGGAC
CCGCAACCCGATCCGGTGGGGGCTTAGCAGATCGGAGCCGGGGCGGACGAGGCGTGGGTTGCGAGCCGCGACCCATTTCG
CGTGTGCAGGGTGGTGGTTTTGTCGCCGTGGTGGGTTTCGGGTCCGCGCCTGCGCGATGGACGGCCCTGATGCGGCCGCG
ACAGCCAGCTTCTCGGTCGGGCGTGGCTGGCCCGGACCCCAGACTACTTGGGTTAGTGGTAGCCA-GGTTGGAGTGGGTG
TGGGTGGACCGAGGCGAACAATACCTGAACCGCGCGGGTTCGGGCCGAACTCGGCAGAGACCACAAACGAAACGGGCTCG
GTCGGACGTACGCGGGCAGTCCGTCACGTCACGGT--------------------------TTTTGCTTACAGTTCGTGT
GGGATTTTACGTAGAGTTGGTGTAGGATTACTGCCGTGTCT-------GATCTGATCCATT-GTCGCGGCCTCCCATAAA
AGGCATGGAGGTGCGCGCTACGACTTCCCATAGAGGAAAACTTCCGAGGACGATGACGACGGCGACGATGGGGCGCAACT
TGGCGGCG---GTACTCGTCGTGCTTGCCTGCCTCGTTTCCCTCGCATCGGCCCAGCAGGTCAAGACGACGGACACGCGC
TGGAGCTACCGTCTTCCGCTTCCCGACGGCGTCAGCGGCGCCGAGAGCCTCGCGTTCGCCGGCAAGGACGGGGTCTACAC
CGGCGTCTCCGACGGGCGTGTCCTCAGGTGGGGCGGGAGTGCCGCCGGCTGGAGCACCTTCGCCTACAATGCCAACTACA
GGTCGGTGTAAT---T-AAAAGCGCAGGATCGTGTTATCAAGTACTCCGTATGTACTAGATCGATCGCGATTTAAAATTT
AGCTTACGTGTGACATGTGGGACGTGTGTAGGAAAATTCCTTTGTGCTCGGATTCTGGGGTGCCGTCGGAAGAAAAGGAG
AGCATATGCGGGCGGCCGCTGGGTGTCCGGTTCAACAGGAAGACCGGCGAGCTCTACATCGCCGACGCCTACTTGGGGCT
CATGAAGGTCGGCCCGGAAGGCGGCGAAGCCCAGGTGCTAGCGACGGAGGCGGACGGTGTCCGCTTCCACTTCCTCAACG
GCCTGGACGTCGATCAGGCCACCGGCGATGTCTACTTCACCGACAGCAGCGCCAACTATCCCCGGAGGTACCG-------
-ATCACGCC----------TTAAAAATC------TTTTGTAACATGAGCCCCGGAGATGACGAACCA------ATGTG--
-------------------CGTGCAGGTTTAACACCGAGATCATCATGAACGCCGACGCGACCGGCCGCCTGCTCAAGTA
CGACGCGCGGACGAAGCTCGTCACGGTGCTCAAGGTGGATTTGCCGTACCCGAACGGCGTGGCGCTCAGCCGCGATAGGA
CGCACCTGGTGGTGGCGCACACGGTGCCGTGCCAGGCGTTCCGGTACTGGCTCAAGGGGCCCAAGGCCGGGCAGTACGAG
CTCTTCGCCGACCTGCCGGGCTACCCGGACAACGTGAGGCGCGACGGGCACGGCGGTTTCTGGGTGGCGCTCAACCAGGA
GAAGGCGCGGCTCAACGCGA---CGGAGGCTCCGGTGAAGCACTTGGTCGGCGTCCGTCTCGGCGCCGACGGCGTGGAGG
TCGAGGAGCTGACGGCC---------------------------------------------------------------
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----------------------------------GCCAGGGGCGTCACGCTCAGCGAGGTGGCGGAGCAGAACGGCAACA
AGCTGTGGCTGGGCTCCGTCGAGCTTGATTATATAGGGGTCTTAGTTTGATCGATTGTG-TGTTAGCACCT---T---GG
ATTT------GTACGGGT---TCGTTAGTTGTTGTCTCATTGAGTTAGTAG-----------------------------
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------------------ATAGAGTTCAAGGTCATGGCTTCATATGGTTTCAGAACTACCTGCAACGTTTTTCTACAGAT
GTAATTATGCGAGTATTAGTTATCCTTCTGTCAAATCCATTTGCTTTGCTTAAGATCTTTTT---TTTTCATGTTTTTCT
TTCTGAACTTCCACTATTCGTATGGAATACTATTTAATAATACAATTTATTAGGAAAACATGAAAGGGTGATTTAAAAAG
