>input_sequence_56200
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------ATGTCAGCAGCCATGGCGGCGCCGAGCGCGCTCCCGGCCGAGGTGCCTTCATACTTCCTCTGCCCGATCTCGCT
GCAGCTCATGCGCGACCCGGTCACGCTGCCCACCGGCATCTCCTACGACCGCGCCGCCATCTCGCGCTGGCTCGCCGCGT
CCGCTGCGCCGGCCGCGTGCAGCACCAGCCAGCGCACCTGCCCCGTCACGCGCCAGCCGCTCGAGCCGGAGCTCCAGCTC
ACGCCCAACCACACCCTCCGCCGCCTCATCGGCTCCTGGGTCGCGTCCGTCTCCCCCGGCTCCGACGTCGAGGGGGAGGT
GGCCGCGCTGAGGCCCGTGCGCCGGGACGAGCTCGCGAAGCTGCTCTCCGACGCCGCCGCGGCCCAGGTCGGCGCGCTCA
GGAAGCTGGGGGAATTGGTGGCCGAGTGCGAGGACACGAGGGCAATGCTCGAGTCCCAGGATGGCGTGTTCGACGCGCTG
TCTCGTGTCCTCACCGGCGCCAGCGCTTGCTCCACTGCGCGGGAGGAGGCCGTCGGGGTCCTCTCGTCGCTCCGGATCCC
GGAGCAGGAGCTGGTCCGCGTCGTGTCCAGGCACGGCAACCTGGCGGAGTCCCTCACGGCCGTGCTCCGCTCGTCCAACC
TACAGTCGCGGGCGCAGGCCGTGCGGCTCGTGAGGTCGCTGGCCGACGTCTCCGTGCCGGCCTGGGTCATCGGGCTCAAC
CAGGAGCTCCTCGCCGAGGTGATCCGCGTGGTCCGCGACCGCGTCTCGACGCGCGCCACTAAGGCGGCGCTCCACGCGCT
CTCCGCGCTCTGCCCGTACGGCCGGAACCGCGTCAAGATCGTCGGCGCCGGCGCGGTGCCGGCGCTCGTGGAGCTGCTGC
TGGACGAGCCCGAGCGGCGGGTCTGCGAGCTCGCGCTGGCCGTGCTGGACCGGCTGTGCACGTGCGCCGAGGGGCGCGCC
GAGCTGGTGGCTCACGCGGCGGGGGTGGCCGTGGTGGGCAAGAAGGTGCTGCGGGTGTCGGAGGCGGCCAGCGAGCGGGC
GGTGCGCGTGCTGAGGTCCGTCGCGCGGCACGCGGCGACGCCGGCCGTGCTGCAGGAGATGGCGCAGGCCGGCGTCGTGG
GCAAGCTGTGCCTGGCGCTGCGGTCCGAGCTGTGCGGGGTCAAGACCAAGGAGAAGGCGCACGAGGTGCTCAAGCTGCAC
TCCAGGATCTGGAGGAGCTCACCGTGCTTGTCTCCCAAGTTCTTGGCGCTCTACCCTTCGTGA-----------------
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>chr3D_1_TraesCS3D01G370000
CGCGATTCCCTATGCTCCTGCCTATTCGTACAAATATGTTAACCTCTGCAATTTTCCAGGTCAACCGTTCGATCGAGCCT
CCCCACTCTGGCAAGTTACCAATCGCATCCCATCCCATGCAGGCTCACTTTGCGCAAAGGGGGCTGAGCTTGTAGACATT
TCAGGAACCACACACATGGGGGATTTCCGGCAAAATTGGAACTACCGGTAGGAGTTTTCTGAGCTGCCGATGGGGGTT--
-------------TACGGATGGAACTCGATCTCTCGGAGGTCCTGCACCAAGC-AATCGGTGGTGTGTCAAACGTTAAGA
TCGTGCTAC-----AGCCAGCTCGGTAGGACTGGATCAGCTTGCGCACGCACCTGGCCAGTCAAAGCTAGCTCGCGGTGG
TG-AAGGAAAAGTCGAGGCCGCCAATGGGAGCTGCCATCTATCTATGGACACCACATGTTTCACAACCGTCGCCTACTTT
TCCAACGTGAAGGTGAAGGCCGGAGAAGC---GAAGCGAGAGGAGAAACCCAGCTACCGCGACGTTAACGCACGAACGCT
CCACAAAGTCAACTATCCAAAATGTCAAATGGAGGAGTAATTACGGACCTAATTTGGAAATAGTACA-AAGCGAGGGCCT
AGCACGTGAATGTGGCTCCACTCTGACCCGAGCCGCGAGCGACCAGTAAACAAAGGGCAGCCATGTGATG-----TGATG
CATGTGAA---CACCACTCACGACGAATCCCGACGCCTTAAAATAATCCAGAGGCAACAGCTGCCTCGGCAACCCGCGCC
----------CGCTCCGCTGGTCTTCTTCGTTCCAACTTCTTCTTCCAAAACCCACAGATAGCTAGCTCGCTCGAATAAA
CTAGAGCTCCAGCTTGCGGACGCGCGCGCACCGGCCACGGGCTACCAACCGGCTTACTATATATCCCGCCCCGGCGCCCC
ACCGCCAT-TTCGTCAACCCGCGGCGCATTTCGTC-GGACGCGTCTAACCTGTTGCGGCCGAGCGAGCTAATCAACTCCG
