>input_sequence_56131
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----------------------------------------AGATCCAGAAGGGACATAGATGATGGGTGACGGTGCTGAG
AAGGAAAGGGTTTGGGGGTGAGAA-TGAGCCGTTCTGCCGATTTGA-AGATACGACTTCATTCCGCATATCTAGCGAATA
TGCCGTTTCAGATAACGAGTGGGTTCTGCTTCGTCAAGTTAGGTGGGCCAAACACAAGAAAGGACTTTTGATGCGAAATG
AGGCCATTACGATTTCACATGATTACCCGAACCAAGC-----------------GCACGTGAACTGAGCATAGCACAGAC
AG-TTTGGTTCTTTGTCATGAAACGG---------------GTTCAAATTCTAGACTTGATATAGCTGGTCATTCAGTG-
------------------------------------GGAGGAGATATTTACGTCGACTATGAGACACATGTGGTGACTTG
GCCAACATCAAAATGTTGTGGCGGCTTAATATTTGTACGGTGCTCATAACGATAAGGTGTGCGTGG--------------
--------GTGCTTTGATTGTGTGTGTATTGTATTGTGTTAAACTAAA--------------------------------
--------------------------------------------------------------------------------
-----AAAGAAAACTGATCTGGCCCGTTGAGTTGACGGCCGAAGGACTGAGCTCGGGTTCGGTCCCAGTGTGG---GGTG
GGAAGCTCGGCTTAGCCGCACCGGCTCCGGCCCAAACCGACCGGTCATTCCAAACCCTCGCATCCAAGCCGCCTCC----
--------------------ACCCCTCCGCGGATCTC----CCATCCATGGCCGCCGCCGCCCCGGCCCGCAGGCTGCTC
CTGCGCCTGCGCCTCCCACTCCCCCTCTGCAACCCGCCGCCGGCCCCCGTCCCGCTCCTCCCCCACCTGCTGACGCCGCA
CCTCCACCC------------GCAGCCACCGCCGCCGGCGCCTCCGCTCCCGGACCCGAAGCTCCGTGACCTCCTCTTCG
CCTTCCACCCTGCAGTGCACACATACCCGTCCCTCGTCGACGTCCCGAGAGGAGGACCGGGCGGCCGCGACGCGCGGGAG
GACGGAGGGGAGGCCAAGGAGCCGGAGGTGTGGGCGGACAGCGTCAAGAAGAAGCGCAAGCGCAAGATGAACAAGCACAA
GCTCCGCAAGCTCCGGAAGCGCCTCCGCCGCCAGACCTGAGCTCA---------TGGATCCCGGTGAACACCGACGCCGC
GCCCCTTGGCTTGTT-AGCTTCTGCATTTTGAATTTCATTATTCGATTCGATG---ATCCAAAAAGTGGGAGAGGGGGAG
TGATGTGAAGTGA---------------------GATCCATATGATCTCTGTTTGTGGCACACTTCACATGTTTAGATGA
TCTTGACACGGCTCCGCTTCTGCGAGATAACAGATTGATGCGTATCCGGTGTACTCTTTATTAATAGA------------
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>chr5D_1_TraesCS5D01G377400
ATCGAGAAGCTCGTGATCAGTTGGATGAGAAAGAGCCAGCGCGAAAAGATCTACATTGACAACTCGACTTGGGGTCCCGA
GATCGACTCACCGGAGTCAGGATTCCGGGTCCCCTTCAGCAAAATTAACATCTTCGTAGGCTTCATCAGAGGGGTCGCCC
CTGGAGGAGCCATAGGAACAGGCCATGGAGAAGTCGGCCCTGGGGGAGCCAGGAGAGCCGGTCCTGGAAAAGCCAGAGGA
GCCGGCCCTGGAGGAGCCAGAGGAACTGGCCATGGAGAAGCCGACCCTGGAGGAGCCAGAGGAGCCGGCCCTTGAGGAGC
TAGAGGAACCGGCCATGGAGGAGCCAGAGGAACCGGCCATGCAGAAGCTGGCCCAGGAGGAGCCGGTCCTGGAGGAGCCA
AAGGAACCGGCCATGGAGAAGCCGGCCGTGGAGGAGCCAGAGGAGGCAGCCCCGGAGGAGCCAGAGGAACCGGCCATGGA
GAAGCTGGCCCTAGAGGAGCCATGAGAGCCGGTCCTGGAGGAGCCAGGAGAGCCGGCCATGGAGGAACCATGCCTGGAGG
AGCCGACAGCAAAGGTCAGAATTAAGGAGCCCCGCGTACGGCGGAACAATCTCATGGGACAACCCGACTCGCTACAAAGC
ATGTTTATCCATGGAGCATCGCGCGAGTCAGCCATTAATAGCCGGGTCAGGTGGACTCATCCCCCATCATCTTCATTGCG
CCATTTTCCCACTGCGGCCAAGCCAGCTCGGACCGTGCTGTCTTCGCAACCGATTCTCAACTTTTCGCGGGTTTATACTG
TATCATCAAACGCCGAGGCATAAAAATAGCTAAGTCATTTTCTTGCTTTCCCAAGTCGCCTTGGGAGAGGGAAAGGAAAG
CAAAGGCTAAAATTTAATATAATAGTATTTAATAATAAAAAATTAGAGATACGTTTAAGACGTAGCACCCGTCACCATAC
ACGATATAGGAAGAGACGTGGGACTGTATGCCAGCGTCTCAGATCCAGAAGGGACATAGATGATGGGTGACGGTGCTGAG
