>input_sequence_56235
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-----------------------------------------------ATGGCATCCTCCTCCATTGCGGTCGCAGCTGCT
CTGATCCTCTGCATCCTCGTCAC------------------TCATGCCCATGGTTGCTACGCCAAGCACCACGCGGCTCC
TTCTGCGGCCAACTCCAGCTGGCTTGATGCCAAGGCGACATGGTACGGCGCGCCCCGTGGTGCCGGGCCTGACGACAACG
GCGGCGCGTGCGGGTTCAAGAACGTCAACTTACCACCCTTCTCCTCCATGACCTCCTGCGGCAACCAGCCGCTGTTCAAG
GACGGCAAGGGCTGCGGCTCCTGCTATCAGGTACGATACGACCCACCTTACGCTATCATTAGT----TTACTATACACCT
GCAAGCAATTATGTTACTCCCTCTAATCCATATTAATTATCCCTGATTTGGTACAATTTAATACTGAATCAGCAAAATTT
AATATAGATTGGAGGGAGTACCACTGGAATCTATTTATT-----------------------------------------
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--------------------------------------------------------------------------TTTACA
AACCAATATGTTACCAACACATTGTTTTTTAGCCATCATTATTCACGTGCATGCATTCAGAAATATTCATATAGGATATA
GATC----------TGTTT-ATGTGCAGCCTGTAACATC---------------------------GTGCACTGCAAATG
CAGATAAGGTGCTTAAAGTCGGACCACCCTGCGTGCTCCGGCGTGCCGAAGACGGTGATCATCACAGACATGAACTACTA
CCCGGTCTCCCGCTACCACTTCGACCTCAGTGGCACCGCCTTCGGAGCCATGGCCAAGGACGGCCGCAACGACGAGCTCC
GCCACGCCGGCATTATCAACATGCAGTTCAAGAGGTACCACACC--------CACCTACCGATAATGCCAGTCAGCATCA
TACCCATCTCCTTACCTTATTGAGATCGAGAGCTAGACGATATTGTGTGTTTGTGAGACGACACATACTG--ACACCGGT
GAGTGACATGGCTGCGCAGGGTGCCGTGCCAGTATCCGGGGCTGACGGTGACGTTCCACGTGGAGGAGGGGTCGAACCCG
TTCTACATGGCAATCCTGGTGGAGTATGAGGACGGCGATGGCGATGTGAAGCAGCTGGACATCATGGAGTCGCGACCG--
-------AATGGCAGTAAGATGGCTCCAACAGGGCAGTGGGTGCCCATGAAGGAGTCGTGGGGATCCATCTGGAGGATGG
ATGCCCACCACCCCATGCACGGGCCATTCTCGTTGCGCGTCACCAACGAGTCCGGCAAGACACTCGTGGCCGAACAGGTC
ATCCCCATCGATTGGAAGCCCAACAAAACCTACAGCTCCCTCGTCCAGTTTCATTAA-----------------------
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>chr3D_1_TraesCS3D01G000500
CAATCAAATCAAATAATCTTAGTATCCATGTATGATCTCCTAAGTCCAACACCACGAAAAAACAACAAAAGATGTATATC
ATGGTGAATTCATGAACATCATGTCTATAC-TGCAAAAAAATAGTTTTTTTAAAAGATAGGTCCTTTCTAGAA--GATCC
ATTCAAAATGGATCATTGAAAC-CTAAATAGTACTACAATCTAAAAGCAGAGTACACTAATCATTAGTACATCACC-AAA
CTCTTTACAATTTTTCCCTACAGGGCCATTAATTATGGAGACATTGATCAACCCTAAATCGAAAAAC-CAGAAAGTTGAT
CTATTGGCCTAACTAAACTGAGCAGAAAATCACACACACCTCAACTTTTTCGAACAACTAACGCAAAGGGCTCGCATAAT
ACTATCAGAAGCACGAAACGAATGAAGCCCTAAACATCTTGATAATCGTACGTGTTCCACAGAAATGAGGGCCGAAACTT
GCCGAAGTCAGAAGTGAGGCCTCCTGGCTGTCAATGCTCAGACACCATGGTATTCTTCGTCGTAATGATCGTCGACGATC
TTGGCCATCATCAGTCAGCCGTCCCACTTACTCCTCTGTTCCAATTGCCACTTTAAACGACGACGTTGGAGAGGACAGGT
GCAGTGAGTTGGAAAACGAGGTAGCGATATGTACATATAGAATTTTTCTTTTTC-TTTTTTAGAAAAGTATTATATAACA
AGCCAGTTTAGCCCACGCCGCGTTCTCACATTAACAAGCTTATTAATGTCAACATATACGGTATATTTTCATATATTCTT
ATTTAGTGTTGTAGATACAGACTGATTTCTCTATTAAATTGATTAAATGAAATAATTAAAAGCAAGTTTCAAATAATAAT
AATTAAAAGCAAATATATTATGTAATTAATATCCGTCTCTGTGGGCGCTGCTACCAGTTTTTGCCTGGCAGTCGGCGATA
TATAAGTACGGCAAAGTGCACAGCGCCGTCCGGCACAAGAGCCAGCGATGGCATCCTCCTCCATTGCGGTCGCAGCTGCT
CTGATCCTCTGCATCCTCGTCAC------------------TCATGCCCATGGTTGCTACGCCAAGCACCACGCGGCTCC
TTCTGCGGCCAACTCCAGCTGGCTTGATGCCAAGGCGACATGGTACGGCGCGCCCCGTGGTGCCGGGCCTGACGACAACG
GCGGCGCGTGCGGGTTCAAGAACGTCAACTTACCACCCTTCTCCTCCATGACCTCCTGCGGCAACCAGCCGCTGTTCAAG
GACGGCAAGGGCTGCGGCTCCTGCTATCAGGTACGATACGACCCACCTTACGCTATCATTAGT----TTACTATACACCT
