>input_sequence_56355
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-------------------------------------------------------------------------ATGGCGG
CCCCCGCTGCTGAAGCCCCGGCGGCCGTCGCGGCCCCCGT------------TCTCCCTCCTGCCAGAAGGAAGGATGCG
GATCCGGCTCGTCTCCAAACCCCGCCGCTCCTTCCGGCCGCAGGCTGGTCGGACCTCCCGCCCGATCTCGTCCGCCGCGT
CGCCGACTCCCTCGTCGCCGCCAACGACCTCGACTGCTACATGGACTTCCGCGCCGTCTGCTCCGTCTGGCGCGCCGCCA
CCGACGACCCCAGGAGCGACCCCTTCGACCCCCGCTTTCGCCCGCGCCGGTGGGTCATCCTGG-----------------
-------------------------------ACGACGGCGACGAC------------------------CTGCTGCTGCT
GAATGCCGCCACGGGGCGCTTCCTCCGCAAGAGGATCCCGCTGCTCCGCCGCTACCACGTCCTCGCCGCCACTCCCGGCG
GCTTCTTCGTCCTGGCGGACAGGCACCCTTCTCGAGCCGCCTGCGTCTTCAATCCTCTCACCGGCGTCGTGATCCGGTTC
GCGGCACCCGTACCAACCAAGAAGGTCGCCGCCGCCAGTGTCGTCTTCGGTCC---CAGCTCTTGGCCCACGCTCACGCT
CAACTTGCTCTGCGACTCTCCTTCCAAAAGTTACTCGGCCACCCCTGACATGGAAAGTTTCGAAGAAAAGGAGCTGCAGT
TGCCCATTGAT---------------------------------------------------------------------
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---TGTCATATCTCATTGAAGGCAGTCAGAGGCGGTGTCTATGCCGACGGTGGTGGCGCTGCGCAGGGATTCAGGCACGG
GGTTTCTGTTATATTCGATATCTTCGATTTGATACAGTCACTTCATGTCCATCCATCAATGTTTTATGCTGAGGATCTTC
CTGTGGCCGGACACGCAAACGACCATACCCGGTTTTTCATCGTGGAATTTGGTGGAGAAGTGCTGATCGTCATCAAGCTG
CAGCGACGTGTCAAGGTTTTCAAGATGGACGTTAGTAGCATTGTGCCTGTGGAGAGCATCGGCAGCCATGCCATCTTCAT
CGGTCATCACAGGTGCCTGGCTGTTGACACCGATAAGTTTCCATCTGTTGAGTCCAACTGTGTCTATTACGTTGAGCGCC
TGGGTTCGTCCGCGCACATCTGCATGTACAATCTCAAGGACGAGAACGACGAGAGGATCTCAGCTGGCGATGTAGATTTC
GTGAAGCTGCACGAGTTGTTCGTCCTCGCCGCCCACCGCCCTTTTACCATCATCCAGCTTCTCTCCAGCTACACCATCAA
TGTCCGGGATTCTCAACTGCCGCTACAACAGGGCGCCAACTAA-------------------------------------
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>chr3A_1_TraesCS3A01G463900
TAAAACTTGCTGTAGTGACGCATGTCATGATCATGTCAATCCACAT-GGCGCAAAACCCTTTTTGTACATCATATACTCA
AGGAAGACCCACTCCAGCCTATCGTAAGACTTCATCATATCAAGCTTCACCACACATAAATATTTCTTTTTTTTCCTCTT
ACGTATAACATGTTCACACTCATATGCAACCAACACATTGTCCGTTATGAGCCTTTCAGGGACGAAAGCACTTTGTTCCT
CCGAGATGAGCACTGGAAGAATCATCTTCAACCTATTGGCCAGCACCCTAGTTGCCATCTTATAGAAAACATTGCAAAGA
CTCATCGGTATAAATTGTAACATTAG---CTCCGGAGTTTGGGATCATCACAATCAAAGTAGCATTG-AAAGATGCCGGA
GTTGCTTCCCCATTCAAGAAATCACGAACTGCCCCGCAGACCTCATGTTTTACCAGCGAGCAGTGACGCT-ATAGAACAA
CGTCGGGAGCCCATCTGACCTGGGATCTTTGGTTGGTC--------CCATTTGGAACAGTGAGGTTTCAATCTCCTCATC
GGCGATAACCGCCGTGAGCTTGGAGTTCATCTCGCCGGAAACCATTAGTGCA-ATATTATCCAGCAAGGCATTAGCGCCA
ACCGATCCATCAGAGAC-AAAAGGCTTTCACCGTGTTTTTTTGAAATAAATAAATTAAGTAATGGCATTGGGAATT-AAA
TGGTAAGTTATGTTTTTCTTTTTCTTTTTTGAAGGGGATTGGGCATGGTTCACAGTCCAGTCCAC----TACTCTACCT-
--ACTCGGCTCTAGTGATCCTT-GTTCCCCTTTTCA--------TCCCCTTCTTCGGTTCCTCAATTCTCCAAATTTATC
CACTCTGCTTGTGTTCGTCTGCTGATCTGGTGAGCAAATCCTCCTCTACTCGGTCGATTCCGTTGTTTCCATTACGCATT
CACGCTGCTCACCCACAGATTTGTACTATCGACGATTAGTTAGGGTTCAGTTCAGGAGCTCAAGCGCGCGGCAATGGCGG
CCCCCGCTGCTGAAGCCCCGGCGGCCGTCGCGGCCCCCGT------------TCTCCCTCCTGCCAGAAGGAAGGATGCG
