>input_sequence_56138
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---------------------ATGATCCGGCCCAGCTCCAAGGAGTCACTTAATTATGACAACAATAGCCAGAAAGTTTA
TCCTCAACCAATTGATGAAAATATGAATCAGAACATGGG---------CAGTATGATTGGAAGAATATTCAACAACATAT
CCTCTTTAAAGGCTGCATACATTCAGCTGCAGGAAGCTCACACCCCATATGACCCGGACAAGATACAAACTGCTGATAAG
CTTGTCATAGATGAGCTCACGAGCCTTTCAGAACTCAAACATACTTACAGAGAGAGAAATCCTAAGCCAGTAGCAGCATC
ACCTCAAGATTCACGCTTGCTTTCTGAAATACAGGAGCAGCAAAACTTGTTAAAGACGTACGAGGTCATGGTAAAGAAGT
TCCAGTCCCAGATCCAGAATAGAGATACTGAGATTACCCACTTACAGCAGCAAACCGATGAGGCCAAACATCGGAAAACA
AAACTGGAGAAGAAATTGAAGCAAAGGGGCTTACTTAACAAGGAATCAGAGGAATCTGATGAAGAAGAGAGCTATTTCTC
TGTTGAGCTGACACCAAGCTTGTTTACATCTACTGCTGATAACGCATACCAATCAATACATGAGTTCTCAAAGCCCTTGA
TCAACATGATGAAAGCTGCAGGTTGGGATCTTGATGCTGCTGCTAACGCAATTGAACCTGATGTAGTTTACACAAGGAGA
GCTCACAAGAAGTATGCATTTGAGTCTTATATCTGCCAGAGAATCTTCAGTGGTTTCCATCAAGAGAACTTCTTGATTGA
CGCTGCTAATGCCACTGTTTCCAATGAGGCTTTCTTCCATCAATTCCTTGCAGTACGAGCCATGGATCCTTTGGATGTAT
TGAGCCAAAACCCAGATTCAGTTTTCGGAAAGTTCTGCAGAAGCAAATACCTACTGCTTGTGCACCCAAAGATGGAAGGT
TCTTTCTTCGGCAACATGGATCAGAGAAACTACGTCATGAGTGGCGGGCATCCAAGGACACCTTTCTATCAGGCATTTCT
CAAGTTGGCGAAGTCCATATGGTTGTTGCACAGGCTGGCCTACTCTTTCGACCCAAAGGTCAGGGTCTTCCAAGTGAAGA
AGGCAAGCGAGTTCTCAGAGATTCACATGGAAAGCGTTGTGAAGAACATCGTCTTGGATGAGAATGCCGAGAGGCCTAGA
GTCGACTTGATGGTGATGCCTGGTTTCTTGATCGGGACTAGCGTCATACAGTCTCGAGTGTACCTTTCTGGTGTAAAGTG
TGACGACTGA----------------------------------------------------------------------
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>chr6D_1_TraesCS6D01G171700
TGGTATTCCAGACATTTTAAACTTTAATTACAGCTCAGACAGCAAGCATAACTAAAAGACAGTTCAGCCACTTCTCTGGG
AGCCAGCCAGAAGCCACTTCTGGAGAAGCTTTAGACGCCCAACATGCTTGCTATATAGTTGAATGTTACATGTTTTATGA
CTTTGTTCCTTGTGGGCTTTGCTGATTTTGACATTTACGGCATGGAGCTTGCAGTAGACGGTTGGTACATGAAGGGAAAA
TTCGAGTATAGTTTAGAAAATAGACTTTCTCTATGCATTTATATTAAGATTAATAAAATTTGGGCCTGCTATAGCCAATA
CTTGGGAGGAAAGCAATGTATAATTGGGCTGCACATGGTTCTTGATTAGAGGGCAATCAACACCATCATCATCAGTGTAG
GATACGTGATGGTTAAGCTTTTTAATATGGATCAGCGACCTGTAAAGAGGCAGGGAGT------------TGATTATGAT
TATGATTGGTATCTAAAGATAACATTGGTTTTGACCCATATAGGCTGCCTGCTTTGTAGTTTCTTGTACTTTCAGTTACA
TGGACCATATGTCTTGAAATGAATCTTCCCATG---------------GCACCCTAATGAGTAAAGTGCAGTTCATACCG
TTCATCTTGGGAGATCGACTGGTTGTTGGGTTATTGTTAGCTGTCCTACTAGAATACTCAAATTTTGTATTGTTTGTGAT
GGGTTGAGGACTTGTTG--TGGAGGTCATTTTGT--GTAACATATG-TTGTTCAAGGTTCAGAATATGGGTGTGTGGTTA
TA-T-AATCTCTGGTTCAGATG--CCCAAAGCTTGCTGTAGTTTATTTTGGACGATCTATTTCTCTTTCTTATTACAGGA
