>input_sequence_56117
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----------------ATGAATCGACGCTCGCGCCGCAGAGGCAAGCGCGGGCGCACGAGCCCGGACCCCCAGGCGAAGC
GCCGCCGCGGCCCGCTGGAGTCGATGCCCGGCGAGCTGGAGGCCGCTCCAGCTCCAGTGCCGGCGCCGGCGCCGGCTGCG
GCTGCGCAGCCGTCCGTAGTCATGGTCGCCGGGCTGCCGCCCGGGTGCGGAGTGATAGAGCTAAAGTCGCGCCTGGAGGC
GTACGGCACCA-TCGCGCGCACTCGCATAGACGCCGCCGCGGCCACCGGGCACGTCACCTTCCGCTCCGCTGCCGCTGCC
ACGGCCGCCATTGCCGCTTCCCTCGACCCCGAGTGCGGCATCACCATCGGATCCAAGAAGGTAAAGATCTAC-----GTT
TGCTGAAGCGTGATGTCGGAGTTACTGGATTCAGCATCAGGGGAGCCAATTCTTTTACTAGATACGGCCAATGGTAACTT
GCTGTACATCTAGCAAGATCCGGTGAAGGTTCCAGCCTTTTTTTATTAGGTTTATTACTTATAGTGCCAAAACAGATGGA
TTTGTTGAAGTGCAAAGCAGTTATTTGATGGTGAATGCGCGAATGGCACCGATGCTTCTTCCAAACCTAGGCCAGACCAG
GCATTGGTAGTCCATTACCCCTTTTAGGTTCATATTATGTTGGTAGGTTTTAGCTCAGTTCAGACATGTGAAACCCAATC
TGGCTGTTCACTTTTGTCATTCACTTGGTAGTTTAATTTTTTTTATTTACCCAAGCATTCTAGATTTTCTTAATATAATC
AATGTGCATGCTCATCTAGCTCTGCAAAGTTGGATTGACTATTTGATATGCTGTGCTTCATATAGCAGTAACAATAACTG
ATTAAAATGCGAGGACTTGCAAAATTGAATACAGACCAGAATTAAGCATTTATATCTGTGATATACTGCTTGACATCACC
CAATAGACTCTGTTGATCTCTCTGAGATT------------GTTGCTCAATTCATATGAAGCGTACGGTTGTGGGTTTCA
GATGTATACTGTGTCTTGCTTGCACTTTATTTGCCAACCTTTGGTACTCAGATTGGTGTTTCTTTCGTTTGATACAGGTT
TTAGTTGTACAGGCAAGTGAGGCGCCAAATAATTCGACAAGCGTAGTTCAATCAGACCCAGCAGATGCGAGTAACAATAT
TGCTAGTGATGCTTTGGCCATCCCAAGCTCCAGAATAGCTCCAGAGGCGATCCACAAAGCGCGAGAAATAGTCGCTTATG
ATGATCTGTTCTGA------------------------------------------------------------------
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-----------------
>chr3D_1_TraesCS3D01G312100
ATCGTTCAAGAAAAATAGTACTTTTTCTTATATGTGATATTTTGAAAATGTCCATTACATATGTTTTCCATCCATTTAAA
TTGACTAGATAGGATAGTTTGATGCTCCCACAAAATATATTA-TTGGTGCCTAGCTTTCGTTCC-TTTTTAAAGAAG-AA
ACTACTAGCTAGCTTTTGTTCTTTTC-CAAAGAAAAAC-TACTAGCTAGCTTAGTGATATATATGTACGTGTAGAAACAT
ATGTCTACATGTCATTGTGTACAGTGGGGCCGCCGCCATTGCATGTCAACGCTCATCAATG-------------------
----------------------TGAAGCAGTTGATGGTCGGCTACAAATGACATGGACTGGAAAGGAGCAATGTCAGATT
C-------------------AGGGGGCAAGGGAGCTAGGGTCTGAAGTTTGCACGAGCCGCAACATCAGACGGCGATTGG
AAGGGGAGGAGGTCTCGACCAGATATCAATCATGATCTCGCCTAACACAAACAAGCATGTTTTG----------------
---CTTGCTCCCACCGTTACTCCAGA-----------------------------------------TTTTAAATTTAGC
TCATGACATCATGTCCAAATTTATTAATAATGTTATTACTTCAAATTTTAATTTTAATTTCAAAATGAATTAATAAGCTG
AACTAAGTTGACTCGGGACCAAATCTCATGTCTCAAATTGACATCCTGAGAAATCC-TACCCTCATTTGATTCATTATTC
CACATGTTGTTCATTGTTTTGGAAGCTCACTGTGCCG---AATGACCATTGGTCGTGATGTTAAAATAGAGGGCATGGAC
