>input_sequence_55947
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-------ATGACCGCCGGTTTTAGCTGCCCCGACCTGGAGGCCCGGCTGACGGAGGCCTACACGCCGTCGCTGCCGCGCT
GCGGCGCGCTCAAGGGGAAGGGCTGGTTCCCGATATACCACAACACCTGGGACCTGGTCGACCACGACTACGTGCCGTGC
TTCAAGGAGCAGGCGAGCCTCGTGTACGACCCCGCTCTCAACGACTACCGGAACTTGCCCGGCGTCGAGACGCGCGTGCC
CAACTTCGGCTCCGCCTACGGATTCAATGAGAAAAAGATTGTCCCGTAAGTTGGTCCACTGGTTAATTTAATTAATTATA
TATGCGTCAGTTCTTGCACTGGTTACTGGAATGCTCTGACGTTCCAAATGTCCAGCGACCGTGAGAAGCTCTGCTTGGTG
AGCCTTCGCAAGGAAATAGAGGCGCTGGGATATCGCGACGGGGACACCTTTTCGGAGCTCCGTACGACATAGGCACGCAC
CGCCGCCGCCTGGCCAGCCATCCGAGGTGTACTCCGACTACTTCGCTCGTGTCAAGGAGCTGGTGCAGCACGCGAGCGAG
AAGAACCAGAACAAGCCGGTCATCCTCATCGGCCACAGCTTCGGCGCCAGGGTCGTTCTCGACTTCGTCAATTCAACCCC
GTTGCCATGGAGGGAGAAGTACATCAAGCACCTGTTCCTCATCTCGCCTGCAGTCCCCACGGGCTTCACGATGGCCCTCA
CCCACCTCACCGCCGGCCCGTCTGTCTTCCCAGTCGCTACGGTTCCGTTCATGGAGTTGCGGGCATTGTGGAGAACTTTT
GCCAGTTCTCTTTTGGCCATGCCGTCTCCCGTGGCCTTCGGGGACAAGCCCATCATAATAACCCAACGCAAGAACTACTC
CGCGTATGACATCGAGGATTTTCTTCTGGCCCTCGGTTTCAGCGCCGAAGAAACCGTGCCCTTTGTGAAGCGGGTGCTTC
CGACGATGCTGAACGTGGAGGCGCCATTGGTGCCAACGACGCACATCATCGGTACGGGGATCCAAACATCGGAGCAGCTG
GTGTTCTGGGAAGGTAACTTTGACGTGGCTCCAGAGAACGTGTACGGCGATGGAGACGGGTCCATTAATTTGGTCAGCCT
ATTAGCATTTGAGAAGGAGCTGCGTAGGCAGCAAAATCAGAATAATGCGCCCTACAAGTTCGTCGCCATTGCTAATGCTA
CGCACTCCGGTATTGTCATGCAGGAACATTTGCTCAGGAGGGTTATGAATGAAATTCTCGAAGCAAATCGCTGA------
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>chr2B_1_TraesCS2B01G405400
GAGCAACACCTTCAAGAAGGAATG---CGACGACGACACTGCTGCCCGGACTAGTCCTAGGGTTTCCCTCGGTATGCA-G
AGGGTAGTGGGGAGGGGCATGCCCA-------CTTCAGGAAGGCCCGACGGCGTCCGCAGGTGTCGTCGCGTCAGAGCTG
GACGAGCGGTCAGGTATTTCTCCCGACCC-AAACACCTACCACCACCCCGGACGCTCGGTAGTGTACCGCCCAA-CCTGC
CGCCCACTAGCATATGCCACCACGATCAACGAACGGTCTCCGCCCTCTTACTGAGTCCACGGACACGAGACCTGGAGGAC
GAAAGAGGAGACATTGGGCTTGGGGGCGTCCGCAACACAGCTGGCGGGAGGGGACAACCTCCACCACCATCGCGGAGCCG
ACCGGACGCGGCGACAGGG-ACCTACCAGGCCCCTACTGGCCCGACCAGAACCAAATGGATCCGGACAGCCCCCGCCGCC
CCGCTGGAGTTCACCGCCTCCTTGCCGCCG--------------------------------CCACCAGGGAGTAGCGCC
G-CGTGCTCTGACTCGCCGGCCCGCCCCAACCCAGATGGGGCCCGAAAGGGCCCAGATCTAGGCCGCGCGGGTGCCGCCG
ACCGCTAACACCGCTACATCGTATCGCGACCAACTGGCCCGTCACCGCCAGCGTCACGCGCGGCAGGGCCCGGCGGACCA
TGCCGCCGGCGGCGGCAGGGGAGAACGGCAGGGAAGGGGCTGCGGATCAGGGGGTTTGCCTTGGCCTATCGATTGGCCCA