GAGAAGATGTCAGCAGCCATGGCGGCGCCGAGCGCGCTCCCGGCCGAGGTGCCTTCATACTTCCTCTGCCCGATCTCGCT
GCAGCTCATGCGCGACCCGGTCACGCTGCCCACCGGCATCTCCTACGACCGCGCCGCCATCTCGCGCTGGCTCGCCGCGT
CCGCTGCGCCGGCCGCGTGCAGCACCAGCCAGCGCACCTGCCCCGTCACGCGCCAGCCGCTCGAGCCGGAGCTCCAGCTC
ACGCCCAACCACACCCTCCGCCGCCTCATCGGCTCCTGGGTCGCGTCCGTCTCCCCCGGCTCCGACGTCGAGGGGGAGGT
GGCCGCGCTGAGGCCCGTGCGCCGGGACGAGCTCGCGAAGCTGCTCTCCGACGCCGCCGCGGCCCAGGTCGGCGCGCTCA
GGAAGCTGGGGGAATTGGTGGCCGAGTGCGAGGACACGAGGGCAATGCTCGAGTCCCAGGATGGCGTGTTCGACGCGCTG
TCTCGTGTCCTCACCGGCGCCAGCGCTTGCTCCACTGCGCGGGAGGAGGCCGTCGGGGTCCTCTCGTCGCTCCGGATCCC
GGAGCAGGAGCTGGTCCGCGTCGTGTCCAGGCACGGCAACCTGGCGGAGTCCCTCACGGCCGTGCTCCGCTCGTCCAACC
TACAGTCGCGGGCGCAGGCCGTGCGGCTCGTGAGGTCGCTGGCCGACGTCTCCGTGCCGGCCTGGGTCATCGGGCTCAAC
CAGGAGCTCCTCGCCGAGGTGATCCGCGTGGTCCGCGACCGCGTCTCGACGCGCGCCACTAAGGCGGCGCTCCACGCGCT
CTCCGCGCTCTGCCCGTACGGCCGGAACCGCGTCAAGATCGTCGGCGCCGGCGCGGTGCCGGCGCTCGTGGAGCTGCTGC
TGGACGAGCCCGAGCGGCGGGTCTGCGAGCTCGCGCTGGCCGTGCTGGACCGGCTGTGCACGTGCGCCGAGGGGCGCGCC
GAGCTGGTGGCTCACGCGGCGGGGGTGGCCGTGGTGGGCAAGAAGGTGCTGCGGGTGTCGGAGGCGGCCAGCGAGCGGGC
GGTGCGCGTGCTGAGGTCCGTCGCGCGGCACGCGGCGACGCCGGCCGTGCTGCAGGAGATGGCGCAGGCCGGCGTCGTGG
GCAAGCTGTGCCTGGCGCTGCGGTCCGAGCTGTGCGGGGTCAAGACCAAGGAGAAGGCGCACGAGGTGCTCAAGCTGCAC
TCCAGGATCTGGAGGAGCTCACCGTGCTTGTCTCCCAAGTTCTTGGCGCTCTACCCTTCGTGACGATCAATGTCTCACGA
CTCCGGTCCCACTCATCAGAATGCTCAGCTGTTGATTCATTCTTTTTCTTTGTGTTGTTGTTACCTGTTCTTTC--AAAA
TTAC-TTGGATCCTGAGGGCACTGGTTCGTGCCAACAAAAGAGAAATACATCGACACCGAGCTTTTTTGGTTGCTTACTT
ATTCTTTGGAGAATGATCCCATCTCTTTCCTCAGAG----ATGATTTTGCCATGTTTGATGCTTAGTGGATTTT-----T
TGCGGACGATGCTTCGGTGCCTTAGCACCTACCTTTGTGTCTATGACATGTGGGCCCAACAAGTGGCTGGCCCACATGTC
AGTGACCCAAAGGCAGGTGCCTTTAAGGCACCGAAGCTGCATCCATTTTTTACTCATGACTAGTGATCTGATGGTGTGGA
GTGACCATAAGCCTTTCTATTA--AAAAAAACTGTGCAAATGCTGACACTCGTGTAAATGTACGAACACTCATCTTATGA
AC-TATGCAAGCAGACCTTGCCCCGATGAGCACCTCTAAAAGACTAAACCGCA-AATCTTGAGATTCACGAACTTAACAC
ATGAGCCTCGTAGTTGACGAGAACCTTGTCTCCTTGAAAGGAATGAACACTAAAAAAATTGAAATAAATCCAGGAAAATA
CAAACACCCATGCCAAGTCTAGATTTTGAAGCCGGGTGGATTGACCTTATGATTGTCAGGCCATCTACAATG-CGTCCCC
TAAAACGGACACACTATCTGTCAGGGGACTCGTCCACGAGCGCGGATACAGGAGCCAGCCATCCAACCGCATTCCCTAAA
CGTCCGACATGGTCCGACCTCTTTCATTCCAAATGCATAGCAATATGAGCAAATTAAAGTGCGGTGTTTCATAGCGCCCG
ATCACAACCAAAAAGAGGTGCATCTCCATAGTTTTTACATGCGCCTGATCACAAACGTTT-CAGTTCAGTGGTCCATGCA
AAACGGCATTTTTGCATTCCCATTGAGATCCAACTCGTCCA
>chr3B_15
--------------CTCCTGCCTATTCGTACAAATATGTTAACCTCTGCAATTTTCCAGGTCAACCGTTCGATCGAGCCT
CCCCACTCTGCCAATCTGCCAATCCCATCCCGTCCCATGCAAGCCCCCTTTGTGCAAAGGGGCCTGAGCTTGTAGACATT
TCAGGAACCACTAGGGGTTTTTCC-----GCAACATTGGAACTACCGATAGGAGTTTTTTGAGCTGCCGATAGGAGTTCA