AAGGAAAGGGTTTGGGGGTGAGAA-TGAGCCGTTCTGCCGATTTGA-AGATACGACTTCATTCCGCATATCTAGCGAATA
TGCCGTTTCAGATAACGAGTGGGTTCTGCTTCGTCAAGTTAGGTGGGCCAAACACAAGAAAGGACTTTTGATGCGAAATG
AGGCCATTACGATTTCACATGATTACCCGAACCAAGC-----------------GCACGTGAACTGAGCATAGCACAGAC
AG-TTTGGTTCTTTGTCATGAAACGG---------------GTTCAAATTCTAGACTTGATATAGCTGGTCATTCAGTG-
------------------------------------GGAGGAGATATTTACGTCGACTATGAGACACATGTGGTGACTTG
GCCAACATCAAAATGTTGTGGCGGCTTAATATTTGTACGGTGCTCATAACGATAAGGTGTGCGTGG--------------
--------GTGCTTTGATTGTGTGTGTATTGTATTGTGTTAAACTAAA--------------------------------
--------------------------------------------------------------------------------
-----AAAGAAAACTGATCTGGCCCGTTGAGTTGACGGCCGAAGGACTGAGCTCGGGTTCGGTCCCAGTGTGG---GGTG
GGAAGCTCGGCTTAGCCGCACCGGCTCCGGCCCAAACCGACCGGTCATTCCAAACCCTCGCATCCAAGCCGCCTCC----
--------------------ACCCCTCCGCGGATCTC----CCATCCATGGCCGCCGCCGCCCCGGCCCGCAGGCTGCTC
CTGCGCCTGCGCCTCCCACTCCCCCTCTGCAACCCGCCGCCGGCCCCCGTCCCGCTCCTCCCCCACCTGCTGACGCCGCA
CCTCCACCC------------GCAGCCACCGCCGCCGGCGCCTCCGCTCCCGGACCCGAAGCTCCGTGACCTCCTCTTCG
CCTTCCACCCTGCAGTGCACACATACCCGTCCCTCGTCGACGTCCCGAGAGGAGGACCGGGCGGCCGCGACGCGCGGGAG
GACGGAGGGGAGGCCAAGGAGCCGGAGGTGTGGGCGGACAGCGTCAAGAAGAAGCGCAAGCGCAAGATGAACAAGCACAA
GCTCCGCAAGCTCCGGAAGCGCCTCCGCCGCCAGACCTGAGCTCA---------TGGATCCCGGTGAACACCGACGCCGC
GCCCCTTGGCTTGTT-AGCTTCTGCATTTTGAATTTCATTATTCGATTCGATG---ATCCAAAAAGTGGGAGAGGGGGAG
TGATGTGAAGTGA---------------------GATCCATATGATCTCTGTTTGTGGCACACTTCACATGTTTAGATGA
TCTTGACACGGCTCCGCTTCTGCGAGATAACAGATTGATGCGTATCCGGTGTACTCTTTATTAATAGATGGAGATGCTGT
GCCATTCCCTGTATTGAGGTCTTTAGTCTAGATGGCTGCATTTTTCATACATACTTGATGACTGCTCTGGTAGTAT--GT
GTGTGTGACCTTGTTTTTAATATTGTTATGTGGTGCTAGAGGAGATATGCAGATACATAGATGCTGTCATTGATAGTTCC
AGGCTGAAACCAGATCAAATGTCTTCCTCCCTAGTCAAAAGATGCACTTCTACTCATGGACCTTTCCGGCTATGCGAAAT
AGTCTTTGCGCCCCAGGGAAGTGCAACACGTGTAGAAGTCGCTGTATGTTACAGTAAATAGCAACACAAAGTGG------
----------TGCACACACGCACGCACGGACAAACTATTCACACTTTCTTCATGTATACCTTGTCCAATTGCCCACTTTG
ATCAATACTATTACCCACTGAACCATGGAAAACAAATGGAGTCATACTCTGCCCTATCGGTGGGCTAGAGTTTCCATATC
TATAGCCAGCGGTGTCAGCCAGGATTTTAACAGCACAATGTTTGCACCAGTGGGGTTTCTGATCTCATGCCAATCACTTG
GATCAAGGTCATGCCATTTTGACAGTACAAAATTGCTTGTACCCATGGGTTACTTGCGTATCAAACTTCTGATATGTCAA
CCATAAACCTTATTTGTAGATATACATAGGCACCGAAATATTTAGTGTCCATTGTAGAATCATGCGTTCCCAGTAGGCCC
CAAGGGATTTAGTTGCCTGCATACCATAATGTCGTATGAGTAGTTTGATCTGAGCATGTAGGACCTGTACTGTTTCGCAA
ACTAATGGATACTTTTCTTTTACTTGAGTAGGTTTGAGGATTGTGATTGCAAGGAGGTTCTCCGGTGCCGCTGCCACACC
GGTTTCAAGCTGATGGTTTCTTCCAGTTATTTTGGTTTGGTTATAGGAGTAGCAGTTCTGGTACCAACAAAGCAATTGCT
GCGGCTGGGC---ACATACCTGCAAACACTGTAATGACAAGGAGCCAGG
>chr5B_1040
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-------------------------------------------------------------------------------G
AAGGAAAGGGTTTGGGGGTGGGATGTGAGCCGTTCTGCCGATTTTGGAGATACGACTTCGTTCTACATATCTGGCGAATA
