>input_sequence_56358
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------------------------------------------------------------------------ATGATGAA
CTTCCCTGTGACCAAGTGCTGGCCGCCGGTGCTTGTCGGCCCGTCGGAGCCCACGCCGGCCGGCCATCTGCCTCTCACCT
CCACTGACAAGGGCTGCCTCTACCTGCCAGTCACGTCGCTCCACGTTTTCCACCGCCCGATCCACGAGCCGGCCGAGACC
ATACGGCGTGCGCTGTCCCATGCGCTGGTCCACTACTACCCCCTCGCCGGTCGCCTCGACGTCAGCGGCCCGGACGTCGA
GCTCGCATGCACCGGTGATGGCGTTGAGTACGTCGCCGCGACGACGAGCTACACTCTGGAGGATGTCAGGTTCCTTGACT
CGCCGCTGGTGACCCCTCTGGATGCCTTTGCCCTCCGGTCCGGCGATCGCGTCCGCATGCCGGAC------TGCCCGCTG
GTGATGATGCAGGTCACCGAGTTCGCCTGCGGCGGATACGTCGTCGGGGTGACGTGGAACCATGCCGTCGCCGATGCCTT
TGGGATGGCCCAGTTCCTAGGAGCCGTCGGCGAGCTTGCGCGCGGGCTGTCCATGCCGTCCGTCGTTCCGGTCAGGCACG
ACGCGGCGCTCCCGGAGATCCCGCACCTGTTCGGCGCCGTCGGGCCGTGCCTGGGCTTCACGCACGCCGAGTACGCCTAC
ACGGACGCGACCATCCCTTGGAGCTTCATCAGCCGCGTCAAGGCAGAGTACGCCGGCGTCG---ACCAGCCGTGCTCGAC
GTTCGATGTCGTGGCCGCGGCGATATGGCGGTGCCGGACCCGCGCGATGAACGCCGACCCGGCCTCCCCCACGCTGCTGG
TTTTCACGGCCAACGTGCGGAAGCACATTGGCGCCAAGGATGGCTACTACGGCAACTGCATCGCGCTGCAGATGGCCGTG
TCGACGTGTGGCGCGGTGGCGAACGGCGGCACCGCTGAGACGGCGAAGCTGATCAAGCACGGCAAGGAGCGGATACCTTG
CATCCTTGGAGATTACAAGCCTGTGCTGTTCAGCGAGGAGGTCGTTGGCGCGCTCCGCGGGTACGCGCCGCTGTTCATGT
CGAGCTGGGGCGGCATCGGGCTGGACGGGGTCGACTTCGGCGGCGGGAGGCCGGCGAGGGTGATGGCTGACATGGAGGTG
ACGTGGACGCCATGCTGCATCCCGTGCCT---------------------------------------------------
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---------------------------------ACCGTGTTCGAGGAAGGACGGCGACGGCGTGAATGTGCTGGCGTTCT
GCGTCAGGGAGGAGCACGTCGACAGATTCCATGCCGAGCTGGCGACGCTCCACTGA------------------------
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-------------------------------------------------------------------------
>chr3B_1_TraesCS3B01G041000
CCAACCATTTTCACCAAACTATGCATTGTATGACTTCAAACAAATTATATAGGGCGTGTGCTATGCGTGGGCCAACTAAT
CTTTGTAAAAGATCGGTCGGGTCATGAGCCATTCGAATCGGTGCGATCGAGCGGTCAGCGTCACGTCGTGAGGCCCTTGC
AACACCAACAACATTGCCAAGGCCTTTGCAACAGTAATGACATTGCGAAGGCCCTTTGCAACACAGACGACATTGCACAA
GCGGAAAGTAGCAATGATGACTGTTGCTTGGATCAGACCGCCACCATGGTAACACAGATGACGTTGTAAAGGCCATTTGC
AACACGGACGACATTTTGAAGCCTTTGCAACACGAATGATATTGCAGAAGCACAGAGCAACAATGATGGCCGCTGGTCGG
ATTAGGTTGCTACCATGGTGACACAGACGTCGTTATGAAGGTTCTTTTCAACACGGACGACATTGTGAAGCCTTC-GCAA
AACAAACGACATCGTGAAGCGTTTGCAACACGCATGGCCCGGTGTTGCAGCAGCAAAGTTCTGTCGCCCTAGGCCTCGCC
ATATGTGTCGCGAGGAGAATGGACTGTTCAGAGGAGATGGATGAGTGAGAAATGGCGGTCAATGCGTC------------
-GCGTGATGAGCGGGTCGAGGGAAAGCTTTTCCCTAGACTAGA-----------------TAGTCTTCTGACACCTTGTA
TTGACGTCCGGTATTTGTGCGTTGTCAACGGAAACATGTTCACAATGGTTTTTCTAAGACTTATGGCGAATTTTGTATAG
GAAAAATGGCGGCTAAGCCACTTGCATTCTCAACATCCTTCTCAGTTAACTAATTTGAATTGCTGTCGGTGCCCTTATTA
GTATACGTACATCGAAAATACCTTGACCAATAATCCGAAGCAAGAGGTTGCCATAGTTAGTTAAGTAGGTGTCGATCGGC
CTCTAATCTGCATCGAGAGAGCGACCAGTTGAGCGAAAGAGACAAGGAAAC-CTAGTCCACGAAAGAGCAGGATGATGAA
CTTCCCTGTGACCAAGTGCTGGCCGCCGGTGCTTGTCGGCCCGTCGGAGCCCACGCCGGCCGGCCATCTGCCTCTCACCT
CCACTGACAAGGGCTGCCTCTACCTGCCAGTCACGTCGCTCCACGTTTTCCACCGCCCGATCCACGAGCCGGCCGAGACC
ATACGGCGTGCGCTGTCCCATGCGCTGGTCCACTACTACCCCCTCGCCGGTCGCCTCGACGTCAGCGGCCCGGACGTCGA
GCTCGCATGCACCGGTGATGGCGTTGAGTACGTCGCCGCGACGACGAGCTACACTCTGGAGGATGTCAGGTTCCTTGACT
CGCCGCTGGTGACCCCTCTGGATGCCTTTGCCCTCCGGTCCGGCGATCGCGTCCGCATGCCGGAC------TGCCCGCTG
GTGATGATGCAGGTCACCGAGTTCGCCTGCGGCGGATACGTCGTCGGGGTGACGTGGAACCATGCCGTCGCCGATGCCTT
TGGGATGGCCCAGTTCCTAGGAGCCGTCGGCGAGCTTGCGCGCGGGCTGTCCATGCCGTCCGTCGTTCCGGTCAGGCACG
ACGCGGCGCTCCCGGAGATCCCGCACCTGTTCGGCGCCGTCGGGCCGTGCCTGGGCTTCACGCACGCCGAGTACGCCTAC
ACGGACGCGACCATCCCTTGGAGCTTCATCAGCCGCGTCAAGGCAGAGTACGCCGGCGTCG---ACCAGCCGTGCTCGAC
