>input_sequence_56166
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----------------------------------------------------ATGCTGCCAACTCGTTTCCCTAGCCGCG
GTGCCGTCAACGCCGCGGGGCTGGAGACCCTGCTGCCGGCAGCTTCCCGCGCCGTGCTCTCGGAGTTCATAGCCACCGCC
GTGTTCGTCTTCGCCGCCGAAGGCTCCGTCTACGGCCTCTGTACGTGAACCTGCTAGCACT-------------------
----CTCTCGTATACATGATCATCTCGCGGTGCTGTGTGTGAAGAA--------TTTTGTTTGGTTTGTATGGCAGGGAA
GATGTACAAGGACACGGGCACGCTGGGCGGCCTGCTCGTGGTGGCGGTGGCGCACGCGCTCGCTCTGGCCGCGGCGGTGG
CGCTGGCGAGCGGCGCCTCGGGCGGGCACGTCAACCCGGCCGTCACGTTCGGCGTGCTCGTCGGCAGGCGCATCTCCTTC
GCGCGCGCCGTGCTCTACTGGGCGGCGCAGCTTCTCGGCGCCGTGCTCGCCGCCGCTCTCCTCAGGATCATCTCCGGCGG
CGTGGTAATTAAGCTGTTCTCTTCTCAACAAGCGCTTTTTTTTTCCTG------------------------CACTGCAG
TTGCCTTCGATTAAGTTGTTTCTAGTTCAAGTACATTTGTCTGAAAAAGTCACCACGGTCACAAGTTCAATTAGCTCAGC
GCCTATT-GTTACTGTTGCACAAATTGAGCCAGTTTCAGAGCCATCAGGTATTCAGATCGCAGAGCTAGAAACATTTACT
CAGCATGGCACCGTTGCTCGGCTACGTTTTGGATGTTCTTGAGCCTACCAACAAATTCAAACAAGCGGTTGCGTA-TTTC
CTCTTGGCGAGAGTTATCTGC----ACATACATATATATACACGTCATCATGTCCGCCACGTCTCATTTCTATGTGTCTT
G------TCCTGCAGCGCCCCATGGGGTTCACGCTCGGCCACGGCATCCACGAGCGGCACGCCCTCCTGCTCGAGGTCGT
CATGACGTTCGGGCTCATGTACACCGTGTACGCCACCGCCGTCGACCGGAACCGCGGCGGCAACGTCGGCGCCATCGCGC
CCATCGCCATCGGCTTCGTCCTGGGCGCCAACATCCTCGCAGGCGGCCCGTTCGACGGAGCCGCGATGAACCCGGCGCGG
GCGTTCGGCCCGGCACTCGTCGGCTGGAGCTGGCGCCACCACTGGGTCTACTGGGTCGGCCCGCTGATCGGCGCCGGGCT
GGCCGGCGCGCTGTACGAGTTTGTCATGGCCGAGCAACCCGAGGAGCCGGCAGCTGCGGTCAGGCGTGAGCTGCCCGTGC
CCGCCGAGGATTACTGA---------------------------------------------------------------
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>chr2A_1_TraesCS2A01G374400
GAAAGAGCATCTAATAGTGAAATTTTCTCAAAAAATGAAGTATCTAAGATAGAATCAATTAGTGACATTGGTATTACCCT
TAGGGAAGATAGAAAATAGAAAATAAATTAAAACAAATGATTAAAAATCTTGCACACAATTTGTAGAAAAATGCACATTT
CTGTAAATGCAAATATAAATATATAATAGTGTGCATTTCACAGTTCGATATAATTTAGACATATATTGCATTATACATAT
GTATATACTAACACACACCCAACATTTACACATATGCATACACATAAAAGAAGACTCAAGATAGAAAAAAAAACAGAAAC
AAACACACATAAAAAGTAAAAAAAAACGCACCCAACATTTACACATAAACATAAAAAATTTGACTCAAGATACAAAAAAA
TCCCAGAAACAAACACACATAAAAAGAAAAAAGCATGAACCGGTTTTCTTTATATTACTGTCAAATATCAAAAGCATCAT
AGAATTTGTCTTCGAATTTAAATTAACACGACTCGACAAACACGCCCACTAAAATACTCGGCCGCCTGTCAGACGTCTAA
TGATTAATACTCACGCTAATTAAGAAAGTTTGCATGCATCGGCAGATCGGCTGCATGCACATGGTAGCGCTCGTCACGTG
CATGAAGTGCTGGGAAAAAAGGACTGATCCTAAATTGTTTTTCAAGCGACTGAAGAGTAGCTAAAGTGAAGAAAAAACAC
TGCATGCGTCT-----CCATACGAGGGGCTCCTCTTCGCACGAACCTCGAAGCTTCGGAACCGTATATCTCCAGATGCGA
TTGCTCCCACACGGCCACACGCGTCCCCTCCCACTGACCACCTGTCCCCTCCGCCTCCAGCGTCGCCGCCTACTGC----
---CTAGCGCTGCAAAGAGCAACCCCCAACTCCAGCCGCTCCTCACTAGCTTGCGGAAGAGTGCAGCTCGCCGCGAACTC
