>input_sequence_56309
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---------------ATGGCCGCCGC---CGCGTTGGGTGACGTTGATGATCTCGACTTCGACCTGGGTTTTATCGACGG
GCTCGAGTGCTTCGACTTCGAGTTCGACCTGCCGGACATGGGCCTCACCGAGTTGTGCCACGGCGGCGACGGCGAGTGCT
TGCTGCCCGCCGTGGCCGATAAGGAGGGCGGTTTGGGTTTGGATCTGGGTTCTCGTGATGGTGG------CGACGGCGGG
AGAGAGAGCTCGCCGGACTCCGTGGTGACGGACGACGGCGCGCCGCCTCTGTCGTTAGAGTCGTCTGGGGATCGCGACGA
TGGCGAGATGTCGGCCTACGTGGGCGACCTGGAGAGGTTCCTCATGGAGAGCGAGGATGACGCCGAGGCCGGCGGGCCGT
TCGCGGCCAAGGGGCTTGCCGCCAACGACCACTTGTTCGACGATCTCGCTGTTGCGGACGACGGTTACGTCGAGCCGTCC
ACTGCAGCGGAAGAGTTTGCCGCCGCCGGCTACTACTACTTCGGTGATCTCGACGACGGTTACGCGGAGCCGGCGACTCC
AGGGAAGGATCTCGTCCTCGACGACTACTTGTTCGGCGATCCCGTTGTTGCGGGCGACGGTTACATCGAGCCGTACACTG
CAGGGGAGGATCTGGTCTCCGACGACTACTTCTACGATGTTGCTGCT---------------------------------
------GTGGACGATGCTGCTC---------------------------GC---------G------AGGACGACGACGA
AGCGACCTCGAGGAAGCGTGCAAGGTACGAATGAATTGAATCGAGTTTTCATTCATTCATTCATTCCGTGCTAATTGCAA
ATTTAGATCTTTTATCTTCCTGGGCCATCGTAATTGGCAGAAATGGAACAAACAACATGTACATAATTGGCAGT------
-----AGATGAAGAAATTTCGTTTTACGAAAAA-ATTGATGTAGAAATTAACTCAAATATTGCACTATTATTACTTG--G
CAGTTTGATCTTTC-TTTTTTCTGAAAGTGCTTGATCATCTTTGTCATGTGCGCTGCGTATATTGCACTATTATTACTTG
CAGTTTACTCTGTTTCCCCTTTCTT----TACATGAGAAGGATTATTTGCAACGAATTTCAATTTGATGAAACTTGTTGC
TGATATTTCCGGTGCTGCCTCAGGCAGAGGAAGGGCGCCGCTGCGGTGCCACGTGAAGCAGAGCTCCGGGGAACGCCGGT
GATGCATGCCATCTCGTCGATCTCGACTGGAAACGGGTGCCGCCCCATTGGTCACCATTGGCTGCATCCCTGCGCCACAG
TGTGCCTATTGGCCTGA---------------------------------------------------------------
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>chr2B_1_TraesCS2B01G515200
ACAACTACCACAGATGGTGACTAGAGGTTCACCGGTAGTGTAGACCACGCCTGCTCAAAAGACTTGGCTACCACCCCCGG
GCAACTTGTTGAAGATCAATGTTGACGGGGCTGTGGAACGACACAGGCGAGGTGGAGCAGTGGCAGCAGTTTGCCGAGAC
CATACTGGGGCGTACATAGGATCGTCAGTCATGGTGTACCGGGCAGTTACTGATCCTATGATGCTAGAAACTTTTGCGTG
CAGGGAAGGCCTGACCCTAGCAGATGATCTAAACATTCAAAGCCTGGTGCTGGCGTCGGACTGCAAGAGCGTCGTGAATG
ATATCAATTCTGGCACGGGAGGACACCACTCGGCGGTTATCCATGAGATACAAGAGCGTAGAGACAACTTTCTTCTATGT
AATTGTG--CACGAGCCTAGGAATCATAACTTTGAAGCTCATAATCTCGCTAAAATGGCTTGTAAGCTAGGTCTAGGACG
ACATGTTTGGCTGGGCAGT-CCCATGATCCAAGTCGTGTACCTATAAACATCACTATTCAATGAAGTGGCGAGGTTCTCT
CTCTCTCAAAAAAAGTTGGAACTCGTGCCTCTCCGCGGTACCGCGTCACGTAGGAAATCCAGAAACCCCCAGAGGAACAC
GCAAGTACGTACGCATCTCGATCGATCGGCACCGTCGACGCACCAGATCAAATCAATCTACACCGCCCACCACTTAACCC
CATCCAAACCGCCAC---GAGAAGAGTCAAT-TCCCCACGGCGCGCTCTCCCCTCCTCGTAGCTGATCGGGACGTGCGTG
CGTG----CGTCGGTTCCTCCCGCAGCGGCCGGAAGGAAAGGAAACTTCCCGGATACGGCGCCCGTGGCCCGGCCGAACC
TTCCGCGGTAAGGAACCGACTCCGGCCACGTCTCCTCCGTCCC--GCCCGCTCCCATATAAAG-CCCACCTCCCCTGGTC