GTTCGATGTCGTGGCCGCGGCGATATGGCGGTGCCGGACCCGCGCGATGAACGCCGACCCGGCCTCCCCCACGCTGCTGG
TTTTCACGGCCAACGTGCGGAAGCACATTGGCGCCAAGGATGGCTACTACGGCAACTGCATCGCGCTGCAGATGGCCGTG
TCGACGTGTGGCGCGGTGGCGAACGGCGGCACCGCTGAGACGGCGAAGCTGATCAAGCACGGCAAGGAGCGGATACCTTG
CATCCTTGGAGATTACAAGCCTGTGCTGTTCAGCGAGGAGGTCGTTGGCGCGCTCCGCGGGTACGCGCCGCTGTTCATGT
CGAGCTGGGGCGGCATCGGGCTGGACGGGGTCGACTTCGGCGGCGGGAGGCCGGCGAGGGTGATGGCTGACATGGAGGTG
ACGTGGACGCCATGCTGCATCCCGTGCCT---------------------------------------------------
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---------------------------------ACCGTGTTCGAGGAAGGACGGCGACGGCGTGAATGTGCTGGCGTTCT
GCGTCAGGGAGGAGCACGTCGACAGATTCCATGCCGAGCTGGCGACGCTCCACTGAACCAACCAAGCAACCTGTTCGAGT
GCCCTGCCATTCATTCTCCTCGATTCGTTGTTTCAAGTTTGATCGCTTTTGTGATTCATCAGATCTTGCCAACGGCAGAT
GTTTAAGTTTCAACGCTGCAACACGCGGGCAGATTCATGTATTTGTTATTTATTAGAGCATCTCCAATAGGCGCGCAATA
CGCGACGCGCAAAAAAAACATTTACAGCGCCGTTTACGGGAGTTTTTGGGCGCTGCGAAGCGTTGGCTCCAGCGGCCACT
GCAAAATAGAGCGCGCGCGAGCCGCTCCAACAGACGA----------------------------TGTACTACGACTCGA
TACACATATAGGCATAGATAGATAAAAAC--A----------AATAGATAGATAGATTAAAC-----GAT-AAATAGTAC
AAAGATAGAT---------------TAC---ACGATAG-------------------ATAAAAAACGATACATAGATAGT
GCGTAGATAGT---TCAT-AGCCTCCTCCTACGATAGATA--AAACGGTAGATAAAAA----AACTAC---TTGTC---G
TCCTC------CTCCGA---CTCTACCTCGGCGATGTCCTCCTCCGACGTCACAATGAAGACATCAAGGTATCGATCGTC
TTCGGAGTCCCCGGATGACGCTGCTCCTAGCTCGATGTTGAACCGAGCGTCCGCCTCCCGCATACACCGGTCCTCGCGAT
AGGCGGCTCGCTCCGCCCTCCTCTCCTCCCTCTCCGCCCTC---------CTTTCCGCGAAGAACTGCTGCTCGTTGATG
ACGTCCTGCGGGAAGCGTTGGCGCCACT-----------------TCCATCTCGACGAGGCTGGGACGGCACTCCCGCCT
CCGGTTCTCGTGACGATCCTCGTCGGTGAGAAACCGCAGGGGAGGCGCCAGCTCTTGCGCCATCTCCCGCGTCGGTACCT
CCGGGAAGTTCATGTCCCGGCAGGTCCACCGGAGGCGCCACGCCGCCGCGTCGTACGTGCGGGCGGCCTCGTCGGCTGTC
TCAAAGGTGCCGAAGCCGAGGCGCACGTC-GCCGGACCGAATCTCGATGGAGAAGGCGCCGGACGGGCACG--
>chr3A_6
-----CATTTTCGCCAAGCTATGCATTGTTTGACTTCACGCAAATTATATAGAGCGTCTGCTATGTGTGGGCTAGCTGAT
ATTTGTAAAAGATCAGTCGGGTCATGAGCCATTTGAATTGGTGCGATCGAGCAGCCAGCATCACGTCGTGAGGCCCTTGC
AATACCAACAACATTGCAAAGGCCTATGAAACACAAACGTTATTGCGGAGGCCCTTTACAACACATACGACATTGCAGAA
AGA-AAAGTAGCAACGATGGTTGTTGCATGGATCAGGCTGCCATCATGGTAACACAGATGACGTTGTGAAGGCCCTTTGC
AACACGAAGGACATTTTGAAGCCTTTGCAACACGAATGATATTGCAGAAGCGCGGAGCAACAATGATGATTGCTGCTCGG
ATTAGGTTGCCACCATGGCAACATGAACGCTGTTTTGAAGGCCCTTTTCAACACGGACAACGTTGCTAAGCCTTTTGCAA
CACAAACGACATTGTGAAGCATATGCAACACGTGTGGCTCGGTGTTGCAGCAGCAAAGCTCTGTGGCCGTAGGCCTCGCC
ATATGTGTCGCGAGGAGAATGGACTGT-CAGAGGAGATGGATGAGAGAGAGATGGTGGTCAAGCCACACATGGCGGTCAA
TGCGTGATGAGCGGGTCGAGGGAAAGCTTTTCCCCAGATTAGATAGGCCTTCGTCTGGATTAGTCTTCTGACACCTTGTA
TTGAGGTCCGGTATTTGTGCGTTGTCAACGGAACCATGTTCACGCTAGTTTTTCTAAGACTTGTGGCGAATTTTGTATAG
GAAAAATGGCGGCTAAGCCACTTGG---------------------------------ATTGGTGTCGGTGCCCTTAGTA
TACTTCGGGTTGGTTAAGTACTACTTGT----ATACTAAGCCAAAGTTAGCCATAGTTAAGTACGTGTCGGCCTGTAATC
TGCAATTCTGCACCGAGCGACCGACCAGTTGAGCCAAAGAGACAAACCTACACTAGTCCACGATCGAGCAG---GATGAA
GTTCGCTGTGACCCAGTGCTCGCTGCCGGTGCTGGTCGGCCCGTCGGAGCCCACGCCGGCCGGCCATCTGCCTCTCACTT
CCACTGACAAGGGCTGCCTCTACCTGCCAGTCACGTCGCTCCACGTCTTCGACCGCCCGATCCACGAGCCGGCTGAGATC
ATACGGCGCGCGCTGTCCCATGCACTGGTCCACTACTACCCCCTCGCCGGTCGCCTCGACGCCAGCGGCCCGGACGTCCA
GCTCGCATGCACCGGTGATGGCGTCGAGTACGTCGCCGCGACGGCGAGCTGCACTCTGGAGGACGTCAGGTTCCTTGACT
CGCCGCCGGTGGCCCCTCTGGACGCTTTTGTCGTCCGGTGTAGCGATCGCGTCCGCATGTCAGAT------TGCCCGCTG
CTGATGATGCAGGTCACGGAGTTCGCCTGCGGCGGATACGTCGTCGGGGCGACGTGGAACCATGCCGTCGCCGACGCCTT
CGGGATGGCCCAGTTCCTAGGGGCCGTCGGCGAGCTCGCGCGCGGGCTGCCCACGCCGTCGGTCGTTCCGGTGAGGCACG