GCAGGATAAGGCTATCTTTTTTGTCTGCGACTTGTGAGGGATATACGTATATATGCAGCGTGAAGCTATACAGGATGGAT
GACCACCTCGGATTGGGAAGTGGTAGCTGCTACTAGTAACCATGAAGACATGGCTGCTCCGGTTGCTACATCTTGTGCTC
CTGCTCCTCCCTCCTCCCCTCCGCGACAACTTCATGGCGAGCCAACGGCCAAGTGGCGACGGCCTCGAAGTCCACCACCC
GATAGTCATGACCGCCGGTTTTAGCTGCCCCGACCTGGAGGCCCGGCTGACGGAGGCCTACACGCCGTCGCTGCCGCGCT
GCGGCGCGCTCAAGGGGAAGGGCTGGTTCCCGATATACCACAACACCTGGGACCTGGTCGACCACGACTACGTGCCGTGC
TTCAAGGAGCAGGCGAGCCTCGTGTACGACCCCGCTCTCAACGACTACCGGAACTTGCCCGGCGTCGAGACGCGCGTGCC
CAACTTCGGCTCCGCCTACGGATTCAATGAGAAAAAGATTGTCCCGTAAGTTGGTCCACTGGTTAATTTAATTAATTATA
TATGCGTCAGTTCTTGCACTGGTTACTGGAATGCTCTGACGTTCCAAATGTCCAGCGACCGTGAGAAGCTCTGCTTGGTG
AGCCTTCGCAAGGAAATAGAGGCGCTGGGATATCGCGACGGGGACACCTTTTCGGAGCTCCGTACGACATAGGCACGCAC
CGCCGCCGCCTGGCCAGCCATCCGAGGTGTACTCCGACTACTTCGCTCGTGTCAAGGAGCTGGTGCAGCACGCGAGCGAG
AAGAACCAGAACAAGCCGGTCATCCTCATCGGCCACAGCTTCGGCGCCAGGGTCGTTCTCGACTTCGTCAATTCAACCCC
GTTGCCATGGAGGGAGAAGTACATCAAGCACCTGTTCCTCATCTCGCCTGCAGTCCCCACGGGCTTCACGATGGCCCTCA
CCCACCTCACCGCCGGCCCGTCTGTCTTCCCAGTCGCTACGGTTCCGTTCATGGAGTTGCGGGCATTGTGGAGAACTTTT
GCCAGTTCTCTTTTGGCCATGCCGTCTCCCGTGGCCTTCGGGGACAAGCCCATCATAATAACCCAACGCAAGAACTACTC
CGCGTATGACATCGAGGATTTTCTTCTGGCCCTCGGTTTCAGCGCCGAAGAAACCGTGCCCTTTGTGAAGCGGGTGCTTC
CGACGATGCTGAACGTGGAGGCGCCATTGGTGCCAACGACGCACATCATCGGTACGGGGATCCAAACATCGGAGCAGCTG
GTGTTCTGGGAAGGTAACTTTGACGTGGCTCCAGAGAACGTGTACGGCGATGGAGACGGGTCCATTAATTTGGTCAGCCT
ATTAGCATTTGAGAAGGAGCTGCGTAGGCAGCAAAATCAGAATAATGCGCCCTACAAGTTCGTCGCCATTGCTAATGCTA
CGCACTCCGGTATTGTCATGCAGGAACATTTGCTCAGGAGGGTTATGAATGAAATTCTCGAAGCAAATCGCTGAAGAACA
TAAGGACATGTACCTTAAGATAAATATTGAGATGGAGAAAAAACTTCCCTTTTCTTAATTACGAGATGCCCTCTTAGCAC
AATATCTCTTCCGTATATGGACTATGTAAACATTTATTCACACAATTACGTTAATACGGGCAAGTCACGAACTAATCGTG
TAAATGCTTATCAAATTTTGCTCGTGATTTACCTATCTAAATAGTATTTTGAATTTTATTTGTTAATCACTTATTTGATA
TAAGAATTTATGGATTTACCAAAGAAAGTATGATTTTATTGGTAAGTCAACAAAAGATGTGATAGTTAAAAATGTTTTTA
ACAAGAAGAAACCCGGTGAGAAAATCAAAGATATAAGAGGTAAAAAACATAATGGGAAAGAGGGAGAAGGAACATGCATA
AAGTTGGACGAAGCACCAAAAAAAAGGAATACTATTTTTTATAAGTAGTGTATAAAAAATTTAGGCCCGCGCCAGGCGCC
GGCCGGCCCAAATTTCGGCCAGTCGGCTGCCTAGCGTTAGATCTCACACGCATGAGTGGCTCTAATTAGCCCGTCGATTA
GGTTGTCATCTTTCTCCTGCCCGCACACGCGCTTGAGAAACAAAATGGAGGAGCTCCCGCGCTCGCCCGCCGCGTCGCGT
TCGGTCTTGGCCGCCCCGCGCTCGCAAGTGCTTGCCGGCCATCCCGGGCCGCCTGTGCTCGTCGCCTCCCGTCATAAAAT