GATCCGGCTCGTCTCCAAACCCCGCCGCTCCTTCCGGCCGCAGGCTGGTCGGACCTCCCGCCCGATCTCGTCCGCCGCGT
CGCCGACTCCCTCGTCGCCGCCAACGACCTCGACTGCTACATGGACTTCCGCGCCGTCTGCTCCGTCTGGCGCGCCGCCA
CCGACGACCCCAGGAGCGACCCCTTCGACCCCCGCTTTCGCCCGCGCCGGTGGGTCATCCTGG-----------------
-------------------------------ACGACGGCGACGAC------------------------CTGCTGCTGCT
GAATGCCGCCACGGGGCGCTTCCTCCGCAAGAGGATCCCGCTGCTCCGCCGCTACCACGTCCTCGCCGCCACTCCCGGCG
GCTTCTTCGTCCTGGCGGACAGGCACCCTTCTCGAGCCGCCTGCGTCTTCAATCCTCTCACCGGCGTCGTGATCCGGTTC
GCGGCACCCGTACCAACCAAGAAGGTCGCCGCCGCCAGTGTCGTCTTCGGTCC---CAGCTCTTGGCCCACGCTCACGCT
CAACTTGCTCTGCGACTCTCCTTCCAAAAGTTACTCGGCCACCCCTGACATGGAAAGTTTCGAAGAAAAGGAGCTGCAGT
TGCCCATTGAT---------------------------------------------------------------------
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---TGTCATATCTCATTGAAGGCAGTCAGAGGCGGTGTCTATGCCGACGGTGGTGGCGCTGCGCAGGGATTCAGGCACGG
GGTTTCTGTTATATTCGATATCTTCGATTTGATACAGTCACTTCATGTCCATCCATCAATGTTTTATGCTGAGGATCTTC
CTGTGGCCGGACACGCAAACGACCATACCCGGTTTTTCATCGTGGAATTTGGTGGAGAAGTGCTGATCGTCATCAAGCTG
CAGCGACGTGTCAAGGTTTTCAAGATGGACGTTAGTAGCATTGTGCCTGTGGAGAGCATCGGCAGCCATGCCATCTTCAT
CGGTCATCACAGGTGCCTGGCTGTTGACACCGATAAGTTTCCATCTGTTGAGTCCAACTGTGTCTATTACGTTGAGCGCC
TGGGTTCGTCCGCGCACATCTGCATGTACAATCTCAAGGACGAGAACGACGAGAGGATCTCAGCTGGCGATGTAGATTTC
GTGAAGCTGCACGAGTTGTTCGTCCTCGCCGCCCACCGCCCTTTTACCATCATCCAGCTTCTCTCCAGCTACACCATCAA
TGTCCGGGATTCTCAACTGCCGCTACAACAGGGCGCCAACTAACTTTTGGCTATGAAATGGTTTGACTTTCTCTCTAGTA
CTCCCTCTGTAAACTAATATAAGAGCGTTTAGATTACTACTTTAGTGATCTAAACACTCTTATATTAGTTTACGGAGGAA
GTACCTTGCTAAGAAACAGACTTGACTCT-A-GTTATGT----------------------GGAACTGCTGTTTGTGGGC
T----TAATTAGGACCAGATATGAACCCAATGCTCCATCTGTTTT-GCCTGATGCTATCT------TTTGTCTATTTGCA
CTTGTTCTTCCATTGTT-CACTTAGTAATGCAGTCTGATGCTAGCAAATTTCAGTTCAACATTTTTTTCCATTTCTGAAT
TCAGCCCTGCAACTGAATCGTT----------------------------------------------------------
-------GAATGCATGCGTCTCTCTGTTGTTTCCATTATATTTTTGTTAATATTTCAGTATG-AATGTAGGCTCAG-TTT
TTTCCGCCTTTCTGAATCTGGCTCTGCAATTGAACCGTTGAACGGTTATCA--TACCTGGTTGTTCCCCGTAGGTTTTGT
TCCTTGTTGGATTTCTCATATCTCATTGCAGCTTAACATTGATGTTAAGATGTGCTGTTCATATACAAATCTCTGACAAT
TTGTGGTTGCTGCTTCTAGAGGGATTCTGTAGATTCAGATATTTTGCATATTTTCTCTGGGCAGATACTCTATCTTCACA
TAAATTGTAAGTATCCTGTTTTGAGGATAAAGGCGTTCTGATTGAATCATACTATATAAAATAGTGTTGGTTCAG--TAT
AGGGATATTGCTTGGTTATGCAGGGGTGGAGTAATATCAAACTCATACGTACTAAATACTCCTAGATACTAGTAGATGAG
AGTACGTAGATTCTATTTTTCCTGCTAGCTGTTTTTTGCAGTTATATTTAGATTCGAATGGGTATGCAGACATCAGTT--
TACATATATACACATTGGCCTAACTGGACCGACTTTAATCATGCAATTTGAATATTGGCAATGTGCTGTTGTAACTTCAC
TCTTACTCGTGTCAGTCATAGGTTATATATAA
>chr3D_1
TAAAACTTGCTGTAGTGACGCATGTCATGATTATGTCAATCCACATAGGCGCAAAACCCATCTTGTACATCATATACTCA
AGGAAGACCCACTCCAGCCTATCGTAAGACTTCATCATATTAAGCTTCACCACACATAAATATTTCTTTTTGTTCCTCTT
ACGTAC------------------------------------------GAGCCTTTCGGGGACGAAAGCACTTTGTTCCT
CCGAGATGAGCACCGAAAGAATCATCTTCAACCTATTGGGCAGCACCCTGGTTGCAATCTTATAGAAAACATTGCAAAGA