TCATCCAGAATTCTTTCTACACGAAAAAGGACAAC-AAAAAAGTTGTTCGATACTCACGCTGGCTTTGAAGTAGCTCCAT
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>chr3A_1
TTTGCAGAAACAAAAGGTCAAAGAAGGGTTTGGACACCCCCCCTGACGAACTGGGAAACAATATCAATGGATGATGACTT
CCCAGTTACTGTCCGAATAAAAATTCC--TCTTTCCAACTTAACGATTGCTCATGCGTTAAGCGCATACTCACACTACAT
GACGGCTAAAA-TTTCGCGAAGTGCTGAAAGCTACCATGG-----------------------ACCGAAGGACCTCCTTT
CACTAAATCCCCTTCACCTACCCCGTCCGAAGACCCAATCCCCAAAACCACGACGCAATCAGCCGTGGCAAGCAAGCGAT
CTCGGGACTCCAGGGACTAATCGAAGCCCGGAGGGGTCGGGTCCTACTCCCGCCCCCCATGCTCGAGCTCCAGGAAATGG
GTTC-------------TCAGCTACAGCTAGCGTTTCTGGCTCGGGTAAGCGGACCCGCTAAGACGGAGGAGGCGGAGGT
GTAGAGAGCGTAGGGCGGGAGACTGACCTCGTCGGCGGCGGCCGGCGGCGAGCGGCGGTGATGGGTCGCGGGGAGGGGAC
CCGCAACCCGATCCGGTGGGGGCTTAGCAGATCGGAGCCGGGGCCGACGAGGCGTGGGTTGCGAGCCGCGACCCATTTCG
CGAGTGCAGGGTGGTGGTTTTGTCGCCGTGGTGGGTTTCGGGTCCGCCCCTGCGCGATGGACGGCCCCGATGCGGCCGCG
ACAGCCAGCTCCTCGGTCGGGCGTGGCTGGCCCGGACCCCAGACTACTTGGGTTAGTGGTAGCCAAGGTTGGAGTGGGTG
TGGGTGGACCGAGGCGAACAATACCTGAACCGGTCGGGTTCGGGTCGAACTCAGCAGAGACCACAAACGAAACGGGCTCG
GTCGGACGTACGGGGGCAGCCCGTCACGTCACGTCACGGTTTTACTTACAGTTCGTCACGGTTTTACTTACAGTTCGTGT
GGGATTTTACGTGGAGTTGGTGTAGGATTACTACCGTGTCTCTGGTCTGATCTGATCCATGGGTCGTGGCCTCCCATAAA
AGGCATGGAGGTGAGCGCTACGACTTCCCATAGAGGAAAACTTTCGAGGACTAT---------GACGATGGGGCGCAACT
TGGCGGCG---GTGCTCGTCGTGCTTGCCTGCCTCGTTTCCCTCGCGTCGGCGCAGCAGGTCAAGACGACGGACACGCGG
TGGAGCTACCGTCTGCCGCTGCCCGACGGCGTCAGCGGCGCCGAGAGCCTCGCGTTCGCCGGCAAGGACGGGGTCTACAC
CGGCGTCTCCGACGGGCGCGTTCTCAGGTGGGGCGGGAGCGCCGCCGGCTGGACCACATTCGCTTACAATGCCAACTACA
GGTCAGTGTAAT---T-AAAAGCTCAAAATCGTGTTTTTTTTCTTAG-----------GATCGACCGCGATCTAAAATTT
AGGTTACGTGTGGCATGTGGGACGTGTGTAGGAAAATTCCTCTGTGCTCGGATTCTGGGGTGCCGTCGGAACAAAAGGAG
AGCATATGCGGGCGGCCGCTGGGTGTCCGGTTCAACAGGAAGACCGGCGAGCTCTACATCGCCGACGCCTACTTGGGGCT
CATGAAGGTCGGCCCGGAAGGCGGCGAAGCCCAGGTGCTAGCGACGGAGGCGAACGGCATCCCCTTCCACTTCCTCAACG
GCCTCGACGTTGATCAGGCGACCGGCGATGTCTACTTCACCGACAGCAGCGCCAACTACCCCCGGAGGTACCG-------
-CACACGCCAGATCACGCCTTAAAAATC------GTTTGTAGCATGAACCCCGGAGATGACGAACCAATGTTTATGTG--
-------------------CGTGCAGGTTCAACACGGAGATCATCATGAACGCCGACGCGACCGGCCGCCTGCTCAAGTA
CGACGCGCGCACGGAGCTCGTCACGGTGCTCAAGGCGGAGCTGCCGTACCCGAACGGCGTCGCGCTCAGCCGCGACAGGA
CGCACCTGGTGGTGGCGCACACGGTGCCGTGCCAGGCGTTCCGGTACTGGCTCAAGGGGCCCAAGGCCGGGCAGTACGAG
CTCTTCGCCGACCTGCCGGGGTACCCGGACAACGTGAGGCGCGACGGGCAGGGCGGTTTCTGGGTGGCGCTCAACCAGGA