ACGCGGCGCTCCCGGAGATCCCGCACCTGTTGGGCGCCGTGGGGCCGTACCTGGACTTCACGCACGCCGAGTACGCCCGC
ACGGACGTGACCATCCCTTGGAGCTTCATCAACCGCGTCAAGGCAGAGCACGGCGGCGCGGACCACCAGCCGTGCTCGAC
GTTCGACGTCGTGGCGGCCGCGGTATGGCGGTGCCGGACCCGCGCGATGAACGCCGACCCGGCCTCCCCCGCGCTGCTGG
TCTTCACGGCCAACGTGCGGAGGCACATCGGCGCCAAGGACGGCTACTACGGCAACTGCATCGCGCTGCAGATGGCCGTG
TCGACGTGTGGCGCGGTGGCGGACGGCGGCACCGCCGAGACGGCGAGGCTGATCAGGCGCGGCAAGGAGCGGATACCGTG
CATCCTTGGAGATTACGAGCCCGTGCTGTTCGGCGAGGAGGTCGTCGGCGCGCTCCGCGGGCACGCGCCGCTGTTCGTGT
CGAGCTGGGGCGGCATCGGGCTGGACGGGGTGGACTTCGGCGGCGGGAGGCCGGCGAGGGTGATGGCCGACATGGAGGTG
ACGTGGGCGCCATGCTGCATCCCGTGCCT---------------------------------------------------
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---------------------------------GCCGTGTTCGAGGAAGGACGGCGAGGGCGTGAATGTGCTGGCGTTCT
GCGTCAGGGAGGAGCACGCCGACGGATTCCATGCCGAGCTGGCGACGCTCCACTGAACCATGCAGGCAGCCTGTTCGAGT
GT-----CATTCCTTCTCATCGACTCGTTGTTTTTGTGAT------------------TCAGATCTTGCCAACGGCAGAT
GATTGAGTTTCATCGCTGCA----GCGGGCAGATTCATGTTTTTTAATTA------------------------------
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>chr3B_1003
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--------------------------------------------------------------------------GATGAA
ATTCCTTGTGACCCAGTCCTCGCCGCCGGTTCTCGTAGGCCCGTCGGAGCCCACGCAGGCCGGCAACCTGCCTCTCACTT
CTTCCGACAAGGCCTGCCTCCAGGTGTCGGTCACGTCGCTCCACATTTTCGACCGCCCGATCCACGAGCCGGCTGAGAGC
ATACGGCGTGCTCTGTCCCAAGCACTTGTCCACTACTACCCCCTCGCCGGTCGCCTGGCCGTCAGCGGGCAGGACGTCCA
GCTCGCGTGCACCGGTGACGGCGTTGCGTTCGTCGCTGCCACGGCGAGCTGCACTCTGGAGGATGTCAGGTTCTTCGACG
CGCCACTGGTGATCCCTTTGGATGCCCTTGCCGTCCGGTCCGGCGAGCACGCCCGCATGTCGGATTCGGAATGCCCGCTG
CTGATGATGCAGGTCACCGAGTTCGCCTGCGGCGGATACGTCGTCGGGGTGACGTGGAACCATGCCGTCGCTGACGACTT
TGGGTTGGCCCAGTTCCTAGGAGCCGTCGGCGAGCTTGCACGCGGCATGTCCCCGCCGTCCGTCGTCCCAATCAGGCACG
ACGCATCGCTCCCGGAGATCCCGCAGCTGATGGCTGCCCTCGGGCCGTCCCTGGGCTTCA--------------------
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>chr3B_1620
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---------------------------------------------------------TCAAGCACGTCGAGTTCGCCTAC
ACCGACATGACCATCCCTTGGAGCTTCATCAACCGCATCAAGGCCGAGTTCCGGGGCGTGG---ACCAGCCGTGCTCGAC
GTTCGAGGTTGTTGCCGCCGCGATATGGCAGTGCCGGGCTCGCGCGATCAACGCCGACCCAGGCTCCCCTGCGCCGCTGA
TTTTTACGGCCAACATGCGGAAGCACGTTGGCGCCAAGGATGGCTACTACGGCAACTGCATCGCGCCGCAGATGGTGGTG
ACGACGTGTGGCGCGGTGGCGAACGGCGACACCGCTGAGGTGGTGAAGCTGATCAAGCACGGCAAGGAGCGGATACCGGA
CACCCTCGGGAATTACGAGCACGTGCTG---AGCAAGGAGCTCGCTGGCGCGCTGCTCGGTTACACGGCGGTATTCACGT
CGAGCTGGGGCGGCATCGGGCTGGAGGGCGTCGACTTCGGCGGCGGTACGCCGGCGAGGGTGATGGCCCACTTGGAGGTG
ACGTGGACGCCAGGCTGCGTGCTGTGTCTACCGTGTTCGAGGATAGGGGTGGGCATAAAAACCGACCAACCAAATACCGA
ACCGAAACCGCAACCGAATAAACCAAATTTTCGGTTTTTATTATTGGTACAGCTAAATTCGGTTTTTATTTTCAATAACC
GAACTCACATCGGTCGGTTCGGTATTAAACTGTTAACCGAAAAAGAAACCGAAGCGTGCATGACGCAGCCTTCCATGCAG
CTCCCTGTACAGCGTCCATCAGGCATCTCATCAACCGATCGCGGCCGCGCGCGCATGTAGCCGTATAATATACGAGCAGC
CCCCACTGGCTACCTTTTTATCTTCTTGAGGCAACCCCACGTGCTACATTTTTTTAACCGAGCCCCACATAAAATAAAAC
ATGGGCCGGCCACCTATTTGCATGGCCCAAACACAACTGACGGTACTTTGTGGGCTAGCGAAGTGCCTAGTGGCAGGACA
CTGTCAATTCTTTAGTCCCACCTCGCCTGGCTACACTAAAGGAGACAAGGTGCTTGGTTATATAAGAGGGCGGGGTGAAA
CTGGAGCACTCGCAGCTGCATGGTAAGCAACAACGCAGCTTCGGTGTAAACCGAAAACTGAACCGAACAAGTTGGTTAAC
CAATTATCGGTTAGCTAGTTTGGGTTGCCTATTTCGGTTTTGATTCTTGCTAACCGAATTTTAAAAATAACCGAATGGTA
TAAACCGAATTTTCAGTTTCTACCGAACGCCCAGCCCTATTCGAGGAAGGACAGCGACGGCGTGAACGTGCGAGCGTTCT
GCGTCAGGGAGGAGCACGTCGACGGTTTCCATGCCGCATTGGCGACGCTCCACTCAACCAAGCCCTGGTTCGATTGCCA-
----------TTCTTCTGCTCGTTTCGTTATTTTAAGT------------------------------------------
