>input_sequence_56177
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--------------------------------------------------------AAACATCATGAAGCAGTCAAGGAA
GGAAAGCGGTCAGGAAGTCCCGGAGGAGTGCCTTGCGAAGGTCATCGGCCTGACCTCGCCTGCCGACGCCTGCCGCGCCA
CCGCGGTATCCGCGGCCTTCCAGTCGGCGGCAGACTCTGACGCCGTGTGGGAGAGGTTCCTGCCGCTGGACTGCGACGCC
GTCCTGGAGCGGGCCGTCCACCTCGTGGATTCCTCCTCCAAGAAGGAGCTCTTCATGGACCTCAGCGACGACCATGTCCT
CCTCGACGGCGGCAAGAGGGTGAGTGCCAAATTTCCGGTCATTCATGACGACAAAAAAAAAAAGATTATCGATTTGTCTA
ATTTGTTTCTTCGATAAAGTGGATCAGTACTGATTGATCGGATATACTATGCCGCATGGCTTCTAATTAACATTCTGCTG
GTTAATACGTCTTAATTAGAGTTTTGGGCTCCACCGATCGAGCGGCGCCAAGTGCTACATGCTATCTGTGAGTGAGATGG
GAATCGCTTGGGTTACAGCAGATCTGTACTGGATAAAGAGGTCGGACCCAGATTCAAGGTAATTAATTAACTCCCATATA
TACTACTGTACCTCTCAATCTCATACTATCTCAGAAATTGCTTGATTTATCCTTGCTTGACAATTAAGCTTAGGTTCTCC
AAGGTGGCAGAGCTCATGTCAGTGTGCTGGTTCAGCATCTCCGACCGCATCAGCAGCAAGGAGCTCTCACCGGGCACCCA
ATACGCGGCCTACCTTGTGTACAAGCTCACTCAGGACGCATCCGGTCTCAGCTCCCCACGGCAGATATCGTTCATTGAGG
TAGGTGGGCAGCTAGTTGGGAGCATCCACCCGGCGTCTCTCCATCCCTGCGACCGTTGTTCCTGCGCCACACGTGATGGC
GAGTCGTCATCGTCGTCGACGACGTCCACAACGAACGTTGCCGCCGTACAGGTGCACGAGCACATGAAGGATGAAGGAGG
CCTCATTGTCAGGTACCCGCGGCAACGGGTCGACGGCTGGTTGGAGTTCGAGATAGGTGACTTCCACACAGGTGGCGATT
TTCTTCCTTTTAAAACAATATGAAGTTTTTCCTTACTCTCACAGCCTCGGTATTTGATCGAGATGACCCATCACAGGTGA
TGAAGCCGCGGCTGCAGTAGACGTTTTGATGGTGCTGCAAGAGCTTGAGGAGCTGCAGTGGAAGAAGGGGCTCATCATCG
AAGGCATTGAGATAAGGCCGAGAAACTAAATAAA----------------------------------------------
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>chr5B_1_TraesCS5B01G560000
GTGGGGCGATGCGATTTCCTTCTCCCGGAGGATAGCCAGGGC--------------------------------------
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----------------------------------------------------------GACCGGGATTGAGGATACGGTG
AAGCGGAATTCCGAGGGCGAGAGTTGAAGGACCATGAACATGTCGGACTGATGACCGCCCAGGCAACCTTGGAGGTAGCA
TGCAAGCATGAGGCAATCAATCTCCATGACGGCACGCTCAATTTTGACAGCAAGGTGGATGCCTGAGTTTTTGTGGCGAA
ATAGAGTGATGGGCTGCAAGATGGCAGACCAAACCTGATCCTCAAAATCCGCACCCGTGGCGTTTCCAACGCCAAGCGCG
GCGCGAACGGCAGCCTGGATCGTAGAGTCATCCAGCCAGATGTCCGGCGGGAGCGGGGGCGAGGTGAAGGTGGCTACGGG
GAGGCTAGATGGAGTTGGGATCAGAGGTGACCGGAGTTGGGGCAGCGGTGGTGGAGGTGGAGGAGCGGCAGGAGGTGGGA
