>input_sequence_56350
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-------------------------------------ATGGTGGAGCACCTCCTTGATCTTGGCGAAGATCTTATCGCCG
ACATCTTGACCAACCTGCCGACGAGGTCCGTCCTCGTCGCGCGCGCCGTCTGCATCGACTTCCGCCGCGTTGCCACCAGC
GCGGCCTTCCTCGCCGCCCACGCGCGCCGTCGCCCGCTGGCCCCGCT---------CGAGATCCTCCTCTACGACAGGAC
GACGGCAGGCCACGTCGACGACTACGTGTACCTGGACGCTCTGTCCGTCTCCGTCCGCCATCCGGGCCGCCCGGCGCGCC
GTCCGCTCGCGCGCCTCCCCGCGACCAAACCCCAGGCGGAGCTCCTGGGCGAGCAGTTCTGCCTCCCGCTGGCCTCGTGC
GA------------------------------------------------------------------------------
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---CGGCCTCCTCCTGCTCGGGACGGCCGTCGCCGGCCAGTACCTCGTCTCCAACCCCACCACGCGGCAGTGGGCCGAGC
TCCCGCGGCTGCGCCGCCAACACATTGAGGACGGCGGCCGGTCGCTGGAGTCCTTGCATACCTCCGCGTACCAAGAGTCC
GGGTTCTACTTCCACGAGCCGTCCAGCGATTACCGGCTTCTGTGTCACGTCACCTTCGAAGAAGGCTTGCCCCCGGCGTA
CTACATCTTCTCGACCGGCGCCGACGAGCCCCGCCAGCTAGACAACGTGAAAGCCGGGAGCATGGGGGACTTCTTTTCCC
CGTCTGGCTGTGACATGATCACCCCGGCGGTTCTCCGCGGGTACCTGCACTGGCTGAGGCACCCCGAGGCCGGTTCGGCC
GGCGAGATGGCGGCGTTCGACACGGCGGACGAGACTTTCCGGCGGATGCCTGCCCCGCCCGTGGCCAACGAGCTCTTGGC
CAGACTGCTCGTCGCGGACGGGTCGCTCATGGCGTCCGAGTTCAGGAAGCTAGCCGTGGACCTGTGGGTGCTCCAGGGTT
ACGCTGGCGCCGCTTCTGCATCCGCGGGAGGGACGAGGTGGGAGCTTCGTCACAGCTTTGAGGTGCCGTGGCAGGCCAGA
ATGCCGACGTCCGCCCTGGTCGTGATCGGCGGCGACGAGGAGGGGGACGTCGTCTTGGGCACCCGCCATGGTGTGGCCGT
GTACAACGTGCGGAGCGGGACGGTCAGGGCCGTCGACGTCGGGCCCAAGGGCTCTAAGGGCTTTAGACTGACGCAGCGCG
CGCTAAGGATACGGGAGAGTTTGGTGCGGCACACGTTTTTCGAGACGCAGCGGCATCCCGGCATTCCATCGTTGTATTGG
CGGTTTTGTTCTTGTTAA--------------------------------------------------------------
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-------------------
>chr2D_1_TraesCS2D01G120700
GAAAAACAGAAAAGGAAATACTCACACTAACCTCCACGTAAGACCAATGATATAGGAATTAGATGTGCGATATTTATGAC
ACATCTAGATGTGCTTTAGCAAATCTGATTTGAAAAATATCAATTTCACATATTTTAAAGGGCAGTACTCTGCGCCGGCG
CACCGGCGCAAGTTTCGGCCGGTCCACCCAGCGACGTTCGATTTGGAAGCGCATAACTGTCAGATATGTCCCGCACCGCA
TCCCCTTTTGTCATCTACCCCCATGGGAAAAAAAGAGGAGAAAAAAGGGAGCACCGCATTGATACAGCAACTTCAATAGG
GAAGGTCATCTTTTTTGC--------------------------------------------------------------
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-------------------------------------------------------------------------------A
CATTGTTATCGTGATGCTAATTCGGTAGCTCATGAGCTAGCTAAATTGAGTTTTTGTAATAAGAGTGATGATAATTGGAC