GACGTCCTCACAATAT---GATTTCAAAAAACTCCCATCGA--------------------------------------C
GTGCGAACTCGCGCCATGGCCGCCGC---CGCGTTGGGTGACGTTGATGATCTCGACTTCGACCTGGGTTTTATCGACGG
GCTCGAGTGCTTCGACTTCGAGTTCGACCTGCCGGACATGGGCCTCACCGAGTTGTGCCACGGCGGCGACGGCGAGTGCT
TGCTGCCCGCCGTGGCCGATAAGGAGGGCGGTTTGGGTTTGGATCTGGGTTCTCGTGATGGTGG------CGACGGCGGG
AGAGAGAGCTCGCCGGACTCCGTGGTGACGGACGACGGCGCGCCGCCTCTGTCGTTAGAGTCGTCTGGGGATCGCGACGA
TGGCGAGATGTCGGCCTACGTGGGCGACCTGGAGAGGTTCCTCATGGAGAGCGAGGATGACGCCGAGGCCGGCGGGCCGT
TCGCGGCCAAGGGGCTTGCCGCCAACGACCACTTGTTCGACGATCTCGCTGTTGCGGACGACGGTTACGTCGAGCCGTCC
ACTGCAGCGGAAGAGTTTGCCGCCGCCGGCTACTACTACTTCGGTGATCTCGACGACGGTTACGCGGAGCCGGCGACTCC
AGGGAAGGATCTCGTCCTCGACGACTACTTGTTCGGCGATCCCGTTGTTGCGGGCGACGGTTACATCGAGCCGTACACTG
CAGGGGAGGATCTGGTCTCCGACGACTACTTCTACGATGTTGCTGCT---------------------------------
------GTGGACGATGCTGCTC---------------------------GC---------G------AGGACGACGACGA
AGCGACCTCGAGGAAGCGTGCAAGGTACGAATGAATTGAATCGAGTTTTCATTCATTCATTCATTCCGTGCTAATTGCAA
ATTTAGATCTTTTATCTTCCTGGGCCATCGTAATTGGCAGAAATGGAACAAACAACATGTACATAATTGGCAGT------
-----AGATGAAGAAATTTCGTTTTACGAAAAA-ATTGATGTAGAAATTAACTCAAATATTGCACTATTATTACTTG--G
CAGTTTGATCTTTC-TTTTTTCTGAAAGTGCTTGATCATCTTTGTCATGTGCGCTGCGTATATTGCACTATTATTACTTG
CAGTTTACTCTGTTTCCCCTTTCTT----TACATGAGAAGGATTATTTGCAACGAATTTCAATTTGATGAAACTTGTTGC
TGATATTTCCGGTGCTGCCTCAGGCAGAGGAAGGGCGCCGCTGCGGTGCCACGTGAAGCAGAGCTCCGGGGAACGCCGGT
GATGCATGCCATCTCGTCGATCTCGACTGGAAACGGGTGCCGCCCCATTGGTCACCATTGGCTGCATCCCTGCGCCACAG
TGTGCCTATTGGCCTGATCAATC-ATCGATCAACCTGCAGTTCCGGTCGGTCTGGGAGAAAGATCGCGACGGCGCATGCC
TCAGGTATTCGAACCGGTAGGTGAAAATTTCAGAGGAA------C------ATTTCCGCGTGTT-CTTCTATGATATTTT
CTGCCTTTCACACCAACCCGGCCATTGGACGATTATA--AAGTCATGGGACGAACTATAAACAA---------CACATAC
TCCTCTGTTCGGAGTAGAAAAGTTTGGTAGCAACTCTCGAACAACACGTTTTCAAAAAGAAAAGTAAGCTTAGTTTTATA
ATGTAC------ACCTAATATTCCTCTTCTTGT--ACACATACATCCCGTGCGCATTCCGGATGTTGGTAGCATAATTCG
TTGAGTATCTGCCTGGTACAGCCATTTCATCACCAGTGCTAATCAACCATGCAAACATGTTTGATCCTTAGTAGTTTCTA
CCACTACCAGTAAAGAGCTTAGTGGTTGATATACATTTAGAAGTAC----------------------------------
--------------------------------------------------------------------------------
---------------------------AAGAAACCTTCTACCAGGTAGAGCATGTCAGATTTTTGTTCTCGACCGTCCAG
AATTTTTTTTCTCTGAAAATCGAGTGAGCACCACAAATCGTCCAGGCTTGCGTTCATTCAGTATGGGCCGCTTATAATCT
TGCTCGTACTGCTACCAGTTAAGGCTTACTGATTGTTGTACGTTTAGAATTAAAAGAAACTGCAAAATACAACACTGGTG
CTTGAACTTGTCACGAATGTGCACTTTAGTGCCTGAACTTGCAAAATACATTGAACTGGTTTCACAACTTAGCATGGACG
TGCATATACGGTTCAAATCTTGTTTTTATACGTCCATGGCGCTGACGAGGCACGCCAGGATGTAAGAGAAAAGGCATGTG
GCCTGTTTTTTTTTTGCAGAAAACCCTCTAGAATATTTTTTTTCTTACAAAAGGCCCTCAAAGAGAAACTGATAAATTAA
AAAAATCTATTAATATATTAATAATTAAAACTGGTCCGGGTTTTGAACCACACGCGCAGGTGTGCATGGTT