ACGGGGGCAGTGCGGGAGCGAGAGCCATCCTGGACTGAGGATTGTGAGGCCTCCAAGCCGACTTTCGAGGGGCTGCGATT
TGGTGTTAGGCAAAGCATACATCCCCTGGAATCTTAGAATGAAATCCATCGTCGATTCGCGGGCAGCCAAACGAGTAGAT
ATTGGATTTCGCAAATGAAATCCATCGATTGCAACCCAAATGATGGGTACCAAACAGGCTGCAAGGGTTTCCCTATTGGT
GGTAGTTAACTACTCCTTCCGTCCATGCATCCATTTTGATGACAAGTATTTCCGGACGGAGGGAGTATGTAGTTATGTAG
AAAACGACGACGTGCTGCCTTGAATTTGAAATACTACGTTTTTCTTAAATCATATTTCCCTCTTTATATACGATTCAATC
AGCGTCACATCACTTGAAAAGAGAGGGATGAGCTCGCCGGAGCCTCAACAAAAAAAAAACTATTAATAAGAACGGGGGCC
GGTAGTTCCATGACTTGGCCCATATATGGTGCGGCTGCATTCGTTGACCCGGAAGCAAACATCATGAAGCAGTCAAGGAA
GGAAAGCGGTCAGGAAGTCCCGGAGGAGTGCCTTGCGAAGGTCATCGGCCTGACCTCGCCTGCCGACGCCTGCCGCGCCA
CCGCGGTATCCGCGGCCTTCCAGTCGGCGGCAGACTCTGACGCCGTGTGGGAGAGGTTCCTGCCGCTGGACTGCGACGCC
GTCCTGGAGCGGGCCGTCCACCTCGTGGATTCCTCCTCCAAGAAGGAGCTCTTCATGGACCTCAGCGACGACCATGTCCT
CCTCGACGGCGGCAAGAGGGTGAGTGCCAAATTTCCGGTCATTCATGACGACAAAAAAAAAAAGATTATCGATTTGTCTA
ATTTGTTTCTTCGATAAAGTGGATCAGTACTGATTGATCGGATATACTATGCCGCATGGCTTCTAATTAACATTCTGCTG
GTTAATACGTCTTAATTAGAGTTTTGGGCTCCACCGATCGAGCGGCGCCAAGTGCTACATGCTATCTGTGAGTGAGATGG
GAATCGCTTGGGTTACAGCAGATCTGTACTGGATAAAGAGGTCGGACCCAGATTCAAGGTAATTAATTAACTCCCATATA
TACTACTGTACCTCTCAATCTCATACTATCTCAGAAATTGCTTGATTTATCCTTGCTTGACAATTAAGCTTAGGTTCTCC
AAGGTGGCAGAGCTCATGTCAGTGTGCTGGTTCAGCATCTCCGACCGCATCAGCAGCAAGGAGCTCTCACCGGGCACCCA
ATACGCGGCCTACCTTGTGTACAAGCTCACTCAGGACGCATCCGGTCTCAGCTCCCCACGGCAGATATCGTTCATTGAGG
TAGGTGGGCAGCTAGTTGGGAGCATCCACCCGGCGTCTCTCCATCCCTGCGACCGTTGTTCCTGCGCCACACGTGATGGC
GAGTCGTCATCGTCGTCGACGACGTCCACAACGAACGTTGCCGCCGTACAGGTGCACGAGCACATGAAGGATGAAGGAGG
CCTCATTGTCAGGTACCCGCGGCAACGGGTCGACGGCTGGTTGGAGTTCGAGATAGGTGACTTCCACACAGGTGGCGATT
TTCTTCCTTTTAAAACAATATGAAGTTTTTCCTTACTCTCACAGCCTCGGTATTTGATCGAGATGACCCATCACAGGTGA
TGAAGCCGCGGCTGCAGTAGACGTTTTGATGGTGCTGCAAGAGCTTGAGGAGCTGCAGTGGAAGAAGGGGCTCATCATCG
AAGGCATTGAGATAAGGCCGAGAAACTAAATAAATAAAATGATGATTATAGGTCCCTAACATATAATACCAGATATGTCA
GGGATTGGGGTGGCTTGCTAGGAAATTCATGTCACGCTTTGGATGTCGAGCAGGATCTAATTAATGTTTGCTTTTCAGAA
GTGTCCTGCTCATGAGTTTCCTTTATGGTGCAATATATATAGTTGTGTGCATCTATACAGCCAATATACTAAATAAACAA
TTTGCTGCCTACATCAGCTATCGATGGGTGGCAACAGATCTGATGTGTACCGAATGAAATGAAACGTTGTCCATATATTT