TAATGAACCTCCGGGTTTCCTTATCAGCCAATTAGTGAACGATGTAATTATTTTGTGATTTAATAAAGCTAGCCATGATG
ACCTTTCCCCCTCAAAAAAGTCTCCAAGGGCTAGTCCTGAATGGTCTCGTTTAAAAAAATTACAAAATAATGTTTAAATT
TGCCACGTGACAAGTTTGAAAAAATTATATATCTTCCATGCACATTTTTTTTGAAAAATTGCCATGTACCTATAAAACAA
TAAATTGCATATTTTTGTTACCTAGTAAAAAAATAGAGAGGAGGAACTAGGATTAAATTCCAGGTCTCTTGGGAGGAGGC
TTTAGGCACTAGACCGGACATTCTGATTGGTGACGATGGCGACTGTGATCCGACAGGGCAGGCATAACATTTGCTAGAGA
CCTAAGGTTCGTCCAATAATATTTTCCGGAGAG-AAAAGGCGTGTATGGTTGCGTTTCAATGTTTGTATC--TATATCCA
AACTCGTGAAGAATAGCCATGG----TATCAGAGTTCGATTCAAGAGAGATTCCTCCTTGATTAACTTCTAAGCAC----
-----GAAGCACGGAAAGCGCAGATAATCTATCGACCATGGTGGAGCACCTCCTTGATCTTGGCGAAGATCTTATCGCCG
ACATCTTGACCAACCTGCCGACGAGGTCCGTCCTCGTCGCGCGCGCCGTCTGCATCGACTTCCGCCGCGTTGCCACCAGC
GCGGCCTTCCTCGCCGCCCACGCGCGCCGTCGCCCGCTGGCCCCGCT---------CGAGATCCTCCTCTACGACAGGAC
GACGGCAGGCCACGTCGACGACTACGTGTACCTGGACGCTCTGTCCGTCTCCGTCCGCCATCCGGGCCGCCCGGCGCGCC
GTCCGCTCGCGCGCCTCCCCGCGACCAAACCCCAGGCGGAGCTCCTGGGCGAGCAGTTCTGCCTCCCGCTGGCCTCGTGC
GA------------------------------------------------------------------------------
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---CGGCCTCCTCCTGCTCGGGACGGCCGTCGCCGGCCAGTACCTCGTCTCCAACCCCACCACGCGGCAGTGGGCCGAGC
TCCCGCGGCTGCGCCGCCAACACATTGAGGACGGCGGCCGGTCGCTGGAGTCCTTGCATACCTCCGCGTACCAAGAGTCC
GGGTTCTACTTCCACGAGCCGTCCAGCGATTACCGGCTTCTGTGTCACGTCACCTTCGAAGAAGGCTTGCCCCCGGCGTA
CTACATCTTCTCGACCGGCGCCGACGAGCCCCGCCAGCTAGACAACGTGAAAGCCGGGAGCATGGGGGACTTCTTTTCCC
CGTCTGGCTGTGACATGATCACCCCGGCGGTTCTCCGCGGGTACCTGCACTGGCTGAGGCACCCCGAGGCCGGTTCGGCC
GGCGAGATGGCGGCGTTCGACACGGCGGACGAGACTTTCCGGCGGATGCCTGCCCCGCCCGTGGCCAACGAGCTCTTGGC
CAGACTGCTCGTCGCGGACGGGTCGCTCATGGCGTCCGAGTTCAGGAAGCTAGCCGTGGACCTGTGGGTGCTCCAGGGTT
ACGCTGGCGCCGCTTCTGCATCCGCGGGAGGGACGAGGTGGGAGCTTCGTCACAGCTTTGAGGTGCCGTGGCAGGCCAGA
ATGCCGACGTCCGCCCTGGTCGTGATCGGCGGCGACGAGGAGGGGGACGTCGTCTTGGGCACCCGCCATGGTGTGGCCGT
GTACAACGTGCGGAGCGGGACGGTCAGGGCCGTCGACGTCGGGCCCAAGGGCTCTAAGGGCTTTAGACTGACGCAGCGCG
CGCTAAGGATACGGGAGAGTTTGGTGCGGCACACGTTTTTCGAGACGCAGCGGCATCCCGGCATTCCATCGTTGTATTGG
CGGTTTTGTTCTTGTTAAGTCGCTTCAGATTTTTCAGATTGCTCGATCCATGAAGACTTAGGAATTG-------------
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----------------------TTTGCTTGAGTTAAGA-----GCATCTCTTATCAGATCTTCGGAAATCTCAACTTCTT
GTATTGGCATTTTGGGGAGTTCAACCTTTGCTAACCCAATACTTACAACTCCTAGATTTGAGTAAGAAACACCCATTCTC