>chr2B_2
-CAATTACCACAGATGGTGACTAGAGGCTCATCCGCATTGTGGACCGCGCCTGCTCAAAACACCTGGCTACCTTA-TCCC
GCAACTTGTTGAAGATCAACATCGATGGTGCTGTGGAACGACACAGGCGAGGTGGAGCAGCGGCAGCAGTTTGCCGAGAC
CATACTGGGGCGTACATGGGATCCTCGGTCATGGTGTACCGGGGAGTTATTGATCCAGTGATGCTAGAAACTTTTGCATG
CAGGGAAGAACTGGCCCTAGCAGATGATCTGAATATCCAGAGGATGATGCTGGCGTCGGACTACTAGAGTGTTGTTAACG
ATATCAATTTTGGTACAGGAGGCCACCACTCGGCAATCATCCATGAAATACAAGATCGTAGAGACAATTTCATTTTATGT
ATTTTTGTGCATGAGTCTAGGAATCATAACTTTGAAACTCATAATCTCGCCAT-----------------GTTTAGGTCG
ACATGTTTGGCTGGGCAGT-CCCATGACCCAAGTCATGTACCTATAACATTACAACTCA---------------------
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>chr1A_2
-CAACTACCGCTGATGGTGACTGGAGGTTCGCCGGTAGTGCCGACCACGCCTGCTCAAAAGACTTGGCTACCACCCTCGG
GCAACTCAATGAAGATCAATGTTGAAGGGGCTATGGAACGACACAAGCGAGGTGGAGTAGTGGCAGCAGTTT-CCGAGAG
CATACTGGGGCGTACTTGGGATCGTTAGCCATGGTGTACCAGGGTGTCACTGATCCTGTGATGCTAGAAACTTTTGCATG
CAGGGAAGGCCTGGCCTTAGCTGATGATCTGAACATTCAAACCTTGCTGCTGGCGTCGGACTGCAAGGGTGTTGTAAATG
ATATTAATTCTGGCACGGGAGGACACCACTCGGCGATTATCCATGAGATACAAGAGCGTAGAGACAATTTCTTTTTATGT
AATTTTGTGCACGAGTCTAGGAATCATAACTTTGAGGCTCATAACCTCGCCAAAATGGCTTGTAAGCTACATTTAGGACA
ACATGTTTGGCTGGGCAGTCCCCATGACCCAAGTCGTGTACCTATGAACATCAATATTCAATAAAGTGGCGAGGTTC---
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>chr2D_561
TCTCAT--------------------------------------------------------------------------
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-----------AAAATTCGAATTCGTATCCCCCCGCGGTACCGCGAGACGTAGGAAATCCAGAAACCTCCATAGAAACAC
GCAAGC----ACGCATCTCGATCGATCGGCACCGTCGACGCACCAGACTCAATCAATCCACACCGCTCACGAGTCCACCA
CATCCAAACCGCCATGATGAGAAGAGTCAAT-TCCCCACGTCACGCTTTCCCCTCTCGATCGGGA-----------CGTG
CGTG----CGTCGGTTCCTCCCGCAGCGGCCGGAAGGAAA-----CTTCCCGGATACGGCGCCCGCGGCCCGGCCGAACC
TTCCGCGGTAAGGAACCGACTCGGGCCACGTCTCCTCCGTCCC--TCCCGCTCCCATATAAAC-CACCCCTCCCCTGGTC
GACGTCCTCACAATCT---GATTTCAAAAA------------------------------------CTTCGTCGACGTGC
GTGCGTACTTGCGCCATGGACGCCGT---CGTGTTGGGTGACGTTGATGATCTCGACTTCGACTTGGGTTTTATGGACGG
G---------------TTCGAGTTCGACCTGCTGGACATGGACCTCACCGAGTTCTG---CCACGGCGACGGCGAGTGCT
TGCTGCCTGCCGTGGCCGATAAGGATGGCGGTTTGGGTTTGGATTTAGGTTCTGATGACGGTGG------CGAAGGGGGG
AGGGAGAGCTCGCCGGACTCCGTGGTGACGGACGACGGCGCGCCGCCTCTGTCGTTAGAGCCGTCTGGGGATCGCGACGA
TGGCGAGATGTCGGCCTACGTGGGCGACCTGGAGAGGTTCCTCATGGAGAGCGAGGATGACGCGGAGGCCGGCGGGCCGT
TCGCGGCCAAGGGGCTTGCCGCCAACGACCACTTGTTCGACGATCTCGCTGTTGCGGACGGCGGTTACGTCCAGCCGTCG
ACTGCAGCGGAGGAGTTTGCCGCCGCGG---ACTACTTCTTGGGTGATCTCGACGACGGTTACGCTGAGCCGGCGACTCC
AGGGAAGGATCTCGTCCTCGACGACTACTTCTTCGGCGATCTC-------------------------------------
--------------GTCTCGTACGACTACTTATACGATCCTGCTGTTGCGAGCGATGGCTGCGTCGAGCCCGCGGCCGTT