GAGTTTTTTGAACTACGGATGGAAC----TCTCTCGGGGGATCTGCACCAAGCAAATCGGTGGCATGTCAAACGTTAAGA
TCGTGCTACAGCCAAGCCAGCTCGGTAGGACTGGATCAGCTTGCACATGCACCTAGCGAGTCAAAGCTAGCTCGCGGTAG
TGAAAGGAAAAGTCGAGGCCGCC-ATGGGAGCTGCCATCTATCTATCGCTACCACATGTTTCACAACCGTCGCCTACTTT
TCCAACGTGA------AGGCCGGAGAAGC---AAAGCTAGAGGAGAAACCCAGCTACCGCGACGTTAACGCACGAACGCC
CCAGAAAGTCAACTATTCAAAATGTCAAATGGAGGAGTAATTACGGACCTAATTTGGAAATACCACA-AAGCGAGGGCCT
AGTCCGTAAACGCAGCTCCGCTCTGACCCGAACCGCGAGCGACCAGTAAACAAAGGGCAGCCATGTGATACTGTATGATG
CATGTGAA---CACCAC-CACGACGAATCCCGACGTT---AAATAATCCGGAGGCAACAGCTGCCTCCGCAAGCCGCGCC
CCCGCCCGCCCGCTCCGCTGGTCTTCTTCGTTCCAACTTCTTCTTCCAAAACCCACAGATAGCTAGCTAGCACGAATAAA
CTAGAGCTCCAACTTGCGGACGCGCGCGCACCGGCCACGGGCCACCAACCGGCTTACTATATATCCCGCTCCGGCGCCCC
ACCGCCAT-TTCGTCAACCCGCGGCGCATTTCGTCCGGACGCGTTTAACGTGCTGCGGCCGAGCTA-CTAATCAGTTCCG
GTGAAGATGGCAGC---CATGGTGCCGCCGACCGCGACGCCCGCCGAGGTGCCGTCCTACTTCCTCTGTCCGATCTCGCT
CCAGCTCATGCGCGACCCGGTCACGCTGCCCACCGGCATCTCCTACGACCGCGCCGCCATCTCGCGCTGGCTCGCCGCGT
CTGCTGCGCCGGCCGCGTGCAGCACCAGCCAGCGCACCTGCCCCGTCACGCGCCAGCCGCTCGAGCCGGAGCTCCAGCTC
ACGCCCAACCACACCCTCCGCCGCCTCATCGGCTCCTGGGTCGCGTCCATCTCCCCCGGCTCCGACGTCGAGGGGGAGGT
GGCCGCGCTGAGGCCCGTGCACCGCGACGAGCTCGCGTCGCTGCTCTCCGACGCCGCCGCTGCCCAGGTCGGCGCGCTCA
GGAAGCTGGGGGAGTTGGTGGCCGAGTGCGAGGACACGAGGGCAATGCTGGAGTCCCAGGATGGCGTGTTCGACGCGCTG
TCTCGTGTCCTCACCGGCGCCAGCGCTTGCTCCACGGCGCGGGAGGAGGCGGTCGGGGTCCTCGCGTCGCTCCGGATCCC
GGAGCAGGAGCTGGTCCGCATCGTGTCCAGGCACGGCAACCTGGCGGAGTCCCTCACGGCCGTGCTCCGCTCGTCCAACC
TGCAGTCGAGGGCGCAGGCCGTGCGGCTCGTGAGGTCCCTGGCCGACGTGTCCGTGCCGGCCTGGGTGATCGGGCTGAAC
CAGGAGCTCCTCGCCGAGGTGATCCGCGTGGTCCGCGACCGAGTCTCGACGCGCGCCACCAAGGCGGCGCTCCACGCGCT
CTCCGCGCTCTGCCCGTACGGCCGGAACCGCGTCAAGATCGTCGGCGCGGGCGCGGTGCCGGCGCTCGTGGAGCTGCTGC
TGGACGAGCCCGAGCGGCGGGTCTGCGAGCTCGCGCTGGCCGTGCTGGACCGGCTGTGCACGTGCGCCGAGGGGCGCGCC
GAGCTGGTGGCGCACGCGGCGGGCGTGGCCGTGGTGGGCAAGAAGGTGCTGCGGGTGTCGGAGGCGGCCAGCGAGCGGGC
GGTGCGCGTGCTGAGGTCCGTCGCACGGCACGCGGCGACGCCGGCCGTGCTGCAGGAGATGGCGCAGGCCGGCGTCGTGG
GCAAGCTGTGCCTGGCGCTGCGGTCCGAGCTGTGCGGGGTGAAGACCAAAGAGAAGGCGCACGAGGTGCTCAAGCTGCAC
TCCAGGATCTGGAGGAGCTCACCGTGCTTGTCTCCCAAGTTCTTGGCGCTCTACCCTTCGTGACGATCAATGCCTTCCGA
CTCCCGTCCCGTTCATCAGAATGCTCAGCTGTTGATTCATTCTTTCCC--TGTGTTGTTGTTACCTTTTCTTTTTTAAAA
AAAA-TTGGATCTGGAGGGCACTGGTTCGTGCCTACAAAAGAGAAATACATCGACACCGAGCTTTTTTGGTTGCCTACTT
ATTCTGTGGAGGATGATCCCATTTCTTTCATCAGAGATAAATGATTTTGCCATGTTTCATGCTTAGTGGATTTT-----T
TTG-----------------------------------------------------------------------------
----------------------------------------------------CTCATGACTAGTAATCTGATGGTGTGGA
GTGACCATAAGCCTTTTTTCTTAGAAAAAA-CTGTGCAAACGCAGACACTCGTATAAATGTACGAACACTCACCTTATGA