TTCAAATTCGACGCTAGCATTTCTTGATCTTTCATTAGCAAATAGAGCCTTGGCTT-AGTAGTAAGGCATGCGATTGTGC
AGCCGGACCACATGGGTTCAATTTGCAGAATTGACATGTGATATTTATGGGGTTTCCCCATTCTATTTCGTTGAGGATCA
AGCTTGATGCATGGTGAGGCCTTCTATGTAAGGCATGCAATTGTGCAGCCGGACCACACGGGTTCAATTTGCAGAATTGA
CGTGTGATGCTTATAGGGTTTCCCCATTCTATTTCCTCGAGGACTAAGCTTGGTGCATGGTGAGGCCTTCTATTAAGCTA
AAAATCATGGTACTTATGACATGGTGCTTTATCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GGGGTTTATTAGACTACTTGACCAAATAAAAATCTAGCCTTTTCCCAATTTTAGTTCTTGGCAGATTTTAGCAACTTAGC
ACAGGTCAAGCAATCAACCTACACATGCAATTCTAAGAGTATAGCAGTGGAATGTAAAACAATTGCATACGAAGGTAAAG
GGAGGAGTTTGAGGGAGCA
>chr7A_296
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-------------------------------------------------------GCATTGATACAACAACTTCAATAGG
GAAGGTCATCTTTTTACATTGTTATCGTGTTGCTAATTCGGTAGCTCATGAGCTAGCTAAATTCAGTTTTTGTAATAAGA
GTGATGATAATTGGACTATGAACCTTCGGGTTTTCTTATCAGCCAATTAGTAAACGATGTAATTATCTTGTGATTTTATA
AAGCTAGCCATGCTGGCCTCGGCTTGTCGCTGAAATGACCGAGCATAAATGAAAGACCCCGGAACCGAAATTTATCAAAT
TAAACGTAGATGCTTCCTACCATGCAGAGGAGGGATCCGGGGCGACAGGTGCTGTCCTACGGGACGATAAAGGCCGTTTT
ATTGCTGCTCAATGTAGATTCATTCCGGTGGCAGCTGATGTATCGACAGTTGAGGCCATGGCAATGCGAGATGGTTTAAA
CTTGGCAAACAATTTGGGATTTAACAGAATTGAAGCGGAATCTGATTCTTTGAGTGTGGTGAATTATTGCCAGGGGCAAA
ATCAATAGTGGGATGCAGCAGCTGCAATATTTGCAGAATGCATTGATACAACAACTTCAATAGGGAAGGTCCTCTTTTTA
CATTGTTATCGTGATGCTAATTCGGTAGCTCATGAGCTAGCTAAATTCAGTTTTTGTAATAAGAGTGATGATAATTGGAC
TAATGAACCTCTGGGTTTTCTTATCAGCCAATTAGTAAACGATGTAATTATCTTGTGATTTTATAAAGCTAGCCATGATG
CCCCCCCCCCTC--------------------------------------------------------------------
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>chr2B_810
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----------------------------------------------------------------------TTGCTAGATA
TCTATCGTTCGTCCAATAACATTTTTCGAAGACAAAAAGACGTGTATGGCTGCGTTTCAATGTTTGTATCTATATATCCA
AACTCGTGAATAATAGCCATGGATGGTATGAGAGTTCTATTCAAGAGAGATTCCTCCTTGATTAACTTCTAAGCAC----
-----GAAGCACGGAAAGCGCAGATAATCGATCGACGATGGTGGAGCACTTACTTGATCTTGGCGAAGATCTTATCGCCG
AGATCTTGACCCACCTGCCGACCAGGTCCGTCCTCGTCGCGCGCGCCGTCTGCAACGACTTCCGCCGCGCCGCCACCAGT
GCGGCCTTCCTCCCCGCCCACGCGCGCCGTCG---------CCCGCT---------CGAGATCCTCCTCTACGACAGGAC
GACGGCAAGCCACGTCGACGACTACGCGTACCTGGACGCTCTGTCCGTCTCCGTCCGCCATCCGGGCCGCCCGGTGCGCC
GTCCTCTCGCGCGCCTCCCTGCGACCAAACCCCAGGTGGAGCTCCTGGGCGAGCAGTTCTGCCTCCAGATGACCTCGTGC