GAAGGCGCGGCTCAACGCGA---CGGCGGCTCCGGTGAAGCACTTGGTCGGCGTCCGTCTCGGCGCCGACGGCGTGGAGG
TCGAGGAGCTGACGGCC---------------------------------------------------------------
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----------------------------------GCCAGGGGCGTGACGCTCAGCGAGGTGGCGGAGCAGAACGGCAACA
AGCTGTGGCTGGGCTCCGTCGAGCTTGATTATATAGGCCTCTTCGTTTGATCGATTATG-TGCCAGCGCCTTTAT---GG
ATTT------GTACGGGT---TCGTTAGTGGTTGTCTCATTGAGTTAGTAG-----------------------------
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------------------ACAGAGTTAAAGGTCATGGCTTCGTACGGTTTCAGGACTACATGCAACGTTTTTCTACAGAT
GTAATTATGCGAGTATTAGTTATCCTTCTGTCAAATCCATTTGATTTGCTTAAGAT------------------TTTTCT
TTCTGAACTTCGACTATTGTTACGTACTTAAT----ATAATACCATTAATTAGGAAAACATGAAAGGATGATTAAAAAAG
TCATCCATAATTCTTTGTACACGGAAAAGGACAACAAAAGATGTTGTTCGATACT-------------------------
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>chr5B_987
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----------------------------------------------------------------------CTCCCATAAA
AGGCACACAGCTGCGTGCAACGATATTCCGTACAAGGCAACTTCCGAC------GATGACGATGACGATGCGGCGCAACC
TCGCGGCGATACTAGTCGTCGTGCTTGCCTGCCTCCTCTCTCTATCCTCGGCCGAGCAGATCAAGACGACGAACACGCGG
TGGAGCTACCGCCTCCCGCTGCCCGACGGCGTCAGCGGCGCCGAGAGCCTCGCCTTCTCCGGCAAGGATGGGGTCTACAC
CGGCGTCTCCGATGGCCGCGTGCTCAAGTGGGGCGGCAGCGCCGCCGGCTGGAGCACCTTCGCGTACAATGCCAACTACA
GGTCGGTGTAAT---T-ACAAGCTAAACATCGTGTACGTACGACGTGATCAAA-------------------------TT
AGATTACGTGTGACATGTGCGGCGTGTGTAGGAAAATCCCTCTGTGCTCGGATTCTGGGGTGCCATCGGAACAAAAAGAG
AGCATCTGCGGGCGACCGCTGGGTGTCCGGTTCAATAGGAAAACAGGCGAGCTCTTCATCGCCGACGCCTACATGGGGCT
CATGAAGGTGGGGCCTGACGGTGGCGAGGCCCAGGTGCTGGCGACGGAGGCGGATGGTGTCCCCTTCCACTTCCTCAACG
GCCTAGACGTCGATCAGGCTACCGGCGATGTGTACTTCACCGACAGCAGCGCCAACTACCCCCGCAGGTACCCTACATAC
ATGCCCGCCCGATCACGCCTCAATTCGATTCACTTCATCGTGCTTATGCGC-------GACGAATCTGTG----TGTG--
-------------------CATGCAGGTTTAACACGGAGATCATCATGAACGCCGACGCGACCGGGCGCCTGCTCAAGTA
CGACGCGCGGACGAAGCAAGTCACGGTGCTGAAGGCCGAGCTGCCGTACCCGAACGGCGTCGCGCTCAGCCGCGACATGA
CGCACGTGGTGGTGGCGCACACGGTGCCGTGCCAGGCGTTCCGGTACTGGCTCAAGGGGCCCAAGGCCGGGCGGTACGAG
CTCTTGGCGGACCTGCCGGGGTACCCGGACAACGTGAGGCGCGACGGGAAGGGTGGCTTCTGGGTGGCGCTGAACCAGGA
GAGGGCGCGGATGAATGCGACTGCGGCGGCTCCGGCGAAGCACCTGGTTGGCGTCCGTCTAAGCGCCGACGGCGTGGAGG
TTGAGGAGCTGACGGCC---------------------------------------------------------------