TGTAAAGAACTTGCAAAGAAAGTTTCTTTTCAGCTATT-TTTCCTGTTATGTCCGTTTATGCAATTCGTGTCTT------
----------------ACTCGGTGTTTGTTTTTGCAGGTGGATGCTATTTGCAGGCTGGTA--AAGACAACTAACTTTGT
TGATCCTGTGCGCAAGAAGTAATGATCCGGCCCAGCTCCAAGGAGTCACTTAATTATGACAACAATAGCCAGAAAGTTTA
TCCTCAACCAATTGATGAAAATATGAATCAGAACATGGG---------CAGTATGATTGGAAGAATATTCAACAACATAT
CCTCTTTAAAGGCTGCATACATTCAGCTGCAGGAAGCTCACACCCCATATGACCCGGACAAGATACAAACTGCTGATAAG
CTTGTCATAGATGAGCTCACGAGCCTTTCAGAACTCAAACATACTTACAGAGAGAGAAATCCTAAGCCAGTAGCAGCATC
ACCTCAAGATTCACGCTTGCTTTCTGAAATACAGGAGCAGCAAAACTTGTTAAAGACGTACGAGGTCATGGTAAAGAAGT
TCCAGTCCCAGATCCAGAATAGAGATACTGAGATTACCCACTTACAGCAGCAAACCGATGAGGCCAAACATCGGAAAACA
AAACTGGAGAAGAAATTGAAGCAAAGGGGCTTACTTAACAAGGAATCAGAGGAATCTGATGAAGAAGAGAGCTATTTCTC
TGTTGAGCTGACACCAAGCTTGTTTACATCTACTGCTGATAACGCATACCAATCAATACATGAGTTCTCAAAGCCCTTGA
TCAACATGATGAAAGCTGCAGGTTGGGATCTTGATGCTGCTGCTAACGCAATTGAACCTGATGTAGTTTACACAAGGAGA
GCTCACAAGAAGTATGCATTTGAGTCTTATATCTGCCAGAGAATCTTCAGTGGTTTCCATCAAGAGAACTTCTTGATTGA
CGCTGCTAATGCCACTGTTTCCAATGAGGCTTTCTTCCATCAATTCCTTGCAGTACGAGCCATGGATCCTTTGGATGTAT
TGAGCCAAAACCCAGATTCAGTTTTCGGAAAGTTCTGCAGAAGCAAATACCTACTGCTTGTGCACCCAAAGATGGAAGGT
TCTTTCTTCGGCAACATGGATCAGAGAAACTACGTCATGAGTGGCGGGCATCCAAGGACACCTTTCTATCAGGCATTTCT
CAAGTTGGCGAAGTCCATATGGTTGTTGCACAGGCTGGCCTACTCTTTCGACCCAAAGGTCAGGGTCTTCCAAGTGAAGA
AGGCAAGCGAGTTCTCAGAGATTCACATGGAAAGCGTTGTGAAGAACATCGTCTTGGATGAGAATGCCGAGAGGCCTAGA
GTCGACTTGATGGTGATGCCTGGTTTCTTGATCGGGACTAGCGTCATACAGTCTCGAGTGTACCTTTCTGGTGTAAAGTG
TGACGACTGATAAGTGTTAGGGTTGCCTGAGAAGATTCCGGGCGTCTCACACAACCTGCAAGATCATCGTACGTCTTGTA
TGTAATGCCGCCTCTCCAAAATGTTATTCGTATGAAATGTGGTAGCAACACCTTTTTCGTAAAAAGCATAGTATGCTTTG
GTCATTCGAAGACTGTAATGTGTGCTTTCTCTGTTTTGTAATGCATGTAAATCCTGTCCCAACGTTTGGTCTACATATAA
GTTATGAAAAATTGTCAATGTGGCGTGGATGTACCATCTA-TATGGTGACTGTACAGCCATTTGCAAACTGGCATTCAGT
TCCTCGTTTTGGTGCCTAATCTGGCTTTTCTACTGCCTAATAATGACG------------------GTAGTATTTTGTTT
GTTCTATACTGCATTTGTAGCCAATGTGTAGACGGAATGGGCATGTGCAGCAAATTGTTTAGGACGCACTGAGTATGATC
GTTTGATTTTGCTGTGCCGGTTACTTCATGGATCTTTTCCATGTAAAAAACAAAAGGGTCCTTAGCGAGGGTCGCTAAGG
GCATGGCCAATGCATAGCCTCATGGTGATGCCCCATGTGCCATATAGGATTGGATGTTAGGGAAATTAGGTTCGGATAAG
GAAGCGAGATCCTCTGTAAGAGACGGGTGCTTGGGGAGAAAAATTGTGGACCGATGTAAAAAGCTGAAAAAATTGAAATA
AGGAGTAGAGATGCATATGTATTAGAGTTTTTTTTAAGTTTCTATTTTTTATTATTTGATGAGGGCCACTAATAGTAGCT
TACTTTGGGGAGAAAAATCAATGCAGTTGCCTTAAGCCACCTTTTTTCATGGGGCATGTGTATCCATATGCTACCATTGT
TCATGCCCTAAGAGCACATATAATAAAGTAAACTAGAAGAGCCAAACCAATGATCTTCTCAGAATTGATTTTCTTTTTTC