GGGGATCACCACTCAGACAGAGGAGAAAGTCAGCCTCTTGGAGACCTGGACCATGCTGCCAACTCGTTTCCCTAGCCGCG
GTGCCGTCAACGCCGCGGGGCTGGAGACCCTGCTGCCGGCAGCTTCCCGCGCCGTGCTCTCGGAGTTCATAGCCACCGCC
GTGTTCGTCTTCGCCGCCGAAGGCTCCGTCTACGGCCTCTGTACGTGAACCTGCTAGCACT-------------------
----CTCTCGTATACATGATCATCTCGCGGTGCTGTGTGTGAAGAA--------TTTTGTTTGGTTTGTATGGCAGGGAA
GATGTACAAGGACACGGGCACGCTGGGCGGCCTGCTCGTGGTGGCGGTGGCGCACGCGCTCGCTCTGGCCGCGGCGGTGG
CGCTGGCGAGCGGCGCCTCGGGCGGGCACGTCAACCCGGCCGTCACGTTCGGCGTGCTCGTCGGCAGGCGCATCTCCTTC
GCGCGCGCCGTGCTCTACTGGGCGGCGCAGCTTCTCGGCGCCGTGCTCGCCGCCGCTCTCCTCAGGATCATCTCCGGCGG
CGTGGTAATTAAGCTGTTCTCTTCTCAACAAGCGCTTTTTTTTTCCTG------------------------CACTGCAG
TTGCCTTCGATTAAGTTGTTTCTAGTTCAAGTACATTTGTCTGAAAAAGTCACCACGGTCACAAGTTCAATTAGCTCAGC
GCCTATT-GTTACTGTTGCACAAATTGAGCCAGTTTCAGAGCCATCAGGTATTCAGATCGCAGAGCTAGAAACATTTACT
CAGCATGGCACCGTTGCTCGGCTACGTTTTGGATGTTCTTGAGCCTACCAACAAATTCAAACAAGCGGTTGCGTA-TTTC
CTCTTGGCGAGAGTTATCTGC----ACATACATATATATACACGTCATCATGTCCGCCACGTCTCATTTCTATGTGTCTT
G------TCCTGCAGCGCCCCATGGGGTTCACGCTCGGCCACGGCATCCACGAGCGGCACGCCCTCCTGCTCGAGGTCGT
CATGACGTTCGGGCTCATGTACACCGTGTACGCCACCGCCGTCGACCGGAACCGCGGCGGCAACGTCGGCGCCATCGCGC
CCATCGCCATCGGCTTCGTCCTGGGCGCCAACATCCTCGCAGGCGGCCCGTTCGACGGAGCCGCGATGAACCCGGCGCGG
GCGTTCGGCCCGGCACTCGTCGGCTGGAGCTGGCGCCACCACTGGGTCTACTGGGTCGGCCCGCTGATCGGCGCCGGGCT
GGCCGGCGCGCTGTACGAGTTTGTCATGGCCGAGCAACCCGAGGAGCCGGCAGCTGCGGTCAGGCGTGAGCTGCCCGTGC
CCGCCGAGGATTACTGAGCGGCATGCGTCGTGCATCTACTGTAACTAATTAGCACCTGCATGCAAGCATACTATGTTGGA
TGCAGTACATATTACGG-AAACGGAAATAAATTCAAATAAAGAAGAGAGAAGGAGTC--ATAGTCTGATTCCAAACCTGT
TAGAGCATCTCCAACAGGCGCGCCAAACTAGCGCCGCGCCGCAAAATCCCCCGTTTTAACGCGCGCAACCGGAATAGTTG
CTCCAGCGGGCGCGCGAAAACAACGCGCGGCATACGTAGTCCAGCACGCGGGCCGAAACGCAATCGCGCGCCGCATATTT
GCTGCGTTCACTTCCGCGCGCTCGCTCGCACCTCCCACCCCCATCCATACGTGTCGCGCGCGTTGCTGGAGCGGCACGCG
CGCTGCATTTTAGCGCGGTTGCTGGAGCCAGCGCTGCGCGCCGCGCCAAACCAGATGATGGACGCACGCTATAACTGTTT
TTTGCGCGCGGCGCGTTCGGCGCATGTTGGAGATGCTCGTAAGGGTACTTCGTGTTCGAGTCCAGCACCGTGCGGGCAAT
AAGTAGGAGTAGTCTAGATACCAAGCCTCGACTAGCGCGCCGGACG----------------------------------
--CAATGTCTTGGTCTGAGCTCCCAGAGGACCTCGGCGACTCGATCCTCCGACGCCTCCGCCGCCACGATGATCGCGTCT
GCTTCGGCGCCGTCTGCCGGCAGTGGCGCTCCTGCGCACGGCGGAACAGCCCTCCGTCGCAGTTCCCGTGGCTCGTCTTA
CCGGACCAGACCTTTTACAGCTTGCCCGACCCGGCTTTCCGGCCGCTGCCACTCCGTCTTGACTTCCATCGCCAGGTACC
GCATGCCCAGAGCTCAAAAGAAACAAAGAAACATGAAAAATCCAATGAAAACCCTAATAAGAAACAATGGAAACCAAAGA
AAAAATAAAACAAAAAAAACCGAAGAAACAAGTGCAAAAGAATGAAAAATAGTGAAAACCAAAAAACAAAGAAAAAAATG
AGAAAAAAGAATACAA
>chr2B_708
GAAGAAG-------------------------------------------------------------------------