CGCCCGATGATCCAGTGCAAAACAGCCCATCATATCGATCCAGTAATTAGGTGATCAGCCTTATCATGTTGGTATATACT
CCCTCTGTTCCTGGAACGGAGGGAGTATTTTTTTTTTATGGTCACCCTAGGGAGCGATTCCGCACCGGAAAGTGCAGAGT
TTTCCGTTGATGAAAGCTGCAGCCAAGGTGGGTGAGGGGGTGGGAAGATAACACAACAACTACACACACAGTTCTCGACA
TGGTCTCGAGCATGGGCGGGATGGTGAACGAGCCATGCACACGCCCCATCTCTGCACATCTCAAGCATTTAGGGCATTTC
TGGGCGTTGATCGCGGAACACCCCATCCTTCCTTAGTACTTCTATGTTGCAACAACAGAGGAGGAGGAAAGTCAAAGCAG
AAGCTCGCGGCACCACTACGGGCGCCTCGTAGGTGTCGAGGAGGCGAACATCCGCAACTATCGGCCGGCGGCCACCTACC
CTGGTTCAGAGTCAACGGGCGAACGGTGCATCAGGATCCGCATAGATGGGGCACATGGCTTCAGCAGCAGAAAGGATCCC
TTTCCTGAGCCGCGACGAGCCCAAGAGATGGCCTTGTTCTTTGCGAGGAGCCACATCTCCGCATGTCCCACAGGGGACAT
ATGTATAGATAAAGGACGCGACTAACCACCAGCCGACTGGTGGTTAGCGACAAATCCGCACGATCGTACACCTG
>chr6A_3
--GGGGCGATGCGATTTCCTTCTCCCGGAGGATAGCCAGGGCGACTGTCAGAATAAATTTGAGGCATACCGTTGATCATC
CGAGGACCAAGCAATCACACGAGCACGACACCAAGATTTGTTAACGAGGTTCACCGATATGGCTACATCCCCGGGGCCTG
ACTATGGGCGCTCCTCCCCATGACACCGCTACAATACCGCACCCGGTCGCCCTGGACACCGGCACATGCCGCCGGCTTCC
CCTGCGTTCCGGTGCTATTATGTTGGCATAGGTTACATCGTGTGTCTACCCCCGCTATATAAGAGAGGCCTAGGATACAA
GTGTCCTACTAGGACACGACTACATATCCTATCTAAACACAATACAACTCAGAGTCCAACTATAACCTAACTTGTACACT
ATATTCGACACAACTCCAACAAACTCCACCTTGGCGAATATTCTCCACCACCTTGAATTCGTCAATGCGTCAAACTTCCA
TGTACATTGGACTTGAGCTTATCCCATGAGTACCGCCGCTACTCAAAAGACTCCATGTGACTCCACCTGCAACTTGTAGT
CCCTTCTTTTCTTGACCACAGTCAACACTCGAGCAAAATTAAGTTCCTTGTTACTCTAGTTTGTGCTCCAACTTCCAGAG
TATCAGTCCAACGCCATCACGCACTGATCACTGACCTGCATGAAAGTGAACAACTCACATATTGGATGTCACACATAAGA
GTTACCTGAACTCAACATCACCGCTCCTTTCTTGACCGTCTGTCTGAAACTTGAAGGAATTTCACAATTGCTTGTAATCA
TCCCGAGTCAAATTAGCAGTTGTCTCACCACATGTATGACCACCAGAGCCCTGGCCCGTCTCCACGTCCCGTGCATACCG
CACACCTCGCCGCTATTACCGCGTCGAGCCTCTGCAGTCCCGGTCGAGTCTCCAGGGTCGTGAACCCACACCACTCAGAC
CCCACTGCAGAGTACCACCGATCATCACCGACCGATGACGAGTTTCACGCTTTCATCAGACCACTGGGCTCCAGTCCGAA
TTACGTGTCACTCGCTTTTCCCGCTGAATAGGCTTCGACTCTCTGTCGACTTACGCCGTAGCCTCTCAATCCAGCTCCAC
CTTCAACATGACTCCATGGTAGATGATCAGTCCACCCCTGCGCCTCATCGACTTCAAGCTCCGTGTATACACCACCTTGA
ATCAATCCCGCGCCATAGTCTTGTCGAAGCCACACAAGCCCTCGGGCCTGCGCCACGTGTTTCCACGCCCCAGAAGTCGG
TCACCATCAGCATCACGCTCCTACGTCGTCATCGCGGATCCCACCACCGTCTTCTGTTCCAACCGACTTGCGTCGATCCG