ACGTAAGAAGGCAGACCTTGCCCTGATAAGCACCTCTAAAGGACTAAGCAGACCAACCTTGAGATTGACGAACTTAACAC
ATGAGCCTTGTAGTCAACGAGAACCTTGTCTCCCTGGAAGGAATGAACACAAAAAAGATTGAAATAAATCCAGAAAAATA
CAAATACGCATGCCAAGTCTAGATTTTGAAGCCAGGTGGATTGACCATATGATTGTCAGGGCATCTCCAACGCCGTCCCC
TAAAACATACACAGTATCTATCAGCGGACTCATTTGCGGACACGGATACGAAAGCCGGTCATCTAGCCGCATTCCCTAAA
CGTCCGCCCAAGTCCGACCTCTTTCATATCGAATGCATAGCAAGATGAGCAAATTAAAGAGCGGTCTTTCATAGCGCCCG
ATCACAACCAAAAAGAGGTGCATCTCCATAGGTTTTACATGCGCTTGATCACAAAAAGTTCCAGACCCGTAGTCCAGCGA
AACAACAATTGTTGCCATCCCA-------------------
>chr3A_380
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TG-AAGGAAAAGTCGAGGCCACC-GCGGGAGCTGCCATCTATCTATCGCCGCCACATGTTTCACAACCGTCGCCTACTTT
TCCAACGTGAAGGTGAAGGCCGGAGAAGCGAAGAAGCGAGAGGAGAAACCCAGCTACCGCGACGCTAACGCACCAACGCC
CCGCAAAGTCAACTATCCAAAATGTCAAATGCAGGAGTAATGACGGGCCTGGTTTGCAATTTCGATACAAGCGAGGGGCT
AGCACGCAAATGTGGCTCCGCTCTGACCCGAGCCACGAGCGACCAGTAAACAAAGGGCAGCCATGTGATG-----CGATG
CATGTGAACGCCACCACTCACGACGAATCCCGACGCCTTAAAATAATCCGGAGGCAACAGCTGCCTCCGCAACCC-----
--------------CCGCTGGTCTTCTTCGTTCCAACTTCTTCTTCCAAAACCCACAGATCGCTAGCTAGCGCGAATAAA
CTAGAGCTCCAGCTTGCCGACGCGCGCGCACCGGCCACGGGCCACCGACCGGCTTGCTATATATCCCGCTCCGGCGCCCC
CACAGGCACTTCGTCAACCCGCGGCGCATTTCGTC-GGACGCGTCTAACCTGTTGCGGCCGGGCGAGCTAATCAGCTCCG
GAGAAGATGGCAGCAGCCATGGCGGCGCCGGGCGCGCCCCCGGCCGAGGTGCCGTCCTACTTCCTCTGCCCGATCTCGCT
GCAGATCATGCGCGACCCGGTGACACTGCCCACCGGCATCTCCTACGACCGCGCCGCCATCTCGCGCTGGCTCGCCGCGT
CCGCTGCGCCGGCCGCGTGCAGCGCCAGCCAGCGCACCTGCCCCGTCACGCGCCAGCCGCTCGAGCCGGAGCTCCAGCTC
ACGCCCAACCACACCCTCCGCCGCCTCATCGGCTCCTGGGTCGCGTCCGTCTCCCCCGGCTCCGACGTCGAGGGGGAGGT
GGCCGCGCTCAGGCCCGTGCGCCGCGACGAGCTCGCGTCGCTGCTCTCCGACGCCGCCGCGGCCCAGGTCGGCGCGCTCA
GGAAGCTGGGGGAGTTGGTGGCCGAGTGCGAGGACACCAGGGCAATGCTGGAGTCCCAGGATGGCGTCTTCGACGCGCTG
TCTCGTGTCCTCACCGGCGCCAGCGCTTGCTCCACGGCGCGGGAGGAGGCCGTCGGGGTCCTCGCGTCGCTCCGGATCCC
GGAGCAGGAGCTGGTCCGCGTTGTGTCCAGGCACGGCAACCTGGCGGAGTCCCTGACGGCCGTGCTCCGCTCGTCCAACC
TGCAGTCGAGGGCGCAGGCCGTGCGGCTCGTGAGGTCCCTGGCCGACGTCTCCGTGCCGGCCTGGGTGATCGGGCTGAAC
CAGGAGCTCCTCGCCGAGGTGATCCGCGTGGTCCGCGACCGCGTCTCGACGCGCGCCACCAAGGCGGCGCTCCACGCGCT
CTCCGCGCTCTGCCCGTACGGCCGGAACCGCGTCAAGATCGTCGGCGCGGGCGCGGTGCCGGCGCTCGTGGAGCTGCTGC
TGGACGAGCCCGAGCGGCGGGTCTGCGAGCTCGCGCTGGCCGTGCTGGACCGGCTGTGCACGTGCGCCGAGGGGCGCGCG
GAGCTGGTGGCGCACGCGGCGGGGGTGGCCGTGGTGGGCAAGAAGGTGCTGCGGGTGTCGGATGCGGCCAGCGAGCGGGC
GGTGCGCGTGCTGAGGTCCGTCGCGCGGCACGCAGCGACGCCGGCCGTGCTGCAGGAGATGGCGCACGCCGGCGTCGTGG
GCAAGCTGTGCCTGGCGCTGCGGTCCGAGCTGTGCGGGGTCAAGACCAAAGAGAAGGCGCACGAGGTGCTCAAGCTGCAC
TCCAGGATCTGGAGGAGCTCGCCGTGCTTGTCGCCCAAGTTCTTGGCGCTCTACCCTTCGTGACGATCAATGCCTCCCGA