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-------------------------------------------------------------------------AAAACAC
TGCATGCGTAGCGTCCCCGTACGAGGGGCTCCTCTTCCCACGAACCTCGAAGCTTCGGAACCATATATCTCCAGATGTGA
TTGCGCCCACACGGCCACACGCGTCCCCTCCCACTGACCACCTGTCCCCTCCACCTCCAGCGTCGCCGCCTACAGCCTTA
GCGCTAGCGCTGCAAAGAGCAA-----------AGGCGCACTTCAATAGCTTGCGGAAGAGTGCAGTTCGTCGCGAACTC
GGGGATCACCACTCAGACAGAGGAGAAAGTCAGCATCTTGGA--------CCATGCTGCCAACACGTTTCCCTAGCCGCG
GTGCCGACAACGGTGCGGGGCTGGAGACCCTGCTGCCAGCAGCTTCCCGCGCCGTGCTGTCGGAGTTCATAGGCACCGCC
GTGTTCGTCTTCGCCGCCGAAGGCTCCGTCTACGGCCTCTGTACGTGAAGAATTTGGT-------TTGATTGTTGTCACG
CATCCTCTCGCGTACATGGACATTTCCCGGTGCTCTGTGTGCGTGTGTGAAGATTTTGGTTCTGTTTGTATGGCAGGGAA
GATGTACAAGGACACGGGCACGCTGGGGGGCCTGCTCGTGGTGGCGGTGGCGCACGCGCTCGCCCTGGCCGCGGCGGTGG
CGCTGGCGAGCGACGCCTCGGGCGGGCACGTCAACCCGGCCGTCACCTTCGGCGTGCTCGTCGGCAGGCGCATCTCCTTT
GCGCGCGCCGTGCTCTACTGGGCGGCGCAGCTTCTCGGCGCGGTGCTCGCCGCCGCTCTCCTCAGGATCATCTCCGGCGG
CGTGGTAATTAAGCTGTTCTCTTCTCAACAAGCGCTTTTTTTTTC-TG------------------------CACTGC-G
TTGCCTTTGATTAAGTTGTTTCGAGTTCAAGCACATTTGTCTGAAAAAGTCACCACGCTCAAATTCGTG-----------
----------------------------------------------------------------GCCAGAAGCATTTACC
GAGCATGGCACCGTTGCTCGGCTACATTTTGGTTGTTCTTGAGCCTACCAACAAATTCAAAGAAACGGTTGCGTATTTTC
CTCTCGGCGAGAGTTGTCTGCACACACGTACACACG-----------TCATGTCCGCCACGTCTCATTTCTATGTGTCTT
GGTCTTGTCCTGCAGCGCCCCATGGGGTTCATGCTCGGCCACGGCATCCACGAGCGGCACGCCCTGCTGCTCGAGGTCGT
CATGACGTTCGGGCTCATGTACACCGTGTACGCCACGACCGTCGACCGGAACCGTGGCGGCAACGTCGGCGCCATCGCGC
CCATCGCCATCGGCTTCGTCCTGGGCGCCAACATCCTCGCCGGCGGCCCCTTCGACGGCGCCGCGATGAACCCGGCGCGG
GCGTTCGGCCCGGCCCTCGTCGGCTGGACCTGGCGCCACCACTGGGTCTACTGGGTCGGGCCGCTGATCGGCGCCGGGCT
GGCCGGCGCACTGTACGAGTTTGTGATGGCTGAACAACCCGAGGAGCCGGCGGCTGCGGCCACGCGTGGGCTGCCCGTGC
CCGCCGAGGATTACTGAGCTGCGCTC----TGCATCTGCTGTAACTAATTAGCACCTGC---------------------
---AGTACATATTACGGAAAACGGAAATAAATTCAAATAAAGAAGAGAGAGGGAGTC--AGAGTCCGATTCCAAGCCGGT
TAG-----------------------------------------------------------------------------
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---------------------------------------TAATGGCACTTCGTGTTGGGGTTCATCACGGTGTGGTGTGA
TAC-TGTGATAACGACATACCGTGCGGGCAAGTAGATATAATGCCAGCCTCAGCTAGCACCTGACTCGTATCTTGGCTAA
CCCAATGTCTTGGTCTGAGCTCCCGGAGGACCTCGGCGACTCGATCCTCCGCCGCCTCCGGCGCCACGATGATCGCGTCT
GCTTCGGCGCCGTCTGCCGGCAGTGGCGCTCCTGTGCATGGCGGAACAGCCCTCCGTCGCTCTTCCCGTGGCTCGCCTTA
CCGGACCAGACCTTTTACAGCTTGCCCGACTCGGCTTTCCGGCCGCTGTCGCTCCGTCTTGACTTCCATCGCCAGGTACC
GCATGCCCAGAGCTC-----------------------------------------------------------------
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>chr2D_779