CATTTTCAACTTTCCATCGATATCCCATTTTGGCTGCTTTAGCAGCTCATATGAGACTCAACACCCTTC
>chr6A_1
TGGTATTCCAGACATTTTAAACTTTGATTACAGCTCAGATAGCAAGCATCACTAAAAGCCAGTTCAGCCACTTCTCTGGG
AGCCAGCCAGAAGCCACTTCTGGAGAAGTTTTAGCCGCCCAACATGCTTGTCATATAGTTGAAAGTTGCATGTTCTATGA
CTTTGTTCCCTGTGGGCTTTGCTGAATTTGATATTTACTGCATGGGT-TTGCAGTAGACGGTTGGTACATGAAGGGAAAA
TTCAAGTATAGTTTAGAAAATAGACTTTCTCTATGCATTTATATTAAGATTAATAAAATTTGGGCTTGCTATAGCCAATA
CTTGGGAGGAAAGCAATGTATAATTGGGCTGCACATGGTTCTTGATTAGAGGGCAATCAACACCATCATCATCAGTGTAG
AATATGTGATGGTTAAGTTTTTTAATCTGGATCAGCGACCTGTAAAGAAGCAGGGAGT------------TGATT-----
-------GGTATCTAAAGATGACATTGGTTTTGACCCATATAGGCTGCCTGCTTTGTAGTTTCTTTTACTTTCAGTTACA
TGGACCATATGTCTTGAAATGAATCTTCTCATG---------------GCACCCTAATGAGTAAACTGCAGTTCATACCG
TTCATCTTGGGAGATCGACTGGTTGTTGGGTTATTGTTAGCTGTCCTACTAGAATACTCAAATTTTGTACTGTTTGTGAT
GTGTTGAGGACTTGCTG--TGGAGGTCATTTTGT--GTAACATATA-TTGTTCAAGGTTTAGAATATGGGTGTGTGGTTA
TA-G-AATCTCTGGTTCAGATT--CCCATAGCTTGCTGTAGTTTATTTTGGATGATCTATTTCTCTTTCTTATTACAGGA
TGTAAATAACTGGCAAAGAAAGTTGCTTTTCAGCTA-T-TTTCCTGTTATGTCCGTTTATGCAATTCGTGTCTT------
----------------ACTCGGTGTTTGTTTTTGCAGGTGGATGCTATTTGCAGGCTGATA--AAGACAACTAACTTTGT
TGATCCTGTGGGCAAGAAGT-ATGATCCGGCCCAGCTCCAAGGAGTCACTTAATTATGACAACAATAGCCAGAAAGTTTA
TCCTCAACCCATTGATGAAAATATGAATCAGAACATGGG---------CAGTATGATTGGAAGAATATTCAACAACATAT
CCTCTTTAAAGGCTGCATACATTCAGCTGCAGGAAGCTCACACCCCATACGACCCAGACAAAATACAAACTGCTGATAAG
CTTGTCATAGATGAGCTCACAAGCCTTTCAGAACTCAAACATACTTACAGAGAGAGAAATCCTAAGCCAGTGGCAGCATC
ACCACAAGATTCACGCTTGCTTTCTGAAATACAGGAGCAGCAGAACTTGTTAAAGACATACGAGGTCATGGTAAAGAAGT
TCCAGTCCCAGATCCAGAATAGAGATACTGAGATTATCCACTTACAGCAGCAAACCGATGAGGCCAAACATCGGAAAACA
AAACTGGAGAAGAAATTGAAACAAAGGGGCTTACTTAACAAGGAGTCAGAGGAATCTGATGAAGAAGAGAGCTATTTCTC
TGTTGAGCTGACACCAAGCTTGTTTACATCTACTGCTGATAATGCATACCAATCAATACATGAGTTCTCAAAGCCCTTGA
TCAACATGATGAAAGCTGCAGGTTGGGATCTTGATGCTGCTGCTAACGCGATTGAACCTGATGTAGTTTACACAAGGAGA
GCTCACAAGAAGTATGCGTTTGAGTCCTATATCTGCCAGAGAATCTTCAGTGGTTTCCATCAAGAGAACTTCTCGATCGA
TGCTGCTAATGCCACTGTTTCCAATGAGGCTTTCTTCCATCAATTCCTCGCAGTACGAGCCATGGATCCTTTGGATGTAT
TGAGCCAAAACCCAGATTCAGTTTTCGGTAAGTTCTGCAGAAGCAAATACCTATTACTTGTGCACCCAAAGATGGAAGGT
TCTTTCTTCGGCAATATGGATCAGAGAAACTACGTCATGAGTGGCGGGCATCCAAGGACACCTTTCTATCAGGCATTTCT
CAAGTTGGCGAAGTCCATATGGTTGTTGCACAGGCTGGCCTACTCTTTCGACCCAAAGGTCAGGGTCTTCCAAGTGAAGA
AGGCAAGCGAGTTCTCGGAGATTCACATGGTAAGTGTTGTGAAGAACATCATCTTGGATGAGAATGCCGAGAGGCCTAGA
GTCGACTTGATGGTGATGCCTGGTTTCTTGATCGGGACTAGCGTCATACAGTCTCGAGTGTACCTTTCTGGTGTGAAGTG
TGCCGACTAATAAGTGTTAGGGTTGCCTGAGAAGATTCCGGGCGTTTCACACATCCTGCAAGATCATCGTACATCTTGTA