GCAAGCAATTATGTTACTCCCTCTAATCCATATTAATTATCCCTGATTTGGTACAATTTAATACTGAATCAGCAAAATTT
AATATAGATTGGAGGGAGTACCACTGGAATCTATTTATT-----------------------------------------
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--------------------------------------------------------------------------TTTACA
AACCAATATGTTACCAACACATTGTTTTTTAGCCATCATTATTCACGTGCATGCATTCAGAAATATTCATATAGGATATA
GATC----------TGTTT-ATGTGCAGCCTGTAACATC---------------------------GTGCACTGCAAATG
CAGATAAGGTGCTTAAAGTCGGACCACCCTGCGTGCTCCGGCGTGCCGAAGACGGTGATCATCACAGACATGAACTACTA
CCCGGTCTCCCGCTACCACTTCGACCTCAGTGGCACCGCCTTCGGAGCCATGGCCAAGGACGGCCGCAACGACGAGCTCC
GCCACGCCGGCATTATCAACATGCAGTTCAAGAGGTACCACACC--------CACCTACCGATAATGCCAGTCAGCATCA
TACCCATCTCCTTACCTTATTGAGATCGAGAGCTAGACGATATTGTGTGTTTGTGAGACGACACATACTG--ACACCGGT
GAGTGACATGGCTGCGCAGGGTGCCGTGCCAGTATCCGGGGCTGACGGTGACGTTCCACGTGGAGGAGGGGTCGAACCCG
TTCTACATGGCAATCCTGGTGGAGTATGAGGACGGCGATGGCGATGTGAAGCAGCTGGACATCATGGAGTCGCGACCG--
-------AATGGCAGTAAGATGGCTCCAACAGGGCAGTGGGTGCCCATGAAGGAGTCGTGGGGATCCATCTGGAGGATGG
ATGCCCACCACCCCATGCACGGGCCATTCTCGTTGCGCGTCACCAACGAGTCCGGCAAGACACTCGTGGCCGAACAGGTC
ATCCCCATCGATTGGAAGCCCAACAAAACCTACAGCTCCCTCGTCCAGTTTCATTAATTGATTGATCGGCCAGATATGCC
C----------------ATATATATATGGAAGCAATGAAAAGGGGAGTACTCTGATTTGTTCAAGAAAAAATAAATATGG
TACATGCGTGCGTGCCTATGTAGCAGGCTGGGACGGCGCCTGTGATGTCCGGTTGCATTGCATGTGTGCCCGTCCATCGT
ATAATTCATGTGCTTATATATCTATCTCTATGAATTAATGT--------TATAGAATTACTCATTTAGCGTAATGTTAAT
ACATTTACGGTTGTGCATTAGACACATAAATTTGATCTGCACCACATGATCCCTGAGCTTTATTATTAGCTTTTTCTACG
GGGAAGCTTTATTAGGACGACATAGCACATTACTGGGAACCACAGCTTTGCCGAGTGCCTAGAAAACTCTGCAAAGGTCG
GAAACAACTCGACAATGT-GTTTGCCGAGTACC-----GGCGAACAAGATTCAGCCAGGAACACTCCGTTAGTGAGTTAC
TTTGCCGAGTGCTTATCATCGG-AAACTCCGCAAAGAGTCGCTCTTTGCCGAGTTTCGCCATGTGTCAACTTGCCAAACT
TACACCATAGACGGAGC------GGCCCATTAACGGCCGCGCCAC--CGCATCAACTTTGCTGAGTGCCCCTGGCTCGTG
TTCAACATTGTTTTCTTTTTTTGAGAATCACTGGGGGGT-----GGGTGGAGTTCCCCACCTGAATATATTACTCAAAGT
CTGCCGACGCAGCAAAGTACATAAATTACAAGGGAACGGTGGAACGTGCAGAGAGGTAGGAACGCCATGAGAAGACGTCC
TCCATGTCACTCGTCTTCATGATATGATGTGACTAGAGATCTAA--------------GTCTAAGGTTTATTACAGAATG
TTGGTCAATGTACCTAAATAACATGTCGCTGCAGGCAGCCCAGATCTTCCATGAGAGTGTAAGCAGAACAAGTGGCCAAG
CTTTGGGAGGCAAGTGTCGAGGGAGAGTAGCGTCCCACAACTGGTTTATGTCCGCAGTCGACGAACAATACCCAC-----
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>chr3B_1
CAATCAAACTAAATAATCTTAGTATCCATGTATGTTTTCATAGGTCCAACACCACGAAAAAACAAGAAATGATGTATATC
ATGGTGAATTCACTGC--------------------AAAAAAAAGTTTGTTAAAAGATAGGTCCTTTCTAGAA--GATCC
ATTTAAAATGGATCATTGAAACCCTAAATAGTACTACAACCTAAAAGCAGACTACACTAATCATTAGTACATTGCC-AAA
CTCTTTACAATTTTTCCCTATAGGGCCATTAATTACAGAGACATTGATCAACACTAAAACGAAAAAAACAGAAAGTTGAT
CTATTGGCCTAACTAAACAGAGCA-AAAATCACACACACCTCAACATTTTTGAACAACTGACGCAAAGGGCTCGCATAAT
ACTATCAGAAGCACGAAACGAATGAAGCCCTAAACATCTTGATAATCGTACGTGGTCCACAAAAATGAGGGCCAAAACTT
GCCGAAATCAGAAGTAACGCCTTCTGGTTGTCGATGCTCACACACCATGGTATTCTTCGTCGTAATGATCGTCGACGATC
TTGGCCATCATCAATCAGCCGTCCCACTCACTCCTCTGTCCCAATTGCTACTTTAAACGACGACGTTGGAGAGAACAGGT
GCAGTGAGTTGGAAAACGAGGTAGCGAC-TGTACATATATAAATTTTCTTTTTCATTTTCTAGAAAAGTATTATGTAACA