TTG----TGAAGAGTCATGAGAATGCTTATCATATTAGAGACGTGTGTTATTGTTTGATCTCCCGTTGCAACGCATGGAC
ACATTTACAG---GTATAAATCTAAGTTCTTCTCCGAAGAAATTATAAATCAAGTAGCACAACCGTATGTCAGAAAAACA
ACGCCGCAGAAAGTCTCAAAAGGCGCCCAGCCACAAAACCAACTGAAGTCTGAGCTCTGAAGCGGCGGCCACCCTCAATC
TGTACGGACTAGAGTCATGAATCGACGCTCGCGCCGCAGAGGCAAGCGCGGGCGCACGAGCCCGGACCCCCAGGCGAAGC
GCCGCCGCGGCCCGCTGGAGTCGATGCCCGGCGAGCTGGAGGCCGCTCCAGCTCCAGTGCCGGCGCCGGCGCCGGCTGCG
GCTGCGCAGCCGTCCGTAGTCATGGTCGCCGGGCTGCCGCCCGGGTGCGGAGTGATAGAGCTAAAGTCGCGCCTGGAGGC
GTACGGCACCA-TCGCGCGCACTCGCATAGACGCCGCCGCGGCCACCGGGCACGTCACCTTCCGCTCCGCTGCCGCTGCC
ACGGCCGCCATTGCCGCTTCCCTCGACCCCGAGTGCGGCATCACCATCGGATCCAAGAAGGTAAAGATCTAC-----GTT
TGCTGAAGCGTGATGTCGGAGTTACTGGATTCAGCATCAGGGGAGCCAATTCTTTTACTAGATACGGCCAATGGTAACTT
GCTGTACATCTAGCAAGATCCGGTGAAGGTTCCAGCCTTTTTTTATTAGGTTTATTACTTATAGTGCCAAAACAGATGGA
TTTGTTGAAGTGCAAAGCAGTTATTTGATGGTGAATGCGCGAATGGCACCGATGCTTCTTCCAAACCTAGGCCAGACCAG
GCATTGGTAGTCCATTACCCCTTTTAGGTTCATATTATGTTGGTAGGTTTTAGCTCAGTTCAGACATGTGAAACCCAATC
TGGCTGTTCACTTTTGTCATTCACTTGGTAGTTTAATTTTTTTTATTTACCCAAGCATTCTAGATTTTCTTAATATAATC
AATGTGCATGCTCATCTAGCTCTGCAAAGTTGGATTGACTATTTGATATGCTGTGCTTCATATAGCAGTAACAATAACTG
ATTAAAATGCGAGGACTTGCAAAATTGAATACAGACCAGAATTAAGCATTTATATCTGTGATATACTGCTTGACATCACC
CAATAGACTCTGTTGATCTCTCTGAGATT------------GTTGCTCAATTCATATGAAGCGTACGGTTGTGGGTTTCA
GATGTATACTGTGTCTTGCTTGCACTTTATTTGCCAACCTTTGGTACTCAGATTGGTGTTTCTTTCGTTTGATACAGGTT
TTAGTTGTACAGGCAAGTGAGGCGCCAAATAATTCGACAAGCGTAGTTCAATCAGACCCAGCAGATGCGAGTAACAATAT
TGCTAGTGATGCTTTGGCCATCCCAAGCTCCAGAATAGCTCCAGAGGCGATCCACAAAGCGCGAGAAATAGTCGCTTATG
ATGATCTGTTCTGATAGGCATTCTTCCTCTAGATAAGGGAGAAATCAGTGTGCTGTTGTGCAATATTAGGGTCTTTAGCT
GTCTAACTGTAACTGA--GAGGGGTATCTCCTATCTCGTGATGTTGCGCTGTAGGCCACAACTAATTGCTTGTCTTCATC
ATTGAACCTATGTGTAGATCAAGCAGTGTCGTACTATGTGACTTTTCACTGAATTAATTTATTACCATGCAAATCAGGCA
TTATACATGATTACATTTGTACTAGAAACAAAGTGGTGTAAGCAAAA--------AGAAAGCAACTCCTGGTTAAACTTT
CTGTAATGTTG------------------------TAAAATTTAAAGGGCACATCATCTGTACTCCATGTATATCATGGA
AGAAATGGTATCAAATAGTTGGCCTATACACACAAGCTATTATTTACACATTAGTATCTGGGAAATGAGCAAGTTTCTTT
CTCAGTGTGGGCGAGATTCTTTCTGCAGCATGATGTCATTGGACCTTGCCAGCATTT-CACTGAATGGTTTGCCTCATCT
TGGTGATAGTTGGGTGCTTTATCAACTTCAGTCTGTTGGTACACCACTTACTTGAGCTCTTTCATTAATGGTGACTTTAC
TGACTCAGAACACATTGCAGCTGAACTGAGCAATTATGTGCTATTCTTGCAGCTTCTTGCCTTCCTTCTGGGGTACCACT
CAGCATGTCTCACTAATGTTGCTACAAAATTTTAAAATAAAGAAAGTTAAGGAGAATCCCAAGTGTCACAACAGGTCACC
CTCCAAAATCTGTGTGCTGGTAAGATAAACGAAGACGTAAATTCTAAGCCAATGTCACAACAGGTTAAATACAAGGAATA
