>input_sequence_56089
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---------------ATGGCTTCGCCGTCCCTCCTGACCGTGCACCTGCGCGGGTCTGCTTCGCCGCCCGACGCCGCCTC
---GTCGGTGGCGATCGAGGTGGAGGGAGGCGACGGGGTGGACCTCGCCCAGGTGGGCCTCGCGCTGGGGCTGGATCCGG
CCACTGTCGGCCTCAACGGCTACTTCCTGAGCTGCGGGTCCGGCTACGTTTCCTTGGCGGTCACCTGGGGCGAGCTCCTC
GCCTTCTTCGCCACGGGCGGGCAGCCCACGGGTGCCGACCCCGCCGAGCCCGTCGCCGTCGACGGAGGGCCCGTACCTTC
GCCCCCA------GGTGCGCCTCCCTTTCC--------------------------------------------------
---------------------------------------------------------GGGAAGATTGCATGTTTGCATCG
TGACATTTAGCGTGCCACT-----------------------------------AGATGTCAGTAGCAACCTGTTGACTG
TTGTTCTCTGATTCTCTGAATTTTTTGCTCCTTTAAACTAGTAGCATAAATAA-----TTGTTCAGGGTCCAATTGTTCA
GTT-------TCATATGTTAGTACACATTATATAGTAGTACTA-----AGTACTAATCTATTTGAGCAAGTTGGATACTG
ATTATCACTAAATGCGTTGGGA----------------------------------------------------------
------------------------------TATTAAAGTGTCGCGGTAGCTAT---------------CAACTCAACTGT
ACTGTTCT--------------TGTTCATAGATTTGCAGCATTTTCATGTGG--------TTGTTGCGAAGCAATTATCT
CACATCAAGTGTTATTTCCTGATCATGTGATTCAGTACGTCATCTGTTTA-TGCTACAAGAATGCGTTTATGTCTACTGC
ACTTGAAGAAGTTAAACAAAATGTGATATTTTCCACGAAATTTTGATCTGAATCTGCAAATAATATCTCTGTTAGAGCCC
AGAGTTGTTCTGTCCTCAAAGCGAAAGCCCGGGTTGGAGACCGAAAATTGTTCCAAGAAGAGCAAGCTCCAACACAACAG
CTCCGCTCAGTCAAAAGCAGGCGAAGAGCTACTTGCCGATGAGATCACCTTTGGTTTGAAGAGAAGACTCACATTGGACG
AGGCTAGTCCATCTAAGAAGATTAAGCAAGTAGACT------------CCGGTGAGTGACAACTGA--CAACTGAACAAA
TCCTTCAAGAGTCTTCACCAGTTA--------CTGTATTTATA----TCACCAATAATCTACCAAATATTCTGAAATCTG
AAAGGTTCTTGTTTGGTT---TATTGCATTGGTTGGTTAATCAATGAAGTAGAAGCACAGCAGCCAGTTAAATACTCTTG
CAGCTTCGCCAGCAGTCACGACAA-GCGGCCATCGGATGAGGAGATGGTCATCTCACTGTCGCGCAAGGGAGTCTGGTG-
-A------------------------------------------------------------------------------
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------
>chr3D_1_TraesCS3D01G419400
TTCATTTTCTTTCCTTCTTCTTTTTTCATGTTCATTTTTTCTTTTCATTTATTATTCATTTTATTTATTTTCATTTTATT
TTGCGAACATCTTTTCAAATTTGTGACTATTTTCTAGAAAACGTGAATCGG-TTTTAAATTATAAACATTTTTCTAATTT
GTAGACTTTTTTTTCAAATTCTTGAACATTGTTTTAAAAATGCATGATTATTTTTCTTAAATCGGGTACATTTACCAAGT
CCGTGAACATTTTTTTTAACTTTTAGTGAAAGGAGCCCACATTTTTTTTGGAATAGACAACATTTTGGAATCATTGATCA
TTTTTTGAAATTTGGTATCATGTTTTGAAATTCATCCACATTTTTTGAATACATATACAATTTTTTAAATCTGGAACATT
TTTTGAACTGGTGAAA-TTTTTGTAATTCATCAACATTTTGTGATTTTTGTGAAAATTTTCTAAAACATTATGAACATA-
TTTGAATTCACGAACATTTTAAGAATATCCAAGAATGTTTTTCGGAAAATAATGAACATTTTTCGTTTGCCAAACA---G
TTTTTGCAAAATTGTGATCATTTCTCTGAAAATGCAAACATTTTTTTCGA-AATCATGAACACTTTTTGAATCCACGAAA
CATTTTGTGATTTCTTTAAAATTTATAAAAATTTACTGATAAATTTGAAACTTTTTTGAAACTGCGAATTATTTTAAAGA
AGAAAAAATAGAAACAGAAAAGTATAAAAAGCAAAAAAAAAAAAGATATAAAAAACATTTGGTGTCCCGACCCCGCGACT
