>input_sequence_56007
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--------------------------------------------------------------------ATGGCGACGATG
TCCCTCGCCGCGGCCTCACCCCTCACCGCCTCCACCCCCCGCGGCCTCGCCGTGCCCGCGCCCCGCGCGCC---ATTCCT
CGGCCTCCGCGCATTTGGCGCGTCGGCCACGCGGTTCGCGGGGCTGGCGGCGGCGCCGCGGCCGTCGGGGAGGGGCGATG
CGGCGGTGGTGAGGATGGCGAAGAGGGAGCAGGAGCTGGAGGAGATTCGGGCCATGGAGACGGAGAGTCTGGAGCAGGAG
GTGGTGGACCTCAAGGGGGAGCTCTTCCTGCTCCGCCTCAAGCGCTCCGCGCGCCAGGAGTTCAAGTCCAGCGAGTTCGG
CCGCATGCGCAAGCGGGTACATTGCTCCTGCTCCCTTCCTCGGTTGCTGCTCTGAGCATTGGTCGTGTAGCCTTTATCTC
TGCGCGATATTGCTGTCTCGTTTGGGAACACAGCATATGATTGGTGGAAATGTTGTGTGACCAAGAACACGACGGCTCCC
TTGCCATTTGGGCTCCTGGAG-------TTGCAGTCATATGGTCTGCTCGCTCGATATGTTAAGCTTGCAGACTTTTTCG
TTGAACTCTGCTCTAAGCTAAAATGCTCATGATTTTGAGATGATTGTCTGCTGACTTGGACCAGTTACTGATACTTCTAC
TTAAGATGGTAGAGCAGTCACTTGCAGATTTGCTAGTTGGATGTTTGCCTGATAGTTTAAAGCTTAATGGTTCTTATTTG
CATTATATTTC----------GCCGGATAATGCTGAACTTAGTCATTTAGGGAT-GTTTGTGCTTATGCTGCTGGGACAA
CTGTAGTCTCATAT-CATCC-------CAACAGTAGTCCTTGACCTTTGCAGCTTTCATGATACAATGCTCGTCTTTGGG
TCTTGTGATATGCTAATTAAGAATTATACTCATCGCCTGCTTGAAGGTTGAAACCTTCATCTCAGCACGGGGTGAACCTT
AGAACAAACAGTTAGCAGCGA-ATAATTCATATTTTAGAACCTCAGACGACTCCTGTATTAATAGATCCATGACATTTGG
AAATGAATCTATCAAGTTAATCTAGTATA-TTTCAGATGCCTTAGTAGCAGCATGTCTCAAAATTGTTTTTGACTTACGT
TTTCATCTTTTCATCAGGTTGCTCGTCTGCTGACTGTGAGAAGAGAAAGGGAAATTGAACAAGGAATCAACAAAAGAAAT
TCTAGGAAGCTTGACAGGAAATGGAAACTGGGTATTGTGGTTGGACCACCACCATCTCTAAGGGAGAAGAAGGAGGAGGA
CTAG----------------------------------------------------------------------------
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---------------------------------------------------
>chr6A_1_TraesCS6A01G319100
TAGTCTAGTAAATTACAAAAGAGTTGTCACCATTGACTTTTCCACCTCACATGGGTTGTCAATGTAGATAAAGACACTAC
AAACTGTTTGTCACGGCTACGTGTATTAATCATGAAAAAACAGTTAGACATCTCCTCAAGGGGCCAGATGTGGGAATATT
TTTTTCGAGGGGCCATGGATGTACTCCCCACATCCGGTAATATAGAATATTTAATAAAAAAAACTACCACATTTGGGGTT
TGTGTCTAACTGAATTACCACTTCTTAATAGTGACAAAAGGCTACCACATTTACTTAATTTTGTTTGCAAAAATCTACCA
AATGCATTTGATAACCGACGATTTAAACACGTCTATGACAGGCGGGACCCGCCCATCAGGGTTGATGTGGCGGAAAAGTC
AATTCTGCTTATTTTGATTGTTAAGCTGACCATTATGATAGAGAAAGAGGAGGAGGAAGGAGGTTGATGATGACGCGTGG
GCCCCACTTGTCATAACGGTCAACTTAACAGTCAAAATAACCGGAGTAAATTTTCCCACCACGTTAGCCCTGATGAGTGG
GTCATGGTTGTCATACACACGTTTAAATTGTATAAATAGGTCAAATGCATTTGGTAGTTTTTTTGCCAAAAAATTAAGTA