GA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---CGGCCTCCTCCTGCTCGGGACGGCCGTCGCCGGCCAGTACTTCGTCTCCAACCCCACCACGCGGCAGTGGGCCGAGC
TCCTGCGCCTGCGCCGCCAACACATTGAGCACGGCGGCTGGTCGCCGGACTCCTTGCATACCTCCGCGTACCAAGAGTCC
GGGTTCTACTTCCACGAGCCGTCCGGCGAGTACCGGCTTCTGTGTCATGTCACGATCGAAGACGGCTTGGCCCCGGCGTA
CTACGTCTTCTCGACCGGCGCCGACGAGCCCCGCCGGCTAGACAACGTGAAAGCCGGGAGCATTGGGGACTTCTTTTCCC
CCACTGGCTGTGACATGATCACCCCGGCGGTTCTCCACGGGCACCTGCACTGGCTGAGGCACCCCGAGGCCGGTTCCGCC
AGCGAGATGGCGGCGTTCGACACGGTGGACGAGACTTTCCGTCGGATGCCTGCCCCGCCCGTGGCCATAGAGCTCTTGGC
CAGACTGATTGTCGCGGACGGGTCGCTCATGGCTTCCAAGTTCAGGAAGCTGGTCGTGGACCTGTAGGTGCTCGAGGGTT
ACACTGGCGCCGACTCTGCATCCGCGGGAGGGAGCAGGTGGGAGCTCCGTCACCGCTTTGATGTGCCGTGGTAGGCCAGA
ATGCCGACATCCCCCTTGGCCGTGGTCAGCGGCGACGAGGAGGGGGATGTCGTCTTGGGCACCCGCCATGGTGTGGCGGT
GTATAACGTGAGGATGGGGACGGTCAGGGCCGTCGACGTCGGGCCTGGGGGCTCTATGAGCGTTATACTGACGCAGCGCG
CGCTAAGGCTACGGGAGAGTTTGATGCGGCACACGTTTTTTGAGACGCGGCGGCATCCGGGCATTCGATTGTTATATTGG
CGGTATTGTTCTTGTTAAGTTGCTTCAGATTTTTCAGATTGCTCGATCCATGAAGACTTAGGAATTG-------------
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----------------------TTGC------TTGAGTTAAGGGCATCTCTTATCGAATTTT-AGAAATCTCAACTTCTT
GTATTAGCATTTTGGGGAGTTCAACCTTTGCTAACCCAATACTTACAACTCCTAGATT-GAGTAAGAAACACCCATTCTC
TTCATATTCGAT----GCATTTCTCGTTCTTTCATTCGCAAATAGAGCCTTGGC-T-AGTAGTAAGGCATGCGATTGTGT
AGTCGGACCACACGGGTTCAATTTGCAGAATTGACATGTGATACTTATCGGATTTCCCCATTCTATTTCGTTGAGGGCCA
AGCTTGACGCATGGTGATGCCTTCTATGTAAGGCATGCAATTATGCAGCCGGATCACACAGGTTTAATTTGCAGAATTGA
CGTGTGATGCTTATGGAGTTTCCCCATTCTATTTCCTTGAGGATCAAGCTTGGTGCATAGTGAAGCCTTCTATTAGGCTA
AAAATCTTTGTACTTATGACATGGTGCTTCATCTC---------------------------------------------
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>chr3B_813
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-------------------------------------------------------------------------CTAGACA
TCTAATGTTCGTCCAATAACGTTTTTCGAAGACAAAAAGACGTGTATGCCTGCGTTTCAATGTTTGTATC--TATATCCA
AACTCGTGAATAATAGCCATGG----TATGGGAGTTCGATTCAAGACAGATTCCTCCTTGATTATTAACTTCTATATAAG
CACGAGAAGCACGGAAAGCGCAGATCATCGTTCGATGATGGTGGAGCACCTCCTTGATCTTGGCGAAGATCTTATCGTTG
AGATCTTGACCCACCTGCCGACCAGGTCCGTCCTCGTCGCGCGCGCCGTCTGCATCGACTTCCGCCGCGTCGCCACCAGC
GCGGCCTTCCTCGCCGCCCACGCGCGCCGTCG---------CCCGCTGGCCCCGCTCGAGATCCTCCTCTACGACAGAAC
GACGACAGGCCACGTCGACGACTACGTGTACCTGGACGCTCTGTCCGTCTCCGTCCGCCATCCGGGCCGCCCGGTGCGCC