TGTAATGCCGCCTCTCCAAAATGTTATTTGTATGAAATGTGGTAGCAACACCTT-TTCGTAAAAAACATAGTATGCTTTG
GTCATTCGAGGACTGTAATGTGTGCTTTGTCTGTTTTGTAATATATGTAAATCCTGTC------TTTGGTCTACATATAA
GTTATGAAAAATTGTCAATGTGGTGTGGATGTCGCTATCTGTATGGTGATTGTACATCCATTTGCAAACTGGCATTCAGT
TCCTCATTTTGGTGCCCAATCTGGCTTTTGTACTGCCTAATAATGATGATACTCCATTTGTATGGAGTAGTATTTTGTTT
GTTCTATACTGCATTTGTAGCCAATGTGTAGACGGAATGGGCATCTGCAGCAAATTGTTTAGGACACCGG--GTATGATC
ATTTGATTTTGCTGTGCCAGTTACTTCATGGATCTTTTCCATGTAAAAAACAAAAGGGTCCTTAGCGAGCGTCG------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------CTAAGAGCACATC--ATAAAGTAAACTAGAAGAGCCAAACCGGTGATCTTCCCAGAATTGATA----TTTTTC
CATTTCCAACTTTCCATTGATATCCCATTTTGGCTGCTTTAGCAGCTCATATGAGACTGGACACCCTTC
>chr6B_1
TGGTATTCCAGACATTTTAAACTTTAATTACAGCTCATACAGCAAGCATCACTAAAAGCCAGTTCAGCCACTTCTCTGGG
AGCCAGCCAGAAGCCACTTCCGGAGAAGCTTTAGACGCCCAACATGCTTGTCATATAGTTGAATGTTACATGTTTTATGA
CTTTGTTCCCTGTGGGCTTTGCTGAATTTGACATTTATGGCATGGAGTTTATAGTAGACGGTTGGTACATGAAGGGAAAA
TTCAAGTATAGTTTAGAAAATAGACTTTCTCTATGCATTTATATTAAGATTAATAAAATTTGGGCCTGCTATAGTCAATA
CTTGGGAGGAAAGCAATGTATAATTGGGCTGCACATGGT--TTGATTAGAGGGCAATCAACACCATCATCATCAGTGTAG
GATATGTGATGGTTAAGCTTTTTAATCTGGATCAGCGACCTGTAAAGAGGCAGGGAGTTGATTATGATTATGATT-----
-------GGTATCTAAAGATGACATTGG-TTTGACCCATATAGGCTGCCTGCTTTGTAGTTTCTTGTACTTTCAGTTACA
TGGACCATATGCCTTGAAATGAATCTTCTCATG---------------GCACCCTAATGAGTAAAGTGCAGTTCATACCT
TTCATCTTGGGAGATCGACTGGTTGTTGGGTTATTGTTAGCTGTCCTGCTAGAATACTCAAATCTTGTACTGTTTGTGAT
GGGTTGAGGACTTGTTG--TGGAGGTCATTTTGT--GTAACATATG-TTGTTCAAGGTTCAGAATATGGGTGTGTGGTTA
TA-G-AATCTCTGGTTCAGATG--CCCAAAGCTTGCTGTAGTTTATTTTGGACGATCTATCTCTCTTTCTTATTA--GGA
TGTAAATAACTTGCAAAGAAAGTTGCTTTTCAGCTA-TTTTTCCTGTTATGTCCGTTTATGCAATTCGTGTCTT------
----------------ACTCGGTATTTGTTTTTTCAGGTGGATGCTATTTGCAGGCTGATA--AAGACAACTAACTTTGT
TGATCCTGTGGGCAAGAAGTAATGATCCGACCCAGCTCCAAGGAGTCACTTAATTATGACAACAATAGCCAGAAAGTTTA
TCCTCAACCCATTGATGAAAATATGAATCAGAACATGGG---------CAGTATGATTGGAAGAATATTCAACAACATAT
CCTCTTTAAAGGCTGCATACATTCAGCTGCAGGAAGCTCACACCCCATACGACCCAGACAAGATACAAACTGCTGATAAG
CTTGTCATAGATGAGCTCACGAGCCTTTCAGAACTCAAACATACTTACAGAGAGAGAAATCCTAAGCCAGTGGCAGCATC
ACCTCAAGATTCACGCTTGCTTTCTGAATTACAGGAGCAGCAGAACTTGTTAAAGACATACGAGGTCATGGTAAAGAAGT
TCCAGTCCCAGATCCAGAATAGAGATACTGAGATTACCCACTTACAGCAACAAACCGATGAGGCCAAACATCGGAAAACA
AAACTGGAGAAGAAATTGAAACAAAGGGGCTTACTTAACAAGGAGTCAGAGGAATCTAATGAAGAAGAGAGCTATTTCTC
TGTTGAGCTGACACCAAGCTTGTTTACATCTACTGCTGATAATGCATACCAATCAATACATGAGTTCTCAAAGCCCTTGA