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----------------------------------GCCAGGGGCGTGACGCTCAGCGAGGTGGCGGAG---AACGGCAACA
AGCTGTGGCTGGGTTCCGTCGAGCTTGATTACATCGGTGTCTTTGCCTGATCGAGTTATTTGTTGGCGCCT---T---GA
TTTA------GTACGGTATCATCGTTAGCGGTTGTCTCTTT---------------------------------------
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>chr5B_1053
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--------------------------------------------------------CGACGATGACGATGCGGCGCAACC
TCGCGGCGATAGTACTCGTCGTGCTTGCCTGCCTCGTCTCTCTAGCCTCAGCCGAGCAGATCAAGACAACGAACACGCGG
TGGAGCTACCGCCTCCCACTGCCCGACGGTGTCAGCGGCGCCGAGAGCCTCGCCTTCTCCGGCAAGGACGGGGTCTACAC
GGGCGTCTCCGATGGCCGCGTGCTCAAGTGGGGTGGCAGCGCCGCCGGCTGGAGCACCTTCGCGTACAATGCCAACTACA
GGTCGGTGTAAT---TTAAAAGCTAAACATCCCGT---------------------------GATAGTGATCAGCAAATT
AGC-------TGACATGTGCTGCATCTGCAGGAAAATCCCTTTGTGCTCAGACTCTGGGGTGCCATCGGAACAAAAAGAG
AGCATATGCGGCCGGCCACTGGGTGTCCGGTTCAACAGGAAAACCGGCGAGCTCTTCATCGCCGACGCCTACATGGGGCT
CATGAAGGTGGGGCCGGACGGCGGCGAAGCCCAGGTGCTGGCGACGGAGGCGGACGGCGTCCCCTTCCACTTCCTCAACG
GCCTCGACGTGGATCAGGCAACCGGCGACGTGTACTTCACCGACAGCAGCGCCAACTACCCCCGCAGGTACCCTACATAC
ATGCCCGCCCGATCACGCCTCAATTCGATTCACTTCATCGTGCTTATGCGC-------GACGAATCTGTG----TGTG--
-------------------CATGCAGGTTTAACACGGAGATCATCATGAACACCGACGCGACCGGGCGCCTGCTCAAGTA
CGACGCGCGGACGAAGCAAGTCACGGTGCTGAAGGCCGAGCTGCCATACCCGAACGGCGTCGCGCTCAGCCGCGACATGA
CGCACGTGGTGGTGGCGCACACGGTGCCGTGCCAGGCGTTCCGGTACTGGCTCAAGGGGCCCAAGGCCGGGCGGTACGAG
CTCTTGGCGGACCTGCCGGGGTACCCGGACAACGTGAGGCGCGACGGGAAGGGTGGCTTCTGGGTGGCGCTGAACCAGGA
GAGGGCGCGGCTGAACTCAACTGCGGCGGCTCCGGTGAAGCACTTGGTCGGCGTCCGTCTCAGCGCCGACGGCGTGGAGG
TCGAGGAGCTGACGGCC---------------------------------------------------------------
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----------------------------------GCCAGGGGCGTGACGCTCAGCGAGGTGGCGGAG---AACGGGGACA
AGCTGTGGCTGGGTTCCGTCGAGCTTGATTACATTGGCATCTTTGCCTGATCGAATTATTTG------------------
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>chr2B_1441
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-------------------------------------------------------------GCCGTCGGAGGAGACGGAG
AGCCTGTGCGGGCGGCCGCTGGGGCTCGCGTTTCACCGCAAGTCCGGCGACCTCTACATCGCCGACGCGTACAAGGGGCT
CATGAGGGTCGGCCCCGACGGCGGCGAGGCGGAGGTGCTGGCCACCAGTGCCGGTGGCGTCCGGTTCAACTTCGTCAACG
GCATTGACATTGATCAGGTTACTGGCGATGTTTACTTCACCGACAGCAGCGTGACATATCCACGAAGGTACGTA------