GGGCCGGCCCAAAAGGGCTGTCTTGCCGTTGATGTCCAAGGTTCCGCCTACGCAAGCAA----------TACATGTCCCG
ATTACAGAATCCCCTCCGACTCAGCCCCAACGCGCCAGCACCCAGC--AGCAGCAGCGGCGGCGGCGAGAAAGCAACCAG
AGCGTTCGCCATTGTTCCGCTCCCTCT--CTCCC----------------CGATAGTGCG------------------AG
GCAGAAGCGCAGCTGATGGCTTCGCCGTCCCTCCTGACCGTGCACCTGCGCGGGTCTGCTTCGCCGCCCGACGCCGCCTC
---GTCGGTGGCGATCGAGGTGGAGGGAGGCGACGGGGTGGACCTCGCCCAGGTGGGCCTCGCGCTGGGGCTGGATCCGG
CCACTGTCGGCCTCAACGGCTACTTCCTGAGCTGCGGGTCCGGCTACGTTTCCTTGGCGGTCACCTGGGGCGAGCTCCTC
GCCTTCTTCGCCACGGGCGGGCAGCCCACGGGTGCCGACCCCGCCGAGCCCGTCGCCGTCGACGGAGGGCCCGTACCTTC
GCCCCCA------GGTGCGCCTCCCTTTCC--------------------------------------------------
---------------------------------------------------------GGGAAGATTGCATGTTTGCATCG
TGACATTTAGCGTGCCACT-----------------------------------AGATGTCAGTAGCAACCTGTTGACTG
TTGTTCTCTGATTCTCTGAATTTTTTGCTCCTTTAAACTAGTAGCATAAATAA-----TTGTTCAGGGTCCAATTGTTCA
GTT-------TCATATGTTAGTACACATTATATAGTAGTACTA-----AGTACTAATCTATTTGAGCAAGTTGGATACTG
ATTATCACTAAATGCGTTGGGA----------------------------------------------------------
------------------------------TATTAAAGTGTCGCGGTAGCTAT---------------CAACTCAACTGT
ACTGTTCT--------------TGTTCATAGATTTGCAGCATTTTCATGTGG--------TTGTTGCGAAGCAATTATCT
CACATCAAGTGTTATTTCCTGATCATGTGATTCAGTACGTCATCTGTTTA-TGCTACAAGAATGCGTTTATGTCTACTGC
ACTTGAAGAAGTTAAACAAAATGTGATATTTTCCACGAAATTTTGATCTGAATCTGCAAATAATATCTCTGTTAGAGCCC
AGAGTTGTTCTGTCCTCAAAGCGAAAGCCCGGGTTGGAGACCGAAAATTGTTCCAAGAAGAGCAAGCTCCAACACAACAG
CTCCGCTCAGTCAAAAGCAGGCGAAGAGCTACTTGCCGATGAGATCACCTTTGGTTTGAAGAGAAGACTCACATTGGACG
AGGCTAGTCCATCTAAGAAGATTAAGCAAGTAGACT------------CCGGTGAGTGACAACTGA--CAACTGAACAAA
TCCTTCAAGAGTCTTCACCAGTTA--------CTGTATTTATA----TCACCAATAATCTACCAAATATTCTGAAATCTG
AAAGGTTCTTGTTTGGTT---TATTGCATTGGTTGGTTAATCAATGAAGTAGAAGCACAGCAGCCAGTTAAATACTCTTG
CAGCTTCGCCAGCAGTCACGACAA-GCGGCCATCGGATGAGGAGATGGTCATCTCACTGTCGCGCAAGGGAGTCTGGTG-
-ATGCCAGTGTGTTCTTGCAGATTGATATTTTAGTGTTACTCGAAAGAACTCACGGCCGTGTATATGGTGATGAACTGAC
ATGTCAAAGAGGCGCAGTGATGT-AGTGACTGAGATTTGATTGTCACCTTGTCGCAAGTCATTGTTACTCGAAACAACTC
CCGAG-TATGATGATAAACTGGCATCGCTAAGAGGCCTAGTGAGATTTAGTGATTCCCCATTACCATCATGTAGTTAGTT
TGGTCCTGAGTCATAGTTTCTGGTTTGTAGACACAGTGCTAGTTACAATAGTTTCACGTTTGGATACAGTGCTAGTTAGA
ACAGTTGTACAATGGAGTATTTCTTGTGTACATCGCAGTATTTGATATAATGCCAGAAAACTTCCCGATGTCTTTCTGTG
AGCATAAATAATGGGTGGGCTAAAATGGGTACATTTTGCCTGCAAAACGCTAGCGCTACTATCACTGTCAAATCTGTAAT
CAGCGCATTTGTTGCAAGACACTAACATCTACAGTATTATTTTTGGTTTTACCAAAACAGAAATATACTTTTTAATCACT
CCTGGGTTTTTACGATTTTTTTGGAGGAATAGCAACTGCTGTTTGGTTTGATTGCATCGTATGCACAACTATTCG-----
--------------------------------------------------------------------------------
------------------------------------------------------------------------------GT
ATTTCACAATGCATATGCATGCTGGAGATTCAAAAGAGAGAGAGAGAAGAAGCATTCAGTATTTCACCACACAGAGATGG