TCAACATGATGAAAGCTGCAGGTTGGGATCTTGATGCTGCTGCTAACGCAATTGAACCTGATGTAGTTTACACAAGGAGA
GCTCACAAGAAGTATGCGTTTGAGTCCTATATCTGCCAGAGAATCTTCAGTGGTTTCCATCAAGAGAACTTCTCGATCGA
TGCTGCTAATGTCACTGTTTCCAATGAGGCTTTCTTCCATCAATTCCTCGCAGTACGAGCCATGGATCCTTTGGATGTAT
TGAGCCAAAACCCAGATTCAGTTTTCGGAAAGTTCTGCAGAAGCAAATACCTATTACTTGTGCACCCAAAGATGGAAGGT
TCTTTCTTCGGCAACATGGATCAAAGAAACTACGTCATGAGTGGCGGGCATCCAAGGACACCTTTCTATCAGGCATTTCT
CAAGTTGGCGAAGTCCATATGGTTGTTGCACAAGCTGGCCTACTCTTTCGACCCAAAGGTAAGGGTCTTCCAAGTGAAGA
AGGCAAGTGAGTTCTCGGAGATTCACATGGAAAGCGTTGTGAAGAACATCATCTTGGATGAGAATGCCGAGAGGCCTAGA
GTCGACTTGATGGTGATGCCTGGTTTCTTGATCGGGACTAGCGTCATACAGTCTCGAGTGTACCTTTCTGCTGTAAAGTG
TGCCGACTGATAAGTGTTCGGGTTGCCTGAGAAGATTCCAGGCGTCTCACACATCCTGCAAGATCATCGTACGTCTTGTA
TGTAATGCCGCCTCTCCAAAATGTTATTCGTATGAAATGTGGTCGCAACACCTTTTTCGTAAGAAGCATAGTATGCTTTG
GTCATTCGAAGACTGTAATGTGTGCT---TCTGTTTTGTAATGCATGTAAATCCTGTCCCAACGTTTGGTCTACATATAA
GTTATGAAAAATTGTCAATGTGGTGTGGATGTGCTA-CTA-TATGGTGACTGTACAGCCATTTGCAAACTGGCATTCAGT
TCCTCGTTTTGGTGCCTAATCTGGCTTTTCTACTGCCTAA----------------------------------------
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>chr4D_471
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--TGATTGGTATCTAATGTTGCCATTGGTTTCT--CCATATAGGCTACCTGCATTATAGCTTCTTGTACTTATAGTTCCA
CAGACCATATGACTTGAAATGAATCTTCTCTTGACTCCTTAAAGGTCAGCAACCTAGTGCGTAAAATGCGGTTCTTACCG
TTCATCTTGGGAGATCGACTGATCATTGAC-TATTGTTAGATGTCCTGCTCGATTACTCAATGTTTTTCTGATCTTTTTC
GTTTTTGGGTTGGGTGGCATGGAGGTCATGTTAT--GGAACATCTG-TTGTTCAAGCTTGAGATTATGAAGGTGTGGTTG
TATT-AATCTCTGTCTTACAGCAACCCAGAGCATGCTGTAGTTTACTTTGTTTGAATCTCTTTCTCTTCTTATTATAGGA
TGTGAAATACTTACGAAG---GTCGCTTTTGAGCCA----TTCCTATTCTGGCCACTTATGCAGTTCATATTTTTGTCCT
GTAAATTATGACCTGAACCCAGTAGTTGCTTTTGCAGGTGGATGTCCACCTGTACTTTGATTGAAGACAACTAACTTTGT
TGTTCCTGAGGGCAAGAAGTAATGATCCGACCAGGCTCCAAGGAGTCACAAATTTATGATAACAATAGTCAGAAAGTTTA
TCCTCAGCCAATTGATGAAAATATGAATCAGAACATGGACACGATGGACAGTATGATTGGAAGGATATTCAACAACATAT
CCTCTTTAAAAGCTGCATACATTCAGCTGCAGGAAGCTCACACCCCTTACGACCCGGACAAGATCCAAACTGCTGATAAG
CTTGTCATAGATGAGCTCACGAGGCTTTCAGAACTCAAGCATACTTACAGAGAGAAAAATCCTAAGCCAGTAGCAGCATC
ACCTCAAGATTCACGCTTGCTTTCTGAAATACAGGAGCAGCAGAACTTGCTAAAGACATATGAGGTCATGGTGAAGAAGT
TCCAGTCACAGATCCAGAATAGAGATACCGAGATTACCCTTTTACAGCAGCAAATTGATGAGGCGAAACATCGGAAATCA
AAGCTGGAGAAGAAATTGAAACAGAGGGGCTTACTTAACAAAGAATCTGAGGAATCTGATGAAGAAGAGAACTACTTCTC
TATTGAGCTGACACCAAGTTTATTTACATCTGCTGCAGATAATGCATACCAATCAATACACGATTTCTCAAAGCCCTTGA
TCAACATGATGAAAGCTGCTGGGTGGGATCTCGATGCGGCTGCTAACGCAATTGAACCTGATGTAGTTTACACAAGGAGA
