>input_sequence_56188
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------------------ATGGAGGCGGCAGGGGATGGCTCCGTGGGCATGTTCCGAGCAACGCCGGATGCCGCCGCCGG
CATCGGCAGGTAACAACTGGATCAATCCCCACCACTCACTCCCCTTTCTGATTCCGTTCCGTCCGTCTCTGCTTCCGCGT
CCCCGGCGCCTTCTATCTCTCCT-------TCGCCGGCGGCGCCTAGCCTAG----------------------------
---------CGCCGAAACCGGTCGAGGTTCTGGGTCGCCGCCCGCTCCCGCCTCCGCCCCTTTGCCGCGCCCTCCTCATT
TTCCACCACCCGCCCGCCCAGCATGCCGTAGCTGCGCCTCCGCTAGGCCGCAGATCGTCGTATCTGCCTTCGCCGCGCCG
AGCAACTAGGCCACCTCTCCGCGCGTGCCCGCCGGCCTGCCTCCCCCCTCTCGCCTCGCCGTGCCGCCGGACTATCGCCG
CAAGGATCAGTAGGTGCGGCAGGACTACCCCCCAACCACACAC-------------------------------------
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-----------------------ACACACAACTAGTACTACAATTATGCTAATTTTTTACAATCAGTACTAGAATTATGC
AATTTGAGTCATCTCAAATGGTTCTTAACAATGCGAC-------CCATCGAACAGATCTGCTGAGGTTGCTGCTCTCCTG
AACAAGATGGTGGATGGCCTGGGAGCAACGGTTCTGGACATCCCCGGGAGCCACGAATTCACAGTCCATCCATCAACTCA
CCTTTTGATACAAGCCCTGCAGAATTACTCCCGCAACACATATTTGGTGGAGCC---AGTGCATCACGCCACTGACCCTT
GCGCTCACATGGTCGATTGCTGGGCAGCCAAGCTCGAGGAAGATGCAGAGATGATACGCCAAGGCGAAAAGGGTGTGAAA
TACATATTCCTTATGAACAACACATGTCTTGTTTTGCAAATGATGGGGCGTCCAGGAGCAGCATCTTTCGCCGGTGCTCA
AGAATTGGCGAGTAGGCTCACATCAATGGTGGAGCTGTACAAGAAGTGCTACTTGGACGAGTGTTGGGCTCCTCTGCATC
GCTTAAACTCGGACATGTTTGCTGCTGAATTTCGCGCCACCTGTGACTGCCAGTCGACATGGAAGGTCGGAGCTGAGCTC
AGGTACCACCTGCGGCAGGAGATTGTGGATTTCGTTGTTCCGCCGTATGAGGCGTCCTTGTCTGACCGAAGCGCATGTCC
AGGGCCGTCCTTTTCGTTGAAACGAATGGTGTTCGGAGGGAAGAAACAA---AAGAGGTATGATACTGGTGCCCAACTGG
AAGGGAAGATAAGAGGATTGTTTGAGGGATGA------------------------------------------------
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>chr2A_1_TraesCS2A01G029400
GTTTTCTCAGAGAAAATTGAAAAATGCAGCGTCACTAAAGTTATGATTTGGCCGGGCTAGTGCTCCCTCCGGTCCTTTTT
AGTTCGCATATAAGAATTGTTTAAAGTCAAGCCTCGTAAAATTTGACCAACTTTATAAAAAAAATACACAATATGATATC
AATATAGCTAGATGTGTCATGACTTAAATTTTTATATTGTATAACTTTAGCATGGTAGGTGCTAATATTTTTTCATATAT
ATATATGGTCAAACTTTATGAAGTAAAAAGGACCGGTGCGAGTACTTCCTTCCCGCCCTATGTCTCTGTCTGTCTATCTC
ATGTGCGTGCGCGGGCGAGCGATCGGCAGCGACGTCGACCTAAGCGGGGCAGGCGTCGAGACGATCGGCAGCGACGGGGA
TCTGGTGGGTAGCGTGCGCGTCGCCAAGGCGATACGTGCATGTGCGTGTGGTGGTGCAGGCACACATTAATGGGGACAGT
TTAGTCCTTTCACTAGCCCATGATATGGAAGAAAAGAGAAATAAATATAAAAGAGGCGCTGATGGCATGATAATCACGGT
GTGAACGATCAAAGTGGCAATATCCTACGGTCATGGACATAGTTGGGAACTTGGAAAGGACGTAGGTACCCTTTGCAACC
CGCCACGTGCCGACGTGCGGGCGCGGT-----------------------------------------------------