GCCAGCGTGGACGATGCTGCATCATCGGCGACGGAGGAGGAGGATGCTGGC---------GAGTACTACGACGACGACGA
AGCGACCTCGAGGAAGCGCGCAAGGTATGAATGAATTGAATCTAGTTTTCATTCATTCATTC----TGTGCTAATTGCAA
GTTTAGATCTTTTATCTTCCTAGGCCCTGGTAATCGGCAGAAATGGAACAAACAACCTGTACATAATTGGCAGTTAGTAT
TAGCTAGGTGAAGAAATTTCGTTTCACGAAAAA-ATTGATGTAGAAATTAACTCGAATATTGCACTATTATTACTACTTG
CAGTTTGATCTTTC--TTTTTCTGAAAGTGCTTGATCATCTTTGTCATGTGCGCTGCGTATATTGCACTATTATTACTTG
CAGTTTACTCTGTTTCCCCTTTCTTTACATACATGAGAGGGATTATTTGCAACGAATTTCAATTTGATGAAACTTGTTGC
TGATATTTCCGGTGCTGCCTCAGGCAGAGGAAGGGCGGCGCTGCGGTGCCACGCGAAGCAGAGCTCCGGGAAACGCCGGT
GATGCATGCCATCTGGTCGATCTCGACTGGAAACGGGTGCCGCCCCCTTGGTCACCATTGGCTGCATCCCTGCACCACAG
TGTGCCTGTTGGCCTGATCGATCGATGGATCAACCTGCAGTTACGGCCCGTCTGGGAGAAAGATCGCGACGGCGCCTGCC
TCAGGTATTCGAACCGGTAGGTGAAAAATTCAGAGGAA------C------ATTTCCCCGTGTT-CTTCTATGATATTTT
CTGCCTTTCACACCAACCCGGCCATTGGACGATTATATAAAGTCATGGGACGAACTATAAACAA---------CACATAC
TCCTCTGTTCGGAGTAGAAAATTTTGGTAGCAACTCTCGAACAACACGTTTACAAAAAGAAAAGAAAGCTTAGTTTTATA
ATGTACGAGTACACCTAATATTCCTCTTCTTGT--ACACATACATCCCGTGCGCATTCCGGATGTTAGTAG---------
--------------------------------------------------------------------------------
----------------------------------------AAGTAC----------------------------------
--------------------------------------------------------------------------------
---------------------------AAGAAACCTTCTACTAGGTAGAGCATGTCATATTCTTGTTCTCGACCGTCCAG
AATTTTTTTTCTCTGAAAATCCAGTGAGCGCCACAAATCGTCCAGGCTTGTGTTTATTCAGTGTGGGCCGCTTATAATCT
TGCTCGTACTGCTACCAGTTAAGGCTTATTGATTGGTGTACGTTTAGAATTACAGGAAAC--------------------
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>chr2A_567
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---------AAAAAGTTCGAATTCGTACCTCCCCGCGGGACCGCGTCTCGTAGGAAATCCAGAAACCTCCGGAGAAACAC
GCAAGC----ACGCATCTCGACCGATCGGCACCGTCGACGCACCAGATCAAATCAATCCACACCGCTCATCACTTGGCCA
CCGCCA--------C---GAGAAGAGTCAAACTCCCCACGTCGCGCTTTCCCGTTCCGATCGGGA-----------CGTG
CGTGCGTACGTCGGTTCCTCCCGCAGCGGCCGGAAGGAAAGGAAACTTCCCGGATACGCCGCCCGGGGCCCGGCCGAACC
TTGCGCGGTAAGGAACCGACTCCGGCCACGTCTCCCCCGTCTCCGTCCCGCCCCCATATAAAATCCCCCCTCCCCTGGTC
GACGTCCTCACAATCTTCTGATTTCAAAAACTTCCGGGCGCGCGTTGGCCGGCTCATCGATCGAACCTTCGTCGACGTGC
GTACGTACTCGCGCCATGGCCGCCGCCGCCGCGTTGGGTGGCGTGGATGATCTCGACTTCGACTTGGGTTTTATGGACGG
G---------------TTCGAGTTCGACTTGCTGGACATGGACCTCACCGAGTTCTG---CGGCGGCGACGGCGAGTGCT
TGCTGCCCGCCGTGGCCGATAAGGAGGGCGGTTTCGGTTTGGATCCGGGTTCTCGTGATGGTGG------CGACGGCGGG
AGAGAGAGCTCGCCGGACTCCGTGGTGACGGACGACGGCGCGCCGCCGTCG------GAGTCGCATGGGGATCGCGACGA
CGGCGGGATGTCGACCTACGCGAGCGAGCTGGAGAGGTTCCTCATGGAGGACGACGATGGCGGGGACGCCGGCGGGCCGC