GCTCATAAGAAGTATGCATTTGAGTCCTATATCTGCCAAAGAATGTTCAGTGGTTTCCATGAAGAGAGCTTTTCCATCAA
GGCTGCTACTGCCAGTGTGTCCAATGAGGCTTTCTTCCACCAGTTCCTTGCAGTGCGAGCCATGGATCCTCTTGATGTAT
TGAGCCAGAACCCAGATTCGGTTTTCGGAAAGTTCTGCAGAAGCAAATACCTGTTACTTGTGCATCCAAAAATGGAAGGC
TCTTTCTTCGGTAACATGGATCAGAGAAACTACGTCATGAGCGGTGGCCATCCAAGGACAGCTTTCTATCAGGCATTTCT
CAAGTTGGCGAAGTCCATATGGTTATTGCACAGGCTGGCGTACTCTTTCGATCCAAAGGTCAGGGTCTTCCAAGTGAAAA
AGGGAAGCGAGTTCTCGGAGATTCACATGGAAAGCGTAGTCAAGAACATGGTCTTGGATGAAAGTGCCGAGAGGCCTAAA
GTAGGTTTAATGGTGATGCCTGGTTTCTTGATTGGGACTAGCGTCATACAGGCCCGAGTGTACCTATCAGATGTCAAATA
TGCTGACTGAAAA-TGCTGCAGTTGCTTGGGAAGATTCAGGGCGT-----------------------------------
--------------------------------------------------------------------------------
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>chr4A_471
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--TGATTGGTATCTAATGTTGCCATTGGTTTCT--CCATATAGGCTACCTGCATTATAGCTTCTTGTACTCATAGTCCCA
TGGACCATATGACTTGAAATGAATCTTCTCTTGACTCCTTAAAGGTCAGCAGCCTAATGCGTAAAATGCGGTTCTTACCG
TTCATCTTGGGAGATCGACTGATCATTGAC-TATTGTTAGATGTCCTGCTCGATTACTCAATGTTTTTCTGATCTTTTTC
GTTTTTGGGTTGGGTGGCATGGAGGTCATGTTATT--GAACATCTG-TTGTTCAAGCTTGAGATTATGAGGGTGTGGTTG
TA-TTAATCTCTGTCTCACAGCAACCCAGAGCATGTTGTAGTTTACTTTGTCTGAATCTCTTTCTCTTCTTATTATAGGA
TGTGAAATACTTACGAAG---GTCGCTTTTGAGCCA----TTCCTATTCTGGCCACTTATGCAGTTCATATTTTTGTCCT
GTAAATTATGACCTGAACTCAGTAGTTGCTTTTGCAGGTGGATGTCCACCTGTACTTTGATTGAAGACAACTAACTTTGT
TGTTCCTGAGGGCAAGAAGTAATGATCCGACCAGGCTCCAAGGAGTCACAAATTTATGATAACAATAGTCAGAAAGTTTA
TCCTCAGCCAATTGATGAAACTATGAATCAGAACATGGACACGATGGACAGTATGATTGGAAGGATATTCAACAACATAT
CCTCTTTAAAAGCTGCATACATTCAGCTGCAGGAAGCTCACACCCCTTATGACCCGGACAAGATCCAAACTGCTGATAAG
CTTGTCATAGATGAGCTCACGAGGCTTTCAGAACTCAAGCATACTTACAGAGAGAAAAATCCTAAGCCAGTAGCAGCATC
ACCTCAAGATTCACGCTTGCTTTCTGAAATACAGGAGCAGCAGAACTTGCTAAAGACATATGAGGTCATGGTGAAGAAGT
TCCAGTCACAGATCCAGAATAGAGATACCGAGATTACCCTTTTACAGCAGCAAATCGATGAGGCGAAGCATCGGAAATCA
AAGCTGGAGAAGAAATTGAAACAGAGGGGCTTACTTAACAAAGAATCTGAGGAATCTGATGAAGAAGAGAACTACTTCTC
TATTGAGCTGACACCAAGTTTATTTACATCTGCTGCTGATAATGCATACCAATCAATACACGATTTCTCAAAGCCCTTGA
TCAACATGATGAAAGCTGCTGGGTGGGATCTCGATGCGGCTGCTAACGCAATTGAACCTGATGTAGTTTACACAAGGAGA
GCTCATAAGAAGTATGCATTTGAGTCCTATATCTGCCAAAGAATGTTCAGTGGTTTCCATGAAGAGAGCTTTTCCATCAA
GGCTGCTACTGCCAGTGTGTCCAATGAGGCTTTCTTCCACCAGTTCCTTGCAGTGCGAGCCATGGATCCTCTTGATGTAT
TGAGCCAGAACCCAGATTCGGTTTTCGGGAAGTTCTGCAGAAGCAAATACCTGTTACTTGTGCATCAAAAAATGGAAGGC
TCTTTCTTCGGTAACATGGATCAGAGAAACTACGTCATGAGCGGTGGCCATCCAAGGACAGCTTTCTATCAGGCATTTCT