GTTACTTGATATGATTAATACCCATGTAAATCCCTGAAGAATTATAC--TTTTTTGGGATAATAATTACAAATTTTGGGG
TACATGATTGTATACACAAACGAGAGCAAAAGAC--ATGCATACCACCAACAAAAGTTAGGTCTAAGGTCTTCTAT----
--------------------------------------------------------------------------------
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--------------------------TTCGCAACCGGTTTCTCCACGCACTTGGCAGCACTCCAGGTTCAGCTCCGTTGC
AAAAAGAATGAATTTATGACATCATAAAAATTGATTTCAATCGATGACACTTTAGAGGGACGAACTGGA-----TACACT
GTAAAT
>chr3A_1
TTCATTTTCATTCCTTCTTCTTTTTTCATGTTCATTTTTA-TTTTCATTTATTATTTATTATTCATTATTAT-TTTTATT
TTTTGAACATCTTTTCAAATTTGTGAATATTT-CTAGAAAACATGAATTGGTTTTTAAATTATAAACATTTTTCGATTTT
GCAGAGA-TTTTTTCAAATTCTTGAACATTGTTTTAAAAATGTATGATCATTTTTCTTAAATCGCGTACATTAT-CAACG
CCGTGAATTTTTTTTTTAACTTTTTATGAAAGTAGCCCACATTTTTTTTGGAATAGACAACATTTT--------------
----TTGAAATTTGGTACCATGTTTTGAAATTCATCAACATTTTTTGAATACATATACATTTTTCTAAATCAGGAACATT
TTTTGAACCAGTGAACTTTTTTGTAATTCATGAACATTTTATAATTTTTGTAAAAATTTGCTAAACATTTATGAACATTT
TTTGAAGTAGCAAACATTTTTAGAATACATGATAA--TTTTTTATAAAATCATGAACATTTTTCGATTTCCCGAACATTG
TTTGTGCAAAATTGTGAACATTTTTCTGAAAATGCAAACAGTTTTTTTTCTAATCATGAGCAAGTTTTTAATCCACAAAG
CATGTTGTAATACCTTTAAAATTTATCAAAATTTATTGATATATTTGGATTTTTTTTGAAATGGCGAATTATTTTAAAGA
AGAAAAAAC----ACAGAAAAGCATAAAAAACAGAAAAAGATAT------AAAAACATTTGGTGTGGCGCCGCCGCGCCT
G----GGCCCAAAAGGACTGCCTTGCCGTTGATGTCCAAGGTTTGGCCCACGCAAACAACGAGAGTACGTACATGTCCCG
ATTAC-----CCCCTCCGACTCAGA-CCAACGCGCCAGCACC---C--AGCAGCAGCGGCGGCGGCGAGAAAGCAACCAG
AGCGTTCGCCATTGTTCCGCTCCCTCTCTCTCTC----------------CGATAGTGCG------------------AG
GCAGAAGCGCCGCTGATGGATTCGCCGTCACTCCTGACCATGCACCTGCGCGGGTCTGCTTCGCCGCCCGACGTCGCCAC
---GTCGGTGGCAATCGAGGTGGAGGGAGGCGACGGGGTGGACCTCGCCCAGGTGGGCCTCGCGCTGGGGCTGGACCCGG
CCACCGTCGGTCTCAATGGCTACTTCCTCAGCTGCGGCTCCGGCCACGTCTCTTTGGCGGTCACCTGGGGCGAGCTCCTC
GCCTTCTTCGCCGCGGGCGGGCAGCCCACGGGTGCCGACCCTGCCGCGCCCGTCGCCGTCGACGGCGGGCCCGTGCCTTC
GCCTCCA------GGTGCGCCTCCCTTTCT--------------------------------------------------
---------------------------------------------------------TGGAAGATTGCATGTATTATTTG
CGGCGATCGAAGC--------------------------TACATTGTGCGCGCGAGATGTCATTAGCAC-----------
CTGTTCTCTGATTCTCTGACTTTCTTGCTCCTTTAAACTAGTAGCATAAATAA-----TTGTTCAGGGTCCAGTTGTTCA
GTT-------TCATATGTTAGTACAAATTATATAGTAGTACTA-----AGTACTATCCTATTTGAGCAAGTTGGATACTG
ATTATCACTGAATGCATTGGGA----------------------------------------------------------
------------------------------TATTAAAGTGTCGCGGTAGCTAT---------------CAACTCGACTGT
ACTGTTCT--------------TGTTCATAGATTTGCATCATTTTCATGTGG--------TTGTTGCGAAGCAATTATCT
CACATCAAGTATTATTTCCTGATCATGTGATTCAGTACGTCATCTGTTTA-TGCTACAAGAATGCGTTTATGTCCACTGC
ACTTGAAGAAGTTAAACAAAAT---ATA-TTTCCACGAAATTTTGATCTGAATCTGCAAATAATATCTCTGTTAGAGCCC