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>chr7D_2403
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-----------------------------------------------ATTCATGAGAGCATCTTCAACAGGCGCGCAACG
CGCGGCACAC-AAAAAAATGTTTACAGCGCCGTTTTCAGGAGTTTTTGCGCGCCGTGGAGCGCTGGCTCCAGCGGCCGCT
GCAAAATAGAGCGCGCGCGAGCCGCTCCAACAGGCGTGTTA-----------TATTTGCTTTTTTTGTACTACGACTCGG
TACATATATAGGCATAGATAGATAAAAAACAAATAGATA---GATAGATTAA--------AC-----GAT-AAATAGTAC
ATAGATAGAT---------------TAA---ATGATAG-------------------ATAAAAAA-GATACATAGATAAT
GCGTACATAGTTCATCAT-AGCCTCCTCCTATGATAGATA--AAA------------A----AACTGC---TCGTC---G
TCCTCCTCCGACTCAGA---CTCCACCTCGGTGATGTCCTCCTCTGACGTCACAATGAAGGCGTCAAGGTACCGATCGTC
TTCGGAATCCCAGGACGACGCTGCTCCTAGCCCGATGTTGAACTGAGCGGCCGCCTTCCGCGTACGCCTGTCCTCGCGAT
AGGCGGCTCACTTCGCCCTCCTCTCCTCCCTCTCCGCCCTC---------CTTTTCGCGAAGAACTGTTGCTCGTTGATG
ACGTCCCGCGGGAAGCGTTGGCGCCACAACGCCATGGCTTCCTCGTCCATCTCGGCGAGGCTGAGACGGCGGTCCCGCCT
CCGCTTCTCGCGACGATCCTCGTCGGTGAGAAGCCGCGGGGGAGGCGTCAGCTCCTGCGCCATCTCCCGCGTCGGCACCT
CCGGGAAGTTCATGTCCCGGCGGGACCGCCGGAGGCGCCACGCCGCCGCGTCGTACGCTGTCGG----------------
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>chr6B_2408
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----------------------------------------------------TTAGAGCATCTTCAACAGGCGCGGAAAG
TGCGGCGCGCAAAAAAAGCATTTGCAGCGTCGTTTACGCGAGTTTTTGTGCGTCGAGGAGTGCTGGCTCCAGCAGCCGCT
ACAAAATAAAGCACGC--GAGCCGCTCCCGCAGAAGCGTTATATTTG-TCCTC---------TTTTCTACTACGACTCGA
TACACATATAGGCATAGATAGAAACTTAGATATTAAATAAATGATAGATTAA--------AATGATAGAT-AGATAGTAC
ATAGGTAGAT---------------TAA---ACCGTAG-------------------ATGAAAAATGATACATAGATAGT
GCGTAGATAGT---TCAT-AGCCTCCTCCTGCGATAGATA--AAATGATAGATAAAAA----A-CTAC---TCGTCATTC
TCCTTCTTCGACTCGGA---CTCCGCCTCGGTGATGTCCTCCTCCGACGTCACAATGAAGACGTCAAGGTACCGGTCGTC
TTCGGAGCCCCGGGACGACGCTGCTCCTAACTCGATGTTGAACTTAGCGGCTGCCTTCCATGTCCGCCGGTCCTCGCGAT
AGGCGGCTCGCTTCACCCTCCTCTTCTCCCTCTCCACCCTC---------CTTTGCGTGAAAAACAATTGCTCGTTGATG
ACGTCCTACGGGAAGCGTTTGCGTCATAGCGCCATGGCTTCCTCGTCCATCTCGGCGAGGCTGAGACGGCGCTCCCGCCT
CCGGTTCTCGCGACGATCCTCGTCGGTGAGAAGCCGCAGGGGAGGCGCCAGCTCCTGCGCCATCTCCCGCGTCGGCACCT
CCGGGAAGTTCATGTCCCTTCGGGGATGCCGGAGGCGCCACGCCGCCGCGTCGTACGCGCGGGCGGCCTCGTGGGCGGTC
TCGAAGGGGTCGAGGCCGAGGTGCACGTC-GCCGGACCGTATCTCGGCGGAGAAGGCGTCAGACGGGCACG--
>chr1A_2410
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------------------------------------------------------AGAGCATCTCCAACAGGCGCGCAACG
CACGGCGTGC-AAAAAAGAGTTTACAGCACCTTTTACGCGAGTTTTTGCGCGCTGCGGAGCGCTGGCTCCAGCGGCCGCT
GCAAAATAGAGCGCGCGCGAGCCACTCCAGCAAACGCGCTACATTCG-TTCTC---------TTTTCTACTACGACTCGA
TACACATATAGGCATAGAAAGATAAAAAC--AATAGATA---GATAGATTAA--------AATGATAGAT-AAATAGTAC
ATAGATAGAT---------------TAATAAACGATAG-------------------ATAAAAAGTGATACATAGATAGT
GCGTAGATAGT---TCAT-AGCCTCCTCCTACGATAGATA--AAATGATATATAAAAGAACTA-CTCT---TCGTC---C
TCCTCCTCCGACTCAGA---CTCCACCTCGGTCATGTCCTCCTCCGACGTCACAATGAAGGCGTCAAGGTACCGCTTGTC
TTCGGAGTCCCAGGACGACGCTCCTCCTAGCTCGATGTTGAACTCAGCGGCCGCCTTCCACGTACGCCGGTCCTCGCGAT
AGGCGGCTCGCTCCACCCTCCTTTCCTCC---------CTCTCCATCCTCCTCTGCGCAAAGAACTGTTGCTCGTTGATG
ATGTCCCGCAGGAAGCGTTGGCGCCACAGTGCCATGGCTTCCTGGTCCATCTCGGCGAGGCTAAGACGACGCTCCTGCCT
CCGGTTCTCGTGACGATCCTCGTCGGTGAGAAGCCGCGGGGGAGGCGCCAACTCCTGTGCCATCTCCCGCGTCGGCACCT
CCAGGAAGTTCATGTCCCGGCAGGGCCGCCGAAGGCGCCACGCCGCCGCGTTGTACGCAAGGGCGGCCTCGTGGGCGGTC
TCGAAGGTGCCGAGGCCGAGACGCACGTC-GCCGGACCGAATCTCGACGGAGAAGGCGCCAGACAGGCGCG--
>chr7D_2410
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------------------------------------------------------AGAGCATCTCCAACATGCGTGCAACG
