>input_sequence_55902
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------ATGGCGGAGAGGGTGACCGCGATGGCGTCGCAGG
GCATCGTGGTGATCTTTGGGGCGAGCTACTGCTGCATGTCCCACACCATGACGGGGCTCTTTGCGCAACTGGGCGTGAGC
TCTACGGTGCACGAGGTGGACAAGGACCCCCAGAGAAAGGATCTGGAGAGGGCGCTCGCTGGCATGGTGGGCCAGAGCCC
GGCGGTGCCTGCGGTATTCATCCGTGGCGCACTCGTCGGCGGTACCAGGCAGGTCATGGAGCTGCACCTCGGCGGCCATC
TCGTGCCGCTCCTCCGCCAAGCGGGGGCCCTGTAGTCCTGATATGTACTTACATACTTGTTTATCAGATGTACCTCTTGT
TA------------------------------------------------------------------------------
-----AGAGAAGGGAACAATTCTTTGTGAGAGAGTGTTCA----------------------------------------
--------------------------------------------------------------------------------
----------TTCTGATGCTGATTAAAGA-TATGCTTAATTTAGACACAATACATCACGCATAGCTCCCATGGAGAGTTT
CTGAGAGAGAGTGTTCATTCTGATAGATGCCATGAAGAGTTTGTGTGAGACAGTGTTCATTCTGATG-----------TG
TACTGGTTACCAAATTGA---GCAAATACTAAGCTTAATTAGCAACGCGAATGTATAGAGTTTGTAGCACTGATTCACAC
TTGTAGAACACTAGGTATTGCAATCATGTAATTTTGATCTTAAGAGCCTCTGTTCATGTCAACCAAGAAGCCTGAAGTTT
GCACTGAATATTCTAACTACTGATCAGTAATGCCAAAAAAAAACATCATAAAATAATATAAAAGATTAGCCACAATTCTG
GCCGTACCTAACTGTGTGATTTTTTTGCCCCTCCCAAAAGCAATGTTTACAAGTAGTGCTAGAACAGAACCTTTTAACAC
AGGATGTATATTATCCCCGATTTTCTACACGTCACAGCTATCCCCTTTCACCTCGATTAAGCACTTCCTCTTATCAACAA
ACTTTGCCCCACACCATGACGGGGCTCATTCAGCTATAGTGGAGAGGGTGACCGCGATGGCGTCGCAGGGCATCATGGTG
ATCTTTGGGGCGAGCTACTGCTGCATGTCCCACACCATGACGGGGCTCTTTGCGCAACTGGGCGTGAGCTCTACGGTGCA
CGAGGTGGACAAGGACCCCAGAGAGAGGATCTGGAGAGGGCGCTCGCTGGCATGATGGGCCAGAACCCGGCGGTGCCTGC
GGTATTCATCAGTGGTGCACTCGTCGGCGGCACCAGGCAGGTCATGGAGCTGCACCTCGGCGGCCATCTCGTGCCCCTCC
TCCGCCAAGCGGGCGCCCTGTAG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>chr3D_1_TraesCS3D01G456300
CAGCCCGTGTGGGCTGCCTCCTGCTCACGCCAAACACGGTGTGTTGGCGGATGTCTAATATACCACACGTGTGATGTCTA
ATATATGTTTTTCTATATATGTTAGTAATGACCAAAGTCCCGCCAGCTTATCTTGGATCTTATTCGTCTTTGTTTTTACT
TATTCGAAACATCATAAAATAACAAGTCATGCCTAGCCGGCAGGTGCTACGCAGTGTCATGCCTGGTCGGCAGGTGCTAC
GCACGACAGATCCTCCAGAATCTTTGCGTCTGGATGGATAAGCGCAGAACGGTGGCGGCGTTGGGCGCCGTGGTGGCGTC
AACAGATGGACGGACTGACAAGGATGATGCGGATCTCTCTCCTGAAGATGGGTCAGCGGTCCGATGATGATGGCGGCTTC
TAAAATGTGTGCATGTGATATACGCTCTAGGTCTGCAGTACCGGCTATTTGTTCCGATACGTTATGTGGACGGATCGGCG
ACGACACCGGTTTTAGATATGAGGAGTGAGAGCACTCCACATTATCGAGTTTTGTAGGTGTGAGTGATGGGTTTGGGTGG
CTTGATGTATGTTCTTGTTAGACCTATGTTGAATAATAAATAAAGATGGTTGTATGCATTGATTGATGCAGAGGCCGGGG
GTTTTAACCTCCTTTTCAAAAAACATCATAAAATAA----TATAAAAGATTAGCCACAATTCTGGCCGTACCTAACTGTA
TGATTTTTTT-GCCCCTCCCAAAAGCAATGTCTACAAGTAGTGCTACAACAGAACCTTTTAACACAGGATGTATATTATC