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---------------------------------------------------------------TATATCTCCAGAC----
-TGCTCCGACACGGCCACACGCGTCCCCTCCCACTGACCACCTGTCCCCTCCACCTCCAGCGTCGCCGCCTACTGC----
---CTAGCGCTGCAAAGAGCAACCCCCAACTCCAGCCGCACTTCACTAGCTTGCGGAAGAGTGCAGTTCGTCGCGAACTC
GGGGAT---------------------------------------------CATGCTGCCAACTCGTTTCCCTAGCCGCG
GTGCCGACAACGCTGCGGGGCTGGAGACCCTGCTGCCGGCAGCTTCCCGCGCCGTGCTGTCGGAGTTCATAGCCACCGCC
GTGTTCGTCTTCGCCGCCGAAGGCTCCGTCTACGGCCTCTGTACGTGAACCTGCTAACACACAGCTTGATTGTTGTCATG
CATACTATCGTC--CACGGATATTTCTCGGTGATGTGTCTGATGAA--------TTTGGTTCTGTTTGTGTGGCAGGGAA
GATGTACAAGGACACGGGGACGCTGGGTGGCCTGCTCGTGGTGGCGGTGGCGCACGCGCTCGCTCTGGCCGCGGCGGTGG
CGCTGGCGAGCGGCGCCTCGGGCGGGCACGTCAACCCGGCCGTCACGTTCGGCGTGCTCGTCGGCAGGCGCATCTCCTTT
GCGCGCGCCGTGCTCTACTGGGCGGCGCAGCTTCTCGGCGCCGTGCTCGCCGCCGCTCTCCTCAGGATCATCTCCGGCGG
CGTGGTAACTAAGCTGTTCTCTTCTCAACAAGCGCTTTTTTTTTC-TACACTGCGTTGCCTTTTTTTCTCTACACTGC-G
TTGCCTTAGATTAAGCTATTTCGAGCTCAAGTTCACC----------------------------------TAGCTCAGC
GCCTATTTGTTACCGTTGCACAAATTGGGCCAGTTTCAGAGCCATCAGGTATTGAGATCGCAGAGCTAGAAGCATTTACT
AAGCATGGCACCGTTGCTCGGCTAAATTTTGGATGTTCTTGAGCCTACCAACAAATTCAAACAAGCGGTTGCGTA-TTTC
CTGTCGGCGAGAGTTATCTGCACGTACATACATATATATACACGTCATCATGTCCGCCACGTCTCATTTCCATGT-----
-GTCTTGTCCTGCAGCGCCCCATGGGGTTCACGCTCGGCCACGGCATCCACGAGCGGCACGCCCTGCTGCTCGAGGTCGT
CATGACGTTCGGGCTCATGTACACCGTGTACGCCACCGCCGTTGACCGGAACCGCGGCGGCAACGTCGGCACCATCGCGC
CCATCGCCATCGGCTTCGTCCTGGGCGCCAACATCCTCGCCGGCGGCCCGTTCGACGGCGCCGCCATGAACCCGGCGCGG
GCGTTCGGCCCGGCGCTCGTCGGCTGGACCTGGCGCCACCACTGGGTCTACTGGGTCGGCCCGCTGATCGGCGCCGGGCT
GGCCGGCGCGCTGTACGAGTTTGTCATGACCGAGCAACCCGAGGAGCCGGCGGCAGCGGCCAGGCGTGAGCTGCCCGTGC
CCGCCCAGGATTACTGAGCTGCGCTC----TGCATCTGCGCTAACTAATTAGCGCCTGCATGCAAGAAC---ATGTTTCA
TGCAGTACATATTAGGGAAAACGGAAATAAATTCAAATAAAGAAGAGAGAGGGGAGTCAAGAGTCCGATTCCAAGCCGGT
TAG-----------------------------------------------------------------------------
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---------------------------------------TAATCGCACTTCGTGTTGGAGCCCAGCACGGTGTGGTGTGG
ATTTTGTGATAACGACATACCGTGCGGGGAATAAGTAG--ATGCCAGCCTCAGAGCAAGCGGCTAAACCAATTA------
-CCAATGTCTTGGTCTGAGCTCCCGGAGGACCTTGGCGACTCGATCCTCCGGCGCCTCCGGCGCCACGATGACCGCGTTT
GCTTCGGCGCCGTCTGCCGGCAGTGGCGCTCCTGCGCACGGCGGAACAGCCCTCCGCCGCAGTTCCCCTGGCTCGCCTTA
CCGGACCAGACCTTTTACAGCTTGCCCGACTCGGCTTTCCGGCCGCTGCCGCTCCGTCTTGACTTCCATCGCCAGGTACC
GCATGCCCAGAGCTC-----------------------------------------------------------------
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>SNPs
---SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