GCCAAAATGCATCATTTGTTGAAAGAGGAAAAGAGCCTTGTAATAATATCTGCCTGCCCAATTATTCATA--------TT
GATATGACTGGTTGATTACTGTCAGAAGTAACCAACGTTCTACACAGATAGATTGGTCAAAAAAAGCAGACATAATTCTA
ACATTAACTTGGTCGCA
>chr3A_1
ATCATTTAAGAAAAATAGTACTTTTTCTTATATGTGGTAATTCGAAAATGTCAATTATATATGTTTTCCACTCATTTAAA
TTGACTAGATAAGATAGTTAGATGCTCTCACAAAATATATTATTTGGTGCCTAGCTTTCGCTCCTTTTTTTTAAAAAAAA
ACTACTAGCTAGCTTTTGTTCTTTT-TCAAAGAAAAAC-TACTAGCTAGCTTAGTGATATATATGTACGTGTAGAAATAT
ATGTCTACATGTCGTTGTGT--------------------------------------ATG-------------------
----------------------TAAAGCAGTTGATGGTCGGCTACAAATGACATGGACTAAAAAGGAATAATGTCCGATT
CGCGCGCGCGCGGGGGGGAGGGGGCGCAAGGGAGGTAGGGCCTGGAGTTTGCACAAGCCGTGACATCAGACGGTGATTGG
AAGGGCAGGAGGTCTCGACCAGATATCAATCATGATCTTGCCTAACACAAACAAACATGTTTTGCTTGCTCCCACCGTTA
CTCCAGATTAATCTACTTGATGTTATTGTTACTATT--------------------------------------------
----------------AAATTTGTTCATAATATTATTTATTT---------------------------TTAATAAGCTG
AAGTAAGTTGACTCGGGACCAAATCTCATGTTTCAAATTGACATCCTGAGAAATCC-TACCCTCAGTTGATTCATTGTTC
GACATGTTGTTCATTGTTTTGGAAGCTCACTGCGCCG---AATGACCACTGGTTGTGATGTTAAAACAGAGGGCATGGAC
TTG----TGAAGAGTGGTGAGAATGCTTATGATATTAGAGACGTGTGTTATTGTTTGATCTCCCG--------------C
ACATTTACAGGTAGTATAAATCTAAGTTCTTCTCCAAAGAAATTATAAATCAAGTAGCACAACCATATATCAGAAAAACA
ACGCCGCAGA--GTCTCAAAAGGCGACCAGCCACGAAACCAACTGAAGTCTGAGCTCTGG---------CACCCTCAATC
TGTACGGACTAGAGTCATGAATCGACGCTCGCGCCGCAGAGGCAAGCGCGGGCGCACGAGCCCGGACCCCCCAGCGAAGC
GCCGCCGCGGCCCGCTGGAGTCGATGCCCGGCGAGCTGGAGGCCGCTCCAGCTCCAGC----------------------
--------GCCGTCCGTAGTGATGGTCGCCGGGCTGCCGCCCGGGTGCGGGGTGATAGAGCTAAAGTCGCGCCTGGAGGC
GTACGGC-CCCGTCGCGCGCACTCGCATAGACGCAGCCGCGGCCACCGGGCACGTCTCCTTCCGCTCCGCTGCCGCTGCC
ACGGCCGCCATTGCCGCTTCCCTCGACCCCGAGTGCGGCATCACCATCGGATCCAAGAAGGTAAAGATCTAC-----GTT
TGCTGAAGCGTGATGTCGCAGTTGCTGGATTCAGCATCAGGGGAGCCAATTTTTTGCTAGATTCGGGCCAATGCTAACTT
GCTGTACATCTAGCAAGATCCGGTTAAGGTTCCAGCCTTCTTT------------TACTTGTAGTGCCAAAACAGCTGGA
TTTGTTGAGGTGCAAACCAGCTAGTTGATGGTGAATGCGTGAATTTCCCTGATGCCTCTAACA-----AGGCTAGACCAG
GCATTGGTAGTCCATTACCCCTTTTAGGTTCATATTATGTTGGTAGGTTTTAGCTCAGTTCAGACATGTCAAACCCAATC
TGGTTGTTCACTTTTGTCATTCACTTGGTAGTTTAA---TTTTTATTTACCCAAGCATTCTAGATTTTCGTAATCTAATC
AATTTGCATACTCAT-TATCTCTGCAAAGTT-GATTGACTATTTGATATGTTGTGCTTCATA--GCAGTAACAATAACTG
ATTAAAATGGCAGGACTTGCAAAATTGAATACAGACCAGAATTAAGCATTTATATCTGTGATATACTGCTTGACATCACC
CAATAGACTCTGTTGATCTCTGTGAGATT------------CTTGCTCAATTCATATGAAGCGTATGGGTGTGGGTTTCA