CCCGATTTTCTACACGTCACAGCTATCTCCTTACACCTCGATTAAGCACTTCCTCTTATCAACAAACTTTGCCCCAGCCA
TCTATAAATGTTGGGTCATCACCATCACAAA-GCTGCAAGAAGCAGCAGCCTATAGCTAGCTCAACTCAAGTGAGCTGAG
CGATCAAGATATACAGAGGAGAGATCGAGAGCTAGGCAATTCAGCAATGGCGGAGAGGGTGACCGCGATGGCGTCGCAGG
GCATCGTGGTGATCTTTGGGGCGAGCTACTGCTGCATGTCCCACACCATGACGGGGCTCTTTGCGCAACTGGGCGTGAGC
TCTACGGTGCACGAGGTGGACAAGGACCCCCAGAGAAAGGATCTGGAGAGGGCGCTCGCTGGCATGGTGGGCCAGAGCCC
GGCGGTGCCTGCGGTATTCATCCGTGGCGCACTCGTCGGCGGTACCAGGCAGGTCATGGAGCTGCACCTCGGCGGCCATC
TCGTGCCGCTCCTCCGCCAAGCGGGGGCCCTGTAGTCCTGATATGTACTTACATACTTGTTTATCAGATGTACCTCTTGT
TA------------------------------------------------------------------------------
-----AGAGAAGGGAACAATTCTTTGTGAGAGAGTGTTCA----------------------------------------
--------------------------------------------------------------------------------
----------TTCTGATGCTGATTAAAGA-TATGCTTAATTTAGACACAATACATCACGCATAGCTCCCATGGAGAGTTT
CTGAGAGAGAGTGTTCATTCTGATAGATGCCATGAAGAGTTTGTGTGAGACAGTGTTCATTCTGATG-----------TG
TACTGGTTACCAAATTGA---GCAAATACTAAGCTTAATTAGCAACGCGAATGTATAGAGTTTGTAGCACTGATTCACAC
TTGTAGAACACTAGGTATTGCAATCATGTAATTTTGATCTTAAGAGCCTCTGTTCATGTCAACCAAGAAGCCTGAAGTTT
GCACTGAATATTCTAACTACTGATCAGTAATGCCAAAAAAAAACATCATAAAATAATATAAAAGATTAGCCACAATTCTG
GCCGTACCTAACTGTGTGATTTTTTTGCCCCTCCCAAAAGCAATGTTTACAAGTAGTGCTAGAACAGAACCTTTTAACAC
AGGATGTATATTATCCCCGATTTTCTACACGTCACAGCTATCCCCTTTCACCTCGATTAAGCACTTCCTCTTATCAACAA
ACTTTGCCCCACACCATGACGGGGCTCATTCAGCTATAGTGGAGAGGGTGACCGCGATGGCGTCGCAGGGCATCATGGTG
ATCTTTGGGGCGAGCTACTGCTGCATGTCCCACACCATGACGGGGCTCTTTGCGCAACTGGGCGTGAGCTCTACGGTGCA
CGAGGTGGACAAGGACCCCAGAGAGAGGATCTGGAGAGGGCGCTCGCTGGCATGATGGGCCAGAACCCGGCGGTGCCTGC
GGTATTCATCAGTGGTGCACTCGTCGGCGGCACCAGGCAGGTCATGGAGCTGCACCTCGGCGGCCATCTCGTGCCCCTCC
TCCGCCAAGCGGGCGCCCTGTAGTCCTGATATGTACTTACATACTTGTTTATCAGTTGTACCTCTTGTTAAGAGAAGGGA
ATAATTCTTTGTGAGAGAGTATTCATTCTGATGCTGATTAAAGATATCCTTAATTTAGACACAAGACATCACACATAGCT
CCCATGGAGAGTTTCTGAGAGAGAGTGTTCATTCTGATAGATCCCATGAAGAGTTTGTGTGAGACAGTGTTCATTCTGAT
GTGTACTGGTTACCAAATTGAGCAAATACTAAGCTTAATTAGCAATGCGAATATGTAGGTTTGTAGCACTGACTCACACT
TGTAGAACAGGTATTGCAATCATGTAATTTTGATCTTAAGAGCCTCTGCTCATGTCAACGAAGAAAGCCTGAAGTTTGCA
CTGAAGATTTTAACGTAGCGATCAGTAATGCCACATG-AAA----------------AAAAAGAGCAGCAACTGCAATAA
AAATAAGTAAATAATA--------CTGAAAGTACTG--------------------------------------------
------------------------------------------TAATTTTGTTTTCCAG----------------------
---TATATTTTGTCCACAAAGATATTAATCTGCCCATCATCACAAATTCATTACCAGTAGTCCTAAGAGAAAATCTTTAG