AGAGTTGTTCTGTCCTCAAAGCGAAAGCCTGGGTTGGAGACCGAAAATTGTTCCAAGAAGAGTAAGCTCCAACACAACAG
CTCCGCTCAGTCAAAAGGAGGCGAAGAGCTACTTACCGATGAGATCACCCTTGGTTTGAAGAGAAGACTCACATTGGACG
AGGCTAGTCCATATAAGAAGATTAAACAAGTAGACTACAGCTCAGGCTCTGGTGAGTGACAACTGA--CAACTGACCAAA
TCTCTCAAGAGTCTTCACCAGTTA--------CTGTATTTATTATATTCACCAATAATCTAGCAAATATTCTGAAATATG
AAAGGTTCTTGTTTGGTT---TATTGCATTGGTTGGTTGATCAATGGAGTAGAAGCACAGCAGTCAGTTAAATACTCTTA
CAGCTTCGCCATCAGTCACGACAAAGCGGCCATCGAATGATGAGATGGTCATCTCACTGTCGCGCAAGGGAGTCTGGTG-
-ATGCCAGTCTATTCTTGCAGATTGATATTTTAGTGTTACTCAAAAGAACTCGCGGAC--GTATATGGTGATG-AGCAAC
ATGTCAAAGAGGCGCAGTGACGT-AGTGACTGAGATTTGATTATCACCTTGTCGCAAGTCATTGTTACTCGAAACAACTC
CAGAGTTATGATGATAAACTGGCATCGCTAAGAGGCCTAGTGAGATTTGGTGATTCCCCATTACCATCATGTAGTTAGTT
TGGTCCGGAGTCATAGTTTCTGGTTTGTATACACAGCGCTAGTCACAATAGTTTCAGGTTTGGATACAGTGCTAGTTAGA
ATAGTTGTACAATGGAGTATTTCTTTTGTACATCGCAGTATTTGATATAATGCCAGAGAACTTGCCGATGTCTTTCTGTG
AACAT-AATAATGGCTGGCCTAACATGTGTACATTTTGCCTGCAACACAATAGCGCTACTAGCACCGTCAAATCTGTAAT
CAGTGCATTTGTTGCAAGACACTAACAT----------------------------------------------------
---------------TTTTTTTCGAGGAATAGCAACTGCTGTTTGGTTTGATTGTACTGTATGCACAATTATTC------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AGT
ATTTCACAATGCATATGCATGCTGGAGATTCAAAAA--AGAGAGAGAAGAAGCATTCAGTATTTCGCCACACAGAGATAG
GTTACTTGATATGATTAATACCCATGTAAATCCCTGAAGAATTGTACTTTTTTTGGGGATAATAATTATAAATTTTGGGG
TACATGATTGTATACACAAACGAGAGCAAAAGAGATCTGCATACCACCAACAAAAGTTAGGTCTAAGGTCTTCTATATAT
TATTAGAGTATATTCCATTTTTTACCTCATCTTCTGAAATGTTGATTTGGATTACCTCGTTCAAGTTATTTTCATCCATT
CTACCAGTATTTTCATCCATTTTACCCCATTAACCCAACTTGTGCCGCATTTTATCTTTTATTTGTCTACATTCTGTCAT
GCTGGTGCGGCATCGCATGTTTTTATTTCGCAACCGGTTTCTCCACGCACTTGTCAGCACTCCAGGTTTGGCT-------
----AGAATGAATTTATGACATCGTAAAAATTGATTTCAATTGATGACAGTTTAAAGGAATGAACTGAA-----TATATT
GTAAAT
>chr3D_894
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------------------------------CGCGCCAGCACCAGCACTAGCAGCAGAGCC---------AAAGCAACCAG
AGCGTTCGCCATTGTTCCTC-CCCTCT--CGCCC----------------CGATCGTACCAGCTGTGTGCGAGCATCCAA
GAAGAATCGAAGCTGATGCCTGCGCCGCCGCTCCGGACCGTGCACCTGCGCCGGTCTCCCTCGCCGCCCGACGACGCGCC
AGAGTCGGCGGCCATCGCCGTCGACGGAGGCGGCGGGGTGGACCTCGCCCTGGTGGGCCGCGCGCTGGGGCTGGACCCCG
CCAGCGTCCGCCTCAACGGCTACTTCGTCAGCCGCGGCCCCGGCCACGTCTCCACGGCGGTCACCTGGGGCGCGCTCCTC
GCCTTCTTCGCCGCGCGCGGGCTCCCCACCGGCGCCGACCCCACCGCGCCCGTCGCCGTCCGCGGCAGGCCCGCGCCTTC
GCCCCCACGCCCAGGTGCGCCTCTCTTACAGTATAATACGCACTATTAAAAGGTTCTTGCGGCGCCGCCGTGTTCTTTGA
GGAAACCCCGACTTCTTGATTCATGGCGCTACTGGAGATAGAGAGCAACATGCTGGATGGAAGATTACATGTTTGCTTCG
TGACATTTTTTTAATCTGTCAAGTTTGCGGCTGTGGAAGTACATTGTGCGACCGAGAGTCCAGCCAGCAAC------CTG
TTGACCTCTGGTTCTCTGAAACTTGCTTCTTATAATCTGGAGTGTATGGCAGTCAATGTTGTTCAGGGTCCAATGCTTGA
TTGAGTTTCATCAAATACTAGTACACGATACGAAAGGTCCAAAGATATAGTAGCAACTTATTTGAGCAAGTTGTAAGCAT
