>input_sequence_55985
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-ATGCAGTTTCAGCGCAAGAATTCAATGGGGAAGAAAAAAAAGCATGCTAAAACGT-GGCCCATTGAGAAGCCGCAGCAC
CTTTATCTTGTCCTGGATGACTGGTCATGGGGATATAGTATTCGAAAGATCGACTTGACATTTGGCGACGAGCGGAGGGG
TGCCATCTACACCAGCGAGGATAGACTACCATCTGCCATGTTTTGCTTGCAGGGACGTCGTGGCGAGCCCAAAGCCATCA
TGGGTGCTTTTGACAACATGATTTTGGCTATGCCACCCTTGGACCACATACACGGGATGAACAATTTGGGTCTACATTGT
GGTGCCGTAATTGACATTCATGCACGGACCTTCATTAATGGACCATGGCAGGACACGTCGCTGGATGTGGTCAACCCAAT
CTACATTCCTGTTGGTGGCAGGCTCTTTTTCCTTGGTGATAGCTCCTCCTGGATGCTCTACCAGGCATGTGATGATGCCT
ACTTCTATAACTTCGTGTGGGCGTGGTCGGAGCTCCCCAAGCCAATCTTTCAGTGTGAACTTGTCACCTCCTATGCCGTG
CACCCAGATGAGCGGACCATCTTCGTTAGCGGGTCGTTTGACGCCCC-----TACCACCTTCAGCATCAACACAACCGAT
CCCGCCACCATCGGCTTGGAGGAGCCTGTGAACCCTCAGTGGAAGCAACATGGTATGTGGCAGCTGCCCTTCACTGGACG
TGGTTATTTCGATCCTGAGTTGGACGCCTGGGTTGGGCTTTCCGCACAGCTGGACACCATTGGCCACATCTGCTCATGTG
ATGTGGTGTCTACCAACTCCGACACAAGCCATCAGCAGTGCCCAGCCCTGAAGGTCGGCAAAGAGAACTTATTTGGCGAG
TTCCTAGACGAGAGGCACATAGGTGCCACCCTAGTCTATACGGGTGGTGAGAGCAAATTCTGCCTCCTGGAGGTCATCTG
CATGCAAGCTGACTTAGCTAACCAGCCAACTGAATCTGATGAGAAGAATGAGGACTTCGACGCTGGGTTGAATGACACTT
ATTCCGATGAGACGACTGTCGGTGAGGTGA------CTGATGAGATGAATGAGTACTCTACTAATGAGGTGAATGAGGAG
CAAGATCAGAAACGTTTTTTGCGGTTGACGACCTTTTCACTTAGGTATGACAGGAATGGAGACCTGACAACTGGCAATAG
CCGGCGGGTTCGGTACTATAGTTTGCCTCAAGGAGTTACTAATTCGATGCTTGAGTATCCCGTGGCATTCTGGATGTAA-
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-------------------------------------------
>chr6B_1_TraesCS6B01G163600
GCCAGCCATCTACCGCCAACCGGGGGCCTCCCACCGCGCATCTAGCGCCACCACCCTCGCCGGGAGTCGCCGGGATCTGC
TTGCCTCGCCGATTAAAGGCCGTCGGGGGAGGGGAAAAGGGTGAGACAGAGGAGCGGGGGAAGAAGACAGAGGAGTGACT
CGTGGGTCGGCGTTCGCGTCCCGAACGAGTATGTGGTGACGTGGCGACTTTCTCCGCTATAAGATTCGCGCTGAAAAACC
AACGGTAAAGAAGGCGTTCGGGACGAGGAGGAGAAACATGGCACGTTCGGTAGATATCGATTCCGGTGATTTTTGGCTGT
TATTAGAGTTATTAAACACGACTTTGCGTGTCCATGTCCGATTCCAAACATGTGTATGTGTTCGTGTATAGGTTTCAAAG
CAATCACCCCCGCACCCTGCACCCTTGTAAAGAGCCTTTGGCAATACGCCGGCCTCGCGTACTGCTACTGCTCGAGCTAG
CTTGTGGAAGGAACCGAAACATCCAGCGTCGCTTCGCCGCCTTCGTCATCATCGCCGTCTTGCCGGAAAGTACTCTCGCG
TCGGCGTGCCGGGCTGGGCTGGGCCAACAGGGACAGGAAGCAAGCCAAGCCAAGCCAAGGGCCGGTCAGGTGAGGAGCCC
G----CCGCCACACATGTCTCTTCTCGCG---------------------------------------------------
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----------------TACATGCGACTTCCTTCCCACTTTGTTTTTCTTCTATTGGCTCGATTCAAATTCTGATATGAGA
TCTGTTGTT--AAGTTGCAGCTATTGGGATGGATTGATTATTATTCTGAATGCCTTACTATTATTTTGCCATGGATTGGT
CGGATCTTAGTTAGGCTATTTGTCGATTCCGGCTGCACTTTTCGTCTTTGATATAAAGAGAGTTCCCGGTCCGATTTCAT
TAGCGGTTCCAGTTGCACCAGGAGTAGGATTGTAGAATACAATTAAGACAAACTGATTTTGATTTATATTATACTCGAAT
TTGAATTGCAGGGCTACATAAAAACCGTC------------------------------------------------GAG
CATGCAGTTTCAGCGCAAGAATTCAATGGGGAAGAAAAAAAAGCATGCTAAAACGT-GGCCCATTGAGAAGCCGCAGCAC