TGCCGTTTCAGATAACGAGTGGGTTCGG----------------------------------------------------
------------TTTCACATGATTACCCGAACCAAACACACCCTAGCTGGTTTGGCACGTGAACTGAGAATAGCACATAT
GGTTTTGATTGTTTGTGGTGAAACTAGGCTAGCCCATTGGAGTTTAAATTCTAGACTTGATACTGCTGCTCGCACTTTCC
TTAATTTATTATAGCATTTTGGGCGATGTTCATTCAGAAGGGGACATTTCCATCGACTATAATG-----GTGGTGACATC
GGCAATATTAATATGTTGTGACGGCTCAATATTTCGACGGTGCTCATAACGATAAGGTGTGTGTGTGCGCGCGCGTGTGC
GTGCGTACGTGCTTTGATTGTGTGTGCATTGTATTGTGTTAAATTAAAAAAAAAGTCAACGATGACCTGATAAAATCTCA
AGATGATATGTCGGCTCAGTCTCTTGCAGGTGCTTATAAGGATAGGGGGTGTGTGTGAGTATATATGAGCGTGTGTACTT
TGTTAAAAAAATACTGGTCTGGCCCGTGGAGTTGACGGCCGAAGGACTGAGCTCGGGTTCGGTCCCAGTGTGGTGGGGTG
GGAAGCTCGGCTTAGCCGCACCGGCTCCGGCCCAAACCGACCGACCACTCCAAACCCTCGAATCCAAGCCGCCTCCGCCT
CCGCCTCC------------------CCGCGGATCTCCCATCCATCCATGGCCGCCGCCGCCCCGGCCCGCAGGCTGCTC
CTGCGCCTGCGCCTCCCCCTCCCCCTCTGCGACCCGCCGCCGGCCCCCGTCCCGCTCCTCCCCCACCTGCTGACGCCGCA
CCTCCACCC------------GCAGCCACCGCCGCCGGCGCCTCCGCTCCCGGACCCGAAGCTCCGGGACCTCCTCTTCG
CCTTCCACCCCGCCGTGCACCTATACCCGTCCCTCGTCGACGTCCCGAGAGGAGGGCCAGGCGACTGCGACGCGCGCGAG
GACGTAGGGGAGGCCAAGGAGCCGGAGGTGTGGGCGGACAGCGTCAAGAAGAAGCGCAAGCGCAAGATGAACAAGCACAA
GCTCCGCAAGCTCCGGAAGCGCCTCCGCCGCCAGACCTGAGCCGCCGCCGCACGTGGATCCCGGTGAACACCCGACGCCC
CGCGCAC-------T-AGTTTCAGCATTTTGAATTTTACTTGATTTCATGA--TCCATACATGAAGTGGGAGAGGGGGAA
TGATGTGAAGTGAAAAATGCTCCGTGTAATGCCTGATCCATATGATCACTGTTTGTAGCACATTTTACATGTTTAGATGA
TCTTGGCACGGCTCCGCTTCCGCGAGATAACAGATTGTTGCACATCCAGTGTACTC-CTATTAATCGATG-AGATGCTGT
GCACAGCCCCAAA-----------AGTCTAGATGGCTGCATTTTTCATAC----TTGATGACTGCT------CTGTTAGA
ATGTGTGACCTTGTTTTCAATATTGTTATGTGGCGCTATAGGAGATATGCAGATAGATAGATGCTGTCATTGATAGTTCC
AGGCTGAAACCAGATCAAATGTCTTCCTCCCTAGTCAAAAGATGCACTAATACACATGGACCTTTGGGGCTATGCGAAAT
AGTCTTTGCACCTCACGGAACAGCAACACGTGTAGAAGTCGCTGTATCTTACAGTAAACAGTAACACAACGTGGCACACA
CGCACG------------CGCACGCACGGACAAACTATTCACACTTTCTTCATGTATACTTTGTCCAATTGCCTACTTTG
ATCAATACTATTACCCACGGAACCATGGAAAACAAATGGAGTCATGTTCTGCCCTATCGGTGGGCTAGAGTTTCCATATC
TATAACCAGTGGTGTCAGCCATGATTTTAACAGCAAAATGTTTGTACCAGTGGGGTTTCTGGTCTCATCCCAATCAATTG
GATCAAAGTCATGTCATTTCGACAGTACAAAGTTGCTTGTACCCATGGGTTACTTGCGTATCAAACTACTGATGTGTCAA
CCATAAACCTTATTTCTAGATATACA--GGCACAGAAATATGTAGTGTCCGTTGTAGAATCATGCGTTCACAGTAGGCCC
TGAGGGATTTAGTTGCCTGCATTCCATAATGTCGTACGAGTAGTTTGATCTGAGCATGTAGGACCTATACTGTTTCGCAA
ACTAATGGATACTTTTGTTTTAT---AGTAGGCTTGAGGATTGTGATTGCAAGGAGGTTCTCCGGTGCCGCTGCCACACC
GGTTTCAAGCTGATGGTTTCTTCCAGTTATTTTGGTTTGGTTATAGGAGTAGCAGTTCTGGTACCAACAAAGCAATTGCT
GCGACTGGGCACGACGTACCTACAAACACTGTAATGACAAGGAGCCAGG
>chr5A_1474
AAAAAAAC------------------------------------------------------------------------
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-------------CTGGGCTGGCCCGTTGAGTTGACGGCCGAAAGACTGAGCTCGGGTTCGGTCCCAGTG----------
GGAAGCTCGGCTTAGCCGGACCGGCTCCGGCCCAAAGCGACCGACCATTCCAAACCCTCGCATCCAAGCCGCCTCCGCCT