TCGATCTGAAGGAGCCTGCCGCGGAC------------------------------------------------------
---------------------------G---ACTACTTCTTGGGTGATCTCGACGGCCGTTACGCCGAGCCGGCGACTCC
AGGGAAGGATCTCGTCCTCGACGACTACTTCTTGGGCGATCTC-------------------------------------
--------------GTCTCGTACGACTACTTCTACGATCTTGCTGCT---------------------------------
------GCGGACGATGCTGCATCACCGGCGACGGAGGAGGAGGATGATTCTGCTCGCGAGG------ACGACTACTACGA
AGCGACCTCGAGGAAGCGCGCAAGGTACGAATGAATTGAATCGAGTTTTCATTCATTCATTCATTCTGTGCTAATTGCAA
GTTTAGATCTTTCATCTTCCTGGGCCATGGTAATCGGCAGAAATGGGAAAAACAACCTGTACATAATTGGCAGT------
-----AGATGAAGAAATTTCGTTTTACGAAAAAAATTGATGTAGAAATTGACTCGAATATTGCACTATTATTACC---TG
CAGTTTGATCTTTCTTTTTTTCTGAAAGTGCTTGATCATCTTTGTCATGTGCGCTGCGTATATTGCACTATTATTACTT-
-------------TTCCCCTTTCTTTACATACATGAGAAGGATTATTTGCAACGAATTTCAATTTGATGAAACTTGTTGC
TTATATTTCCGGTGCTGCCTCAGGCAGAGGAAGGGCGCCGCTGCGGTGTCACGCGAAGCAGAGCTCCGGGGAGCGCCGGT
GATGCATGGCATCTCGTCGATCTCGACTGGAATCGGGTGCCGGCCCCTTGGTCACCATTGGCTGCATCCCTGCACCACAG
TGTGCCTGTTGGCCTGATCGATC-ATCGATCAACCTGCAGTTACGGTCCGTCTGGGAGAAAG---------GCGCCTGCC
TCAGGTATTCGAACCGGTAGGTGAAAATTTCAGAGGAACACCTGC------ATTTCCCTGTGTT-CTTCTATGATATTTT
CTGCCTTACGCACCAACCCTGCCATTGGACGAC--TA--AAGTCATGGGAGATGGGACGAACCAGGGACTCGGCACAGAC
TCCTCTGTTCGGAGTAGAAAATTTTGGTAGCAACTCTCGAACAACACGTTTTCAAAAGGAAAAGAAAGCTC-GTTTTCTA
ATGCGCTAGTACACCTAATACTCCCCTTCTCGT--ACACACACATCCTGTACACGTTCCGTATACCGGTAG---------
--------------------------------------------------------------------------------
----------------------------------------CACAATTCGTTGACTATCTGCCTAATACAGGACCCATCTC
ATACACATTTCGTATACCGGTAGCATTCCGTATGCCTAATGCTTGATACTTAGTTTCTACCACTACCAGTAAAGAGCTTG
GTGGTTGATGTACGTTTGAAGTACAAGAAGAAACCTTTTACTAGGTAGAGAATGTTAAATTTTTGTTCTCGACCGTCCAG
AATTTTTTTTCTCTGAAAATCCAGTGAGCACCACCAATCGTCCAGGCTTGTGCTTATTCAGTGTGGGCCGCATATAATCT
TAATCGT-------------------------------------------------------------------------
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>chr2B_580
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----------------------TCGTACCTACCCGCACTACCGCGTCACGTAGGAAATCCAGAAACCTCCAGAGAAACTC
CCCATC----ACGCATCTCGATCGATCGGCACCGTCGATGCACCAGATCAAATCAATCCACACCGCTCACCAGTTAGCCA
CACCCAAACCGCCTCTGCATGC---GTCGGT-TCCCCACGTCGCGCTCTCCCCTCCCGATCGGGA-----------CGTG
CGTG----CGTCGGTTCCTCCCGCGGAA---GGAACGAAA-----CTTCGAAGACAGC---------GCCCGGCCGAACC
TTCCGCGGTAAGGAACCGACTCCGGCCACGTCTCCTCCGTCCC--GCCCGCTCCCATATAAAC-CCCCCCTCCCCTGGTC
GACGTCCTCACAATCT---GATTTCAAAATCTTCCGGGCGCGCGTTGCCTGCCTCATCGATCGAACCTCCGTCGACGTGC
GTACGCACTCGCGCCATGGCCGCCGC---CGCGCTGGGTGACGTTGATGACCTCGACTTTGACCTGGGTTTTATGGACGG
GCTCGAGTGCCTCGACTTCGAGTTCGACCTGCCAGACATGGGCCTCACCGAGTTGTGCCACGGCGGCGACGGCGAGTGCT