ATTGTGGTAGTCTTTTGTTAGTGTTAAGAAAGTGGTAGTTAAGTAAGACACAAACCCTAAATTTGGTATTTTTTCTGCTA
AACACTCAATGACATAAGATGTTATTACAACTAATTTACTCACATATTGGTTGTCAGACCATCTTATAAACGGAGGGAAT
ACTTAAGTTTGAAACGGGCCAT---------------------------TTTAGTGGAAAAGATGCCTTCGATTTAGGGT
ACGTCGTTGGAGACGCTCTCAGCCGTGCGATCACACGTGTAGATTCGTACTACACCGAAGGCCACCTAGACAATCAGATA
AACCCCATCATCATCCCCTTATCCTCGAGCCCGAACAGC-AAACGCGAGCAGAGAGCGCAACACGAAGATGGCGACGATG
TCCCTCGCCGCGGCCTCACCCCTCACCGCCTCCACCCCCCGCGGCCTCGCCGTGCCCGCGCCCCGCGCGCC---ATTCCT
CGGCCTCCGCGCATTTGGCGCGTCGGCCACGCGGTTCGCGGGGCTGGCGGCGGCGCCGCGGCCGTCGGGGAGGGGCGATG
CGGCGGTGGTGAGGATGGCGAAGAGGGAGCAGGAGCTGGAGGAGATTCGGGCCATGGAGACGGAGAGTCTGGAGCAGGAG
GTGGTGGACCTCAAGGGGGAGCTCTTCCTGCTCCGCCTCAAGCGCTCCGCGCGCCAGGAGTTCAAGTCCAGCGAGTTCGG
CCGCATGCGCAAGCGGGTACATTGCTCCTGCTCCCTTCCTCGGTTGCTGCTCTGAGCATTGGTCGTGTAGCCTTTATCTC
TGCGCGATATTGCTGTCTCGTTTGGGAACACAGCATATGATTGGTGGAAATGTTGTGTGACCAAGAACACGACGGCTCCC
TTGCCATTTGGGCTCCTGGAG-------TTGCAGTCATATGGTCTGCTCGCTCGATATGTTAAGCTTGCAGACTTTTTCG
TTGAACTCTGCTCTAAGCTAAAATGCTCATGATTTTGAGATGATTGTCTGCTGACTTGGACCAGTTACTGATACTTCTAC
TTAAGATGGTAGAGCAGTCACTTGCAGATTTGCTAGTTGGATGTTTGCCTGATAGTTTAAAGCTTAATGGTTCTTATTTG
CATTATATTTC----------GCCGGATAATGCTGAACTTAGTCATTTAGGGAT-GTTTGTGCTTATGCTGCTGGGACAA
CTGTAGTCTCATAT-CATCC-------CAACAGTAGTCCTTGACCTTTGCAGCTTTCATGATACAATGCTCGTCTTTGGG
TCTTGTGATATGCTAATTAAGAATTATACTCATCGCCTGCTTGAAGGTTGAAACCTTCATCTCAGCACGGGGTGAACCTT
AGAACAAACAGTTAGCAGCGA-ATAATTCATATTTTAGAACCTCAGACGACTCCTGTATTAATAGATCCATGACATTTGG
AAATGAATCTATCAAGTTAATCTAGTATA-TTTCAGATGCCTTAGTAGCAGCATGTCTCAAAATTGTTTTTGACTTACGT
TTTCATCTTTTCATCAGGTTGCTCGTCTGCTGACTGTGAGAAGAGAAAGGGAAATTGAACAAGGAATCAACAAAAGAAAT
TCTAGGAAGCTTGACAGGAAATGGAAACTGGGTATTGTGGTTGGACCACCACCATCTCTAAGGGAGAAGAAGGAGGAGGA
CTAGAAAACAGCAAAAACAGGCAATTTGCACAAGTCATTTCACCCCTTATAATGGTTTGTTTTGTAATCCAGAGTACAGC
TTTCAAGTCCTTGCTGTTAAAACCAGAACTTACGTTACCATTTTTGCGTGTAAATCTCAGTTTTATTTGAAATTTCTGCT
ACTTCTTTCTGTGTTAATTGTTTATGTTCTTATATAATTGACATATGAAA--CTACGTGTAAGGAGTTTATGCTATTCAG
TTGTCAAGACTAAGTAGCACTCCGTACCTGGCTTACATGATTTATCATTATGCTCAACCGGATCAAAGTATGTCACTTGA
TGACATTTCAACCTTGATTCTGTAGGACAATCTCGTGTTACCATTTAGTTTTCTGCGCCATAACAACGAAAACACATGGC
CTCTCCTCTAGTTTTTTT---TGTGATTATGCTCAACTGTGTGTTGCCTATTCTTTTGAATCTTTGCCATGTCATGAAAA
TATTCAG--TCTTACAAATGATTTGTCTTCTCAAAGTTAAGAAAAGGAAATAATATTATGTCTGCCTACTTAACCCACCA