AGCCAGTTTAGCCCACGCCATGTTCTCACATTAACAAGCTAATTAATGTCAACATATACGGTATATTTTCATATATTCTT
ATTTGGTGTTGCAGATACAGACTGATTTCTCTATTAAATTGATTAAATGAAATAATTAAAAGCAAGTTTCAAATAATAAT
AATTAAAAGAAAATATATTATGCAATTAATATCCGTCTCTGTGGGCGCTGCTACCAGTTTTTGCCTGGCAGTCGGCGATA
TATAAGTACGGCAAAGTGCACAGCGCCGTCCGGCACAAGAGCTAGCGATGGCATCCTCCTCTGTTGTGGTCGCGGCTGCT
CTGATCCTCTGCATCCTCGTCGC------------------CCATGCCCATGGCTGCTACGCCAAGCACCACACGGCTCC
TTCTGCGACCAACTCCAGCTGGCTTGATGCCAAGGCGACATGGTACGGCGCGCCCCATGGTACCGGGCCTGATGACAATG
GCGGCGCGTGCGGGTTCAAGAACGTCAACTTACCACCCTTCTCCTCTATGACCTCCTGCGGCAACCAGCCGCTCTTCAAG
GACGGCAAGGGCTGCGGCTCCTGCTATCAGGTACGATATGGCCCACCCTACGCTATCATTAGT----TTACTACACACTT
GCAAGCAATTATGTTATTCCCTCCAATCCACATTAATTATCGCTGATTTGTTACAATTTTATACTGAATAATTAAAATTT
AATATAGATTGGAGGGAGTACCACTATAATCTATTTATT-----------------------------------------
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--------------------------------------------------------------------------TTTA--
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>chr3B_1
CAATCAAAGCAAATAATCTTAGTATCCATGTATGATCTCATAGGTCCAACATCACGAAAAAATAACAAATGATGTATATC
ATGGTGAATTCATGAACATAAATGTCTACATTGC-AAAAAATAGTTTTTTTAAAAGATAGGTCCTTTCTAGAA--GATCC
ATTCAAAATGGATCATCGAAACCCTAAATAGTACTACAATCTAAAAGCAGAGTACACTAATCATTAGTACATCGCC-AAA
C-CATTACAATTTTTCCCTACGGGGCCATTAATTACAAAGACAATGATCAACCTTAAATCAAAAAACA-AGAAAGTTGAT
CTATTGGCCTAACTAAACAGAGCA-AAAACCACACACACCTCAACTTTTTCGAACAACTGACGCAAAGGGCTCGCATAAT
ACTATCAGAAGCACGAAACGCATGAAGCCCTAAACATCTTGATAATCGTACGTGGTCCATATAAATGAGGGCCAAAACTT
GCCGAAGTCAGAAGCGAGGCCTCCTGGTTGTCGATGCTCAGACACCATGGTATTCTTCGTCGTAATGATCGTCGACGATC
TTGGCCATCATCAATCAGCCGTCCCAGTCACTCCTCTGTCCCATTTGCCACTTTAAACGACGACGTTGGAGAGGACAGGT
GCAGTGAGTTGGAAAACGAGGTAGCGACATGTACATATAGAACTTTTCTTTTTCTATTTTTAGAAAAGTATTATGTAACA
AGCCAGTTTAGCCCACACCGCGTTGTCACATTAACAAGCTTATTAATGTCA-------CGGTATATTTTCATATATTCTT
ATTTAGTGTTGTAGATACAGACTGATTTCTCTATTAAATTGATTAAATGAAATAATTAAAAGCAAGTTTCAAATAATAAT
AATCAAAAGCAAATATATTATGC-ATTAATATATGTCTCTGTGGGCGCTGCTACCAGTTTTTGCCTGGCAGTCGGCAATA
TATAAGTACGGCAAAGTGCACAGCGCCGTCCGGAACAAGAGCCAGCGATGGCATCCTCCTCCATTGCGGTCGCGGCTGCT
CTGATCCTCTGCATCCTCGTCGC------------------CCATGCCCATGGCTGCTACGCCAAGCACCACGCGGCTCC
TTCTGCGGCCAACTCCAGCTGGCTTGATGCCAAGGCGACATGGTACGGCGCACCCCATGGTGCCGGGCCTGACGACAATG
GCGGCGCGTGCGGGTTCAAGAACGTCAACTTACCACCCTTCTCCTCCATGACCTCCTGCGGCAACCAGCCGCTCTTCAAG
GACGGCAAGGGCTGTGGCTCCTGCTATCAGGTACGATACGACCCACCTTACGCTATCATTAGT----TTATTACACACCT
GCAAGCAATTATGTTATTCCCTCCAATCCATATTAATTATCGCTGATTTGTTATAATTTTATACTGAATAATTAAAATTT
AATATAGATTGGAGGGAGTACCACTATAATTTATTTATT-----------------------------------------
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--------------------------------------------------------------------------TTTACA
AACCAATATGTTACCAGCACATTGTTTTTTAGCCATTATTATTCGAGTGCATGCATTCAGACATATTCGTATAGGATATA
GATG----------TGTTT-ATATGCAGCCTGTAACGTC---------------------------GTGCACTACAAGTG
CAGATAAGGTGCTTAAAGCCAGACCACCCTGCGTGCTCCGGTGTGCCGAAGACGGTGATCATCACGGACATGAACTACTA
CCCGGTCTCCCGCTACCACTTCGACCTCAGTGGCACCGCCTTCGGAGCCATGGCCAAGGACGGCCGCAACGACGAGCTCC
GCCACGCCGGCATGATCAACATGCAGTTCAAGAGGTACCACACC-------------------------------CATCA