GTCCGCTCGCGCGCCTCCCCGCGACCAAACCCCAGGCGGAGCTCCTGGGTGAGCAGTTCTGCCTCCCGCTGGCCTCGTGC
GA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---CGGCCTCCTCCTGCTCGGGACGGCCGTCGCCGGCCAGTACCTCGTCTCCAACCCCACCACGCGGCAGTGGGCCGAGC
TCCCGCGGCTGCGCCGCCCACACATTGAGGACGGCGGCCGGTCGCTGGAGTCCTTGCATACCTCCGCGTACCAAGAGTCC
GGATTCTACTTCCACGAGCCGTCCAGCGAGTACCGGCTTCTGTGTCACGTCACGATCCAAGAAGGCTTGCCCCCGGCGTA
CTACATCTTCTCGACCGGCGCCGACGAGCCCCGCCGGCTAGACAACGTGAAAGCCGGGAGCATCGGGGACTTCTTTTCCC
CTTCTGGCTGTGACATGATAACCCCGGCGGTTCTCCGCGGGCACCTGCACTGGCTGAGGCACCCCGAGGCCGGTTCGGCC
GGCGAGATGGCGGCGTTCGACACGGCGGACGAGACTTTCCGGCGGATGCCTGCCCCGCCCGTGGCCAACGAGCTCTTGGC
CAGACTGCTCGTCGCGGACGGGTCGCTCATGGCGTCCGAGTTCAGGAAGCTAGCCGTGGACCTGTGGGTGCTCGAGGGTT
ACGCTGGCGCCGCTTCTGCATCCGCGGGAGGGACGAGGTGGGAGCTTCGTCACAGCTTTGAGGTGCCGTGGCAGGCCAGA
ATGCCGACGTCCGCCCTGGTCGTGATCGGCGGCGACGAGGAGGGGGACGTCGTCTTGGGCACCCGCCATGGTGTGGCGGT
GTACGACGTCCGGAGCAGGACGGTCAGGGCCGTCGACGTCGGGCCCGGGGGCTCTAAGGGTGTTAGACTGACGCAGCGCG
CGCTAAGGATACGGGAGAGTTTGGTGCGGCACACGTTTTTCGAGACGCAACGGCATCCCGGCATTCCATCGTTGTATTGG
CGGTTTTGTTCTTGTTAAGTCGCTTCAGATTTTTCAGATTGCTCGATCCATGAAGACTTAGGAATTG-------------
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----------------------TTTCCTTGAGTTAAGTTAAGGGCATCTCTTATCGGATCTTCAGAAATCTCAACTTTTT
GTATTGGCATTTTGGGGAGTTCAACCTTTGCTAACCCAATACTTACAACTTCTAGATTTGAGTAAGAAACACCCGTTCTC
TTCAAATTCGACGCTAGCATTTCTTGTTCTTTCATTAGCAAATAGAGCCTTGGC-TCAGTAGTAAGGCATGCGATTGTGC
AGCCGGACCACACGGGTTCAATTTGCAGAATTGACATGTGATACTTATGGAATTTCCCCATTCTATTTCGTTGAGGACCA
AGCTTGATGCATGATGAGGCCTTCTATGTAAGGCATGCAATTATGCAACCGGACCACGCGGGTTCAATTTGCAGAATTGG
TGTGTGATGCTTATGGGGTTTCCCCATTCTATTTCCTCGAGGACCAAGCTTGGTGCATGGTGAGGCCTTCTATTAAGCTA
AAAATCTTGGTACTTGTGACATGGTGCTTTATCTCT--------------------------------------------
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>chr3A_813
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-------------------------------------------------------------------------CTAGACA
TCTAACGTTCGTTCAATAACATTTTTCGAAGACAAAAAAACGTGTATGCCTGCGTTTCAATGTTTGTATC--TATATCCA
AACTCGTGAATAATAGCCATGG----TATGAGAGTTCGATTCAAGACAGATTCCTCCTTGATTATTAACTTCTATATAAG
CACGAGAAGCACGGAAAGCGCAGATCATCGTTCGATGATGGTGGAGCACCTCCTTGATCTTGGCGAAGATCTTATCGTCG
AGATCTTGACCCACCTGCCGACCAGGTCCGTCCTCGTCGCGCGCGCCGTCTGCATCGACTTCCGCCGCGTCGCCACCAGC