GATGTATACTGTGTCTTGCTTTCACTTTATTCGCCAACCTTTGGTACTCAGATTGGTGTTTCTTTCGTTTGATACAGGTT
TTAGTTGTACAGGCAAGTGAGGCGCCAAACAATTCGACAAGCGTAGTTCAATCAGACCCAGCGGATGCGAGTAACAATTT
TGTGAGTGATGCTTTGGCCATCCCAAGCTCCAGAATAGCTCCAGAAGCAATCCACAAAGCGCGAGAAATAGTCGCTTATG
ATGATCTGTTCTGATAGGCGTTCTTCCTCTAGATAAGGGAGAAATCAGTGTGCTGTTGTGCAATATTAGGGTCTTTAGGT
GTCTAACTGTAACCGA--G----GTATCTCCTATCTTGTGATGTTGCACTGTAGGCTGCAACTAATTGCTTGTCTTCATC
ATTGAACCTATGTGTAGATCAAGCAGTGTCGTACTATGTGAGTTTTCACTGAATTAATTTACTACCATGCAAATCAGGCA
TTATACATGATTACATTCGTACTAGAAACAAAGTGATGTAGGCAAAAAAGAAACCAGAAAGCAACTCCTGGTTAACCAAA
ATTGTGTTCTCGACCAGCATAAAAAGTAGCAACAATAAAATTTAAAGGGCACATCATCTGTACTCCATGTATATCCTGGA
AGAAATGGTATCAAATAGTTAGCCTATACACACAAGCTATTATTTACACATTAGTATCTGGGAAATGAGCAAGTTCCTTT
CTCAGTGTGGGCGAGATTCTTTCTGCAGCATGATGTCATTGGACCTTGCCAGCATTTTCACTGAATGGCTTGCCTCATCT
TGGTGATAGTTGGGTGCTTTATCAACTTCAGTCTGTTGGTACACCACTTACTTGAGCTCTTTCA--AATGGTGACTTTAC
TGACTCAGAACACATTGCAGCTGAACTGAGCAATTATGTGCTATTCTTGAAGCTTCTTGCCTTCCTTTTGGGGTACCACT
CAGCATGTCTCACTAATGTTGCTACAAATTTTTAAAATAAAGAAAGTTAAGGAGAATCCCAAGTAGT-------------
------AATCTGTGTGCTGGTAAGATAAACGAAGACGTAAATTCTAGGCCAATGTCACAACAGGTTAAATACAAGGTATA
GCCAAAATGCATCATTTGTTGAAAGAGGAGAATAGCCTTGTAATAATATCTGCCTGCCCAATTATTCATAGGATAGTGTT
GATATGACTGGTTGATTACTGTCAGAAGTAACCAACGTTCTACACAGATAGATTGGTCAAAAAAAGCAGACATAATTCTA
ACATTATCTTGGTCGCA
>chr5B_128
GCCAGC--------------------------------------------------------------------------
--------------------------------------------------------TTTGTTCC-TTCTTGAAGAAAAAA
ACTAATAGCCATCTTTTGTTCTTTTTTCAAAGAAAAACTTACTAGCTAGCTCAGTGCTATATATGTACGTGTAGAAACAT
ATGTCTACACATCGTTGTGT--------------------------------------ACAGTGGCTCGGCCATCGTCTT
TGCATCCCTGCGCCCACCAATATGAAGCAGTTGATGGTCGGCTACAAATGACGTGGACTGAAAAGGAGCAATTTTGGATT
C-------------------GCGGGGCAGGGGAGTTATAGCCTGGAGTTCGCATGAATCATGACACCAGGCGGCGATTGG
AAGGGGAGGAGGTCTCGACCAGACT---ATCCCGATCTCACCTAACACAAACAAGCATGTTTTG----------------
---CAGATTAATCTACTTGATGTTATTGTTAATAC--------------TATTTCTTTCCATTTTACTATTACATTTAGT
GCATCACATCAGGTCCAAATTTATTAATAATGTTATTCCTTCAAAATTACC-TTAAATTTCAGAAGGAACTAATAAGCTG
AATTAAGTTGACTCGGGACCACATCTCATGTTCCAAATAGACATCCTAAAAAAACCATACCCTCAATCGATTCATTGTTC
AACATGTTGTTCGTTCTTTTGAAGCTGGCAGTTCATGTCAAATGACCATTGGCTGTGATGTTAAAGTAGAGGGCGTGGAC
TTATATATAAAGGGTCATGAGAATGCTTACCACATTAGAGTCTTGTGTTATTGTTTGATCTCCCGTTGCAACGCACGGGC
A-------------------------------------------------------------------------------
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>chr4D_143