TGCTGCCCTCCGTGGCCGATAAGGAGGGCGGTTTGGTTTTGGATCTGGGTTCTCATGATGGTGATGGTGCCCAAGGGGGG
AGGGAGAGCTCGCCGGACTCCGTGTTGACGGACGACGGCGCGCCGCCGTCG------GAGTCGGCCGGGTATCGCGAGGT
CGGCGAGATGTCGACATACGCAACCGAGCTGGAGAGGTTCCTCATGGAGGACGAGGATAACGGGGACGCCGGCGGGCCGC
TCCATCCGAAGGAGCTTGCCGCCGAC------------------------------------------------------
---------------------------G---ACTACTTCTTGGGTGATCTCGACGACCGTTACATCGAGCCGGCGACTCC
AGGGAAGGATCTCGTCCTCGACGACGACTACTTCGGCGATCTC-------------------------------------
--------------GTCTCGTACGACTACTTCTACGATCTTGCTGTTGCGGGCGACGGCTGCGTCGAGCCCGCGGCCGGT
GCCAGCGTGGACGCTGCTGCATCACCGGCGACGGAGGAGGAGGATGCTGGC---------G------AGGACGACGACGA
AGCGACCTCGAGGAAGCGTGCAAGGTACGAATGAATTGAATCGAGTTTTCATTCATTCA----TTCTGTGCTAATTGCAA
ATTTAGATCTTTTATCTTCCTGCGCCATGGTAATCGGCAGAAATGGAAGAAACAACCTGTACATAATTGGCAGTTAGTGT
AAGCTAGATGAAGAAATTTCGTTTCACGAAAAA-ATTGATGTAGAAATTAACTCGAATATTGCACTATTATTACTTG---
CAGTTTGATTTTGA--TTTTTCTGAAAGTGCTTGATCATCTTTGTCATTTGCGCTGCGTATATTGCACTATTATTACTTG
CAGTTTACTCTGTTTCCCCTTTCTTTAC--ACATGAGAAGGATTATTTGCAACGAATTTCAATTTGATGAAACTTGTTGC
TGATATTTCCGGTGCTGCCTCAGGCAGAGGAAGGGCGCCGCTGCGGTGCCACGCGAAGCAGAGCTCCGGGAAACGCCGGT
GATGCATGCCATCTCGTCGATCTCGACTGGAAACGGGTGCCGCCCCCTTGGTTACCATTGGCTGCATCCCTGCACCACAG
TGTGCCTGCTGGCCTGATCGATC-ATCGATCAACCTGTTCTGGGAGAAAGATCG---GAACG---------GCGCCTGGC
TCAGGTATTCGAACCGGTAGGTGAAAATTTCAGAGGAA------CACCTGCATTTCCCCATGTTCCTTCTATGATATTTT
CTGCCTTTCACACCAACCCTGCCATTGGACAATTATA--AAGTCACGGGACGAATTAACC-------------CACATAC
TCCTCTCTTCGGAGTAGAAAATTCTGGTGGCAACTCTCGAACAACACGTTTTCAAAAACAAAAAAAATCTC-GTTTTCTA
ATGTACGAGTGCACCTAATACTGCTCTTCTCGTACACACACACATCCCGTACACATTCC---------------------
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>chr2D_617
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-----------------------------------------------------------CAGAAACCTCCATAGAAACAC
GCAAGC----ACGCATCTCGATCGATCGGCACCGTCGACGCACCAGACTCAATCAATCCACACCGCTCACGAGTCCACCA
CATCCAAACCGCCATGATGAGAAGAGTCAAT-TCCCCACGTCACGCTTTCCCCTCTCGATCGGGA-----------CGTG
CGTG----CGTCGGTTCCTCCCGCAGCGGCCGGAAGA-----AAACATCCCGGATACGGCGCCCGCGGCCCGGCCGAACC
TTCCGCGGTAAGGAACCGACTCGGGCCACGTCTCCTCCGTCCC--TCCCGCTCCCATATAAAA-CCCCCCTCCCCTGGTC
GACGTCCTCACAATCT---GATTTCAAAAACTTCCAGGCGCGCG----CCGGCTCATCGATCGAACCTTCGTCGACGTGC
GTACGTACTTGCGCCATGGACGCCGT---CGTGTTGGGTGACGTTGATGATCTCGACTTCGACTTGGGTTTTATGGACGG
GTTCGAGT---------------TCGACCTGCTGGACATGGACCTCACCGAGTTCTGCCACG---GCGACGGCGAGTGCT
TGCTGCCTGCCGTGGCCGATAAGGATGGCGGTTTGGGTTTGGATTTAGGTTCTGATGACGGTGG------CGAAGGGGGG
AGGGAGAGCTCGCCGGACTCCGTGGTGACGGACGACGGCGCGCCGCCTCTGTCGTTAGAGCCGTCTGGGGATCGCGACGA
TGGCGAGATGTCGGCCTACGTGGGCGACCTGGAGAGGTTCCTCATGGAGAGCGAGGATGACGCGGAGGCCGGCGGGCCGT