CTTTATCTTGTCCTGGATGACTGGTCATGGGGATATAGTATTCGAAAGATCGACTTGACATTTGGCGACGAGCGGAGGGG
TGCCATCTACACCAGCGAGGATAGACTACCATCTGCCATGTTTTGCTTGCAGGGACGTCGTGGCGAGCCCAAAGCCATCA
TGGGTGCTTTTGACAACATGATTTTGGCTATGCCACCCTTGGACCACATACACGGGATGAACAATTTGGGTCTACATTGT
GGTGCCGTAATTGACATTCATGCACGGACCTTCATTAATGGACCATGGCAGGACACGTCGCTGGATGTGGTCAACCCAAT
CTACATTCCTGTTGGTGGCAGGCTCTTTTTCCTTGGTGATAGCTCCTCCTGGATGCTCTACCAGGCATGTGATGATGCCT
ACTTCTATAACTTCGTGTGGGCGTGGTCGGAGCTCCCCAAGCCAATCTTTCAGTGTGAACTTGTCACCTCCTATGCCGTG
CACCCAGATGAGCGGACCATCTTCGTTAGCGGGTCGTTTGACGCCCC-----TACCACCTTCAGCATCAACACAACCGAT
CCCGCCACCATCGGCTTGGAGGAGCCTGTGAACCCTCAGTGGAAGCAACATGGTATGTGGCAGCTGCCCTTCACTGGACG
TGGTTATTTCGATCCTGAGTTGGACGCCTGGGTTGGGCTTTCCGCACAGCTGGACACCATTGGCCACATCTGCTCATGTG
ATGTGGTGTCTACCAACTCCGACACAAGCCATCAGCAGTGCCCAGCCCTGAAGGTCGGCAAAGAGAACTTATTTGGCGAG
TTCCTAGACGAGAGGCACATAGGTGCCACCCTAGTCTATACGGGTGGTGAGAGCAAATTCTGCCTCCTGGAGGTCATCTG
CATGCAAGCTGACTTAGCTAACCAGCCAACTGAATCTGATGAGAAGAATGAGGACTTCGACGCTGGGTTGAATGACACTT
ATTCCGATGAGACGACTGTCGGTGAGGTGA------CTGATGAGATGAATGAGTACTCTACTAATGAGGTGAATGAGGAG
CAAGATCAGAAACGTTTTTTGCGGTTGACGACCTTTTCACTTAGGTATGACAGGAATGGAGACCTGACAACTGGCAATAG
CCGGCGGGTTCGGTACTATAGTTTGCCTCAAGGAGTTACTAATTCGATGCTTGAGTATCCCGTGGCATTCTGGATGTAAT
TAGAAACCATG-ATATGCATATTGCATCACATAATATTTGCCTGATGTAAACCTAGCAGGCATGATATGCGTCATGTAAT
TATCGCTTGCATGAACAACAGAACATGGGTGAGCGTCTGGAGATTTAAGGCTGATGTTATTTATGTAGTCATTTAAAATG
TTTTATTACTATGAATTTTGCTTAGCTTTTCTGTATGAATGTAATCTGCCTTCTGGATTTTTCATCTATAAGCATGGGAT
TGTGCACATGTTTGTTGCCCCTTCATGGCCTCATGGTGTCTACCGCTCAACTGCCTGCGGGTGATGACAACAGCGTCGAC
GAGGTGAGCACCTGCCCTCACGCATCTCCAGTGAGTGAGGCGACCTGCGGCGCACGTGCTCAACGGGGAGCACATTGACC
CAATCTTTTGGTGCGAAGTTGATAGTACTCACCTTACCCTTGCATTCTTTTGACTCT---TAGTGAATGAAAACAACACT
GTTGTCTTCCCTAAAAAATGACACTTTCCAAATCCACAAATAACCGTAATACGATGCTAACAAAAATGCTGCACATTTTT
AGCAACTCACAGCCAAGTCTGGCCACTAGAACTTAGTGGTAACTGGAACATAAAAGGATGAAAGGATGGGCTATGATGCC
TATATCTTCTTCAACCACAGAACCTAGAATAGTATGGTATAGGAGAAAATCCATTGGAAGGGGAAAGAGATATCTTCAGG
TTCCCAACTTAAGGTTGGGTTTCTAGGGAACCTCATGCGCACACCATGTCACCATAGGAACATGTAGCGTTGGGATGGAA
GAAGCAGCATGTTGAGGTAAGACAAACAGATGACTGGAAGGAAGTCATCAGTTTCCGTGGACGGACTGTCATCGCCAGTG
ATGTAGGACTGCTTGTTCCAGGGAACAATTTTACAAAAGTCATGCCTGATGCCTCCCCTTGAAGATTGATTCGTGCGGAG
GATTACTGGGATCAGGAATAAATTCCAATGCCTGCTGGAGGTT
>chr6A_305
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----------------------------------------------------------------GGTGATTTTTGGCTGT
TATTAGAGTTATTAAACACGACTTTGCGTGTCCATATCCGATTCCAAACATGTGTATGTGTTCGTG--TAGGTTTCAAAG
CAATCACCCTCGCACCCTGCACCCTTGTAAAGAGCCTTTG-------------CTCGCGTACTGCTCCTGCTCGAGCCAG
CTTGTGGCAGGAACCAAGACATCCAGCGTAGCTTCGTCGTCTTCATCATCAGAGCCGCCTTGCCGGAAATTGCTCAGGCG
TCGGCGTGCGGGCC--GGCTGTGCTAACAGGGACAAGA-GCAAGCCAAGAA-------------GTCAGGTGAGAAGCAA
AGTCACCACCACATATGTCTCTTCTCGCGCAGGGGCGGAGACAGGGGGTGCGAGCAGGGGTCAGACACCCCCTCGCCTCG