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-----CGAACCCGTGGCGCTGCGCATCCACGCCGCCGTGGTGGGTCCGCCTGGCGCACGGCAGGAGCGGAGATTTCGCAA
ACGAGAGACGCCGTTCCGCGTCGTCGTCCGGTGTCTCCATCAGCCGGGCCTTATAAACGCAAAAGCGCCCCCGCGGCAAG
CCCCATCAACGAGTCACACCTGCCTACGGAATTGGAAGCCCGCCGCCGGGAAGGTCGCCGTCCCTTTCGCTCGCGCGCTT
CCACTCCGGCGCGGGAGAGACCGAAGCAGGGGCATCGGCGGCGGGGGCGTCGACGACGGCGCGGAAGCAAGCCGGCCGGG
CTCAAGTGCTGGACCAAGATGGAGGCGGCAGGGGATGGCTCCGTGGGCATGTTCCGAGCAACGCCGGATGCCGCCGCCGG
CATCGGCAGGTAACAACTGGATCAATCCCCACCACTCACTCCCCTTTCTGATTCCGTTCCGTCCGTCTCTGCTTCCGCGT
CCCCGGCGCCTTCTATCTCTCCT-------TCGCCGGCGGCGCCTAGCCTAG----------------------------
---------CGCCGAAACCGGTCGAGGTTCTGGGTCGCCGCCCGCTCCCGCCTCCGCCCCTTTGCCGCGCCCTCCTCATT
TTCCACCACCCGCCCGCCCAGCATGCCGTAGCTGCGCCTCCGCTAGGCCGCAGATCGTCGTATCTGCCTTCGCCGCGCCG
AGCAACTAGGCCACCTCTCCGCGCGTGCCCGCCGGCCTGCCTCCCCCCTCTCGCCTCGCCGTGCCGCCGGACTATCGCCG
CAAGGATCAGTAGGTGCGGCAGGACTACCCCCCAACCACACAC-------------------------------------
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-----------------------ACACACAACTAGTACTACAATTATGCTAATTTTTTACAATCAGTACTAGAATTATGC
AATTTGAGTCATCTCAAATGGTTCTTAACAATGCGAC-------CCATCGAACAGATCTGCTGAGGTTGCTGCTCTCCTG
AACAAGATGGTGGATGGCCTGGGAGCAACGGTTCTGGACATCCCCGGGAGCCACGAATTCACAGTCCATCCATCAACTCA
CCTTTTGATACAAGCCCTGCAGAATTACTCCCGCAACACATATTTGGTGGAGCC---AGTGCATCACGCCACTGACCCTT
GCGCTCACATGGTCGATTGCTGGGCAGCCAAGCTCGAGGAAGATGCAGAGATGATACGCCAAGGCGAAAAGGGTGTGAAA
TACATATTCCTTATGAACAACACATGTCTTGTTTTGCAAATGATGGGGCGTCCAGGAGCAGCATCTTTCGCCGGTGCTCA
AGAATTGGCGAGTAGGCTCACATCAATGGTGGAGCTGTACAAGAAGTGCTACTTGGACGAGTGTTGGGCTCCTCTGCATC
GCTTAAACTCGGACATGTTTGCTGCTGAATTTCGCGCCACCTGTGACTGCCAGTCGACATGGAAGGTCGGAGCTGAGCTC
AGGTACCACCTGCGGCAGGAGATTGTGGATTTCGTTGTTCCGCCGTATGAGGCGTCCTTGTCTGACCGAAGCGCATGTCC
AGGGCCGTCCTTTTCGTTGAAACGAATGGTGTTCGGAGGGAAGAAACAA---AAGAGGTATGATACTGGTGCCCAACTGG
AAGGGAAGATAAGAGGATTGTTTGAGGGATGAGCGATCTCCTCCCCTCTCCTGTCATCATCTTGATTGTTGCACCCATGC
ATGTATATCTTTCTCTCTTTGGAAAGG---GTTCGTTCTGTAATGCTATGCGTTAGATGCCATTGTCA------------
-------TGATAGTTTTAGTCTTTTAGAGACTAGACTAGAATTGTGCTTGCCAAGCCGTTTTTGTTGGAAACCTTCATAC
GTGTATGTTTGACATGCATGTATGGCTCATCGGTGGCAAGTTGGAATATTAATGAAATTGATCACACACACTCTTCTCAT
GTACT----GTATGATTTTCTTTCCTGTGCATTTTCCCTCCTCCGAGTTGCTCTGCAGATATTGTTCCACCATTTGTCC-
-----TAGGAGTCGAACCGTTTTTATCAGTACTTTGTCCAATTAGTTTTTGGAGAACGGAGGTCTCGTTCGCTGCTATTT
TAAT---GATGAGAAGAATCAAATAAATCAACTTGTCCTAGGCTAGCGCAACTCTGTCCGGCGGTCCGGTTTCCTTCTGG
ACTGGGCGGGTCAGATGGAAGATTTGATCTGTATTACAGCAGAAGCCAAAGACATTCTTAGAGCAACTACAATGGGAGTA