CTCCCGTCCCGTTCGTCGGAATGCTCGGCTGTTGATTCATTCTTTCCC--TGTGTTGTTGTTACCTTTTTCTTTTAATTT
TTTTTTTGGATCCGGAGGGCACTGGTTCGTGCCTACAAAAGAGAAATACATCGACACCGAGCATTTTTGGTTGCTTACTT
ATTCTTTGGAGGATGATCTCATTTCTTTCATCATAGATAAAAGATTTTGCCATGTTTCATGCTTAGTGGATTTTATTTTT
TTG-----------------------------------------------------------------------------
----------------------------------------------------CTGGTGACTAGTAATCTGATGGTGTGGA
GTGACCATAAGCCTTTTTTCTTAGAAAAAAAATGTGCAAACGTAGACACTCGTATAAATGTAGGAACACTCACTTTATGA
TAGTATGCAAACGGGTCTTGCCTCGATGAGCAC-----------------------------------------------
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>SNPs
SSSSSSSSSSSSSS------------------------------------------------------------------
----------S---SS-S------S------S---------S--S-S-----S---------S-----------------
-----------SSSSSSSSSSSSSSSSSS----S-------------S----------S------------S--S-----
-------------------------SSSS--------S--SS---------------------SS---------------
--------------------------------------------S--S------S--S--------------------S-
-----------------------S----------------------S-S-------------------------------
-------------------------------------------------------------------------------S
--------------------------------------------------------------SS----------------
-------S-----------S------------------------------------------------------------
-------------------------------------------------S-----------------S------------
--------------------------------------------------------------------S--S--------
------------------------------------------S--------------------------S----------
--------------------------------------------------------------------------S-----
---------S---------------------------S---------------S--S-----------------------
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------------------------S------------SS-----------------------------------------
-------------S-----------------------------------S------------------------------
-----------------------------------S---------------------------S----------------
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-S------S----------------------------S-----------------------------S--------S---
-----------------------------------------------------------S--------------------
------------------------------------------------S-------------------------------
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-----------S--------------------------------------------------------------------