CCGCTGCTGTTCGAGGAATCCCTCTGTGCTCGTGGGGATTCCTCACGCACTTCAGTTTCGTCAGTGTAAGAAGAAGCAAT
AGGAGAGAAGCAGGTCGTATGTTCATGTATCTGTCGAGTGTTACAAATGTACAGAGAAGAGGAGGATGCAGGTGCGGCTA
CTACGCTAACAAACTCCGTAACAAACTCATCTAGATAAGCTCGTGCGATCATGCATTAGAGACTAGGACTGGTAGTTACG
GAGAGAGAGAGCTACGTTGGTTCAGTTTCAACGGGTTCACAAAATTCAGTTTGTTGGTTTCGCCCAAGTTTCAGTTGTTA
GCTAATTTCTCGCGCACGTCGTCCACTTCGTCCCATCAGTCATGCACGTACCCTACCTCGCCGCTGCACTCGCACACATC
GACGCCGGTAGTTGTTGGCCGGTCCAGTCAGTCTGACTCGGGCTTCGTCAGCATCGGTCCGGTCCCCCAAAACAGGACCG
CTCGCCTCCTCGGTCCGGTCCGGTCCGGCCCGCCGGCGGCCGGTCCAAACGACGGCTCGGATCGGGACCAGACCGTGTCC
ACCCTGAATTGTACGCACACATCAGAAAAAATGGATTATGTGCAGCCGTTGGATCAAGGAGGAAAATTTCCTATCCTTCC
CGTAATTACATTTGTGGCTTCTAGGTCTGGTGGGTCCGGACGGAAGTCCCTGCGCCGCCGCCCGTCGCCTCTCGCCGCTA
TCCGCCGTTATCGAGGTTGAGCCGCAGAGGGCAGTCCAGTACTCCACTCCAGCAGTATTGAATCCACGAGGGACATAGCT
GCTTGTCTGCTTCACCGGCCGCCATCATACATCAGCAGGTTAACTTCAAGGAATTAAGGTCCGTCACTATTGAATCTTTA
TGAATCACGATTATTCATTCTTTGAACTAAAGTTAAGTTACTAATTAGATGCAGTAAGATTGTGATTTAGAAATCTAATT
TCACTTATTGCTTAATGTTTCAATAATTGAAGGGTGAGGAAGAAGAATAAACTAAAAAATAGATTCGGTTTTCAAGCGGC
TCAAATATTACTAAACATGCAAATCCACTTGAGGATCAACCTATGGTAGATGATAGTTCTGATCCCAATGCAGTTGCTAT
GCAAACAAATGATCAGCATACTGTGGCATCAGTAGACATTTCAGGGCTAAGTAGAATTGGAAGCACAAGATATAAGAGGA
ATCTTGGCCCAGCTTCGAGATATTGTGCTTCTAGAACGATTATTATCTTGCTCGCCCCCCTCATGCCCAAATCCTGGCTC
CGCCCCTGTTCTCGTGTACATGCGACTTCCTTCCCATTTTCCTTTTCTTCTATTGGCTCGATTCAGATTCTGATACGAGA
TCTGTTGTTTTAAGTTGCAGCGATTGGGATGGATTGATTATTATTCTGAATGTCTTAATATTATTTTGCCATGGACTCGT
CGGATCTTAGTTAGGCTATTTGTCGATTTCGGCTGCACC-TTTTTCTTTTATAGTAAAAGAATTCCTGATCCGATTTCAT
TAGCGATTCCAGTTGCACAAGGAGTAGGATTATAGAATACAATCAATACAAACTGATTTTGATTTATATCGTACTCGAAT
TTGAATTGCAGGGCTACATAAAAACCATCAATAGGCACTTCGAGAAATTCAAATTGCATGACTACATAAAAACCATTGAG
CAGGCGGTTTCAGTGCAAGAAGCCAATGGGGAAGAAAAAAAT-CATGCTAAAACGGCGGCCTATTGAGAAGCCACAACAC
CTTTATTTTGTCCTGAATGACTGGTCATGGGGATACAATATTCGAAAGATCGATTTGACATTTGGCGACGAGCGGAAAGG
TGCCATCTGCACGAGCGAGCATATATTACCATCTGCCATGTTTTGCTTGCAGGGACGTCGTGGCGAGCCTAAAGCCATCA
TGGATGCTTTTGACAACATGATTTTGGCTATGCCACCCTTGGACCACATACATGGGGTGAACAGTTTGGGTCTACACTGT
GGTGCCGTAATTGACACTCATGCGCGGACCTTCATTAATGGACCATGGCAGGACACATCGCTGGATATAGTCAACCCAAT
CTGCATTCCTGTTGGTGGCAGGCTCTTTTTCCTTGGTGATAGCTCCTCCCGGATGCTCTACCAGGCATGTGATGATGCCT
ACTTCTACAACTTCGTGTGGGCGTGATCGGAGCTCCCCAAGCTAATCTTTCGGTGTCAACTTGTCACATCCTATGCCGTG
CACCCAGATGAGAGCACCATCTTCATTAGCGGGTCGTTCGACGGCCCTAGTCTACCACCTTCAGCATTAACACAACCGAT
CCCGCCACCATCAGCTTAGAGGAGCATGTGAACCCTCAGTGGAAGCAACATGGTATGTGGCAGTTGCCCTTCACCGGACG
TGGTTACTTTGATCCTGAGTTGGACGCTTGGGTTGGGCTTTCCGCACAGCTGGACACTATTGGCCACATCTGCTCATGTG
ATGTGGTGTCTACCAACTCCGGCACAAGCCATCAGCAGTGCCCAGCCATGAAGGTCGGCAAGGAGAACTTGTTCAGCGAG
TTCCCAGACGAGAGGCACATAGGTGCCACCCTAGTCTATACGGGTGGTGAGAGCAAACTCTGCCTCCTGGAGGTCATCTA
CATGCAAGCTGACTCGGCTGACAAGCCAACTGAATCTGATGAGAAGAATGAGGACTTCGACGATGGGTTGAATAACACTT