CCGCCTCCGCCTCCGCCTCCACCTCCCCGCGGATCTCCCATCCATCCATGGCCGCCGCCGCCCCGGCCCGCAGGCTCCTC
CTGCGCCTGCGTCTCCCACTCCCCCTCTGCAACCCAGCGCCGTCCCCCGTCCCGCTCCTCTCCCAC---CTGACGCCGCA
CCTCCACCCACCACCGCCACCGCAGCCAACGCTCCCGGGCGCCCCGGCCCCGGACCCGAAGCTCCGGGACCTCCTCTTCG
CCTTCCACCCCGCCGTGCACGTATACCCGTCCCTCGTCGACGTCCCGAGAGGAGGGCTGGGCGACCTTGACGCGCGCGAG
GACGGAGGGGGGGCCAAGGAGGCGGAGGTGTGGGCGGACAGCGTCAAGAAGAAGCGGAAGCGCAAGATGAACAAGCACAA
GCTCCGCAAGCTCCGGAAGCGCCTCCGCCGCCAGACCTGAGCTCA---------TGGATCCCGGTGAACACCCGACGCCC
CGCGCAC-------TTAGTTTCAGCATTTTGAATTTTAGTTGATTTCATATCCTCCATACATAAAGTGGGGGAGGGGGAA
TGACGTGAAGTGAAAAATGCTCCGTGTAATGCCTGATCCATA--ATCACTGTTTGTAGCACATTTCACATGTTTAGGCGA
TCTTGACACGGCCCCGCTTCGGCGAGGTAAGAGATTGTTGCGCATCCAGAGTACTG-TTATTAATAGATGGCGATGCTGT
ACCCATCCCTATATTGAGGTC-TTAGTCTAGATGCCTGCATTTTTCATAT----TTGACAACTGCTCTGTTACTGTTAGT
ATGTGTGACCTTGTTTTCAATACTGTTACGTGGCGCTATAGGAGATATGTAGATAGATAGATGCTGCCATTGATAGTTGC
ATGCTGAAACCAGATTAAACATCTGCCTCTCTAGTCCAAAGATGCAGTTCTACACATGGATCCTTGCGGCTGTGTGAATT
AGTCTTTGCACCTCAGGGAACAGCAACACATGTAGAAGTTGC--TATCTTACAGTAAACGGTAACACAAAGTGGCGCACA
CATGCACACATGCACACACGCACGCACGGACAAACTATTCACACTTTCTTCATGTATACCTTGTCCAGTTGCCCACTTTG
ATCAGTACTATTACCCACTGAACCATGGAAAACAAATGGAGTCATGCTCTGCCCTATTGGTGGGCTAGAGTTTCCATATC
TATAATCAGTGGTGTCAGCCATGATTTTAACAGCACAATGTTTGTACCAGTGGGGTTTCTGATCTCATGCCAATCACTTG
GATCAAAGTCATGCCATTTTGACAGTACAAAGTTGCTTGTACCCATGGGTTACTTGCGTATCGAACTTCTGATATGTCAA
CCATAAACCTTATTTCTAGATATACATAGGCACAGAAATATTTAGTGTCCATTGTAGAATCATGCGTTCCCAGTAGGCCC
TAAGGGATTTAGTTGCCTGCATACCATAATGTCGTACGAGTAGTTTGATCTGAGCATGTAGGACCTATACTGTTTCACAA
ACTAATGGATACTTTTGTTTTACTTGACTAGGCTTGAGGATTGTGATTGCAAGGAGGTCCTCCGGTGCCGCTGCCACACC
GGTTTCAAGCTGATGGTTTCTTCCAGTTATTTTGGTTTGGTTATAGGAGTAGCAGTTCTGGTACCAACAACGCAATTGCT
GCGACTGGGC---ACGTACCTACAAACACTGTAATGACAAGGAGCCAGG
>SNPs
-SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
--------------------S--S--------------------SS-------------S---SS-------S-------
--------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS-----------------------S--------------------------------S--------S-S
S------S--S-----SS------SS------------------S-----------------SS----S--SSS-SS-S-
-------------------------------------S---S--S----S-S--------S-SSSSSSS--------S-S
-S---S--S--S--------S-----S-------SS-------------------------S---S--------------
--------------------------S----------------S------------------------------------
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--------S--S----S---------------------------------------------------------------
-------------------------------------------SS-----------------------------------
-----------------------S-S------------------------------------------------------
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------------------------------------------------------------------S-------------
----------S--S------SS---------------------------------S-------S------------S---