ATTAAGAAAAAACAAAAAGGGTATACTGTGCTCAATGAGAAGCTTCGATAATTTTAAGCAGGTAACTGACTTGTTGTTCA
TTCAGCCAGCTTAACTGTCCAAACTGCTCATTCTACTCACTTAACATTGCTTTGTGTGGGCATATACCCTTAATGATTTA
AAAACTACCCGGACCACCTTTTGACACAGTGACCACATCAGCCACTGTCAAGATTGCTCACTTTATTGGACCCTGATGCT
AAAAAGAACTGATTTACCTAAACAAAGAAGATAAACTAATGTAAAGAAACATATTGTTCTACTCATATCTATAATAATAA
CTTTGTGAATTATGGTGCTTTATTTTGCTCAGTTTACTATTTATCAAATATTTGGAAACTTCTGTGAAAATCTCTAATTC
CTCTTCTTGTGTAGGACACTCAGATTGTTGTTAGTGCTGATTTACAGCTTC
>chr6B_778
ACCATT--------------------------------------------------------------------------
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---------------------------------------------------------------TTATAAACGGAGGGAGT
ACTTAAGTTTGAAACGGGCCAGGTTAAAAGAAAAGTTTGAAACGGGCCATTTAGTGGAAAAGATGCATTCGAGTACGCCG
T-----------------------------TCACACGTGAAGATTCGTGCAACACCGAAGGCCACCTAGACAATCAGATA
AACCCCATCAT---CCCCTTATCCTCGAGCCCAAGCAGCAAAACGCGAGCAGAGAGCGCAACACGAAGATGGCGACGATG
TCCCTCGCCGCGGCCTCACCCCTCACCGCCTCCACTCCCCGCGGCCTCGCCGTGTCCGCGCCCCGAGCGCC---ATTCCT
CGGCCTCCGCTCATTTGGCGCGCCGGCGACGCGGTTCGCGGGACTGGCGGCGGCGCCGCGACCGTCGGGGAGGGGCGATG
CGGCGGTGGTGAGGATGGCGAAGAGGGAGCAGGAGCTGGAGGAGATACGGGCCATGGAGACGGAGAATCTGGAGCAGGAG
GTGGTGGACCTGAAGGGGGAGCTCTTCCTGCTCCGCCTCAAGCGCTCCGCGCGCCAGGAGTTCAAGTCCAGCGAGTTCGG
CCGCATGCGCAAGAGGGTACATTACTCCTGCTCCCTTCCTCGGTTACTGCTCTGAGCATTGGTCATGTAGCCTTTATCTC
TGCGCGATATAGCTGTCTCGTTTGGGAACACAGCATCTTATTGGTGGAAATGTTGTG--ACCAAGAACATGA-GGCTCTC
TTGCCATTTGGGCTCCTGGAGGCTGGAGCTGTAGTCATATGGTCTGCTCGCTCGATATGTTCAGCTTACAGACTTTTTCA
CTGAATTCTGCTCTAAGCTAAAATGCTCATGATTCTGAAATGACCGGCTGATGAC-TGGACCAGTTACTGATACTACTAC
ATAAGAGGGTAGACCGGTAACTTGCAAATTTGCTAGTTGGATGTTTGCTTGATAGT-TAAAGCCTAATTGTTCTGATTTG
CATTGTATTTTATGGAATGTTGCCGGATAGTGCTGAACTTAGTCATTTGGGGATGGTTTGTGCTCATGCTGCTGGGACAA
CTGCAGTCTCGAAAGCATCCTAACAGGCAACAGTAGTCCTTGACATTTGCAGGTTTCATGATACAATATTCGTCTTTGAC
ACTTGCGATATGCTAATTAATAATTATACTCATCACCTGCTTGAAGGTTGGAACCTTCATCTCAGCACGGGGTGAACCTT
AGAACAAACAGTTAGCAGCGAAATAATTCATATTTTAGAACCTCAGATGACTCCTGTATTAATAGATCTATGGCATTTGG
AAATGAATCTATCAAGTTAATGCAGTGTTCTTTCAGATGCCTCAATAGCAGCATGTCTCAAAATTGTCTTTGACTTACGT
TTTCATCTTTACATCAGGTTGCTCGTCTGCTGACTGTGAGAAGAGAAAGGGAAATTGAACAAGGAATCAACAAAAGAAAT
TCTAGGAAGCTTGACAGGAAATGGAAACTGGGTATTGTGGTTGGACCACCACCATCTCTAAGAGAGAAGGAGGAGGAGGA
CTAGAAAACAGCAAAAACAGGCAATTTGCACAAGTCATTTCACCCCTTATAATGGTTTGTTTTGTAATCCAGAGTACAGC