TCGCGGCCAAGGGGCTTGCCGCCAACGACCACTTGTTCGACGATCTCGCTGTTGCGGACGGCGGTTACGTCCAGCCGTCG
ACTGCAGCGGAGGAGTTTGCCGCCGCGG---ACTACTTCTTGGGTGATCTCGACGACGGTTACGCTGAGCCGGCGACTCC
AGGGAAGGATCTCGTCCTCGACGACTACTTCTTCGGCGATCTC-------------------------------------
--------------GTCTCGTACGACTACTTATACGATCCTGCTGTTGGGAGCGATGGCTGCGTCGAGCCCGCGGCCGTT
GCCAGCGTGGACGATGCTGCATCATCGGCGACGGAGGAGGAGGATGCTGGC---------GAGTACTACGACGACGACGA
AGCGACCTCGAGGAAGCGCGCAAGGTATGAATGAATTGAATCGAGTTTTCATTCATTCA----TTCTGTGCTAATTGCAA
GTTTAGATCTTTTATCTTCCTGGGCCCTGGTAATCGGCAGAAATGGAACAAACAACCTGTACATAATTGGCAGTTAGTAT
TAGCTAGGTGAAGAAATTTCGTTTCACGAAAAA-ATTGATGTAGAAATTAACTCGAATATTGCACTATTATTACTACTTG
CAGTTTGATCTTTC--TTTTTCTGAAAGTGCTTGATCATCTTTGTCATGTGCGCTGCGTATATTGCACTATTATTACTTG
CAGTTTACTCTGTTTCCCCTTTCTTTACATACATGAGAGGGATTATTTGCAACGAATTTCAATTTGATGAAACTTGTTGC
TGATATTTCCGGTGCTGCCTCGGGCAGAGGAAGGGCGGCGCTGCGGTGCCACGCGAAGCAGAGCTCCGGGAAACGCCGGT
GATGCATGCCATCTGGTCGATCTCGACTGGAAACGGGTGCCGCCCCCTTGGTCACCATTGGCTGCATCCCTGCACCACAG
TGTGCCTGTTGGCCTGATCGATCGATGGATCAACCTGCAGTTACGGTCCGTCTGGGAGAAAGATGGCGACGGCGCCTGCC
TCAGGTATTCGAACCGGTAGGTGAAAAATTCAGAGGAA------C------ATTTCCCCGTGTT-CTTCTATGATATTTT
CTGCCTTTCACACCAACCCGGCCATTGGACGATTATA--AAGTCATGGGACGAACTATAAACAA---------CACATAC
TCCTCTGTTCGGAGTAGAAAATTTTGGTAGCAACTCTCGAACAACACGTTTACAAAAAGAAAAGAAAGCTTAGTTTTATA
ATGTACGAGTACACCTAATATTCCTCTTCTTGT--ACACATACATCCCGTGCGCATTCCGGATGTTAGTAG---------
--------------------------------------------------------------------------------
----------------------------------------AAGTAC----------------------------------
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---------------------------AAGAAACCTTCTACTAGGTAGAGCATGTCAGATTCTTGTTCTCGACCGTCCAG
AATTTTTTTTCTCTGAAAATCCAGTGAGCGCCACAAATCGTCCAGGCTTGTGTTTATTCAGTGTGGGCCGCTTATAATCT
TGCTCGTACTGCTACCAGTTAAGGCTTATTGATTGGTGTACGTTTAGAATTACAGGAAAC--------------------
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-----------------------------------------------------------------------
>SNPs
S----------------------------------------S----------------------------------S---
-------------------------S------------------------------------------------------
-----------------S-------------------------S-------------S-------------------S--
-------------S----------------S------------S--S----------------------S--S--S----
-----------------------------------S-------------------------------S--SS--S-----
----S----------S----------------------------------S------------------S--S-------
---------------------------S-------------------------S--------S--------------SSS
SSSSSSSSS--------S---S----S----S-----------------------------------S------S-----