ATTCAGATCAGGGGTATTAGAAATTCTACTCTTCATGAAAATTCATCCCTCGGTTTTATTAATTTGCAAGTTCATTGTCA
GCTAGTTAGAGCAAGAGCATTGAGATATTGTATTGAACTGCCCCGGTAATAATGCGTCTGTTATTTTCCAACTCCACTCT
ACTCCTCCTGATTTCGGTACTATGCTCATAGCCTCACAGCATTCTCATCTTCTCATCTACTTGTTGCAAAGCTGTGTTAG
T------------------------------------TGGTATGTGCATATTGCTAGATGAATGTTGTTATGCTGCACTC
AATAAAAAGCTTAATCCAGAGA--GATA-TTCCCATAAAATTTTGATCTGAATCTGCGCATGATATTCCTGTCAGATCCT
GGAGTTCTTCAGTCCTCCAAGCGTAAGTCTGGGTTGGAGACAGAAAATTGTTCCAAGAAGAGCAAGCTCCAACACAACAG
CTCAGCTCTTTCAAAATCTAGCGAGGAGCTACTTAGTGATGAGATCACCCTTGGTTTGAAGAGAAGACTCAGATTGGACG
ACATGACTCCATCTAAGAGGATCAAACAAGTAGACT--------------------------------------------
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>chr3B_909
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---------------------------------------------C--AGCAGCAGCGGCGGCGGCGAGAAAGCAACCAG
AGCGTTCGCCATTGTTCCGCTCCCCCTCTCTCCCT---------------------------------------------
---------CCGCCGATGGCTTCGCCGTCGCTCCTGACCGTGCACCTGCGCGGGTCTGCTTCGCCGCCCGACGCCGCCTC
---GTCGGTGGCGATCGAGGTGGAGGGAGGCGACGGGGTGGACCTCGCCCAGGTGGGCCTCGCGCTGGGGCTGGACCCGG
CCACTGTCGGCCTCAACGGCTACTTCCTAAGCTGCGGCTCCGGCTACGTTTCCTTGGCGGTCACCTGGGGCGAGCTCCTC
GCCTTCTTCGCCACGGGCCGGCAGCCCACGGGTGCCGACCCCGACGCGCCCGTCGCCGTTGACGGAGGGCCCGTACCTTC
TCCGCCA------GGTGCGCCTCCCTTTCC--------------------------------------------------
---------------------------------------------------------GGGAAGATTCCATGTTTGCATCG
TGACATTTAGCGTGCCACT-----------------------------------AGATGTCAGTAGCAACCTGTTGACTG
CTGTTCTCTGATTCTCTGAATTTTTTGCTCCTTTAAACTAGTAGCACAAAAAA-----GTGTTCAGGGTCCAATTGTTCA
GTT-------TCATATGTTAGGACAAAGTATATGTAG----------TAGTACTAACATATTTGAGCAAGTTGGATACTG
GGCGTCGGGATAT--------A----------------------------------------------------------
------------------------------TATTGAACTGTCCTGGTAGCGAT---------------CGACTCAACTGT
GCTGGCC---------------TGTTCATAGATTTGCAGCATTTTCATGTAG--------TTTTTGCGAAGCAATTATCT
CACATCAAGTGTTATTTCGTGATCATACAGTTCAGTACGTTATCTGTTTAGTGTTACAAGAATGCGTTTATGTCTACTGC
ACTTGAAGAAGTTAAACAAAATGTGATA-TTTCGACGAAATTTTGATCTGAATCTGCAAATAATATCTCTGCTAGAGCCC
AGAGTTGTTCTATCCTCAAAGCGAAAGCCTGGGATGGAGACCGAAAATTGTTCCAAGAAGAGCAGGCTCCAACACAACAG
CTCAGCTCAGTCAAAAGCAGACGAAGAACTACTTACCGATGAGATCACCCTTGGTTTGAAGAGAAGACTCACATTGGACG
AGGCTAGTCCATCTAAGAAGATTAAACAAGTAGACTACAGCTCAGGCTCCGGTGAGTGACAACTGA--CAACTGAACAAA
TCTCTCAAGAGTCTTCACCAGTTAGGCAGTTACTGTATTTGTA----TCACCAATAATCTAGCAAATATTCTGAAATCTG
AAAGGTTCTTGTTTGGTT---TATTGCATTGGTTGGTTAATCAATGGAGTAGAAGCACAGCAGCCAGTTACATACTCTTG
CAGCTTCGCCAGCAGTCACGACAA-GTGGCCAACGGATGAGGAGATGGTCATCTCAATGTCGCGCAAGGGAGTCTGGTG-
-ATGCCAGTCTATTCTTGCAGATTGATATTTTAGTGTTACTCGAAAGAACTCGTGGAC--GTATATGGTGATGAAGTAAC
ATGTCAAAGAGGCGCAGCGATGTTCGTGACTGAGATTTGATTATCGCCTTGTCGCAAGTCATTGTTACTCGAAACAACTC