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------------------------------------------------------------------------SSSSS-S-
SS-S-SSSSSSSSS----S---S-------------S-S-SSSSSSSSS--SS-----S--S-----------------S
-----------------------------------------------S--------S-----S-----------------
--------------------S----------------S----S----S--------S-----------------------
---SS-----S----------S----------------------------SSSS---------------S--S-S-----
S----------------S---------------S----S----------------S------------------------
-----------------------------------------------------S-----------S--------------
---------S--S-------SS-------------------------S----------S--S------------------
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---------------------------------------------S----------------------------------
----S----S-----------S----------------------S-----------------------------------
------S------------------------S------------------------------------------------
---------------S-----------------S----------------------------------------------
S-----------------------------------S-----------------------------S-------------
----------------S---------------S-----------------------------------------------
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---S-----------S-----S---------------------------
>forward_495
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---------------------------------------------------------------------------ATGGA
GAAGCTGGCCCTAGA-----------------------------------------------------------------
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>reverse_1692
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-----------AACTGATCTGGCCCGTTGAG-------------------------------------------------
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>forward_695
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-----------------------------------TAATAGCCGGGTCAGGTGGA-------------------------
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>reverse_2382
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-------------------------------------------------------------AAAAGTGGGAGAGGGGGAG
T-------------------------------------------------------------------------------
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>forward_1180
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----------------------------------------AGGTGGGCCAAACACAAGAA--------------------
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>reverse_2862
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-------------------------------------------------------------CAACACAAAGTGGTGCACA
CA------------------------------------------------------------------------------
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