CGCCACGCGT-AAAAAAACATTTACATTGTCATTTACAGGAGTTTTTGCGTGCCGTAAAGTGCTGGCTCCAGCGGCCGCC
GCAAAATAAAGCGCGCACGAGCCGTTTCAGCAGACGCGCTATATTTGCT---T---------TTTTTTACTACGACTCGA
TACACATATAGGTATAGATAGATAAAAAC--A----------AATAGATAGATAAATTAAAC-----GATAAAATAGTAC
ATAGATAAAT---------------TCA---ACGATAA-------------------AAAAACG-------ATATATAGT
GCGTAGATAGT---TCAT-AGCTTCCTTCTACGATACATA--AAACGATAGATAAAAA----AACTAC---TCGTC---G
TCCTTGTTCGACTCGGA---CTCCACCTCGGTGATGTCCTCATCCGATGTCACAATGAAGGCGTCAGGGTACCGATCATC
TTCGAAGTCCCAGGACAACGCTGCTCCTAACTCGATGTTGAACTCA-CGGCCGCCTTCCGCGTACGCCGGTCCTCGCGAT
AGGCAGCTCGCTCCGCCCTCCTCTCCTCC---------CTC---------CTTTCCGTGAAGAACTGCTGCTCGTTGGTG
ACGTCCTGCGGGAAGCGTTGGCGCCACAACGCCATGGCTTCCTCGTCCATCTCGGCGAGGCTGAGACGGCGCTCCTGCCT
CCAGTTCTCGCGATGATCCTCGCCGGCGAGAAGCCGCGGGGGAGGCGCCAGCTCCTGCGCCATCTCCCGCGTTGGCACCT
CCGGGAAGTTCATGTCCAGGCAGGCCCGCCGGAGGCGCCACGCCGCCCTGTCGTACGCGCGGGCGGCCTCGTGGGCGGTC
TCGAAGGTGCCGAGGCCGAGGCGCACGTC-GCCGGACCGAATCTCGGCCGAGAGGGCGCCGGACAGGCACG--
>chr7B_2436
CGCGG---------------------------------------------------------------------------
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-------CGCGTAAAAAAAAATTACATCGTTATTTACGGGAGTTTTTATGCACCGTGAAGCGCTGGTTCCAACGACCGCT
GCAAAATAGAGCGCGCGCGAGCCGCTCCAGCAAACCCGCTATATTTG-T---T---------TTTTTTACTACGACTCGA
TACAGATATAGGCATGGATAGATAAAAAT--A----------AATAGATAAACATATTA--------GATAAAATAGTAC
ATAGATAGAT---------------TAA---ATGATAG-------------------AAAAAA---GATACATAGATAGT
GCGTAGATAGT---TCAT-AGCCTCCTCCTATAATACATA--AAATGATAGATAAAAA----AATTAC---TCGTC---G
TCCTCCTTCGGCTCGGA---CTCCACCTCGATGATGTCCTCCTCCGACGTCACAATGAAGACGTCAAGGTACCAATCATC
TTCGGAGTCCCAGGACGACGCTGCTCCTAGCTCGATGTTGAACTGAGCGGCCGCCTTCCGCGTACGCCGGTCCTCGCGAT
AGGCGGCTCACTCCGCCCTCCTCTCCTCC---------CTC---------CTTTCCGCGAAGAACTGCTGCTCGTCGATG
ACGTCCTGCGGGAAGCGTTGGCGGCACAGCGACATGGCATCCTCGTCCATCTCGGCGAGGCTGAGAGGGCGCTCCCGCCC
CCGGTTCTCGCGACAATCCTTGTCGGTGAGAAGCCGCGGGGGAGGCGCCAGCTCCTGCGCCATCTCCCGCGTCGGCACCT
CCGGGAAGTTCATGTCCAGGTGGGCCCGCCGGAGGCGCCACGCCGCCGCGTCGTACGCGCGGACGGCCTCATGGGCGGTC
TCGAGGGTGCTGAGGTCGAGGCGCACGCC-GCCGGACCGAATCTCGGCGGAGAAGGCGCCGGGCGGGCGCG--
>chr7A_2441
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-----CGCGCAAAAAAAGCGTTTACATCGTTATTTACGGGAGTTTTTGCGTGATGTGGGGCGCTGGCTCCAGCGGCCGCT
GCAAAATAGAGCGCGCGTGACCCGTTCCAGCAGACGCATTA-----------T---------TTTTTTACTACGACTCAA
TACACATATAGACATAGATAGATAAAAAC--A----------AATAGATAGATAGAGTAAACTG-----TAAAATAGTAC
ATAGATAGAT---------------TAA---ATGATAG-------------------AAAAAAAATGATATATAGATAGT
GTGTAGATAGT---TCAT-AGCCTCCTCCTACGATACATA--AAATGATAGATAAAAA----A-CTAC---TCGTC---G
TCCTCCTTTGACTCGGA---CTCCACCTCGGTGATGTCCTCCTCCGACGTCACAATGAAGGCGTCAACGTACCGATCATC
TTTGGAGTCTCAGGACGACGCTGCTCCTAGCTCGATGTTGAACTGAGCGGCCGCCTTCCGCGTACGTCGGTCCTCGCGAT
AGGCGGCTCGCTCCGCCCTCCTCTCCTCC---------CTC---------ATTTCCGCGAAGAACTGCTGCTCGTTGATG
ACGTCCTGCAGGAAGCGTTGGCGCGACAGCGCCATGGCTTTCTCGTCCATCTCGGCGAGTCTGAGACGGCGCTCCTGCCT
CCGGTTCTCGCGACGATCCTCGTCGGTGAGAAGTCGTGGTGGAGGCGCCCGCTCCTGTGCCATCTCCTGCGTCGGCACCT
CCGGGATGTTCACGTCCAC---------------GCGCCACGCCGCCGCGTCGTACACGCGGGCGGCCTCGTGGGCGGTC
TCAAAGGTGTCGAGGCCAAGGCGCACGTC-GCAGGACCGAATCTCGGCGAAGAAGGAGCCGGACGAGC-----
>chr6D_2443
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-------CGCAAAAAAAGCGTTTACAGCGCCGTTTACGCGAGTTTTTGCGTGCGGCGGAGCGCTAGCTCCAGCGGCCGCT
GCAAAATAGAGTGCGCGTAAGCCGCTCCAGCAGACGCGCTATATTTG-TTATT---------TTTTATACTACGACTCAG
TACACATATAGGCATAGAGAGATT--------------------------------------------------------
---GATAGATAGTACATAGATAAATTAA--AACGATAGAT------AAAC----------------GATACATAGATAGT