TAGCCATCGTCTTACCTTATTGAGATCGAGAGCTAGACGATATTGTGTGTTTATGAGACGACACACACTG--ACACACCT
AAGGGACATGACTGCGCAGGGTACCGTGCCAGTATCCGGGGCTGACGGTGACGTTCCACGTGGAGGAGGGGTCGAACCCG
TTCTACATGGCAATCCTGGTGGAGTACGAGAACGGCGATGGCAATGTGAATCAGCTGGACATCATGGAGTCGCGACCG--
-------AATGGCGGTAAGATGGCTCCAACAGGGCAGTGGGTGCCCATGAAGGAGTCGTGGGGTTCCATCTGGAGGATGG
ATGCCCACCACCCCATGAAGGCGCCATTCTCGTTGCGCATCACCAACGAGTCCGGCAAGACACTTGTCGCCGAACAGGTC
ATCCCCATCGATTGGAAGCCCAACAAAACCTACAGCTCCCTCGTCCAGTTTCATTAACTGATCGATGGGCCAGATATGCC
C----------------ATATATATATGAAACTAATGAAATGGGTAGTAGCCTGATTTGAAGAGAAAAAATTG----TGG
TACATGCGTGCGTGCCTATGTAGCCGGCTGAGACGTCGCCTGTGATGTCCAGTTGCAA-----GTGTGTCCGTCCATCCT
------------------------TCTATATCAATATCAATAAATGTTATATACAACTGCTTATTTAGGGTAATGTT-AT
ACATTTGTGGTTGTGCATTAGACATATAAATTTGATATGCGCCC------------------------------------
---------------------------CATTACTGGGCTCCGCAGCTTTGCCGAGTGCCCAGAGAACTCTACAAATGCAG
GAAACAACTCGACAATAT-TTTGCCGAGTTCTGCACCGGGCGAACAAGACTCGGCCACGAACATGTTGGTAATGAGCTAC
TTTTCCGAGTGCTTATCATCAGAAAACTCAGCAAAGAGTCACTCTTTGCCGAGTTTCGCCATGTGTCAACTTGGCAAACT
TCCACCATAGACGGAGGGGGAGTGGCCCATTAACGGCCGCACCACGCCACACTAACTTTCCTGCGTGCTCCCGGCTCGTA
CTCAACATTGT---------------------------------------------------------------------
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>chr3A_1
CAATCAAACCAAATAATCTTAGTAT-CATGTATGTTCTCATAGGTCCAACACCACGAAAAAACAAGAAATGATGTATATC
ATGGTGAATTCATGAACATCAATGTCTACACTGC-AAAAAAATAGTTTTTTAAAAGATAGGTCCTTTCCAGAAAAGATCC
ATTCAAAATGGATCATTGAAACCCTAAATAGTACTACAATCTAAAAGCGGAGTACACTAATCATTAGTACATCGCCAAAC
T-CTTTACAATTTTTCCCTACAGGGCCATTAATTACGGAGACATTGATCAACCCTAAATTG--AAAACCAGAAAGTTGAT
CTATTGGCCTAACTAAACAGAGCA-AAAATCACACACACCTCAACTTTTTCGAACAACTGACGCAAAGGGCTCGCATAAT
ACTATCAGAAGCACGAAACGAATGAAGCCCTAAATATCTTGATAATGGTACGTGGTCCATAGAAATGAGGGACAAAACTT
GCCGAAGTTAGAAGTGAGGCCTA-TGGTTGTCGATGCTCAGACACCATGGTATTCTTCGTCGTAATGATCGTCGACGATC
TTGGCCATCATCAATCAGCCGTCCCACTTAATCCTCTGTCTCAATTGCCACTTTAAACGACGACGTTGGAGAGGACAGGT
GCAGTGAGTTGGAAAATGAGGTAGTGACATGTACATATAGAATTTTTCTTTTTTCATTTTTAGAAAAGTATTATGTAACA
AGCCAGTTTAGCCCACGCCGCGTTCTAACATTAACAAGCTTATTAATGTCAACATATACGGTATATTTTCATATATTCTT
ATTTAGTGTTGCAGATACAGACTGATTTCTCTATTAAATTGATTAAATGAAATAATTAAAAACAAAAAG-----------
----------------ATTATTTAATTAATATCCTTCTCTGTGGGTGCCGCTACCAGTTTTTGCTGCGC-----------
TATAAGTACGGCAGAGTGCCCAGCGTTGTCCGGCACAAGAACCAGCGATGGCATCCTCCTCCGTTGCGGTCGCGGCTGCT
CTGATCCTCGTCTCCCATGCCTATGGCTGCTACGCCAAGCACCA---------------------------CGCGTTTCC
TGCTGTGGCCAATTCCAGCTGGCTTGACGCCAAGGCGACATGGTACGGAGCACCCCATGGTGCCGGTCCCGACGACAACG
GCGGCGCGTGCGGGTTCAAGAACGTCAACTTGCCACCCTTCTCCTCCATGACCTCCTGCGGCAACCAGCCGCTCTTCAAG
GACGGCAAGGGTTGCGGCTCCTGCTACCAGGTACGATACGACCCACCTTACGCTATCATTCGT----TTACTACACACT-
GCATGCAATTATGTTACTTCCTCTGATTCATATTAATTATCGCTGATTTAGTACAATTTTATACTGAATCGGCAAAATTT
AATATAGATTAGAGGGAGTACCACTATAATCTATTTATTTTCGCAAAGTTCCTTCCTAGCCCGAGCTACACGGTACCCAC
TATCTCCAGCGTCAGTTCACTTCGAGATATGTGCAATGCTCAGCGGCAGAGTCAAACAATTAGCAGATTGTAGCTGTCTC
ATCCTCTCAGCATGAACCGTAATCTTTGCTGGACATTGCATTCTCTCCTCACGTCCTGTCTCATCCTCTCATAAAATACT
CGGCATGCACATGCAGCATCTGCTGGACATTTCTCTCTCTCCCCCTCCCTCTCATAAAATATTTCTGCATGGGCATGCAC
AAGAGAAGCTCTATCTCTCTCACGGTGTGTGACATGCATGCACAAGCATACTCTCTCTCCTCAGCGTCCCTCTCTCACAA