--------------------------------------------------------------------------------
---------------------------------------------------------------C-TTTTTAAAGAAAAAA
ACTACTAGCCATCTTTTGTTCTTTT-TCAAAGAAAAAC-TACTAGCTAGCTTAGTGCTATATATGTACGTGTAAAAACAT
ATGTCTACACGTCGTTGTGT--------------------------------------ACATTGGGTTGGCTGCCACCTT
TGCATCCA-GCGCCCACTAAAATGAAGCAGTTGATGGTCGGCTAAAAATGACGTGGACTGAAAAGGAGCAATTTTGGATT
C-------------------GGGGGGCAAGGGAGCTATGGTCTGGAATTCGCATGAATCGCCATATTAGGCGGCGATTGG
GAGGGGAGGAGGTCTCGACCAGACT---ATCCCGACCTCACCTAACACAAACAAGCATGTTTTA----------------
---CAGATTAATCTACTTGATGTTATTGTTATTTCTAAATTTGTTCATATATTTCTTTCCATTTCGCTATTAAATTTAGC
TCATGACATCAGGTCCAAATTTATTAATAATGTTATTCCTTTAAATTTTATTTTAAATTTTAGAAGGAACTAATAAGTTG
AATTAATTTGACTCGGGGCCACATCTCATGTTCCAAATAGACATCCTGG-AAAACCATACCCTCAATTGATTCATTGTTT
GACATGTTGTTCGTTGTTTTGAAGCTGTCCGTTCATGTCGAGTGACTATTGGCTGTGATTTTAAAGTAGAGGGAGTGGAC
TTATACATGAAGGATCATGAGAATACTTATCATATTAGAGACTTGTGTTATTGTTTGATCTCCCGTTGCAACGCACGGGC
A-------------------------------------------------------------------------------
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>chr3B_928
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-----------------------CGACCAGCCACAAAACCAACTGAAGTCTGAGCTCTGAAGCGGCGGCTACCCTCAATC
TGTACGGACTAGAGTCATGAATCGACGCTCGCGCCGTAGAGGCAAGCGCGGGCGCACGAGCCCGGACCCCCCGGCGAAGC
GCCGCCGCGGCCCGCTGGAGTCGATGCCCGGCGAGCTGGAGGCCGCTACAGCTCCAGTGCCGGCGCCGGC------TGCG
GCTCCGCAGCCGTCCGTAGTGATGTTCGCCGGGCTGCCGCCCGGGTGCGGAGTGATAGAGCTAAAGTCGCGCCTGGAGGC
GTACGGC-CCA-TCGCGCGCACTCGCATAGACGCCGCCGCGGCAACCGGGCACGTCACCTTCCGCTCCGCTTCCGCTGCC
ACGGCCGCCATTGCCGCTTCCCTCGACCCCGAGTGCGGCATCACCATCGGATCCAAGAAGGTAAAGATCTACAGTACGTT
TACTGAAGCGTGATGTCGGAGTTGCTGGATTCAGCATCAGGGGAGCCAAAATTCTGCTAGATTCGTT-CAATGCTAACTT
GCTTTACATCTAGCAAGATCCGGTAAAGGTTCGAGCCTTCTTTACTAGGT----TTACTTGTAGTGCCAGAACAGTTGCA
TTTGTTAAAGTGCAAGCCAGCCATTTGATGGTGAATGCGCGAATTTCACTGATGCTTCTTACA-----AACCTAGGCCAT
TCCCTAT--------------TTTTAGGCCCATATTATGTTGGTATGT---------------------GAAACCCAATC
TGGTTTTTCAGTTTTGTCATTCATTTGGTTATTTATT---------------------------TTTTCTTAATCCAATC
AATTTGCATGCTCATCTAGCTCTGCAAAGTTGGATTGACTATTTGATATGTTGTGCTTCATA--GCAGTAACAATAACTG
ATTAAAATGCCAGGACCTGTAAAAATTAATGGAGACCAGAATTAAGCATTTATATCTGTGATATACTGTTTGACATCACC
CAATAGGCTCTGTTGATCTCGGTGAGATTGTTGCTAACTTTGTTGCTCAATTCGTATGAAGCATACTGTTGTGGGTTTCA
GATGTATACTGTGTCTTGCTTGCACTTTATTTGCCAACTTTTGGTACTCAGATTGGTGTTTCTTTCGTTCGATACAGGTT