TACTGCCAAATTTCGGCGCTCCTTTGTTCCTCTCCCTGCGATACTCATCTCCTCTCGGTTCCTCCCACGCTCGCACGTGC
TTGCCGGCCATCCTGGGCTGCCTGTGGTCGTCGCCTCCCGTCATAAAATTGCTGCCAAATTTCAGTGGTCCTTTGTTCCT
CTCCCCACGATACCCGTCTCCTCTCGGTTCCTCCCCCTCACCATGGCCGGTTGGCCATCTCCACGTCGCCCTTGGCCACC
CCGTGCCACTCGCGCTCGGCGTCTCCCATCGCAA
>chr3B_2
-AGCAACACCTTCAAGAAGGAG-GCGACGATGACGCCGCTGCTGCCCGGACTAGTCCTAGGGTTTCCCCCGGTACGCAGG
AGGGCAGTGAGGGGAGGGGTGTACCCGACGCCCTTCAGGAAGGTCCGACGGCACCCACAGGCGTCGCCGCGTCGGGGCCG
GACAAGCCGCCAGAGATTTCTCCCAACCC-AAACCCCCACCACCACCCCAGACGAATCATAGTGCACCGCCCAT-CGCGC
CGCCCACCAACATGTGCCATCACGATCACCGGATCAACTCCGCCGTCTCCCTAAGGTCACCGACACGAGACCTGGAGGAT
GGGAGAAGGGAGAGTGTCCTTGGGGGCATCCGCGACATCACCGACGTGAGGGGACAACCACCACCGCCACCGCGGAGCCG
ACCGGACGCACGGACAAGGGACCTACCAGGCACCGA--GGCCCGGCCGAACCCAACAGGGTCCGGACAGCCCCTGCCGTC
ACGCTGCAGCTCATCGGCCGATGAAGCCGCCACC----------------------------------------------
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>chr7B_2
-AGCAACACCTTCAAGAAGGAG-GCGACGACGACGCCGCTGCTGCCCGGACTAGTCCTAGGGTTTCTCCCGGTACGCAGG
AGGGCAGTGAGGCGAGGGGTGTACCCGACGCCCTTCAGGAAGGTCCGACGGCACCCACAGGCGTTGCCGCATCGGGGCCG
GACAAGCCGCCAGAGATTTCTCCCAACCC-AAACCCCCACCACCACCCCAGACGAATCATAGTGCACCGCCCAT-CGCGC
CGCCCACCAACATGTGCCACCACGATCACCGGATCAACTCCGCCGTCTCCCTGAGGTCACCGACACGAGACCTGGAGGAT
GGGAGAAGGGAGAGTGTCCTTGGGGGCATCCGCAACATCACCGACGTGAGGGGACAACCACCACCGCCACCGCGGAGCCG
ACCGGACGCGCGGACAAGGGGCCTGCCAGGCACCGA--GGCCCGGCCGAACCCAACAGGGTCCGGACAGCCCCTGCCGTC
ACGCTGCAGCTCGTCGGCCGACGAAGCCGCCACCGCCCGTAGACCACCGCCACTTCACCAC-CAACCAGGGAGCAGCGCC
GCCACGCACCGAGTCGCCGGCCCGCCCTAGCCCAGATGGGGCCCGAAAGGGCCCAGATCTGGGCCGCGCGGGCGCCGCCG
GCCACCAGCACCGCCACACCGCCCCGCGGCCAAC----------------------------------------------
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>chr2D_2
-AGCAACATCTTCAGGAAGAAATGCGACGACGACGCCGCTGCTGCCCGGACAAGTCCTAGGGTTTCCCCCGGTACACG-G
ATGGCAGTGGGGAAGGGGTATCA-CCGACGCCCCTCAGGAGGGTCCGGCAACGCCCACGGGCGCAGTCGAGACGGTGGCG
AACGAGCCGCCAAAGATTTCTCCCACCCCGAAACCACCACCGCCACCTCAGACAATCGGACGCGCACCGCCCATACAAGC
CGCCCACCAGCCTCTGCCACCACGGATACCACTCCATCTTCACCGTCTCACTGAGGTCGCCAACACGAGGCCTGGAGGAA
GGACGAGAAGACACCGGGCTCAGGGGCAACCGCACCACAGCCAACAGGAGGGAACAACCTCCGCCGCCG-CGCGGAGCCG
ACCGAACGTAGCGACAGGG-ACTTGCCAGGCCACACCA-GCCCGGCCGGACCCAAACGGGTCCGGACAGACCCTGCAGCC
AC-------------------CGGAGCCACCACCACCCCAG--CCACCGCCGCCTCGCCACACCACCAGGGAGCCACGCC