CTCTCTCTCATGAAAAGATGTGACTGCCAGGGTGTGGATGTTGTACTGTTCATGACATGAGTTAAAAAAACTAAGAGAAG
AGAGAGTAGCAGGGAAGAGAGCATAAAGAAAGAGAGAGAAGAGTTGCATGCAGGGAAGAACGAGAGAGTCAGAGGCACAT
ACGACGTCATGTCATGAACAGTTCCCTCACATGCAGATGATTAAGGATTAAGCGTGTGACGCCAACTGCTGTGTGCACAT
ATCTCGATGAACACATGGGCACGATTGAAAGGCTGAGATAAGGGGTACCGTGTAGCCCCAGCTAGGAAAAACCGTTTACA
AACCAATTTGTTACCAACACATTGTTTTTTAGCCATTATTATTCGCGTGCATGCATTCAGAAATATTCATATAGGATATA
GATG----------TGTTTCATGTGCAGCCTGTAATGTC---------------------------GTGCACTGCAAATG
CAGATAAGGTGCTTAAAGTCAGACCACCCTGCGTGCTCCGGTGTGCCGAAGACGGTGATCATCACGGACATGAACTACTA
CCCTGTCTCCCGCTACCACTTCGACCTCAGTGGCACCGCCTTCGGAGCCATGGCCAAGGACGGCCGCAACGACGAGCTCC
GCCACGCCGGCATGATCAACATGCAGTTCAAGAGGTACCACACC--------CACCTGCCTATAACGCCAGTCAGCATCA
TAGCCATCGTCTTACCTTATTGAGATCGAGAGCTAGATGATATTGTGTGTTTATGAGATGACACACACTG--ACACCAGT
GAGTTACATGGCTGCGCAGGGTGCCGTGCCATTACCCGGGACTGACGGTGACGTTCCATGTGGAGGACGGGTCGAACCCG
TTCTACATGGCAATCCTGGTGGAGTACGAGGACGGCGATGGCGATGTGAAGCAGCTGGACATCATGGAGTCGCGACCGGG
CGCTGTTAGTGGCGGCAAGATGGCTCCAACGGGGCAGTGGGTGCCCATGAAGGAGTCATGGGGATCCATCTGGAGGATGG
ATGCCCACCACCCCATGCAGGGGCCATTCTCGTTGCGCGTCACCAACGAGTCCGGGAAGACACTCGTCGCCGAACAGGTT
ATCCCCATCGATTGGAAGCCCAACAAAACCTACAGCTCCCACGTCCAGTTTCATTAATTGATTGATCGGCCAAATATGCC
CATATATATATATATATATATATATATGGAAGTAATGAAAAGGGGAGCACCCTGATTTGTCAAAGAAAAAATAAATATGG
TACATGTGTGCGTGCCTATGTAGCAGGCTGAGACGTCGCCTGTGATGTCTGGTTGCAT-----GTGTGTTCGTCCATCCT
CAGCTTA--------ATATATCTATCTATATCAATATCAATAAATGTTATATACAACTGCTTATTTAGTGTAATGTT-AT
ACATTTATGGTTGTGCATTAGACGCATAAATTTGATCTGCACCACATGATCCCAAAGCTTTATTATTAGCATTTGCTACG
GGGAAGCTTTATTCGGACGGCATAGCACATTGCTGGGAACCGCAGCTTTCCCGAGTGCCCAGAGAACTCTGCAAACGCCG
GAAACAACTCGGCAATGTGTTTGGTGAGTTCCGCACCGGGCGAACAAGACTCCACCAAGAACACGCTGGTAATGAGTTAC
TATG-CGAGTGCTTATCATCGGAAACTTG-GCAAAGAGTCGCTCTTTGTCGAGTTTCGCCATGTGTCAACTTGCCAAACT
TACACCATAGACGGAGC------GGCCCATTAACTGTCGCGCCACACCGCACCAAATTTGTTGTGTGCCCCCGCCTCATG
TTCAACATTGTTTTCTTTTTTTGTGAATCACAGGAGGGGGGTGGGGGTGGAGTTCCCCTCCTGTATATATTACACAAAGT
CTA-CGACGCAGCAAAGTACAGAAATTACAAGGGAACGGTGGAACGTGCAGAGAGATAGAAAAGCCATAAGAAGATCTCC
TCCTTGTCACTCGTCTTCATGATATGATGTGACCAGAGATCTAAGTCTAAGATAACAAGTTTAAGGGTTATTACAGAATG
TTGGTCAATGGACCTAAATAACATGTCGCTGCGGGCAGCCAAGATCTTCTATAATAGTGTAAGCAGAACAAGTGGCCAAG
CTTTGGGAGGCAAGTGTCGAGGGAGAGTAGCGTCCCACAACTCGTTTATGTCCACAGCCGACGAACAATGCCCACACGCT
ACCACACTCTGTCCGCCGGAGGGCATGTGATAAAGAGGTGGATCGTATCTTCAGGAAGCTGTAGGCACCTTGGGCACAAG
TTGGACGAGATGATATTTCTGTGCGCCAGATTTTCCCTAGTATTGAGTCTGTCTTGTTGGAAATTTTCCCTCGGGATCGA
TCACATCAGAATAACACGAACACACGCGTACACAAACTCACGCCGACGTCCCAAATATATAAAGGCTTAGGCTACGGACG
TAGACTCCTATTTCCTAACCTACACGGACTAGTAGAAGCAAAGCTACCCAAGCTAACCATCAATTCTAATCCGTCTAGTA
CTACTACTCTTGACCAGACTCATATTGACTTACCTAATCTAATCACGCGGCATCACAATAATGCTAATATAGTCCTAACC
GGACATAACTTTGTTATGCATCCAACGCGCACGGTACATCTACTAACTCATCTATGTTTGGATTATTCCAACAAGCACCC
CCTAATCCAAACATCTAACTCTTCACTCGACGAGACACGCAGACGACTCTCTATTCATCTTATCACGCCCGTTGTCTTCG
GTGACGTGACTTACCGGATCACAACTTCTCTCTTCATGTAATGATGGCCACCACTTCATCCTCACCGCAACTTCATTTGC
ATATCCACTCATAGAGTTTAACCAACGATTATCTGGACTACCAGCCACGCTGCCACATCTTAGCGTCCCACATGCAGACT
AAACGCATAGCCTCATGCAGAAACTCAACTTAACTGGCCCGCATCCATCTTCACGTTGATATTCATCTTCTCGTCGGTTG