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-------------------------------------------------S------------------------------
------------------------------------------------------------------------S---S---
----S-----SS---------------------------------SS-SS----------------S------S------
---S---------S-------------------S----------------------------------------------
-----------S----------S------S---------------------------S----------------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S---------------
----------------S-SS-S------------------S--S---------S------------------S-------
----------------------------------------S------S-S-SS---S---------S-------------
--------S-----SS-----------------S--S-------------S-----S----------------S------
----S--S-------------------------S------------S-------------S-----S---S---------
------SS-----S-----S----S------S-SSS--SS-S-------SSS----S-S----S-S--------------
------S-SSS----------------SS-S------------S---------------S-----S--------------
-------------------------------S------------S----------SSS------SS-S--S-----SSS-
--SSSSS---S----SS-----SSSSSSSSSSSSSSSSSSS
>forward_180
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TCAGGAACCACACACATGGG------------------------------------------------------------
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>reverse_1748
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-------------------------------------------------------------------CATCGGGCTCAAC
CAGGAG--------------------------------------------------------------------------
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>forward_189
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---------ACACACATGGGGGATTTCCG---------------------------------------------------
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>reverse_2210
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-------------------------------------------------GGAGAAGGCGCACGAGGT-------------
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>forward_1689
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---------------------------------------------------------------------CTCGTCCAACC
TACAGTCGC-----------------------------------------------------------------------
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>reverse_2631
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----------------------------------------------------------------------CCCACATGTC
AGTGACCCAA----------------------------------------------------------------------
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