---------SS-------S------------------S------------------------S--------------S--
----------------------------------------------------S---------------------------
---------------------------------------S-S------------------------S---S---------
----------------------------------S-------SSSSSSSS------------------------------
------S------S--------------------------------------------S---------------------
------------------------------------------------------------S-------------------
-----------S------SS---S--S---------------S--------------S---SS-----------------
---------------------------S----------------------------------------------------
-------------------------------------------------------------------------------S
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---------------------------------------------S--------------------------------S-
-------S--------------S----------------------------------S---S-SSSSSSSS---------
-------------S-------------S-------------------------S-----------------S--------
S------------------------S------------------------------------------------------
----S---------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
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----------------------------------------S-----------------S---------------------
--------------S-------------S---------------------------------------------------
---------------------------------------------------S-------S--------------------
-------------------S--SSS-SSSS-------S----------------------------S-SSSS-----SS-
--------------------------------------------------S---------S----S--------S--S--
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--S----------S-----------S---S--SSSSS
--S-S-SSS--SSSSSSSSS-SSSSSSS-S-S---SSSSSSS-S-S----------------------------------
------------------------S--------------------------S--------S-------------------
---------------------------------------------------------------------------S----
------------------------------S-------------------S-----------------------------
---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_532
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--------------------------------TCGACAAACACGCCCACTAA----------------------------
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>reverse_2548
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-------------------------------------------------------------------ACCGGAATAGTTG
CTCCAGC-------------------------------------------------------------------------
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