GTGGCCTTCCTCGCCGCCCACGCGCGCCGTCG---------CCCGCTGGCCCCGCTCGAGATCCTCCTCTACGACAGAAC
GACGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCGGCCTCCTCCTGCTCGGGACGGCCGTCGCCGGCCAGTACCTCGTCTCCAACCCCACCACGCGGCAGTGGGCCGAGC
TCCCGCGGCTGCGCCGCCCACACATTGAGGACGGCGGCCGGTCGCTGGAGTCCTTGCATACCTCCGCGTACCAAGAGTCC
GGATTCTACTTCCACGAGCCGTCCAGCGAGTACCAGCTTCTGTGTCACGTCACGATCGAAGAAGGCTTGCCCCCGGCGTA
CTACATCTTCTCGACCGGCGCCGACGAGCCCCGCCGGCTAGACAACGTGAAAGCCGGGAGCATCGGGGACTTCTTTTCCC
CTTCTGGCTGTGACATGATCACCCCGGCGGTTCTCCGCGGGCACCTGCACTGGCTGAGGCACCCCGAGGCCGGTTCGGCC
GGCGAGATGGCGGCGTTCGACGCGGCGGACGAGACTTTCCGGCGGATGCCTGCCCCGCCCGTGGCCAACGAGCTCTTGGC
CAGACTGCTCGTCGCGGACGGGTCACTCATGGCGTCCGAGTTCAGGAAGCTAGCCGTGGACCTGTGGGTGCTCGAGGGTT
ACGCTGGCGCCGCTTCTGCATCCGCGGGAGGGACGAGGTGGGAGCTTCGTCACAGCTTTGAGGTGCCGTGGCAGGCCAGA
ATGCCGACGTCCGCCCTGGTCGTGATCGGCGGCGACGAGGAGGGGGACGTTGTCTTGGGCACCCGCCATGGTGTGGCGGT
GTACGACGTCCGGAGCAGGACGGTCAGGGCCGTCGACGTCGGGCCCGGGGGCTCTAAGGGCATTAGACTGACGCAGCGCG
CGCTAAGGATACGGGAGAGTTTGGTGCGGCACACGTTTTTCGAGACGCAACGGCATCCCGGCATTCCATCGTTGTATTGG
CGGTTTTGATCTTGTTAAGTCGCTTCAGATTTTTCAGATTGCTCGATCCATGAAGACTTAGGGCATCTCCAGCCGTTGCC
CCTCAGGGGGCGTTTAAAAGCGCCGCCTAGGGGTGAGCCGATGCAAAAAATGACCCTGGAGGCGAGTCGGTCCCCAGCTG
TCGGCCCCTAGGGCCGTCTCCAGTCGCGTATTAAAAAAAAACCGTTCGGCGAAGTTATGATAAAAACTAGTTAAATTTGG
GCCAAACATAGCAAATTTCGGCGAAATTCGGCCAAACATTACATTAACCTAATCTAAAAAAAAGAAAGGGGCTGAAGTCG
TCGCCGCCGTCGCCGCCATCGTCGTCGTCGGCCTTCTCCTCCTTGACGCGGGTGCCCCTGCTGGACCCCTGCCCGGCATC
GCCATGGCGAACAGGCGGTGGCGCGTCGTCGTCGTCGTCGCTGTCGCATAAATCGACGACCCCGCCTTCCTCGCGGCCGC
GTCGGCGCTCCTCGAAGCGGCGTAGGGCGGCGCACTGGCGCTCCTTCTCCTTCTCGCGGCGCGCCTTCTCCATCGCAATG
GAGTCCTGGCGCGCCCATTCGAGGGCCGCGTCGTCGTCGTCGAACTCCGCCTTCACCGGAGCCAGCCCCGGCTCCGCCTT
CACCGGCGCCAGCCCCGGCTCCGTCTTTGGCTTGACGAAGCGCGGAGGAGCCGGCGAGGAGGAGGCGCGCCGGCCGCCCT
CGTTGATGACGATGCCGGCACTGCGAGTGCGCCGGCCGAGCGGCGTCTCCGCCGCGGGCTCGGCCTTGACGCCGAGCAGC
GCCGGAGAGCCGGAGGAGTGTGAAGAAGAGTGGGAGGAGGAGGAAGAAGAGGAGGCGCTGGGGGGTATGCCAACGGCGGT
TCGTTGCCGCCCTCGAGGTACATGAGCACGCCCTCGAGTGTGCGGCCGGGGACGCCCCACCAGAGTTGGCGCCCCTCGCT
GTTCTGCCGGCTGCCGACCACCGGCGCGCCGTTGGTGGACGCCAAGCGCTGCTGCTGGCGGCGCTCAAAATACGCCGCCC
AGGCCGCGTGGTTGTCGGCGGCGTACTGGGGGAGGGAGAGTTCGGTGTCGGTGAGGGACACGCGCACGATCTCGACCTCC
TCGGCGAAGTACTTCGGCTTCGCCACGGCGTCGGGCAACGGGGGAATGGGCACTCCCCCGGCGCTGAGTCTCCACCCCGT
TGGCCCGGCGCGCATGTCCGGCGGCGCTGGGATGTTCGCCTGGAACAGGAGCCAGGACTCCTGTTCGCGGAGCGAACGGC