TTAGTTGTACAGGCAAATGAGGCGCCAAATAATTCGACGAGCGTAATTCAATCAGAGCCGGCGGATGCGAGTAACAATAT
TGCAAGTGATACTTTGGCTATCCCAAGCTCCAGAATAGCTCCAGAAGCGATCCACAAAGCGCGAGAAATAGTCGCTTATG
ATGACCTGTTCTGATACGCACTCTTCCTCTAGACAAGGGAGAAATCAGTGTGCTGTTGTGCAAAATTAGGGTCTTTAGCT
GCCTAACTGTAACCAAGGG----GTATCTCCTATCTCATGATGTTGCGCTGTAGGCCGTGACGAATTGCTTGTCTTCATC
ATTGAACCTATGTCGTACTGTGTAGCAGAAATTTGCTTCTAACATCGTTCAAAAGATG----------------------
--------------------------------------------------------------------------------
---------------------------------AAAAAAAATTAAAGGGCACATCATTTGTACTCCATGTAT--CATGGA
AGAAATGGTATCAAATAGTTGGCCTATACACACAAGCTATTATTTACACATTATTATCTGGGAAATGAGCAGGTTTCTTT
C-CAGTGTGGGCGAGATTCTTTGTGCAGCATGATGTCATTGGACCTTGACAGCATTT-CACTGAATGGCTTGCCTCATCT
TGGTAATAGTTGGGTGCTTTATCAACTTCAATCTGTTGGTACACCACTTACTTGAGCTTTTCCATTAATGGTGACTTTAC
TGACTCAGAACACATTGCAGCTGAACTGAGCAATTATGTGCTATTCTTGAAGCTTCTTGACTTCCTTTTGGGGTACCACT
CAGCATGTCTCACTAATGTTGCTACAAAATTTTAAAATAAAGAAAGTTAAGAAGAATCCCAAGTAGT-------------
------AATCTGTGTGTTGGTAAGATAAACGAAGACGTAAATTCTAGGCCAATGTCACAACAGGTTAAATACAAGGTATA
GCCAAAATGCATCATTTGTTGAAAGAGGAAAAGAGCCTTGTACTAATATCTGTCTGCCCAATTATTCATAGGATAGTATT
GATATGACTGGTTGACTACTGTCAGAAGTAATCACTGTTCTACACAGATAGACTGGTCAAAAAAATCAGGCATCGTTCTA
ACATTATCTTGGTC---
>SNPs
---S--S-----------------------------S--S--S---------S----S------------SS--------
-----------S-------S-------S------------------------------------------------S---
-------------------------S------------------------------------------------------
-------------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
------------------------------------------------------------S--------------S----
--------------------S-----------------------S----------------S------------------
--------------------------------------------------------------------------------
----SSSS-SSSSSSS--SS-SSSSS------------------------------------------S-----------
-----------S-------------------------S------------S---S-------S--S--------------
--S----------------------------S---------------------------------S----------S---
S----------------------------------------------------S--------------------------
---------------------------------------------------------------------------S--S-
-----------------------------------S----------------------------S---S-----------
----------SS-------------S------------------------------------------------------
-----------------------------------------------------------------------S--------