TTTCAAGTCCTTGCTGTTAAAACCAGAACTCATGTTACCATTTTTGTGTGTAAATCTCAGTTTTATTTGAAATTTCTGCT
ACTTCTTTCTGTGTTAACTGTTTATGTTATTGTATAATTGACATATGAAACTCTACGTGTAAGGAGTTTATGCTATTC-G
TCGTCAAGACTAAGTAGCACTCCGTACCTGGCTTACATGATTTCTCATTATGCTCAACCGGATCAAAGTATGTCATTTGA
TGACATTTCAACCTTAATTCTGTAGGACAATTTCATGTTACCATTTAGTTTTCTGCGCCA--ACAACAAAAACACATGAC
CTCCCCTCTAG-TTTTTT---TGTGATTATGCTCAACTGTGCGTTGCCCATTCTTTTGAATCTTTGCCATATCATGAAAA
TATTCACACTCTTAAAAATGATTTGTCTTCTCAAAGTTAAG----------AATATTATGTCTGCCTACTTAACCCACCA
ATTAAAAAAAA--------GGTATACTGTGCTCAATGAGAAGCTTCAATAATTTTAAGCAGGTAACTGACTTGTTGTTCA
TTCAGCCAGCTTAACTGTCCAAACTGCTCATTCTACTCACTTAACATTGCTTTGTGTGGGTATATACCCTTAATGATTTA
AAAACTACCCGGACCACCTTTTGACATGGTGACCACATCAGCCACTGTCAAGATTGCTCACTTTATTGGACCCTGATGCT
AAAAAGAACTGATTTACCTAAACAAAGAAGATAAACTAATGTAAAGAAACATGTTGTTCTACTCATATCTGTAATAATAG
CTTTGTGAATTATGGTGCTTTGTTTTGCTCAATTTACTATTTATTAAATATTTGGAAACTTCTGTGAAAATCTCTAATTC
CTTTTCTTGTGTAGGACACTCAGATTCTTGTTAGTGCTGATTTACAGTTTC
>chr6D_877
CGT-----------------------------------------------------------------------------
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------------------------------------------------------------------------------CG
T-----------------------------TCACACGTGAAGATTCGTACAACACCGAAGGCCACCTAGACAATCAGATA
AACCCCATCAT---CCCCTTATCCTCGAGCCCAAACAGC-AAACGCGAGCAGAGAGCGCAACACGAAGATGGCGACGATG
TCCCTCGCCGCGGCCTCACCCCTCACCGCCTCCACTCCCCGGGGCCTCGCCGTGCCCGCGCCCCGCGCGCCGCCATTCCT
CGTCCCCCGCGCATTTGGCGCGCCGGCGACGCGGTTCGCGGGACTGGCGGCGGCGCCGCGGCCGTCGGGGAGGGGTGACG
CGGCGGTGGTGAGGATGGCGAAGAGGGAGCAGGAGCTGGAGGAGATTCGGGCCATGGAGACGGAGAATCTGGAGCAGGAG
GTGGTGGACCTCAAGGGGGAGCTCTTCCTGCTGCGCCTCAAGCGCTCCGCGCGCCAGGAGTTCAAGTCCAGCGAGTTCGG
CCGCATGCGCAAGAGGGTACATTACTCCTGCTCCCTTCCTCGGTTACTGCTCCGAGCATTGGTCGTGTAGCCTTTATCTC
TGCGCTATATTGCTGTCTCGCTTGGGAAC-CAGCATCCTATTGGTGGAAATGTTGTG--ACCAAAAACATGA-GGCTCTC
TTGCCATTTGGGCTCCTGGAGGCTGGAGTTGTAGTCATATGGTCTGCTCGCTCGATATGTTCAGCTTACAGACTTTTTCA
CCGAATTCTGCTCTAAGCTAAAATACCCATGATTTTGAAATGATTGTCTGCTGACTTGGACCAGTTACTGATACTTCTAC
TTAAGATGGTAGAGCAGTCACTTGCAAAATTGCTAGTTGGATGTTTGCCTGATTGTATA---------------------
---------TTATGGAATGTTGCCGGATAGTGCTGAACTCAGTCATTTAGGGATGGTTTGTGCTTATGCTGCTGGGACAA
CTTCAGTCTCAGAAGCATCC-------CAACAGTAGTCCTTAACATTTGCAGGTTTCATGATGCAATGTTCATCTTTGAC
ACTTGCGATATGCTAATTAATAATTATACTCATCACCTGCTTGAAGGTTGGAACCTTCATCTCAGCACGGGGTGAACCTT