CCCATTTTGTCCGTCGCCGACCCAACAAAAACGACGGCCAACGCATAGACCCTTTTTTTTTTATCCGCTTCGTGTTCGCG
CAGACCCATTTTCAGCCTAAATTTAAGACATATTTGGGTCCAAAGCGGACGCTTTCTGCGTCTCTCTCGTCCGCCTCCGC
ATGCTGCCGGTCCCGCATGGCCCACCTGTCATCCACTCACAGAATACCTTTTCTCTCGCCCCTCTCTCTCGCGCTAGCCA
TGGCACAGGTGCTGCCACGCCGCCGCGCTCGCCTTCTCGGACGCCGCCGTGCTGCCGCGCTCGTCCTGCCGGGGGGCAGT
ACAAGCATCCACGCGAGCTAGCTAGCTTAGTTGCATGGATGCCGGCCTGTGCATGGCGCCCCATGCTTGCTAGCTTCGAT
GTATTGTGGGCGCCGGCTCGTGGTGGC
>chr2B_509
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----------------------------AAGAAAAGAGAA--AAATATAAAAGAGGTGCTGATGGCATGATAATCACGCC
GTGAACGATCAAAGTGGCAATATCCTACGGCCATGGACATAGTT---------GAAAGGACGTACGTACTCTTTTCAACG
GAAAAAGTCCATTTTAAACCCTGAACCCGTAGAGGTTCGGCGAAACGAACCCTCGAGTCAAAATCTCGGTCGATTGCACC
CTGAACTCTGTAATCTCGGTCTAAATCAAACCTTCGGGTCGTTTGGATGGCCAGGATTGGTGGCATTTCGCAGAGGGCAT
ACACCTGCTTCCAATTCCGTAGGGAGGCTTCCAATTCCGTAGGGAGACGTACGTACCCTTTTCAACGGGAGCTGGGCAGC
TGGGCCGAACCTGTGGCGCTGCGCATCCAAGCTGCCGTGGTGGGGGCGCCCGGC-CACGGCACGAGCGACG---------
---------------CCTCGTCGTTGTCCGGTGTTTCCATCAGCTGGGCCTTTATAAAC----AGCGCCCCCACCGCAAA
CCCCATCAACGAGTCACACCTCCCTACGGAATTGGAAGCCCGCCGCCGGCTGCCGCTCCGCCCCTTTCGCTCGCGCGCTT
CCAC--CGGCGCGGGCGAGGCCGAAGCAGGGGCATCGGCGGCGG---CGTCGGCGGCGGCGCCGAAGCAAGCCGGCCGTG
CTCAAGTGCTGGACCAAGATGGAGGCGGCAGGGGATGGCTCCATGGGCATGTTCGGAGGAACGCCGGATGCCGCCGCCGC
CATCGGCAGGTAACAAATGGATCAATTCCCACCACTC-------------------------CCCTCTCTGCTTCCGCGT
TCCCGGCGCGTTTTATCTCACCGCCCCCCCTCGCCGGCGGCGCCTAGCATAGAGTAGAATCGAGCCCAATCGCGGCGGAG
TCGAAGGAACGCCGAAACCGGTCGAGGTTCTAGGTCGCCGCCCGCTCCCGCCTCCGCCCCTTTGCCGCGCTCTCCACAC-
TTCCACCACCCGCCCGCCCAGCATTCCATAGCTGCGCCTCCGCCAGGCCGCGGATCGTCGTACCTGCGCGCCCGCTGCTG
CCGCAGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGG
ACTAGCCGGCGGGCGAAATGACTACCCACAACCAGTACTAGAATTATGCTAATTTTTTACAAACAGTACTAGAATTATGC
AATTTGAGTCATCCCAAATGGTTTTTAACAATGCGATGGACCTGCCATTGAACAGATCTGCCGAGGTTGCTGGTCTCCTG
AACAAGTTGGTGAATGGTCTGGGAGCAGCAGTTATGGACATCCCC---AGCGACGAATTCACAATCCATCCATCAACTGA
CCTTTTAATACAAGCCCTGCAGAATTACTCTTGCAACACATATTTGGTGGAGCC---AGTGCATCACACCACTGATCCTT
GCTCTCACATGGTCGATTGCTGGGCAGCCAAGCTCAAGAAAGATGCAGAAATGATACGCCGAGGTGAAAAGGGTGGGAAA
TACATATTCCTCCTGAATAACACATATGATGTTTTGCAAATGCTGCAGCCTCCAAGT---GCCTCTTTCGCCGGTGTTGA
AGAATTGGAGAGTAGGCTCACATCAATGGTCGAGCTGTACAAGAAGTGCTACTTGGATGAGTGTTGGGCTCCTCTGCATC
GCTTAAACTTGGACATGTTTGCTGCTGAATTTCGTGCCATCTGTGACTGCCAGTCGACATGGAAGGTTACGGCTGAGCTC
AGGTACAAACTGCGGCAGGAGATTGTGGATTTCGTTGTTCCACCGTATGAGGTGTCCTTGTGTGATCGAAGCGGAGGTTC