----------------------------------------------------------------------SSSSSS----
---S----------------S-----------------------------------------------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S---------------------------S---SSSSSSS-SS--------S------
------------------------S--------------S---SS-SS-SSSSS------S--------------S----
----------------S---S-----------------------SS---S----------S--SSSSS----S-------
--------------------------------------------------------------------------------
---S---------------------------------SS-----------------------------------S-----
---S----------------------------------------------S-----------SS----------------
----------S---------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
---S-----------------------------------------S----------------------------------
--------------------------------------------------------------------------------
-------------S-----SSSS----------------------------------S----------------------
-----------------------------------------S-------------------S------------------
-----------------S-----------------S----S----------------------------------S-SSS
S-SSSS-SS-S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
-------------------------------------------------S-----------------S------------
----------------------------------------------------------------SSSSSSSSSSSSSSSS
SSSSSS----------------------------------------S-----------------------------S---
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------S----------
>forward_271
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-----------TCATTGTGTACAGTGGGGCC-------------------------------------------------
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>reverse_1741
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------------------------------------------------------------CCAAACCTAGGCCAGACCAG
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>forward_1572
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--------------------------------AGCATCAGGGGAGCCAATTC----------------------------
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>reverse_3108
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-------------------------------------------------------------------CTGGGGTACCACT
CAGCATG-------------------------------------------------------------------------
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-----------------