------------------CTTAATCCAGATCCCTTCTACATGCTCAAATTC-------GATCACAAGCTGGTAAAACTAC
AAAATTAATACTACTAATCCGTGCAGGTTTAATACGGAAATCATGATGAACGCGGACGCGACGGGGAGGCTGCTCAAGTA
CGACGCGCGGACGAAGCAGGTCACCGTGCTCAAGGACGGCTTGCCGTACGCCAACGGCGTCGCGGTGAGCCACGACAGGA
CGTACGTCGTCGTCGCGCACACGGTGCCGTGCCAGGCACACAGGTACTATCTCCAGGGACCAAAGGCTGGCCACTACGAG
CTGCTCGCCGACCTGCCGGGCTACCCGGACAACGTGCGGCGAGACGGGAAGGGCGGCTACTGGGTGGCGCTGAACCAGGA
GAAGGGGCGCCCGGGCGCGA---CCACAGCCCCCGTGAAGCACTTGGTCGGTGTCC---TCGACGGCGGCGGCGTGGAGG
TAGAGGAGCTGACGGCGGCCAA----------------------------------------------------------
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---------------------------------------GGGCGTGACGCTCAGCGAGGTGACCGAG---AGGAAAGGGC
AGCTGTGGCTCGGCTCCGTCGAGCTCGATTATATCGGCCT----------------------------------------
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>chr5D_1762
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---------------------TGCAGGTTTAACACGGAGATCATCATGAACGCCGACGCGACCGGGCGCCTGCTCAAGTA
CGACGCGCGGACGAAGCTCGTCACGGTGCTGAAGGCCGAGCTGCCGTACCCGAACGGCGTGGCGCTCAGCCGCGACAGGA
CGCACGTGGTGGTGGCGCACACGGTGCCGTGCGAGGCGTTCCGGTACTGGCTCAAGGGGCCCAAGGCCGGGCGGTACGAG
CTCCTGGCGGACCTGCCGGGGTACCCGGACAACGTGAGGCGCGACGGTCAGGGTGGCTTCTGGGTGGCGCTGAACCAGGA
GAAGGCGCGGCTGAACGCGACTGCGGCGGCTCCGGCGAAGCACTTGGTCGGCGTCCGTCTCAGCGCCGACGGCGTGGAGG
TCGAAGAGCTGACGGCCGCCAGGGGCGTCACGCTCAGCGAGGTGGCGGAGAACGGCAACAAGCTGTGGCTGGGTTCCGTC
GAGCTTGATTATATCGGCATCTTTGCCTGATCGAATTATTTGTTGGCGGCTTGATTTGATTTATTAGTAGGGTGTCTGTT
AGCGGTTGTCTGATCGAGTTTTTTCCTTTTTCTTTTGACATGAGACTGATTCAGTATTAGACTGTTTTTAAGAAGGAATT
AAGTCAGTACACTTATGAAATTTGTATGGTTTCACGACTTCCTGCAACGTTTTCTATAAATGAAATTATGCACGTATTTA
GCTTTTGTTTCTGTAAAAAAGATATGCTTGATTTGCTTATGTATGTTTTCTTCGTAATAAGGAGCTCTATTTGACAGCCT
TCCAGCAACCACAAATAAGTGGCTATGGTCTTCATGCCGGCCCTGTTCATCGACTCAGAAAGTCCATGTTCGGTGGTGCA
TTTCGAATCCAGTGGATCTTCAATGTACGCCTCGACGTCGTTGGTGTTTCGGTGGTTAGCGGTTTTATTGACATCTGCAA
GGATCTTCATAGACTAAGCACCTTTTTTTCCTTTACTCGGAGAGTCTTTTGCAAAATTTAAGCACATTTGTATTCTCTCG
TGCTTTCTTGTTGTATCCATGTGGATCAGTTAAAGCTCTATTTGACAGTTGCCTGATGAAAACTAAAATAATTGCTTGCC
GATTTTAATCTTCTCCTACCTTTTCCTTTCAGCCGCCCTCCAACCACCCCCTCTAATCACAACCTGGTCAACCTCTGACT
TCCCTCCACAGGTGATGCGGCGGCCAGCTGCCTTGTCCCCGACTCCGGTTGCTCTTTGCTCGGCGTTGCTGGACGCCGTG
GCCGGCCGCGACACTCATGTCACTTCCTTTGGCTGCACCTCACCATCTTCTCTTTCCAAAGAGCAAACATTTTTTCCATA
TGTTTTCCTTTTTGAACTTGATTTTTTATGTATTTAGTATCATCAGGAAAACATGAAAGAGTGATTAGAAATCGAAAATG