GGCGAAGCCGTTGGCCGCCGCCTCGTCTCCGGGGAACCGTTCTGCCATGGCGACGACGGGGCTGGGCGGGCTCGGGAGAG
GTAGAGGGAGGGGCTGGGCGGCGGCGCTCGGGAGAGGTACGGAGAGGAAGGGGCTGGACGGCGGCGAGGGGCGGGGCTGG
TGTGGGCACAAGCGAGTGGAGGCCGCCGGCTTTTATAGCCGGGCCGCGCCCGTGTGTACGCGTGCGAGGGAGGGGAGGCG
TCGGCACGCCGTCCCTTGACGCGCCGCCCGTGAGGAATCAATGGCAAGGCTGACCGGCAGCAGCCTTGCCATTGATTCCC
CGCGGGAACCGAGGCCGTTGGGGGAAGACGAGGCGCCGAGTCGCTGACGCGGCTGGCCCGCGTCTTTTTCGCGCCAAAAC
AGGTCGCCCCGGCGCCCCCAGCGCGCCGGGTTCGATCTGGGTCCGCCGGCGCAGTTTTCGGCTCAAGCCAGCGAAAATCG
GGCTCCTGGGGGCGCGACTGGGCCGTATTTTCGACGCCGACGCGAAAAAATCGCCTGGGGAGGCCTTCCTGGGGCGCGGC
TGGAGATGCCCTTAGGAATTGTTTCC------TTGAGTTAAGGGCATCTTTTATCGGATCTTCGAAAATCTCAACTTCTT
GTATTGGCATTTTGGGGAGTTAAACCTTTGCTAACCCAA-----------------------------------------
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>chr3D_1929
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---------------CTGCATCCGCGGGAGGGACGAGGTGGGAGCTTCGTCACAGCTTTGAGGTGCCGTGGTAGGCCAGA
ATGCCGACGTCCGCCCTGGTCGTGATCGGCGGCGACGAGGAGGGGGACGTCGTCTTGGGCACCGGCCATGGTGTGGCAGT
GTACGATGTCCGGAGCAGGACGGTCAGGGCCGTCGACATCGGGCCCGAGGGCTCTAAGGGCGTTAGACTGATGCAGCGCG
CGCTAAGGATACGGGAGAGTTTGGTGCGGCACACGTTTTTCGAGACGCAATGGCATCCCGGCATTCCATCGTTGTATAGG
CGGTTTTGTTCTTGTTAAGTCGCTTCAGATTTTTCAGATTGCTCGATCCATGAAGACTTAGGAATTG-------------
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----------------------TTTCCTTGAGT-----TAAGGGCATCTCTTATCGGATCTTCGGAAATCTCAACTTTTT
GTATTGGCATTTTGGGGAGTTCAACCTTTGCTAACCCAATACTTACAACTCCTAGATTTGAGTAAGAAACACCCGTTCTC
TTCAAATCCGACGCTAGCATTTCTTGTTCTTTCATTAGCAAATAGAGCCTTGGC-TCAGTAGTAAGGCATGAGATTGTGC
AGCCGGACCACATGGATTCAATTTGCAGAATAGACATGTGATACTTATGGGGTTTCCCCATTCTA-TTCGTTGAGGACCA
AGCTTGATGCATGGTGAGGCATTCTATGTAAGGCATGCAATTATGCAGCCGGACCAGGCGGGTTCAATTTGCAGAATTGG
CGTGTGATGCTTATGGGG-TTCCCCATTCTATTTCCTCGAGGACCAAGCTTGGTGCATGGTGAGGCCTTCTATTAAGCTA
AAAATCTTGGTACTTGTGACATGGTGCTTTATCTCT--------------------------------------------
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-------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-------------
---------------SSS--------------------------------------------------------------
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-----------------------------------------------S--------------------------------
-----------S------S-----------------S--------------S---------S------------------
S--SSS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-
S----S-------------S-----S--S---S------S---------S------------------------------
----------S------------------S--------------------------------------------------
-----------------------------S------S-------------------------------------------
-S---------S----------S-----------------------------------------------S---------
--------------------------------SSSSSSSSS---------------------------------------
--------------------------------------------------------------------------S-----
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-----------------------------S-----------------------SS-------------------------
-----------------------------------S---------------------------S----------------
-S---------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
----------------------------------------------S--------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S-----------S-----------------S------------------------
--------------------------------------------------------------------------------
--------------------------S---------------------------S-------------------------
-------------------------------------------S---------------------------------S--
------------------------------------------S-------------------------------------
--------------S-----------------------------S-----------------------------------
------S-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS
>forward_254
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------ACCGCA
TCCCCTTTTGTCAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------
>reverse_2270
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TTACCGGCTTCTGTGTCACG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>forward_1278
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TCCAGGTCTCTTGGGAGGAG--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------
>reverse_2295
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TTCGAAGAAGGCTTGCCCC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------
>forward_1287
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CTTGGGAGGAGGC
TTTAGGC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------
>reverse_5245
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TAAGCTTGGTGCATGGTGAGG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