CCGAGTTATGACGATAAACTGGCATCGCTAAGGGGCCTAGTGAGATTTAGTGATTCCCCATTACCATCATGTAGTTAGTT
TGGCCCGGAGTCATAGTTTCTGGTTTGCAGACACATTGCTAGTTACCATAGTTTCAGGTTTGGATACAGTGCTAGTTAGA
ACAGTTGTACAGTGCAGCATTTCTTGTGTACATCGTAGTATTCGATATAATGCCAAAAAACTTGCCGATGTCTTTCTGTG
AACAT-AATAATGGCTGGCCTAACATGGGTACATTTTGCCTGCAAAACGCTAGCGCTACTAGCACCGTCAAATCTGTAAT
CAGTGCATTTTTTGCAAGACACTAACATCTACAGTATTATTTTTGGTTTTACCAAAAAGGAAATATACTTTTTAATCACT
CTTGGGTTTCTACGATTTTTTTCGAGGAATAGCAACTGCTGTTTGGTTTGATTGCATCATATGCACAACTATTT------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AGT
ATTTCACAATGCATATGCATGCTGGAGATTCAAAAA---GAGAGAGAAGAAGCATTCAGTATTTCACCACACAGAGATGG
GTTACTTGATATGATTAATACCCATGTAAATCCCTGAAGAATTATAC--TTTTTTGGGATAATATTTATAAATTTTGGGG
TACATGACTGTATACACAAATGAGAGCAAAAGAGATATGCATACCACCAACAAAAGTTAGGTCTAAGGTCTTCTAT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TTCGCAACCGGTTTCTCCACACATTTGGCAGCACTCCAGGTTCGGCTCCATTGC
-AAAAGAATGAATTTATGACATCATAAAATTTGATTTCAATGGATGACACTTTAAAGGGATGAACTGAA-----TACACT
GTAAAT
>chr3B_909
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---------------------------------------------C--AGCAGCAGCGGCGGCGGCGAGAAAGCAACCAG
AGCGTTCGCCATTGTTCCGCTCCCTCTCTCTCCCTCTCCTATCGAACCAGCGATAGTGCG------------------AG
GCAGCAGCGCCGCCGATGGCTTCGCCGTCGCTCCTGACCGTGCACCTGCGCGGGTCTGCTTCGCCGCCCGACGCCGCCTC
---GTCGGTTGCGATCGAGGTGGAGGGAGGCGACGGGGTGGACCTCGCCCAGGTGGGCCTCGCGCTGGGGCTGGACCCGG
ACACTGTCGGCCTCAACGGCTACTTCCTAAGCTGCGGCTCCGGCTACGTTTCCTTGGCGGTCACCTGGGGCGAGCTCCTC
GCCTTCTTCGCCACGGGCGGGCAGCCCACGGGTGCCGACCCCGACGCGCCCGTCGCCGTTGACGGACGGCCCGTACCTTC
TCCGCCA------GGTGCGCCTCCCTTTCC--------------------------------------------------
---------------------------------------------------------GGT--------------------
---------------CACT-----------------------------------AGATGTCAGTAGCAA--TGTTGACTG
CTGTTCTCTGATTCTCTGAATTTTTTGCTCCTTTAAACTAGTAGCACAAATAA-----GTGTTCAGGGTCCAATTGTTCA
GTT-------TCATATGTTAGGACAAAGTATATGTAG----------TAGTACTAACATATTTGAGCAAGTTGGATACTG
GGCGTCGGGATAT--------A----------------------------------------------------------
------------------------------TATTGAACTGTCCTGGTAGCGAT---------------CGACTCAACTGT
GCTGGCC---------------TGTTCATAGATTTGCAGCATTTTCATGTAG--------TTTCTGCGAAGCAATTATCT
CACATCAAGTGTTATTTCCTGATCATACGGTTCAGTATGTTATCTGTTTAGTGCTGCAAGAATGCTTTTATGTCTACTGC
ACTTGAAGAAGTTAAACAAAATGTGATAC-TTCGACGAAATTTTGATCTGAATCTGCAAATAATATCTCTGTTAGAGCCC
AGAGTTGTTCTGTCCTCAAAGCGAAAGCCTGAGTTGGAGACCGAAAATTGTTCCAAGAAAAGCAAGCTCCAACACAGCAG
CTCAACTCAGTCACAAGCAGACGAAGAACTACTTCCTGATGATATCACCCTTGGTTTGAAGAGAAGACTCACATTGGACG
AGGCTAGTCCATCTAAGAAGATTAAACATGTAGACT------------CCGGTGAGTGACAACTGATCCATCTGAAAAAA
TCTCTCAAGAGTCTTCACCAGTTAGGCAGTTACTGTATTTGTA----TCACCAATAATCTAGCAAATATTCTGAAATCTG
AAAGGTTCTTGTTTGGTT---TATTGCATTGGTTGGTTAATCAATGGAGTAGAAGCACAGCAGCCAGTTACATACTCTTG