AGAACAAACAGTTAGCAGCGAAATAATTCATATTTTAGAACCTCAGATGACTCCTGTATTAATAGATCTATGACATTTTG
AAATGAATCTATCAAGTTAATGTAGTATTCTTTCAGATGCCTCAGTAGCAGTATGTCTCAAAATTGTTTTTGACTTACGT
TTTCATCTTTACATCAGGTTGCTCGTCTGCTGACTGTGAGAAGAGAAAGGGAAATTGAACAAGGAATCAACAAAAGGAAT
TCTAGGAAGCTTGACAGGAAATGGAAACTGGGTATTGTGGTTGGACCACCACCATCTCTAAGGGAGAAGAAGGAGGAGGA
GTAGAAAACAGCAAAAACAGGCAATTTGCACAAGTCATTTCACCCCTTATAATGGTTTGTTTTGTAATCCAGAGTACAGC
TTTCAAGTCCTTGCTGTTAAAACCAGAACTTATGTTACCATTTTTGCGTGTAAATCTCAGTTTTATTTGAAATTTCTGCT
ACTTCTTTCTGTGTTAACTGTTTATATTCTTATATAATTGACATATGAAA--CTACGTGTAAGGAGTTTATGCTATTCAG
TCGTCAAGACTAAGTAGCACTCCGTACCTGGCTTACATGATTTATCATTATGCTCAACCGGATCAAAGTATGTCATTTGA
TGACATTTCAACCTTGATTCTGTAGGACAATTTCGTGTTACCATTTAGTTTTCTGCGCCATAACAACGAAAACACATGGC
CTCCCCTCTAG-TTTTTTTTGTGTGATTATGCTCAACTGTGCGTTGCCTATTCTTTTGAATCTTTGCCATGTCATGAAAA
TATTCAG--TCTTACAAATGATTTGTCTTCTCAAAGTTAAGAAAAGGAAATAATATTATGTCTGCCTACTTAACCCACCA
ATTAAGAAAAAACAAAAAGGGTATACTGTGCTCAATGAGAAGCTTCAATAATTTTAAGCAGGTAACTGACTTGTTGTTCA
TTCAGCCAGCTTAACTGTCCAAACTGGTCATTCTACTCACTTAACATTGCTTTGTGTGGGCATATACCCTTAATGATTTA
AAAACTACCCGGACCACCTTTTGACA--GTGACCACATCAGCCACTGTCAAGATTGCTCACTTTATTGGACCGTGATGCT
AAAAAGAACTGATTTACCTAAACAAAGAAGATAAACTAATGTAAAGAAACATATTGTTCTACTCATATCTATGATAATAG
CTTTGTGAATTATGGTGCTTTGTTTTGCTCAGTTTACTATTTATCAAATATTTGAAAACTTCTGTGAAAATCTCTAATTC
CTCTTCTTGTGTAGGACACTCAGATTGTTGTTAGTGCTGATTTACAGCTTC
>SNPs
SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-
---------------------S--------------------------------------------S-----S-SS-SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S----------S-----------------------------
-----------SSS------------------S-----------------------------------------------
-----------------------------------S--------------------------------------------
----------------------S----S--------------S-------------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
-------------S---------S---------------------S----------------------------------
------------------------------------S-S------------------SS----------S--S-----S-
-------------------------------S-----------------------------S-----S-----------S
S----S--------------------------------S-----------------------------------------
--------------------------S-----------------------------S------S----S-----S-----
----S-----S------------------S--------------------------------------------------
---S-------S-S------------------------------S-------S---------------S---------SS
S----S--------------S-------------S---------------S-----------------------------
-----------------------------------------------S--------------------S-----------
---------------------S------S-------------S-------------------------------------
----------S---------------------------------------------------------------------
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--------------------------------S-----------------------------------------------
-----------------S--------------------------------------------------------------
-S-------------------------------------------------------------------------S----
-------------------------------S------------------------------------------------
---S-------S-----------------------------S--------------------------------------
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----------------------------------------------S---------------------------------
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--------------------------SS----------------------------------------------------
-------------------------------------------------------------------------------S
---------------------S----------------------------------------------------------
---------------------------------------------------
>forward_149
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-------------------------------------------------ATCTCCTCAAGGGGCCAGAT-----------
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>reverse_2171
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----------TCATCAGGTTGCTCGTCTGC--------------------------------------------------
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>forward_1971
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-------------------------------ATCGCCTGCTTGAAGGTTGA-----------------------------
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---------------------------------------------------
>reverse_3067
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--------------------------CAGTGACCACATCAGCCACT----------------------------------
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---------------------------------------------------