GGGGCTGTCTTTTCCGCTGAAACGACTGGTGTTCGGAGGGAAGAAACAGAAGAAGAGGTACTATACTGGTGCCCAACTGG
AAGGGAAGATAAGAGGATTGTTTGAGGGATGAGCAATCTCCTC-----TCCTGTCATGATCTTGATAGTTGCACCTGTGC
CTGTATATCTTTCTCTCTTTGGAAAGGTGGGTTCGGTCTGTAATGCCATGAGTTAGATGCCATTGTCATGCTGCAGTTGC
CGTGATGTGATAGTTTTAGTCTTTTAGAGACCAGAGTTGTGG-----TTGCCAAGGCGTTTTTGTTCGAAACCTTGATAT
GTGTATGTTTGA----CATGTATGACTCATTGGTTGCAAGTTGGAATATAAATGAAATTGATCACACACACTATTCTCAT
GTACTAGTAGTGTGATTTTCTTTCCTCTGCATTTTCTGTCCTCCGTGTTGCTCTGCAGATATTGTTTCTCGGCCACCATT
TAGTGTAGGCGTCGAACCATTTTTATCAGTACTTTGTCCAATTAGTTTCTGGGGAACGGAGGTCTCGCTCGCTGCTATTT
TAATAACGAAGAAAAGAATCAAATAAATCAACTTGTC-TAGGCTCGCGCAACTCTGTCCGGCTGT---------------
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>chr2B_1561
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-------------------------------------------------GAACAGGTCAGCTGAGATTGCCGGTATTTCC
AACAGGATGGTGAATGATTGGGAAGGAATAGTCCTCGACTTCCGCAGTAGCGACGAATCAACAATTCATCCAGCAAATGA
CCTCCTCGTACAAGCCCTGCAGCATTATTTTGGTGACACATACTTGGCGCAGTCAGTAGTACAACACACCACTGAACTTT
GCTCTCACATGATTCGTCTCTGGCGATCCAAGCTGGAGCAAGACGCAGAATTGATACACCCAGGTGAGAAGGGTCGAAAG
TACATATTTCTCTTAAATAACACATACGTTGTTCGTCAAACGGTGTCGCGTCAAGGAGCATATTTTCCCAAAGT------
AGAACTGAGGAGTCGGCTCAGTTCAATGATCGAGGGATACAAGAAGGGCTACTTGGACGAGTGTTGGGCTCCTCTGAACC
GTTTAAAATCGGAGGAGTTTACGGCCGAATTTCTTGCCACCTGTAATCGCCAGAGGACGTGGAAGGTTACAGCTGAGCTC
AGGTACCAACTGCGGCAGGAGATTCTGGATTTGGTTGTT-----------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS------------SS--------------S---------------------SS
------------------------------S-------------SSSSSSSSS-----------S----S----S----S
SSSS-S--S-SSSSSSSSSSSS-SSSS-----------------------------------------------------
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-----------S-----------------S--S-----------SS----S---S-------S-----SS-SSSSSSSSS
SSSSSSSSSSSSSSS--S------S---------S---------S-------SSS--SSSSSS---------S-S----S
---------------------S---------------------------SSSSSS-S---S-------------------
----SS---------S---S------------------------SSS-----S--S------S---------------S-
------------------------------------------S-----------S---S--------------------S
----------------S---------S----------SSSSSSSSSSSSSSSSSSSSSSSSS--S---------------
S--------S--S------S--S-------------------------S-------------------------------
-------------------------------S--------------------------------------S----S--SS
------------------------S--S---------------S-------S----------S----SSS-S-SSS--S-
SSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------
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-------------------------S------S-------S---------------------S-----------------
-------------S---------S------------S-----------S-----------------------S-------
------------S----S-----------S---------------S-S---S-----------S--------------S-
------S-----------------------SS-----------------------------------S-------S----
--S-----------------------------------S----------S----------S---S----------S----
-----------SS----S-------S-S--------------S--SS---------------S-------------S-S-
--------S---------------------S-------------------------------------------------
----------------------------------S--------------------------------SSS----------
--------S--------------------------------S----------S--------S---S-------S-S--S-
S----S---S---S--S--------S----------------------S-----------SS------------------
----------------------------------S--------SSSSS---------S--------S--------SS---
S----------------------------------S----------S---S-----------------------------
-------------------------------S---S-S-SSSSSSSS--------S----------S--------S---S
------------SSSS--------S-----S---S--------------S----------------------S-------
-----------S--------------S---------SS-------S--------------------S-S-SSSSSSSSS-
---------S--------S-----------------------------S---S--------------S------------
---------S--S------------------------S------S-----------------S--SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_444
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------------------------CAAGGCGATACGTGCATGTG------------------------------------
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>reverse_1670
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---------------------------------------------------------------------GACTATCGCCG
CAAGGATCA-----------------------------------------------------------------------
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>forward_1322
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----------------------CAATCCCCACCACTCACTCC--------------------------------------
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>reverse_2987
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--------------------------GTGCATTTTCCCTCCTCCGA----------------------------------
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