GTATAGATAG-------T-AGCCTCCTCCTACGATAGATA--AAACGATAGATAGAAA----A-CTAC---TCGTC---G
TCCTCCTCCGACTCGGA---CTCCACCTCGGTGATGTCGTCCTCCGACGTCATAATGAAGGCGTCAAGGAACCGATCATC
CTCGGAGTCCCAGGACGACGCTGCTCCTAGCTCGATGTTGAACTGAGCGGCCGCCTTCCGCGTACGCCGGTCCTCGCGAT
AGGCGGCTCGCTCCGCCCTCCTCTCCTCC---------CTCTCTGCCCTCTTTTCCGCGAAGAACTGCTGCTCGTTGATG
ACGTCCTGCGGGAAGCGTTGGCGCCACAACGCCATGGCTTCCTCGTCCATCTCGTCGAGGCTGAGACGACGCTCCCGCCT
CCGGTTCTCGCGACGACCCTTGTCGGTGAGAAGCCGCGGGGGAGGCGCCAGCTCCTGTGCCATCTCCCGCGTCGACACCT
CCGGGGAGTTCATATCCCGGCGAGACCGCGAGAGGCGCCACGCCGCCGCGTCGTACGTGCGGGCGGCCTCGTGGGCGTTC
TCGAAGGTGCCGAGGTCGAGGCGCACGTC-GCCGGACCGAATCTCAACGGAGAAGGTGCCGGACGG-------
>chr3A_2467
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-------------------------------GTTTATGTGAGTTTTTGTGCGCCGCGGAGCGCTGGCTCCAGCGACCACT
GCAAAATAGAGCGCGCGCGAGCCGCTCCAGCAGACGTGCTATATTCG-TTCTC---------TTTTCTACTACGACTTGA
TATACATATACGCATAGATAGATAAAAAC--AATAGGTA---GATAGATTAA--------CACGGT--------------
--AGATAAATAGTACATATATAGATTAATAAACGATAGTAGATAAAAAAC----------------AACACATAGATAGT
GCGTTGATAGT---TTTCAAGCCTCCTCCTA---------------GACAGATTAAAAAACTA-CTCG---TCCTC---C
TCCTCCTCCGACTCAGA---CTCCACCTTGGTTATGTCCTCCTCCGACGTCACAATGAAGGCGTCAAGGTACCGCTCGTC
TTCAGAGTCCCAGGACGACGCTGCTCCTAACTTGATGTTGAACTCAGCGGCCGCCTTCTGCGTATGCCGGTCCTCGCGAT
AGGCGGCTCGCTGCGCCCTTCTCTCCTCC---------CTCTTCGTCATCCTTTGCATGAAGAACTGCTGCTCGTTGATG
ACGTCCCGCGAGAAGCGTTGGCGCCACAAAT-CATGGCTTCCTCGTCCATCTCGGTGAGGCTGAGACGGCGCTCTCGCCT
TCGGTTCTCGCGACGATCCTCGTCGGTGAGAAGCCGCGTGGGAGGTGCCAGCTCCTGCGCCATCTCCCGTGTCGGCACCG
CCGGAAAGTTCATGTTCCGGCGGGGCCGCCGAAGGCGCCACGCCACCGTGTCGTACGCGCGGGCGG------------TC
TCGAAGGTGCCGAGGCCGAGGCGCACGTC-GTCGGACTGAATATCGGCGGAGAAGGCGCCGGACGGGCGCG--
>chr6B_2553
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-----------------------------------------------------------------TGTAGTACGATTTGA
TACACATATAGGCATAGATAGATTAAAAC--A----------AATAGATAGATAGATTAAAC------------------
---GATAAATAGTAGATAGGTAGATTAA--A-CGATAGATA--AAACAAT----------------GATACATACATAGT
GCGTAGATAGT---TCAT-ATCCTCCTCCTACGATAGATA--AAACGATAGATAAAAA----A-CTAC---TCGTC---G
TCCTCCTCCGACTCGGA---CTCCACCTCGGTGATGTCCTCCTCCGACGTCACAATGAATGCGTCAAGGTACCGATCGTC
TTCAGAGTCCCAGGATGACGCTGCTCCTAGCTCGATGTTGAACTGAGCGGCCGCCTTCCGCATACGCCTGTCCTCGCAAT
AGGTAGCTCGCTCCACCCTCCTCTCCTCC---------CTCTCTACTCTCCTTTCCGCAAAGAACTGCTGCTCATTGATG
ACGTCCTGCGGGAAGCGTTGGCACCACAGCGCCATGGCTTCCTCGTCCATCTTGGCAAGGCTGAGACAACGCTCCCGTCT
CCGGTTCTCGCGACGATCCTCGTCGGTGAGAAGCCGCGGGGGAGGTGCCAGCTCCTGCACCATCTCCCACGTCGGCACCT
CCGAGAAGTTCCTGTCCCGGCGGGATCGCCGGAGGCGCCACGCTGCCGCGTCGTACGCGCGGGCGGCCTCATGGGCGGTC
TCGAAGGTGTCGAGGCTGAGGCGCACATT-GCCAGACCGAATCTCGGCGGAGAAATCGCCGGACGGGC-----
>chr7B_2574
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------TATAGGCATATATAGATAGAAAC--C----------GATAGATAAA--------AACGAT--------------
--AGATAGATAGTACATAGATAGAT-------------------AAAAACAATAGATAAAAAA---GATACATAGATAGT
GCATAGATAGT---TCAT-AGCCTCCTCCAACGATAGATA--AAATGACAGATAAAAA----AACTAC---TACTC---G
GCG---------TCCTACTCCTCCGACTCGGTTATGTCCTCCTCCGACGTCTCAATGAAGGCATCAAGGTACCGATCGTC
GTTGGAGCCCCAGGACGA-GCTTCTCCTAGCCCGATGTTAAATTCAGCGGTCGCCTTCCACGTATGCCTGTCCTCGCGAT
AGGTGGCTTGCTCCACCCTCCTCTCCTCC---------TTCTCCATCCTCCTTTGCGCGAAGAATTGCTGCTCGTTGATG
ACGTCCTGCGGGAAGCGTTGGCGCCACAGCGCCATGGCTTCCTCGTCCATCTCGACGAGGCTGAGACGGCGCTCCCGCCT
CCGGTTCTCACGAGGATCCTCGTTGGTGATAAGCTACGGGGTAGACGCCAGCTCCTGCGCCCGCTCCTGCGTCGGCACCT
CAAGG-AGTTCATGTCCCTACGGGACCGCCGGAGGCGCCACGCCGCTGCGTCGTACACGCGGGCGACCTCGTGGGCGGTG
TCGAAGGTGGCGAGGCCGAGCCGCATGTC-GCCGGACCGAATCTCGGCAGAGAAGGAGCCGGAGGGGC-----
>chr7B_2632