CTAATCGGTATACATTGTAACATCAG---CTCCGGAGTTTGGGATCATCACAATCACAGTAGCATTG-AAAGATGTCGGA
GTTGCTGCCCCATTCAAGAAATCACGAACTGCCCCGCATACCTCATGTTTTACCAACGAGCAGTGACGCTGATAGAACAA
CGCCGGGAGCCCATCTGACCTGGGATCTTTGGTTGGCCCCATTTCACCATTTGGAACAGCGAGGTTTCAGTCTCCTCATC
GGCCATAGTCGTCGTGAGCTTGGAGTTCATCTCGCCGGAAAACCGCCAGTCCGATATTATCCAGCAAGGCATTAGCGCCA
ACCGATCCATCAGAGGCAAAAAGGTTTTCGCCGTG-TTTTTTGAAATAAATAAATCAAGTAATGGCATTGGGAATTAAAA
TGGTAAGTTATGTTTTTCTTTTTCTTTTTTGAAGGAGATTGGGCATGGTTCACAGTCCAGTCCAC----TACTCTACCT-
--ACTCGGCACTGGCGATCCTT-GTTCCCCTTTTCCTCCGTCTCTCCCCTTCTTTGGTTCTTCAATTCTCCAAATTTATC
CACTCTGCTTGTGTTGGTCTGCTGATCTGGTGAGCAATCCCTCCTCTACTAGGTCGATTCCGTTGTTTCCATTACGCATT
CACGCTGCTCACCCACAAATTTGTACTATCGACGATTAGTTAGGGTTCAGTTCAGGAGCTCAAGCGCGCGGCAATGGCGG
CCCCCGCTGCTGAAGCCCCGGCG------------CCCGTCGCGGCCCCCGTTCTCCCTCCTGCCAGAAGCAAGGATGCG
GATCCGGCTCGTCTCCAAACCTCGCCGCTCCTTCCGGCCGCAGGCTGGTCGGACCTCCCGCCCGATCTCGTCCGCCGCGT
CGCCGACTCCCTCGTCGCCGCCAACGACCTCGACTGCTACATGGACTTCCGCGCCGTCTGCTCCGGCTGGCGCGCCGCCA
CCGACGACCCCAGGAGCGACCCCTTCGACCCCCGCTTTCGCCCGCGCCGGTGGGTCATCCTGG-----------------
-------------------------------ACGACGGCGACGAC------------------------CTGCTGCTGCT
GAACGCCGCCACGGGGCGCTTCCTCCGCAAGAGGATCCCGCTGCTCCGCCGCTACCACGTCCTCGCCGCCACTCCCGGCG
GCTTCTTCGTCCTGGCGGACAGGTACCCTTCTCGAGCCGCCTGCGTCTTCAATCCTCTCACCGGCGTCCTGATCCGGTTC
GCGGCACCCGTACCCACCAAGAAGGTCGCCGCCGCCACTGTCGTCTTCGGTCG---CAGCTCTTGGCCCACGCTCACGCT
CAACTTGCTCTGCGACTCTCCTTCCAAAAGTTACTCGGCCACTCCTGACATGGCAAGTTTCCAAGAAAAGGAGGTGCAGT
TGCCCATTGAT---------------------------------------------------------------------
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---TGTCATATCTCATTGAAGGCAGTCAGAGGCGGTGTCTACGCCGACGGTGGTGGCGCTGCGCAGGGATACAGGCACGG
GGTTTCTGTTATATTCGAGATCTTCGATTTGATACAGTCACTTCATGTCCATCCATCAATGTTTTATGCTGAGGATCTTC
CTGTGGCCGGACACGCAAACGACCATACCCGTTTTTTCATCGTGGAATTCGGTGGAGAAGTGCTGATCATCATCAAGCTG
CAGCGATGCGTCAAGGTTTTCAAGATGGACATCGGTAGCATTGTGCCTGTGGAGAGCATCGGCAGCCATGCCATCTTCAT
CGGTCATCACAGGTGCCTGGCTGTTGACACCGATAAGTTTCCATCTGTTGAGTCCAACTGTCTCTACTACGTTGAGCGCC
TGGGTTCGTCCGCGTACATCTGCATGTACAATCTCAAGGACGAGAAAGACGAGAGGATCTCAGCTGGCGCTGTAGATTTC
GTGAAGCTGCACGAGTTGTTCGTCCTCGCCGCCCACCGCCCTTTCACCATCATCCAGCTTCTCTCCAGCTACACCATCAA
TGTCTGGGATTCTCAACTGCCGCTACAACAGGGCGCCAACTAACTTTTGGCTATGAAATGGTTTGACTTTCTCTCTAGTA
C-------------------------------------------------------------------------------
----CTTGCTAAGAAACAGACTTGACTCT-AGGTTATGT----------------------GGAACTGCTGTTTGTGGGC
T----TAATTAGGACCAGATATGAACCCAATGCTCCATCTGTTTT-GCCTGATGCTATCT------TTTGTCTATTTGCA
CTTGTTCTTCCATTGTT-CACTTAGTAATGCAGTCTGATGCTAGCAAATTTCAGTTCAACATTTT-TTCCATTTCTGAAT
TCAGCCCTGCAACTGAATCGTTAAATGCATGCGTCTCTCTGTTGTTTCCATTATATTTTTGTTAATATTTCAGTATGCTG
AATCGTTGAATGCATGCGTCTCTCTGTTGTTTCCATTATATTTTTGTTAATATTTCAGTATG-AATGTAGGCTCAG-TTT
TTTCCGCCTTTCTGAATCTGGCTCTGCAATTGAACCGTTGAACAGTTATCA--TACCTGGTTGTTCCCCGTAGTTTTTGT
TCCTTGTTGGATTTCTCATATCTCATTGCAGCTTAACATTGATGTTAAGATGTGCTGTTCATATACAAATTTCTGACAAT