TCATCTCGTGAAAGTTCGCCAGGAGCTGACGGCTGCCAGGGGCGTGACGCTCAGCGAGGTGGCGGAG---AACGGCAACA
AGCTGTGGCTGGGTTCCGTCGAGCTTGATTACATCGGCATCTTTGCCTGATCGAATTATTTGTTGGCGGCT---T---GA
TTTATTATCCGTAGGGTG---TCATTAGCGGTTGTCTGATCGAGTT----------------------------------
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>SNPs
--------------S------------S-----------SS-----S---------------------------------
----SS-------S-------------SS---------------------------------------------------
--------------------------------------------SS----------S-----------------------
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-------S--------S-----------------------------------------S---------------------
---------------------------------S----------------------------------------------
-----------------------------------------------S--------------------------------
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--------------------------S----------------------S------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
S-----------------S---S------S----------S----------S----------------------------
------------S-------------------------------------------------------------------
S-------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
-------SSSSSSSS---------------------S------S-S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
-------------------------S----SSS------------S----------------------------------
--------------------------------------------------------------------------------
-------------------------------S-----------------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S-----S-----------------------------------------------------S------------SSS--
--------------------------S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS-----------------------------S------------------------S-S-----
--------------------------------------------------------------SSS---S-----------
-------S------------------------------------------------------------------------
---------------------S-----------------------------------S-S--S--------S----S---
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_1001
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GGAGGATTGCTACCGTGTCC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>reverse_4085
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CTGGCATTTTGTAGGCGTGG--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