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--AGATAGATAGTACATAGATAGAT-------------------AAAAAC----------------GATACATAGATAGT
GCATAGATAGT---TCAT-AGCCTCCTCCTACGATAGATATAAAACGATAGATAAAAAAACTA-CTCCTTGTCGTC---C
TCATCCTCCGACTCAAA---CTCCGTCGTGGTGATGTCCTCCTCCGACGTCTGAATGAAGAGGTCAAGATACCGATCGTC
CTCGGAGTCCCAGGACGACTCTTCTCCTAGCTCGATGTTGAATAGTGCAACCTGCTTCCGTGTACGCCTGTCCTCGCGAT
AGGCGGCTCGCTGTGCCCTCCTCTCCTCC---------CTCTCCGCCCTCCTTTGGGCGAAGAACTGTTGCTCGTTGATG
ACGTCCTGCGGGAAGCATTAGCGCCACAGCTCCATGGCTTCCTCGTCCATCTCGGCGAGGCTGAGACGCCGCTCCCGCCT
CCGGTTCTCGCGACGATCCTCGTCGGTGATAAGCCGCGGGGGAGGCACCAGCTCCCACGT--------------GCACCT
CTGGGAAGTTCATGTCCCTACAGGACCGCCGGAGGTGCCACGCCGCCGCATCGTACGCGCGAGTGGCCTTGTGGGCGGTG
TCGAAGGTGCCGAGGCCGAGGCGCATCTC-GATGGACCGAATCTTGGCGGAGAAGGAGCCGGAGGGGCGCG--
>chr2D_2701
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--------------------------------GATAGATA--AAAAAATAGATTATTC----AACTAC---TCCTC---G
TCG---------TCCGA---CTCCTCCTCGGTGATGTCCTCCTCCGACGTCTAACTGTAGGCGTGAAGATACTGATCGTC
ATCAGATTCCCAGGGCGACGCTGCTCCTAGCCTCATGTTGAATTGAGCGTCCGCTTTTCGCCTACGCTTGTCCTCGCGAT
AGGCGGCTCGCTCCGCCCTCCTCTTATCT---------CTCTCCGCCCTCCTTTGCTCGTAGAACTCGTGCTCGTTGATC
ATGTCCCATGGGAAG------------AGCGCCATGGCTTCCTCGTCCATCTCGGCGATGCCGAGACGGTGCTCCCGCCT
CCGGTTGTCGCGACGATCCTCGTCGGTGATAAGCCGCGACAGAGGCGCGAGCTCCTGTGCCCGCTCCCGCGTCGACACGT
TGGGGAAGTTCAATGTTCTATGAGGCCACCGGAGGCGCCACGCCGCCGCGTCGTACGCGCGGGCGGCCTCGTTGGCGGTG
TCGAAATTGCCGAGGCCGAGGCGCATC-C-GCGGAACCGGATCTCGGTGGAGAAGCCGCCGGAGGGGC-----
>chr2B_2701
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--------------------------------GATAGATA--AAAAAA-AGATAATTC----AACTAC---TCCTC---G
TCG---------TCCGA---CTGCTCCTCGGTGATGTCCTCCTCCGACGTCTGACTATAGGCATGAAGATATCGATCGTC
GTCAGATTCCCAGGGCGACGCTGCTCCTAGCCTCATGTTGAATTGAGCGTCCGCTTTTCGCCTACGCTTGTCCTCGCGAT
AGGCAGCTCGCTCCGCCCTCCTCTTATCC---------CTCTCCGCCCTCCTTTGTGTGTAGAACTCGCGCTCGTTGATG
ATGTCATGTTGGAAGTGTTGGCGCCACAGCGCAA-----------TCCATCTTGGCGATGCCGAGACGGTGCTCCCGCCT
CCGGTTGTCGTCACGATCCTCGTCGGTGCTAAGTCGCGGCAGAGGCACGAGCTCCTGCGCCCGCTCCTGCATCGGCACGT
TGGGGAAGTTCAATGTTCTATGAGGCCACCGGAGGCGCCACGCCGCCGCGTCGTACGCGCGGGCAGCCTTAGTGGCGGTG
TCGCAATTGTCGAGGCCGAGGCGCATC-CCGCAGAACCGGATCTCAACGGAGAAGCAGCCGGAGGTGTGCACG
>chr5D_2743
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------------TCCGA---CTCCGCCTCGGTGATGTCCTCCTCTGACGTCTAAATGAAGGCGTCAAGATAGCGATCGTC
CTCGGAGTCCCAGGACGACGCTGCTCCTAGCTCGATGTTGAAGAGCGCGGTCTGCTTCCGTGTACGCTTGTCCTCGCGAT
AGGCGGCTCGCTCCGCCCTCCTCTCCTCC---------CTCTCCGCCCTCCTTCGCGTGAAGAACTGCTGCTCGTTGATG
ACGTCCTGCAGAAAGCGTTGGCGTCACTACTCCATAGCTTCCTCGTCCATCTCGGCGAGGGTGAGACGGCGCTCCCGCCT
CCGGTTCTCGCGACGACCCTCGTCGGTGACAAGCCGCGGGGGAGGCACGAGCTCCTGCGCCATCTCCCGCGTCGGCACTT
CCGGGAAGTTCAAGTCCCTGTGATGCCACCGGAGGCGCCACGCCGCCGCGTCGTACGCGCGGGCGGCCTTGTGGGGTGTC
TCGAAAGTGCCGAGGCCGAGGCGCATGT-CGCCTAACCGGATTTTGGCGGAGAAGGAGCCGGAGGGC------
>SNPs
-SSSS-------S----S-----------S--------SS------------S----S-------S------S-S--S--
S-------------S------------------S----S-------------S-S----S--------------------
--S--------------S-------S--S----SS--S-SS------S---------S-------S-----------S--
SSSS----------S----SS------S--------S-S----S-----------------------S------S-----
------S-S------------------------------------------S-S--------------SSS----S----
----------S-------SS---SSS---SS---S------SS---------------S--S---SS-------S-----
S-----------S-------S-S---------SS----S-------------------S-----S---S-----------
---------------------------S-----------------S----S----S------SS-SSS------------
----------------------------------S---S-----------------------------------------