TTGTGGTTGCTGCTTCTAGAGGGATTCTGTAGATTCAGATATTTTGCATATTTTCTCTGGGCAGATACTCTATGTTCACA
TAAATTGTAAGTATCCTGTTCTGAGGATAAAGGCGTTCTGATTGAATCATAC--TATAAAATAATGTTGGTTCAGTATAT
AGGGATATTGCTTGGTTATGCAGGGGGGGAGTAACATCAAACTCATACGTACTAAATACTCCTAGATACTAG---GTGAG
AGTACGTAGATTTTATTTTTCCTGCTAGCCGTTTTTTGCAGTTATATTTGGATTCGAATGGGTATTCAGACATCAGGT--
TATATATATACACATTGGCCTAATTGGACCGACTTTAACCATGCAATTTGAATATTGGCAATGTGCTGTTGCAACTTCAC
TCTTACTCGTGTCAGTCATAGGTTATATATAA
>chr3B_2
-AAAACTTTCTATAGTGACGCATCTCATGATCATGTAAATCCACATAGGCGCAAAACCCATCTTGTACATCATATACTCA
AGGAAGACCTACTCCAGCCTATCGTAAGCCTTCATCATATTAAGCTTCACCGCATATAAATGTTTCTTTCTCTTCCTCTT
ACGTATAACATGTAGAGACTCATATGCAACCAACACATTGTCCATTATGAGCCTTTCGGGGACGAAAGCACTTTGTTTCT
CCGAGATGAGCACCGGAAGAATCATCTTCAACCTGTTGGCCA---CCTTGGTTGCAGACTTGA--AAAACATTGCAAAGA
TCGATCGGTATCAATTGTAACATCAGCTCCTCCGGTGTTTGGGATCATCACAATCACAGCAGCATTCAAAAGATGTCGGA
GTTGCTGCCCCATTCAAGAAATCACGAACTGCCCCGCAGACCTCATGTTTTACAAGCGAGCAGTGACGCTGATAGAACAA
CGCCGGGAGCCCATCTGACCTGGGATCCTTGGTTGGCCCCATTTCACCATTCGTAACAGCGATGTTTCAATTTCCTCATC
GACGATAGCCGTCGTGAGCTTGGAGTTCATTTCGCCGAAAAACCGCCAGTCCGATATTATACAGCAAGACAATAGCGCCA
GCCGATCCATCAGAGGCAAAAAGGCTTTCACCGTG-TTTTTTGAAATAAATAAATCAAGTAATGGCATTGGGAATTAAAA
TGGTAAGTTATGTTTTTCCTTTTCCTTTTTGAAGGAGATTGGGCATGGTTCACAGTCCAGTCCACACTATACTCTACCT-
--ACTCGGCACTGGCGATCCTT-GTTCCCCTTTTCCTCCGTCTCTCCCCTTCTTCGGTTCCTCAATTCTCCAAATTTATC
CACTCTGCTTGTGTTCTTCTGCTGATCTGGTAAGCAATCCCTCCTCTACTCGGTCGATTCCGTTGTTTCCATTACGCATT
CACGCTGCTCACCGACGAATTTGTACTATCCATGATTAGTTAGGGTTCAGTTCAGGAGCTCAAGCGCGCGGCAATGGCGG
CCCCCGCTGCTGAAGCCCCGGCG------------CCCGT------------TCTCCCTCCTGCCAGAAGGAAGGATGCG
GATCCGGCTCGTCTCCAAACCTCGCCGCTCCTTCCCGCCGCAGGCTGGTCGGACCTTCCGCCCGATCTCGTCCGCCGCGT
CGCCGACTCCCTCCTCGCCGCCAACGACCTCGACTGCTACATGGACTTCCGCGCCGTCTGCTCCGGCTGGCGCGCCGCCA
CCGACGACCCCAGGAGCGACCCCTTCGACCCCCGCTTTCGCCCGCGCCGGTGGGTCATCCTGG-----------------
-------------------------------ACGACGGCGACGAC------------------------CTGCTGCTGCT
GAATGCCGCCACGGGGCGCTTCCTCCGCAAGAGGATCCCGCTGCTCCGCCGCTACCACGTCCTCGCCGCCACTCCCGGCG
GCTTCTTCGTCCTGGCGGACAGGTACCCTTCTCGAGCCGCCTGCGTCTTCAATCCTCTCACCGTCGTCCTGATCCGGTTC
GCGGCACCTGTACCCACCAAGAAGGTCGCCGCCGCCACTGTCGTCTTCGGTCG---CAGCTCTTGGCCCACGCTCACGCT
CAACTTGCTCTGCAACTCTCCTTCCAAAAGTTACTCGGCCACTCCTGACATGGAAAGTTTCCAAGAAAAGGAGGTGCAGT
TGCCCATTGAT---------------------------------------------------------------------
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---TGTCATATCTCATTGAAGGCAGTCAGAGGCGGTGTCTACGCCGACGGTGGTGGCGCTGCGCAGGGATTCAGGCACGG
GGTTTCTGTTATATTCGAGATCTTCGATTTGATACAGTCACTTCATGTCCATCCATCAATGTTTTATGCCGAGGATCTTC
CTATGGCCGGACACGCAAACGACCACACCCGGTTTTTCATCGTGGAATTCGGTGGAGAAGTGCTGATCGTCATCAAGCTG
CAGCCATGCGTCAAGGTTTTCAAGATGGACATCGGTAGCATTGTGCCTGTGGAGAGCATCGGCAGCCATGCCATCTTCAT
CGGTCATCACAGGTGCCTGGCTGTTGACACCGATAAGTTTCCATCTGTTGAGTCCAACTGTGTCTACTACGTTGAGCGCC
TGGGTTCGTCTGCGTACATCTGCATGTACAATCTCAAGGACGAGAAAGACGAGAGGATCTCAGCTGGCGCTGTAGATTTC
GTGAAGCTGCACGAGTTGTTCATCCTCGCCGCCCACCGCCCTTTCACCATCATCCAACTTCTCTCCAGCTACAGCATCAA