CAGCTTCGCCAGCAGTCACGACAA-GCGGCCAACGGATGAGGAGATGGTCATCTCAATGTCGCGCAAGGGAGTCTGGTG-
-ATGCCAGTCTATTCTTGCAAATTGATATTTTAGTGTTACTCGAAAGAACTCGTGGAC--GTATATGGTGATGAAGTAAC
ATGTCAAAGAGGCGCAGTGACGTTAGTGACTGAGATTTGATTATCGCCTTGTCGCAAGTCATTGTTACTCGAAACAACTC
CCGAGTTATGATGATAAACTGGCATCGCTAAGAGGCCTAGTGAGATTGAGTGATTCCCCATTACCATCATGTAGTTAGTT
TGGTCCGGAGTCATAGTTTCTGGTTTGCAGACACATTGCTAATTACAATAGTTTCAGGTTTCGATACAGTGCTAGTTAGA
ACAGTTGTACAATGGAGTATTTCTTGTGTACATCGTAGTATTCGATATAATGCCAGAAAACTTGCCGATGTCTTTGTGTG
AACAT-AATAATGGCTGGCCTAACATGGGTACATTTTGCCTGCAAAACGCTAGCGCTACTAGCACCGTCAAATCTGTAAT
CAGTGCATTTTTTGCAAGACACTAACATCTACAGTATTATTTTTAGTTTT------------------------------
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>chr3A_1771
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---------------------------------------ATTTTGATCTGAATCTGTGCATGATATTCCTGTCAGATCCT
GGAGTTCTTCAGTCCTCGAAGCGGAAGTCTGGGTTGGAGACAGAAAATTGTTCCAAGAAGAGCAAGCTCCAACACAGCAG
CTCAGCTCTTTCAAAATCTAGTGAGGAGCTACTTAGTGATGAGATCACCCTTGGTTTGAAGAGAAGACTCAGGTTGGACG
ACATGACTCCATCTAAGAGGATCAAACAAGTAGACTACAACTCAGG------TGAGTTATAACAGC--CGAAGTTCAGTC
TCTTAACTTAATCATTC--------------------------ATATTCGTAAATCAAATACATCATATCCGGAAATCTG
AACTCTTCCTTATTTGGTTGTTCTTGCATTGGATAATCAACCAATTGAGCAGAAACACAGCAGCCAGTCAAATTCTCCTG
CAGCTTCATCAACGGGCATGGAAAGCGAGCACGA-GATGAGGAGATGGTCACCTCACTCCCATGCAAGAGAGTCCGATGA
TATGCCAAATCTGTCCTGCAGACTGAGACTTTTGTGT-------------------------------------------
--------------------------------------------------------------------------------
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------
>chr3B_2791
AAAAAATAT-----------------------------------------------------------------------
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--------------------------------------------------------------ATATACTTTTTAATCACT
CTTGGATTTCTATGATTTTTTTTGAGAAATAGCAACTGCTGTTTGGTTTGATTGCATTATATACACAACTATTCAGTACT
CCCTCCGTTCCTAAATATTTGTCTTTCTAGAGATTTCAAATGGACTACCACATACGGATGTATATAGACATATTTGAGAG
TGTAGATTCACCCATTTTGCTCCGTATGTAGTCACTTGTTGAAATATCTAAAAAGACAAATATTTAGAAACGGAGGGAGT
ATTTCACAATGCATGTGCATGCTGGAGATTCAAAAG---GAGAGAGAAGAAGCATTCCGTATTTCACCACACAGAGATGG
GTTACTTGATATGATTAATACCCATGTAAATCCCTGAAGAATTATAC--TTTTTTGGGATAATATTTATAAATTTTGGGC
TACATGACTGTATACACAAACGAGAGCAAAAGAGATATGCATACCACCAACAAAAGTTAGGTCTAAGGTCTTCTAT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TTCGCAACCGGTTTCTCCACGCATTTGGCAGCACTCCAGGTTCGGCTCCGTTGC
-AAAAGAATGAATTTATGACATCATAAAAATTGATTCCAATAGATGACACTTTAAAGGGATGAACTGAAATGAATACACT
GTAAAT
>SNPs
---------S-----------------------------SS---------------S---S-SSS-SS--SSS-------
--SS----------------------S-----S---------S-----S-------------------------S-S---
-S---SSS----------------------------------S-----S---------------S-------SSS---SS