----S----------------------------S---------SS-S---------------S-----------------
------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--------------S--
SSS-S--SSSSSSSS--S---SSSSSSSSSSS--S-S----S-S--S-S----------SS--S--SSSS-S-SS-SSS-
SS-S-S------S----S--S-------------S----------SSSS--------------SS------SSS------
S------------S------S------------S--------------------------------------------S-
--------------------------------------------------S----------------------S----S-
-----------------------S------------------------------------------------------S-
-------------------------------------------S------S-----------------------------
--------------------------------S--------------------------S----S---------------
S-------------------------------------------------------------------------S-----
-----------------------------------------------------S--------------------------
-------------------------------S----------------S-------------------------------
-------S-----------------------S--------------------S------S--------------------
------S-----------S---------------------------------------------------S---------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
----------------S----S----------------------------------------------------------
-------------------------------------------------------------------S------------
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---------------------------------S----------------------------------------------
-----------------------S-------------------------------------S--S---S-----------
-SSSSSS-----S--------------------S----S-SSSSSSSSSSSSSSSSSS----------------------
-S--S-------S-------SSSS----------------S---SSS---S----------------S----------SS
------------------------------------------------S-------------S-----------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
-S-------------------------S-------------------------------------S--------------
-----------------------------------------------S------------------------S-------
-----------------------S-------S------------------------------------------------
-----------S-------------------------------S------------S--------S--------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S------S---------
--------------------------------S---------------------S--------------------S----
------------------------S-----------------------------------------------S-------
-------------S-----------------------------------------------------------
>forward_226
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----------------------------------------------GAAGGCCCTTTGCAACACAG--------------
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>reverse_1441
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GTGATGATGCAGGTCACCGA------------------------------------------------------------
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-------------------------------------------------------------------------
>forward_411
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-----------------------------------------------------------------------GCTGGTCGG
ATTAGGTTGCT---------------------------------------------------------------------
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>reverse_3143
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----------------------ACGCGGGCAGATTCATGTAT--------------------------------------
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-------------------------------------------------------------------------