TGCCCGGGATTCTTAACTGCCGCTACAGCAGGGCGCCAACTAACTTTTGGCTATGAAATGGTTTGCCTTTCTTTCTAGTA
C-------------------------------------------------------------------------------
----CTTGCTAAGAAACAAACTTGACTCTTAGGTTATGT----------------------GGAACTACTGTTTGTGGGT
T----TAATTAGGACCTGATATGAACCCAATGCTCCATCTGTTTT-GCCTGATGCTATCT------TCTGTCTATTTGCA
CTTGTTCTTCCATTGTT-CACTTAGTAATGCAGTCTGATGCTAGCAAATTTCGGTTCAACTTTTT-TTCCATTTCTAAAT
TCAGCCCTGCAA-----------------------------------------------------------------CTG
AATCGTTGAATGCATGTGTCTCTCTGTTGTTTCCAGTATAGTTTTGTTAATATTTCAGTATG-AATGTAGGCTCAGTTTT
TTTCCGCCTTTCTGAATCTGGCTCTGCAATTGAACTGTTGAACAGTTATCA--TACCTGGTTGTTCTCCGTAGGTTTTGT
TCCTTGTTGGATTTCTCATATCTCATTGCAGCTTAACATTGATGTTAAGATGTGCTGTTCATATACAAATTTCTGACAAC
TTGTGGTTGCTTCTTCTAGAGGGATTCTGTAGATTCAGATATTTTACATATTTTCTCTGGGCAGATACTCTATGTTCACA
TAAATTGTAAGTATCCTGTTCTGAGGATAAAGGCGTTCTGATTGAATCATAC--TATAAAATAATGTTGGTTCAG--TAT
AGGGATATTGCTTGGTTATGCAGGGGTGGAGTAATATCAAGCTCATATGTACTAAATACTCCTGGATACTAG---ATGAG
AGTACGTAGATTATATTTTTCCTGCTATCCGTTTTTTGCAGTTATATTTAGATTCGAACGGGTATTCAGACATCAGGTTA
TATATATATACGCATTGGCCTAATTGGACCGACTTTAATCATGCAATTTGAATATTGGCAATTTGCTGTTGCAACTTCAC
TCTTACTCGTGTGAGTCATCGGTTATATATAA
>chr3D_724
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--------------------TTTCTTTTT--AAGAAGATTGGTCATGGTTCGGAGTCCAGTCCAC----TACTCTACCAC
CCACCGGGCACTGGCGATCCTTTGTTCCCCTTTCCCTCTGGCGGTGCTCCTCTTCTTGGGCTCCTGCT------------
----------GTGCTCGTCTGCTGATCCGGTGAGCAAATCCCCCCCCACTCGATCGATTCCGTTGTTTCCATTACGCATT
CACGCTGGTCACCCACAAATTTGTACTATCGATGATTAGTTAGGGTTCAGTTCAGGAGCTCAAGCGCGCGGTAATGGCGG
CCCCCGCTACTGAAGCCCCT------------------GT------------TCTTCCCCCCGCCAAAAGGAACAAGGCG
GATACGAGTCTTCTGCATACCTCAGCGGCCCTTCCGGCCGCAGACTGGTCCGCCCTCCTGCCCGATCTCGTCCGTCGCGT
CGCTGACTCCCTGCTCGCCACCAACGACCTCGACTGCTACATGGACTTCCGCGCCGTCTGCTCCGGCTGGCGCGCCGCCA
CCGACGACCCCAGGAGCGACCCCTCCGATCCCCGCTTCCGCCCGCAGCGGTGGGTCATCCTCGACGACGGCGCCGACCCC
CGCTTCCTCCCGTACCGGTTGGTCTTCCTGAACGACGGCGCCGAC------------------------CTGCTCCTGCT
GAACGCCGCCACGGGGCGCTTCCTCCGCAAGAGGACCCCGCTGCGCCGCCGCTACTCCGTCGTCGCCACCACTCCTGGCG
GCCTCTTCGTCCTGGCCGACCGGAACCATTCTCGAGCCGCCTGCGTCTTCAATCCTCTCACCGGCGTCCTGATCCGGTTC
GCGGCACCCGTGCCCACCGAGGAGGTCGCCGTCGCCACTGTCGTCTTCGGTCG---CGGCTCTT------CGCCCACGCT
CAACTTGTTCTGCGACTCTTCTCTGAACTTTTACGTGGCTGCTCCTGTCAGTGAAAGTTTCAACAAACATAATGTTTCCA
C---------T---------------------------------------------------------------------
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---TATTATTTCTTACGGAAGGCGGTCAGAGGCGGGTGGGGATTATGTTATCCATGGAGGTATTT---------------
------TGTTATGTGCAAGATCTTCGATCTGATCGAGTCGCTTCATGTCGATCCGATCAAGTTCTTCTCTCAGGATCTTC
CTGTGGCCGGGCACACCAACGACCACGGCTGGTGTTTCCTTGTCGAATTGGGTGGCCAAGTGCTGGTTGTCATCAAGCTG
CACCGATGTGTCAAGGTTTTCAAGATGGAAGTCGATAGCATCGTGCCTGTTGAGAGCATCGGTAGCCATGCCATCTTCAT
TGGTCATCACAGGTGCCTGGCTGTTGACACCCATAAGTTCCCGTCTGTGGAGGCCAACTGCATCTACTACGTTGAGCGTC