CTTGTACGTGGGAAGGCACAACTCTTCACCCACCACATCTTCACATCTTCACATCTTTTCAGTGTCGCCGATGCCACATC
TTATCAAACGACACCTCCTGTCCAGCGACAACACAACTCGCCATATACGTGCAACTCATCTCCATCATATATGAACTCGC
CGTAACTCCACGACCACGAAGGGAAACGCAAGGCACACATTCTTTTTTCCATCCGCACTCGCTCTCAATTCTCAAAGTCT
GCCTACACAGCAAAGTACATAAATTACAAAGGAACGGTGGAACGTGCAGAGAGATAGGAACGCCACAAGAAGACGTCATC
CTTGTCACTCGTCTTCATGATATGATATGACCAGAGATCTATGTCTAAGATAACAAGTCTAAGGGTTATTACAGAATGTT
GGTCAATGGACCTTAATAACATGTCGCTGCAGGCAGCCAAGATCTTCTATAAGAGTGTAAGCAGAACAAGTAGCCAAGCT
TTGGGATGCAAGTGTCGAGGGAGAGTAGCGTCCCACAACTCGTTTATGTCTGCAGCCGACGAACA
>chr3A_21
--------------------AGTAT-CATGTATGTTCTCATAGGTCCAACACCACGAAAAAACAAGAAATGATGTATATC
ATGGTGAATTCATGAACATCAATGTCTACATTGCAAAAAAATAGTTTTTTTAAAAGATAGGTCCTTTCCAGAAAAGATCC
ATTCAAAATGGATCATTGAAACCCTAAATAGTACTACAATCTAAAAGCGGAGTACACTAATTATTAGTACATCGCCAAAA
T-CTTTACAATTTTTCCCTACAGGGCCATTAATTACGGAGACATTGATCAACCCTAAATCG--AAAACCAGAAAGTTGAT
CTATTGGCCTAACTAAACAGAGCA-AAAATCACACACACCTCAACTTTTTCGAAAAACTGACGCAAAGGGCTCGCAGAAT
ACTATCAGAAGCACGAAACAAATGAAGCCCTAAATATCTTGATAATCGTACATGGTCCATAGAAATGAGGGCCAAAACTT
GCCGAAGTCAGAAGTGAGGCCTCCTGATTGTCGATGCTTAGACACCATGGTATTCTTCGTCGTAGTGATCGTCGACGATC
TTGGCCATCATCAATCAGCCGTCCCACTTAATCCTCTGTCCCAATTGCCACTTTAAACGACGACGTTGGAGAGGACAGGT
GCAGTGAGTTGGAAAACGAGGTAGCGACATGTACATATAGAATTTTTCTTTTTCGTTTTTTAGGAAAGTATCATGTAACA
AGCCAGTTTAGCCCACGCCGCGTTCTCACATTAACAAGCTTATAAATGTCAATCTATATGGTAT-TTTTCATATATTCTT
AATTAGTGTTGTAGATACAGACTGAGTTCTCTATTAAATTGATTAAATGGAATAATTAAAAGCAAGTTTCAAATAATAAT
AATTAAAAGCAAATATATCTTGCAATTAATATCCGTCTCTATGGGCGCTGCTACCAGTTTTTGCCTGGCAGTCAACGATA
TATAAGTACGACAAAGTGCACAATGCCGTCCGGCACAAGAGCCAACGATGGCATCCTCCTCCATTGCGGTCGCGACTGCT
CTGATCCTCTGCATCCTCGTCGC------------------CCA---------------------------CGCGTTTCT
TGCTGCGGCCAATTCCAGCTGGCTTGATGCCAAGGCGACATGGTACTGCGCGCCCCATGG--------------------
--------------------------------------------------------------------------------
------------------------TATCAGGTACGATACGACCCACCTTACGCTATCATTAGTCCGTTTACTACACACCT
GCAAGCAATTGTGTTATTCC------------------ATCGCTGATTTGATACAATTTTATACTGAATCGGCAAAATTT
AATATAGATTGGAGGGAGTACCACTATAATCTATTTATT-----------------------------------------
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--------------------------------------------------------------------------TTTACA
AACCAATTTGTTACCAACACATTGTTTTTTAGCCATTATTATTCGCGTGCATGCATTCAGAAATATTCATATAGGATATA
GATG----------TGTTTCATGTGCAGCCTGTAATGTC---------------------------GTGCAC--------
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>chr3D_1092
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----------------------------------------------------------------------------CTCC
TCCTGCAGCCAATTCCAGCTGGCTCGCTGCCAAGGCGACATGGTACGGCGCGCGCCACGGCGCCGGGCCCGACGACAATG
GTGGCGCTTGCGGGTTCAAGAACGTCAACTTGCCCCCCTTCTCCGCCATGACCTCCTGCGGTAACGAGCCGCTCTTCAAG
GACGGCAAGGGCTGCGGCTCCTGCTACCAGGTACGACCC-GGCCGCCGTACGTTAGCACTAC------TACTACACACT-
GCATGCATGC----------------------------------------------------------------------
-----------------GTACCACTACATTATGG----------------------------------------------
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------------------------------------------TCACATGCATGCATGCAGAGATATTCTACATAGTTCTT