GTACGATCTGGAACTAGTTCCATACTTTATTTTCTGATATCCTTGCATC-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CCTTTTTCTATACAAGTACTAAGAAGACCTAGAGATAAACGAGAAACATAATTCTTCTATGATAGAAAATAGAAAC
ATCACACATAATAGTTAGCACAGAATTTTAAACACACATCAAAATGACTTGATAATCGTGGGAT----------------
--------------------------------CAATATGCTCAGTAGGCACTTCGTTCAACATGGAAGGGTATCGAGACA
CGCATGGATTTCATGCAAACTATGTAACAGCCAGAGCGCCATGAGCAGAATTTTACTTGCATCATCAAAGAAGCTAGTAG
CTCATAGTGGATCCAATTCATATAACTTGCAG---CTCATGAGGATACAAACATCAATGATGTTATGACGCACCAACTCA
CTCAACAATCTTTAGATGAAAGGCGGAGCAGT----ACATAACCCTCTA
>chr3D_1
CAGCCCGTGTGGGCTGCCTCCTGCTCACGCCAAACACGGTGTGTTGGCGGATGTCTAATATACCACACGTGTGATGTCTA
ATATATGTTTTTCTATATATGTTAGTAATGACCAAAGTCCCGCCAGCTTATCTTGGATCTTATTCGTCTTTGTTTTTACT
TATTCGAAACATCATAAAATAACAAGTCATGCCTAGCCGGCAGGTGCTACGCAGTGTCATGCCTGGTCGGCAGGTGCTAC
GCACGACAGATCCTCCAGAATCTTTGCGTCTGGATGGATAAGCGCAGAACGGTGGCGGCGTTGGGCGCCGTGGTGGCGTC
AACAGATGGACGGACTGACAAGGATGATGCGGATCTCTCTCCTGAAGATGGGTCAGCGGTCCGATGATGATGGCGGCTTC
TAAAATGTGTGCATGTGATATACGCTCTAGGTCTGCAGTACCGGCTATTTGTTCCGATACGTTATGTGGACGGATCGGCG
ACGACACCGGTTTTAGATATGAGGAGTGAGAGCACTCCACATTATCGAGTTTTGTAGGTGTGAGTGATGGGTTTGGGTGG
CTTGATGTATGTTCTTGTTAGACCTATGTTGAATAATAAATAAAGATGGTTGTGTGCATTGATTGATGCAGAGGCCGGGG
GTTTTAACCTCCTTTTCAAAAAACATCATAAAATAA----TATAAAAGATTAGCCACAATTCTGGCCGTACCTAACTGTA
TGATTTTTTT-GCCCCTCCCAAAAGCAATGTCTACAAGTAGTGCTACAACAGAACCTTTTAACACAGGATGTATATTATC
CCCGATTTTCTACACGTCACAGCTATCTCCTTACACCTCGATTAAGCACTTCCTCTTATCAACAAACTTTGCCCCAGCCA
TCTATAAATGTTGGGTCATCACCATCACAAA-GCTGCAAGAAGCAGCAGCCTATAGCTAGCTCAACTCAAGTGAGCTGAG
CGATCAAGATATACAGAGGAGAGATCGAGAGCTAGGCAATTCAGCAATGGCGGAGAGGGTGACCGCGATGGCGTCGCAGG
GCATCGTGGTGATCTTTGGGGCGAGCTACTGCTGCATGTCCCACACCATGACGGGGCTCTTTGCGCAACTGGGCGTGAGC
TCTACGGTGCACGAGGTGGACAAGGACCCCCAGAGAAAGGATCTGGAGAGGGCGCTCGCTGGCATGGTGGGCCAGAGCCC
GGCGGTGCCTGCGGTATTCATCCGTGGCGCACTCGTCGGCGGTACCAGGCAGGTCATGGAGCTGCACCTCGGCGGCCATC
TCGTGCCGCTCCTCCGCCAAGCGGGGGCCCTGTAGTCCTGATATGTACTTACATACTTGTTTATCAGATGTACCTCTTGT
TA------------------------------------------------------------------------------
-----AGAGAAGGGAACAATTCTTTGTGAGAGAGTGTTCA----------------------------------------
--------------------------------------------------------------------------------
----------TTCTGATGCTGATTAAAGA-TATGCTTAATTTAGACACAATACATCACGCATAGCTCCCATGGAGAGTTT
CTGAGAGAGAGTGTTCATTCTGATAGATGCCATGAAGAGTTTGTGTGAGACAGTGTTCATTCTGATG-----------TG
TACTGGTTACCAAATTGA---GCAAATACTAAGCTTAATTAGCAACGCGAATGTATAGAGTTTGTAGCACTGATTCACAC
TTGTAGAACACTAGGTATTGCAATCATGTAATTTTGATCTTAAGAGCCTCTGTTCATGTCAACCAAGAAGCCTGAAGTTT