TGGCCTCATCTGCCTACATCTGCATGTACAATCTCAAGGACGAGGAAGACGAGATGATCTCAGCTGGGGCCGTAGATTTC
ATGAAGACAGACAAGCTGTTCGTCATTGCCCCACACCGCCCTTTCACCATCATCCACCTTCTCTCCAGCTACACCATCAA
TGTCCGGGATTCTCAACTGCCGCTACAACAGGACGCCAACTAACGTTTGGCTATGAAATGGTTTTATTTTCTCTCTTAGT
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>chr3A_852
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---------------------------------------------------------------CTGCT------------
----------GTGCTCGTCTGCTGATCCGGTGAGCAAATCCTCATCCACTCGATCGATTCCGTTGTTTCCATTACGCATT
CACTCTGCTCACCCACAAATTTGTACTATCGATGATTAGTTAGGGTTCAGTTCAGGAGCTCAAGCGCGCGGTAATGGCGG
CCCCCGCTGCTGAAGCCCCT------------------GT------------TCTTCCGCCCGCCAAAAGGAACAAGGCG
GATCCGATTCTTCTGCATACCTCAGCGGCCCTTCCGGCCGCAGATTGGTCCGCCCTCCTGCCCGATCTCGTCCGCCGCGT
CGCTGACTCCCTGCTCGCCACCAACGACCTCGACTGCTACATGGACTTCCGCGCCGTCTGCTCCGGCTGGCGCGCCGCCA
CCGACGACCCCAGGAGCGACCCCTCCGACCCCCGCTTCCGCCCGCACCGGTGGGTCATCCTCGACGACGGCGCCGACCCC
CGCTTCCTCCCGTACCGGTTGGTGTTCCTGAACGACGGCGCCGAC------------------------CTGCTCCTGCT
GAACGCCGCCACGGGGCGCTTCCTCCGCAAGAGGACCCCGCTGCGCCGCCGCTACTCCGTCGTCGCCACCACTCCCGGCG
GCCTCTTCGTCCTGGCCGACCGGAACAATTCTCGAGCCGCCTGCGTCTTCAATCCTCTCACCGGCGTCCTGATCCGGTTC
GCGGCACCCGTGCCCACCGAGGAGGTCGCCGTTGCCACTGTCGTCTTCGGTCG---CGGCTCTT------CGCCCACGCT
CAACTTGTTCTGCGACTCTTCTCTGAACCTTTACATGGCTGCTCCTGTCAGTGAAAGTTTCAACAAACATAACATTTCCA
C---------T---------------------------------------------------------------------
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---TATTATTTCTTACGGAAGGCGGTCAGAGGCGGGTGGGGATTATGTTATCCATGGAGGTATTT---------------
------TGTTATGTGCAAGATCTTCGATCTGATCGAGTCGCTTCATGTCGATCTGATCAAGTTCTTCTCTCAGGATCTTC
CTG-GGCCGGGCACACCAACGACCACAGCCGGTGTTTCCTTGTCGAATTGGGTGGCCAAGTGCTGGTCGTCATGAAGTTG
CACCCATGTGTCAAGGTTTTCAAGATGGATGTCGATAGCATCGTGTCTGTTGAGAGCATCGGTAGCCATGCCATCTTCAT
TGGTCATCACAGGTGCCTGGCTGTCGACACCCATAAGTTCCCGTCTGTTGAGGCCAACTGCATCTACTGTGTTGAGCGTC
TGGATTCATTTGCCTACATCTGCATGTGCAATCTCAAGGACGAGAAATATGAGATGATCTCAGCTGGGGCCGTAGATTTC
ATGAAGACAGACAAGCTGTTCGTCATCGCCGCACACCGCCCTTTCACCATCATCCACCTTCTCTCCAGCTACACCATCAA
TGTCCGGGATTCTCAACTGCCGCTACAACAGGACGCCAACTAAGGTTTGGCTATGAAATGG-------------------
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>chr3A_1084
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--------TCGTCTCCGAGCCTCGCCGGTCCTTCGGGCCGCGGGCTGGTCCGCCCTCCCGCCCGACCTCGTCCGCCGCGT
CGCCGACTGCCTTCTCGCCACCAACGACCTCGACTGCTACATGGACTTCCGCGCCGTCTGCTCCGGCTGGCGCGACGCCA
CCGACGACCCCAGGAGCGACCCCTCCGACCCCCGCTTCCGCCCGCGCCGCTGGGTCATCCTCCTCGACGAGGGCTTCCAG
C------------------------TCCAGAGCGACGGCGACGCCGACGGCGGCGCTGGTGGCGAGCTGCTGCTCCTGCT
GAACGCCGCGACGGGGCGCTTCATCCGCAAGAGGCTCCCGCTGCTCCGCCGCTACTACGTCGTGGCCACCACCCTCGGCG
GCCTCTTCGTCCTGGCGAACAGGAACCCTCCCCACGCCGCCCGCGTCTTCAACCCGCTCACCGGCGTCCTAGTCCGGTTC
GCGGCGCCCGTGCCCGCCGAGAAGGAGGTGTCCGCCTTCGTTAAAAGTGACAGCTCCGGCTTCT------GGCCCCTGCT
CGGCTTGCTCTGCGCCTCATCTCGCAGGCCGTGCGTGGCTGGTCCCGACAATGATAGTTTCTTCTGTTAGGTTTAATCTT