TTTTCTTTTGCGAATGTGT-ATGTGCAGCCTAACGTTGTAACTGATCATGGATGGTGGTCGATGGTGTGCAACGTAAATG
CAGATAAGGTGCTTAAGGTCAAACCACCCTGCGTGCTCTGGTGTGCCGGAGACGGTGATCATCACGGACATGAACTACTA
TCCGGTCTCTCCCTACCACTTCGACCTCAGCGGCACTGCCTTTGGAGCCATGGCCAAGGACGGCCGCAACGACGAGCTTC
GTAATGCGGGCATCATTGACATGCAGTTTCGGAGGTACCACACC--------CACCTATCTATTCCGCCGGTCACCATCA
TAACCATCGTATTATCTTACCA------------AGATGATATTTTGTGTTTGGGAGACGACATTTACTG--ACACTGGC
GACTGGTATGGCTCTGCAGGGTGCCGTGCCAGTACCCGGGGCTGGCCGTGATGTTCCACGTGGAGAAGGGGTCGAACCCG
TTCTACATGGCAATCCTGGTGGAATACGAGAACGGCGACGGCGATGTGAAACTGCTGGAAATCATGGAGTCACGTCCGGA
CGCTGGTAACGGCGGCGAGATGGCTCCAACGGGGGACTGGGTGCCCATGAAGGAGTCGTGGGGTTCCATCTGGAGGATGG
ATGCCCGACACCGCATGCAGGGGTCATTCTCGTTGCGCATCACTAACGAGTCTGGCAAGATGCTCGTCGGCGACCAGGTC
ATCCCCGCTGACTGGAAGCCAGAAAAAGTCTACAGCTCCGTCATCCAGTTTGATTAATTGATGGATCGACCATTTATG--
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>chr3A_1565
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------------------------------------------------------------------GTGCAACGTAAATG
CAGATAAGGTGCTTAAGGTCAAACCACCCTGCGTGCTCCGGTGTGCCCGAGACGGTGATCATCACGGACATGAACTACTA
TCCGGTCTTTCCCTACCACTTCGACCTCAGCGGCACTGCCTTTGGAGCCATGGCCAAGGACGGCCGCAACGACGAGCTCC
GCAATGCGGGCATCATTGACATGCAGTTCCGGAGGTACCACACCGGCACACCCACTTACCTATTCTGCCAGTCACCATCA
TGAGCATCGTCTTATCTTACTA------------AGATGATATTTAGTGTTTGGGAGACGACACACACACTAACACTAGC
GAGTGGTATGGCTCTGCAGGGTGCCGTGCCAGTACCCCGGGCTGGCGGTGATGTTCCATGTGGAGAAGGGGTCGAACCCG
TTCTACATGGCAATCCTGGTGGAATACGAGAACGGCGACGGCGATGTGAAACTGCTGGAAATCATGGAGTCACGTCCGGT
TGCTGGCAACGGCGGCGAGATGGCTCCAACGGGGGAGTGGGTGCCCATGAAGGAGTCATGGGGATCCATCTGGAGGATGG
ATGCCCGGCACCGCATGCAGGGGCCATTCTCGTTACGCATCACTAACGAGTCTGGCAAGATGCTCGTCGCCGATCAGGTC
ATCCCCGCTGTCTGGAAGCCGGAAAAAGTATACAGCTCGGTCATCCAGTTTGATTAATTGATGGATCGACCATTTATGCC
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-----------------------------------------------------------------
>SNPs
--------S------------------------------S--S--------------------------S----------
---------------------SSSSSSSSS--------------------------------------------------
-------------------------------------------------------------------------S------
-----------------------------------S--------------------------------------------
------------------S-----S----------------------------------S--------------------
------------------------------------------------------S------------------S------
---------------------------S----S-----------------------------------------------
-------------S-------------------------S----------------------------------------
---------------------------S----------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
---------------------S-------------------S-----------S--------------------------
--------------------------------------------------------S-----------------------
-------------------------------------------------------------------------S------
-------------------------------------------------------------------------S------
-----------------------------------------S-----------------S--------------------