ATTCCAATGAGACGACTGTTGGCGAGGCGGCTGATTCTGATGAGATGAATGAGTACTCTGCTGATGAGGTGGACGAGGAG
CAAGATCATAAACGATTTTTGCGATTGACGACCTTTTCACTTAGGTATGATAGGAATGGAGACCTGAGAACTGGCAATAG
CCGGCGCGTTCGGTACTATAGTTTGCCCCAAGAAGTTAATGACTCGATGCTTGAGTATCCCGTGGCATTTTGGATGTAAT
TAGGAACCATGAATTTGCATATTGCGTCACATAATATG--------------------GGCATGATATGCGTCATGTAAT
TATCACTTGCATGAACAACAGACCATGGG--------TGGAGATTTAAGGCCGATGTTATTTATGTAGTCACTCAAAAAA
ATATTACC--ATGTATTTTGCTTAGCCTTTCTGTATGAAAATAATCTGCCTTCTGGACTTTTCATCTATAAGCATGGGAT
TGTGCACATGTTTGTTGCCCCTTAATGGCCTCATGGTGTCTACCGCTCAAACGCTTGGGGGTGATGACAACAGCGGCGAC
GAGGCGAGCACCTGCCCTCACACATCTCCAGTCAGTGAGGCGACCTGCGGTGCACGTGCTCAACGGGGAGCACAATGACC
CAATCTTTTGGTGCGAAGTTCATAGTACTCACCTTAGCCTTGCATTCTTTTGACTCCTCATAGTGAATGAAAACAACACT
GTTGCCTTCCCTAAAAAATGGCACTTTCCGAATCCACAAATAACCATAACACGATGCTAACAAAAATGATGCACATTTTT
AGCAACTTACAGCCAAGTCTGTCCACTATAACTTACTGGTAAC-------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
-----------------------------------S------------------------------SS------------
---------S------------------------------SSSSSSSSSSSSS-------------S----------S--
-------S-------S-S-----------S------S--S----S------SS----S-----------S-S---SS---
---------S--S-SS-----S--S----------S--S----------SSSSSSSSSSSSSSS----------S---SS
S------S-----S------------------------------------------------------------------
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------------------------------------S---SS-----------------------S---------S----
---------------------S------------------------------S----S-----------------S-S--
----------------------------S---------SS--SS-----S---SS--S---S----S-S-----------
-----S------------S------------S-----------S--S----------------------SS---------
--------------------------S-----------------------------------------------------
--S--S-------S-------SS------------------SS------------S-----S-----------S--S---
------S--------S-------------------S-S---------------S----------------------SS--
--------S---S------S---S-S-------------------------------------------S----------
---S------------------------------------------------S---S------S------------S---
----------------S------S--------------------------------S---------S-S-----------
--S----------------------------------------------S------------------------------
-------S-----------------S----------------S--------S----S----------S------------
------------S-S---------S-------------S----S-----------------------S------------
------------S----S-------S-------------------------------------S----------S-----
------S--S-----------------S-----------------------------S----------------------
---------------------S-------------------------S-------------S--------S--SS-----
----S----------------------------------------------------S---------------------S