GATTCATGTATCTGCATATTTAGTTTGCTTTTGTTATGCATGTTGCATAGGTTAGAGAGTAGCTAGTCCGGTGAAGTTTC
AGCGGAGGCATGCGGAGACTGCGAGATGCCGGGCTGCCGTGTGATACGGCGAGATGCCGGGCTGCTGATGGCGGCGTGAC
ACCGCGGTGCCGCGCGAGGCGGCAAGGTCGTGTGATACGGCACACACGTAGATGGCTGAAGCAGGACTGGCCGGCTGGAC
GGTGAGTTAGTTTGCATGAATGGAGTCGTCGTTAGCTGCATGTATGGGTTGGTTAGTGGGCTAGCTAAAAGGTCGGTCAT
GTAGCCATGCATGCGTTGAGTCTGTTTGTGCATGACCGAGTGTAGGTTAGTTAGCAGGTGATGCATATCCTGAAGAGATT
CTAAGAGGAGATGGTGTTATGCCGACGTGTGTAGGATAGTGGCCGAGTGCGTCGGTCAGCCTAGTGTGTGCGTGCGTGAG
TTAGTGGCTGGGTGTGAAGTCATTTGTACTGCCTATTTAAGTTCAACAAATGAATGAGAATAGGGAGGCCGTGAGGGCTG
AGCACCAAAGATGTAGCCAGTGTATTCATCAAGGAGAGAGCGCCTCGGCAAAGCTCTTGTGCTTCTTCTTGATGTATGCG
TGTGTGTGTGTTGAGTCTTCTTTCCCTTGTGTGTGTTCTTGAGAAGAGAGAAACACAAGTGAGAGTTGTGAGAGGCAACT
CGAGGAAGAAGATGAAGTGCGGCGCTGCGGGAGGCGGCGCCAACATCTTCTACGGTGGGTACAAGGCCAAGGAGTACCCT
AACTACAATTCCGCACGGATGGCGGTCGCAGGTGGTCTCTACACCAACGACGCCACAACGGGATTCATTGCAGAATCAGA
AGGCTGGTTCCC---CAAGATCTGCGATCTGATTCATGTCAATCCTCATAAAGAAGATGT--------------------
----------------------------CTGGCGTTTCCTGGTTCAACTTGGTGGACAGGTGCTGATCGTCGTCAGGCTG
CGGGGGCGCGTCAAGGTTTTCAAGTACGACGACGCCGAGCCCGTGCCCGTCGAGAGCATCGGCAGGCATGCCATCTTCGT
CGGGCACCACAGGTGCCTCGCCGTGGACGCCGACAGGTTCCCGTCCGTCGAGGCAGACTGCGTCTACTACATTGATCGAC
GGGGTTTGTCAGCCCACATCTGCGTGTACAGCCTCAGGGACGGGAAAGAGGAGAGGGTCTCTGCTGGGGCCGTCGATTTC
GTGAAGCCGCACAAGCTGTTCGTCCTCGTCGCCGACCGCCCTTTCACCGTCATCCAGCTTCTCTGCAGCTACACCATCAA
CGCCCGGGATTCTCAGCTGCCTTTGAAAGAAGACGCTGGCAACG--TTGACAAAAAATGGTTTTAATTTTCTCTCTAGTC
TTCGTTCTGTTAATTTTGGCTAAGAACTTCAGAAGAGGC-----------------------------------------
----------------------TGACTCT-AGGTTAATTAGATCACCTGTGGTGGATGGAAGGAAGTACTGTTTGTGGCC
TTAACTAATTAGGACCTGATATGAACCCAATGCTCCATCTATTTTAGCCTGATGCTATCTCTCATCTCTGTTTGTGTACA
CTTGTTCTTCCCTTGTTTCAGTTTGCAATGCAGTCTGGTGCTAGCAATAGTTGGTTCAGACTTTTTTGCTGTTTCTGAAT
TTAGCCCTGCAA-----------------------------------------------------------------CTG
AACCGTTGAATTTATGCGGTTCTCTGCAGCA-----------TTTGTTCATTTTTCAGTAGCAAATGCAGGCTCTG-TTT
TTCGCTCCTTTCTGAATTTGGTTTCGCAGTTGATCCGTTGAACATTTGTCGCGTAGCTGGTTGTTCTCCAAAGGTTTTGT
TTCTTGTTGCATTCTCTGGTCTTGCTAAGAAACCGGTTTGACTCTTGATTAGATTACCTGTGTTGGCACTACTGTTCGTG
GGCTTAATTAAGGCA-----------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TGATATGAACCCAATGCTCCA-----------------
-----------TCTGTTTTTCCTGAATGCTATCATGTGTATATGTGCACTTGTTCTTCTCTTATATCACTTACTACTAAT
GTAGTATGGTGCTAGCAAAT------------------------------------------------------------
--------------------------------
>SNPs
-----------------------------------------------------------S-S------------------
----------------------------------------S------------------------------S--------
-------------SS-S--------------------------S-------------S----------------------
-------------S-----------------------------------S-----S------------------------
--S--------------------S--------------------------------S------------------S----
------S-------------------------------------------------------------------------