CAAGTTGGCGAAGTCCATATGGTTATTGCATAGGCTGGCATACTCTTTCGATCCAAAGGTCAGGGTCTTCCAAGTGAAAA
AGGGAAGCGAGTTCTCGGAGATTCACATGGAAAGTGTGGTGAAGAACATGGTCTTGGATGAAAGTGCCGACAGGCCTAAA
GTAGGTTTAATGGTGATGCCTGGTTTCTTGATTGGGACTAGCGTCATACAGGCCCGAGTGTACCTTTCAGATGTTAAATA
TGCTGACTGAAAA-TGCTGCAGTTGCTTGGGAAGATTCAGGGCGT-----------------------------------
--------------------------------------------------------------------------------
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>chr4B_582
--------------------------------------------------------------------------------
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------------------------------------------------GCATCCTAATGCATAAAATGCGGTTCTTACCG
TTCATCTTGGGAGATCGACTGATAATTGAC-TATTTTTAGATGTCCTGCTCGATTACTCAATGTTTTTTTGATCTGTTTC
ATTCTTGGGTTGGATGGCATGGAGGTCATGTTATATGGAACATCTGTTTGTTCAAGCTTGAGAGTATGAGGGTGTGGTTA
TA-T-AATCTCTGTCTTAGAGCAATCCAGAGCATGCTGTAGTCTACTTTGTCTGAATCTCTTTCTCTTCTTATTATAGGA
TGTGAAATACTTATGAAG---GTCGCTTTTGAGCCA----TTCCTATTCTGTCCACTTATGCAGTTCACATTTTTGTCCT
GTAAATAATGACCTGAACTCAGTAGTTGCTTTTGCAGGTAGATGTCCACTTGTACTTTGATTGAAGACAACTAACTTTGT
TGATCCTGAGGGCAAGAAGTAATGATCCGACCAGGCTCCAAGGAGTCACAAAATTATGATAACAACAGCCAGAAAGTTTA
TCCTCAACCAATTGATGAAAATATGAATCAGAACATGGACACGATGGACAGTATGATTGGAAGGATATTCAACAACATAT
CCTCTTTAAAAGCTGCATACATTCAGCTGCAGGAAGCTCACACCCCTTATGACCCGGACAAGATCCAAACTGCTGATAAG
CTTGTCATAGATGAGCTCACGAGGCTTTCTGAACTCAAGCATACTTACAGAGAGAGAAATCCTAAGCCAGTAGCAGCATC
ACCTCAAGATTCACGCTTGCTTTCTGAAATACAGGAACAGCAGAACTTGCTAAAGACATATGAGGTCATGGTGAAGAAGT
TCCAGTCACAGATCCAGAATAGAGATACCGAGATTACCCTTCTACAGCAGCAAATCGATGAGGCGAAACATCGGAAATCA
AAGCTGGAGAAGAAATTGAAACAAAGGGGCTTACTTAACAAAGAATCTGAGGAATCTGATGAAGAAGAGAACTACTTCTC
TATTGAGCTGACGCCAAGTTTATTTACATCTGCTACTGATAATGCATACCAATCAATACATGATTTCTCGAAGCCCTTGA
TCAACATGATGAAAGCTGCTGGGTGGGATCTCGATGCTGCTGCTAACGCAATTGAACCTGATGTAGTTTACACAAGGAGA
GCTCATAAGAAGTATGCATTTGAGTCCTATATTTGCCAAAGAATGTTCAGTGGTTTCCATGAAGAGAGCTTTTCCATCAA
GGCTGCTACTGCCAGTGTCTCCAATGAGGCTTTCTTCCACCAGTTCCTTGCAGTACGAGCCATGGATCCTCTTGATGTAT
TGAGCCAAAACCCAGATTCTGTTTTCGGAAAGTTCTGCAGGAGCAAATACCTGTTACTTGTGCATCCAAAAATGGAAGGT
TCTTTCTTCGGTAACATGGATCAGAGAAACTACGTCATGAGCGGTGGCCATCCAAGGACAGCTTTCTATCAGGCATTTCT
CAAGTTGGCGAAGTCCATATGGTTATTGCATAGGCTGGCATACTCTTTCGATCCAAAGGTCAGGGTCTTCCAAGTGAAAA
AGGGAAGCGAGTTCTCGGAGATTCACATGGAAAGCGTAGTCAAGAACATGGTCTTGGATGAAAGTGCCGAGAGGCCTAAA
GTAGGTTTAATGGTGATGCCTGGTTTCTTGATTGGGACTAGCGTCATACAGGCCCGAGTGTACCTTTCAGATGTCAAATA
CGCTGACTGAAAG-TGTTGCAGTTGCTTGAGAAGATTCAGGG--------------------------------------
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---------------------------------------------------------------------
>SNPs
-------------------------------------------------S--------S---------------------
--------------------------------------------------SS----------------------------
---------S---------------S---------------------S--------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S---------------------S------------------------------------------------SSSSS
SS------------------S-----------------------------------------------------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S-----------------S-----------S-------------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S--------------S----------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------S----------------------------------------------S---S--
S-------------------------------------------------------------------------------
-----------------------------------------------------S-S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
--S--------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
-----------------------S--------S---S-------------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------S--------------------S-SSSSS--------
S-----------------S--------------------------------------------------S----SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS------------SSS--------------------------SS--------S----------SSSSS------
-----S-----------S----------------------------------------SS---------
>forward_186
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------TCCTTGTGGGCTTTGCTGAT------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>reverse_1976
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GCTTGTGCACCCAAAGATGG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>forward_208
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TGACATTTACGGCATGGAGC--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>reverse_2177
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------AGAGATTCACATGGAAAGCGT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>forward_479
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------AGAGGCAGGGAGTTGATTATGA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>reverse_2374
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------ACCTGCAAGATCATCGTACGT------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