-------SS---------------SS------S---------------------------------SSSSSSSSSSSSSS
SSSS-------------S------------------S----------------------S----S------S--------
--------SS-----S---------------S--------S-S--------S-------S-----SSS----------S-
------S-SS-S--------S------SSSS-S--SS-----SSS-----S--------------S--S--SS-SS----
---S-------------S-----S----------------S------SSS---------S--SS----S-------S--S
---S----S--SS-------------S--------S-----S-----S-SS----------SS-----------------
--------SSSSS---------S-------S--S-----S-S-SSSSSSS---------------SS--S-S-----S--
-SSSS-----------S---S----------------------SS---S------S------------------------
-----SSSSS--------------SS----------------SSS-----------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
---------------------------------------------------------------------------S----
----------------------------S--------S------------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
-----------------------------S--------------------------------------------------
----------------------------------S--------------S------------------------------
-------------------------S------------------------------------------------------
--S-----------------------------------------------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
---------S-S----------------------------------------S---S-SS---------------S-S--
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
------S-------------------------------------------------S-----------------------
---------------------------------------------------------------S----------------
-S---S--------S---S----S-------------------------------------S---S--------------
---S-----------------------------------------------------SS---------------------
-S-------S------------S---------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------SS------------------------------------------
--------------------------------------------------------------------S-----------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
S----------------------------------------S------------S-----S------S------------
------
>forward_844
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------GCCGTTGATGTCCAAGGTTC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>reverse_2527
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------AAGTAGAAGCACAGCAGCCA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>forward_905
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AGAATCCCCTCCGACTCAGC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>reverse_2716
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CTGAC
ATGTCAAAGAGGCGC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