--S---------------------------------S----------------------S--------------------
-------S---S-----------------------------S-SSSSSSS-S----------------------------
---------------S-------------------S-------------------S------------------------
-----------------------------------S--------------------------------------------
---------S--S-S--------------------S--------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
-----------------------SSSSSSSSSSSS---------------------------------------------
---------------------S----------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------S-----------
--------------S----------------------S--------------S---------------------------
------------------------------------------S------------------S-----------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------SS----------------------------------------------
------------------------------------------------------------------S-------------
----------------------------------------------S----------------------S----------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
---SS-----S--S-SSSSSS-SSSSS--S---SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
----------------------------------------------------------------------S---------
-------------------------------------------------------------------------S------
--------------------S-------------------------------SS---------S----------------
------------------------------------------------------------------------SSS-----
-----------------------------------------------------------------S--------------
--S--------------------S-----------------------------------------------S--------
--------------------------------
>forward_62
------------------------------------------CACATGGCGCAAAACCCTTT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>reverse_2834
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------AGTAGCATTGTGCCTGTGGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>forward_605
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TTCATCTCGCCGGAAACCAT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>reverse_3007
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------CGACGAGAGGATCTCAGCTG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>forward_656
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------GCCA
ACCGATCCATCAGAGA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>reverse_3085
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------TACCATCATCCAGCTTCTCTCC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>forward_1723
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------CCAAAAGTTACTCGGCCACC-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------
>reverse_4184
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------CTGGACCGACTTTAATCATGCA-----------------------------------
--------------------------------