-----SSSSS------------------------------------------------S-------S------------S
----------------------------------------S---------------SSS-S-SSSSSSSSSSSSSS----
-----------------------------------------------------------------S--------------
--------------------------------------------------------------S----S------------
--------------S---------------SS---SSS--S---------------------------------------
-----S--------------------------------------------------------------------S-----
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
------------------------------------------------------------S----------S-------S
-----------S--------------S-SSS------S---S-----------------------S--------------
------------------------------S----------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-----SS-----------------S-----------------------------------------
--------------------SS----------------------------------------------------------
------------------------------------------------------------------S-------------
----------------------------S-----S---------------------S-----------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
----------------------------------------------S--------------------------S------
-------S-----------S----------------------S-----S--------------------------S----
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
---------------------S------------------------------------------S---------------
-----------------------------------------------------------------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
---------------------S----------------------------S---S-------S-----------------
----------------------------S------S----------------S-S-----SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_564
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------AGTGGCGAGGTTCTCT
CTCT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>reverse_1662
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TACATCGAGCCGTACACTG
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>forward_787
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CTCCCCTCCTCGTAGCTGAT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>reverse_1674
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TACACTG
CAGGGGAGGATCT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>forward_788
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------TCCCCTCCTCGTAGCTGATC------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>reverse_2449
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------GGTCTGGGAGAAAGATCGCG------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