CCAGACTGTCCAGTCCGACCCAGCCAAACTTGTTCGGCTACAACCATGCTCCACCTTGCACCATGACTGCTTGCACATCT
GTGCATATCTTGGACGCCATGTGTATGCATGATTCTGCCGCGACGCGCTCCAGACTCCTCCAAGCCCTATATGCCCGTCG
TTGTCCTTGCTGCACGCACACCCGAAAGCACTCACAACAAACTTGACTTAGCAGGAAAAACTTCCGTCCAAACAAAACAC
TATTTTTCCTTTTCCTTGTCCCTGTTTGCTTGTAGCCTCTCTTGTGTATGCACGAAGACCTTTTTCTTTTGTCCAAATTA
ACAAATCTCACGTGAGCTTGTTGGTGTGTTGCACATCGTATCTCCACGCGTAGACCACACTAGGCCTTGCCTGCACGTAC
CTGGGCAGCATCACCTCCACCTCACGGTTACACAAGGGCCTAGCCCACCAAGGAAGCACACGACCAGCCACATGTGCCAG
CCTGCCACGTCCTAGGCATGCCCACAAGCCGTGTTGGTTTCTGATCCCTACGAACGCACGAGCGCTCAAGTTGCTCCCCG
CCGCTTCGATCGATCCACTGCTACCCGCGCATCTCGCCGAAAGCAAATCCGATCAGCAAGACCTCCAACATACTCGTCTG
CTTCTGATTGCATCCAGATCATATCGCTGAACCACATCTCGTCGAATCATGTACGACGCCGCTGGCCCTTCCAGCCGCAC
GCCTGCTTGGACTGCGTAACCGCGTCCCCCGGCCAGACCGCACTTGGCCCAGCTGCCAGCTGCGTTGCCGCAGGCCACGT
CCTGACCTCGCCAACTTCGAGTATCTTTCAACTCGGCGTTGTTGATGCGATAGTGACGCCACGTCGTCTCTTCAGATCTC
GATGGCTGATTCTTCCACGATATTTTCACCGTTGATCAACACAATCCGCCCTGATCTTAAACCTTGCTCATGATACCACT
TTTCAGAATAAATTTGAGGCATACCGTTGATCATCCGAGGACCAAGCAATCACACGAGCACGACATCAAGATTTGTTAAC
GAGGTTCACCGATATGGCTACATCCCTGGGGCCTGACTATGGGCGCTCCTCCCCATGACACCGCTACAATACCGCACCCG
GTCGCCCTGGACACCGGCACATGCCGCCGGCTTCCCCTGCGTTCCGGTGCTATTATGTTGGCATAGGTTACATCGTGTGT
CTACCCCCGCTATATAAGAGAGGCCTAGGATACAAGTGTCCTACTAGGACACGACTACATATCCTATCTAAACACAATAC
AACTCAGAGTCCAACTGTAACCTAACTTGTACACTATATTCGACACAACTCCAACAGCGACCGGGATCGAGGAGACGGTG
AAGCGGAATTCCGAGGGCGAGAGTTGAAGAACCATGAACATGTCGGTCTGACCT---CCCAGGCAACCTTGGAGGAAGCA
TGCAAGCATGAGGCAATCGATCTCCATGGCGGCACGCTCGACTTTGGCAGCAAGGAGGATGCCTGAGTTTTTGTGGCGAA
ATGGAGTGATGGGCTGCAAGATGGCAGACCAAACCTGATCCTGAAAATCCGCACCCATGGCGTTTCCAACGCCGAGCGCG
GCGCGAACGGCAACCTGGATCTGAGAGTCAGCCAGCCAGATGTCTGGCGGGAGCGGGAGCGAGGTGAAGGTGGCTACGGG
GAGGCTAGACGGAGTTGGGAACAGAGGTGGCCGGAGTTGGGGCAGCGGTGGTGGAGGCGGAGGGGCGGCAGGAGGTGGGA
GCGGGGGCGGAGCGAGAGC-------------------------------------------------------------
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>chr5B_1040
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---------------AGTCCCGGAGGAATGCCTGGCGATGGCCATTGGCCTGACCTCACCGGCCGACGCTTGCCGCGCCG
CCGCGGTGTCCGCGGCCTTTCGGTCAGCGGCGGACTCCGACGCCGTGTGGGAGCGGTTCCTGCCGCCCGACTGCGACGCC