-------------------------SS-----------------------------------------------------
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------------------------------------S-------------------------------------------
---S--------------------------------S-------------------------------------------
--------------------S--------------------S-----------------------S--------------
--------------------------------------------------------------------------------
-------------S----------------------------------------------S-------------------
--S-----SS----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
-------------S------------------------------------------------------------------
-------------------S-----------------------------------------------S------------
--------------------------------------------------------------------------------
--------------------------------S-----------------S---------SS------------------
------------------------------S----S----------------------SSSSS-----S---------S-
SSSS--SSSSSSSSS------------S---S---SSSSS-------------S--S-S--S------S--------S--
-------S---------------------------------------------SS---------------S---S-----
-------------S-----S---------------------S-----------------S---S-----------S-S--
-------------------S--S--SSSS-S-S----------------S--S----S------S-S-S--S--------
-----------------------------S--------------------------------------------------
---------------------------------------------------S-----------S-------S--------
-----------------------S-------S--S---S-------------------S----S---------S------
--SS-----------------S---------------------------------S---S--S-----S------SS---
---S-----------------------------S--------------------------S-----S-------------
----------S---------------------S-------S--------S--S-S-------------------------
------------------------------------------S----------S---S-----------S----------
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-----------------------------------------------------------------
>forward_474
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------------------------------------------------------TTCCACAGAAATGAGGGCCG------
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-----------------------------------------------------------------
>reverse_2814
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-------------AGTAAGATGGCTCCAACAGGG----------------------------------------------
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>forward_1082
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----------------------TCCTCTGCATCCTCGTCACT--------------------------------------
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-----------------------------------------------------------------
>reverse_3466
--------------------------------------------------------------------------------
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-------------------------CGAGTACCGGCGAACAAGAT-----------------------------------
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-----------------------------------------------------------------