ATCGCGCCCGGACCCGCAGGCCCGCCCCAGCCCAGATGGGGCCCGAAAGGGCCCAGATCAGGACCGAGCGGGCGCCGCCG
GCC-----------------------------------------------------------------------------
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>chr2B_25
---------------------------CGACGACGCCGCTGTTGCCCGGACTAGTCCTAGGGTTTCCCCCGGTACGCG-G
GGGGCAGTGGGGGGAGGGGTGTACCCGACGCCCTTCAGGAAGGTCCGGCGGCACCCACAGGCGTCGCCGTGTCGGGGCCG
GACGAGCCGCCAGAGATTTCTCCCAACCC-AAACCCCCACCACCACCCCAGACGAATCATAGTGCACCGCCCAT-CACGC
CGCCCACCAACATGTGCCACCACGGTCACCGAATCAACTTCGCCGTCTCCCTGAGGTCACCGACACGAGGCCTGGAGGAC
GGGAGAAGAGATAGTGGCCTCGAGGGCATCCACAACATCGCCGACGTGAGGGGACAACCACCACCGCCACCGCGGTGCCG
ACCGGACGCACGGACAAGGGGCCTACCAGGCACCGA--GGCCCGGCCGGACCC-------------------------TC
ACGCTGCAGCTCGCCGGCCGACGAAACTACCACCGCCCGCAGACCACTGCCTCTTCGCCAC-CAACCAGGGAGCAGTGTC
GCCGCGCACCGAGTCGTCGGCCCGCCCTAGCCCAGATGGAGCCCGAAAGGGCCCAGATCTAGGCCGCGCGGGCGCCGCCG
GCCACCAGCACCGCCACACCGCCCCGCGGCCAAC----------------------------------------------
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>SNPs
S----------------------------------S-S------------------------------S-----S-----
----S------------SS---S-S------------------S---------S--S----S-----------S-S--S-
-------S-S---SS---------S---------S--S-----------S----S---------S--------S--SS--
-------S-----S--------------S-----SS--------S---S------SS---S-------------------
-S-----------S-------------S-------------S-S---------------------S---S----------
----------------------------------S--S------S--S--S-----S--S-------------S------
S-----S--S------S-SSS-S-SSS-SS-------------------------------------------S------
----S--S-S-------------------S------------------------------------------S-------
S--S-S-S------S---S--SSS----S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_967
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-------------------------------------------------------------------ACATCTTGTGCTC
CTGCTCC-------------------------------------------------------------------------
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>reverse_2904
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-----------------------CACACGCGCTTGAGAAACAA-------------------------------------
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