--------------SS---S--S---------------------------------------S----------S------
-----S-------------S--S----S-S-----------------------------S--S--------S-S------
--------S-----S--------S--------------------------S----------------S------------
------S--------------------S----S-----S-S-S--------------------------S----------
---S----------S----------S-----------SSSSSSSSSSSSSSSSSSSSS----------------------
----S-----------------S------SSSSSSSS--------------S-------------------S-S----SS
S-S-SSSSSS---S------------S------------SS----------------S----------------------
-----------------------S--------------------------SS--S--S-----------------S----
----S----------------S----------S-----------------S-----------------------S-----
--------------------S---------------S-------------------S-----------------------
----S---------------S--------S---------------S---S------------------S-----------
-------S-------------S------S------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_98
------------------------------------------------------------------------------GC
TTGCCTCGCCGATTAAAG--------------------------------------------------------------
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>reverse_3274
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-------------------------------------------------------------------------TGGCGAG
TTCCTAGACGAGA-------------------------------------------------------------------
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>forward_285
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-------------------------AGGAGGAGAAACATGGCACG-----------------------------------
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>reverse_3275
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--------------------------------------------------------------------------GGCGAG
TTCCTAGACGAGAG------------------------------------------------------------------
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>forward_289
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-----------------------------GGAGAAACATGGCACGTTCG-------------------------------
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>reverse_3446
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-----GATGAGACGACTGTCGGTGA-------------------------------------------------------
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>forward_2203
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-----------------------CGATTCCGGCTGCACTTTTC-------------------------------------
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>reverse_4022
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---------------------GCATCTCCAGTGAGTGAGGC---------------------------------------
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-------------------------------------------