ATCCTGGAGCGGGCCGTCCACCTCGTAGACTCCTCCTCCAAGAAGGAGCTCTTCATGGACCTCAGTGACGAACATGTCCT
CCTCGACGATGGCAAAAGGGTGAGTGAGTGCTAGATTTCCTCGCGAC-----------AAAAAGATCATCGATTTGTTCA
ATCTGTTTCTCTGATGAAGTAG---AGTACCGATCGATCGGACATATGCAT--GCATGGCTTCTAATTTATGAC---CTG
GTTAATGTTCG----TTAGAGTTTTGGGCTCCAGCGATCGACTGGCGCCAAATGCTACATGCTATCTGTGAGCGACATGG
GAATCGCTTGGGGTCATACAGATCTTTACTGGAGAGAGTTGTCGGACCCAGATGCACGGTAATTAATT------------
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>SNPs
SS------------------------------------------------------------------------------
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-------------------------------------------------------------------S-----S------
-----------------------------S----------------S----SSSSSS------------------S----
------------------S---------S----------S-S----S--------S------------------------
--S---------------------------------------S-------------S----------------S------
------------S--------SS-------S-------------S------------S----------------------
---------S----------S--------S---------------------------S-----S----------------
S-------S-S---S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS------------S-----S----S--S---S-----------S--S--------S---------S
-------S-----------S-S---S-----S-----S---------------S------------SS------------
S-------------------------S--S-----------------------------------S-----S--------
--------SS-----S----------SSSSS-SSSSSSS-SSS-SSSSSSSSSSSSSS--------S----------SS-
--S-------SS---S----S-SSS-----S---S-------S---SSSSSSS---------------S-SSSSSSS---
------SSSSSSSSS------------------S-------SS--------S--------------------S--S----
------------S-SSSS-------S-------S-S--SS-------------S--S-----------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_3424
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--------------------------------------------AGTATTTCCGGACGGAGGGA----------------
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>reverse_4990
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-----------------------------TGTCACGCTTTGGATGTCGA-------------------------------
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