GCACTGAATATTCTAACTACTGATCAGTAATGCC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AAAA----------------AAAAAGAGCGGCA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>chr3B_88
--------------------------------------------------------------------------------
-------TTTTTCTATATATGTTAGTAATGACCAAAGTCCCGACAGCTTATCTTGGATCTTATTCGTCTTTGTTTTTACT
TATTC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAAACATCATAAAATAG----TACAAAAGACTAGCCCCAATTCTGGCCGTACCTAACTGTA
TGATTTTTTTTGCCCCTCCCAAAAGCAATGTTTACAAGTAGTGCTAGAACAGAACCTTTTAACACCGGATGTATATTATC
CCCGATTTTCTACACGTCACAGCTATCCCCTTACACCTCGATTAAGCACTTCCTCTTATCAACAAACTTTGCCCCAGCCA
TCTATAAATGTTGGGTCATCACCATCAC-AA-GCTGCAGGAAGCAGCAGCCTATAGCTAGCTCAAGTGAAGTGAACTGAT
CGATCGAGATACAGAGGAGA------GATAGCTAGGCAATTCAGCAATGGCGGAGAGGGTGACCGCGATGGCGTCGCAGG
GCACGGTGGTGATCTTTGGGGCGAGCTCCTGCTGCATGTCCCACACGATGACGGGGCTCTTTGCGCAACTGGGCGTGAGC
TCTACGGTGCACGAGGTGGACAAGGACCCCCAGAGAGAGGATCTGGAGAGGGCGCTCGCTGGCATGGTGGGCCAAAGCCC
GGCGGTGCCTGCGGTATTCATCTGTGGCGCCCTCGTCGGCGGCACCAGGCAGGTCATGGAGCTGCACCTCGGCGGCCATC
TCGTGCCCCTCCTCCGCCAAGCGGGCGCCCTGTAGTCCTGATATGTACTTACATACTTGTTTATCAGTTGTACCTCTTGT
TA------------------------------------------------------------------------------
-----AGGGAAGGGAATAATTATTTGTGAGAGAGTGTTCA----------------------------------------
--------------------------------------------------------------------------------
----------TTCTGATGCTGATTAAACATTATGCTTAATTTAGACACAAGACATCACACATAGCTCCCATGGAGAGTTT
CTGAGAGAGAGTGTTCATTCTGATAGATCCCATGAAGAGTTTGCGTGAAACAGTGTTCATTCTGATG-----------TG
TACTGGTTACCAAATTGA---GCAAATACTAAGCTTAATTAGCAATGCGAATGTGTAGAGTTTGTACCACTGATTCACAG
TTGTAGAACACTAGGTATTGCAATCTTGTAATTTTGATCTTAAGAGCCTCTGTTCATGTCAACGAAGAAGCCTGAAGTTG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GCA
CTGAAGATTTTAACGTAGCGATCAGTAACGCCACATGAAAA----------------AAAAAGAGCGGCAACTGCAATAA
AAATATGTAAATAATT--------CTGAAAGTACTGCTTGTGGTGAGGAAGCTTCATTTGTGTTCTGG------------
---------ACAACCAGGTGCGCATATTTTCACCTTAAAACTTAATTTTGTTTTCCAG----------------------
---TAT---TTGTCCACAAAGATATTAATCTGTCCATCATCACAAATTCATTACCAGTAGTCCTAAGAGAAAATCTTTAG
GTACGATCTGGAACTAGTTCCATACTTTATTTTCTGATATCCTTGCATCA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CTTTTTCTATACAAGTACTAAGAAGACCTAGAGATAAACGAGGAACATAATTCTTCTATGACAGAAAATAGAAAC
ATCACACATAATAGTTAGCACAGAATTTTAAACACACATCAAAATGACTTGATAATCTTGGAAT----------------
--------------------------------CAACATGCTCAGTAGGCACTTTGTTCAACATGGAAGGGTATCGAGACA
CGCATGGATTTCATGC-AACTATGTAACAGCCAGAGCGTCATGAGTAGAATTTTACTTGCATCATCAAAGAAGCTAGTAG
CTCATAGTGGATCCAATTCATATAACTTGCAG---CTCATGAGGATACAAACATCAATGATGTTACGAAGCACCAACTCA
CTCAACAATCTTTAGATGAAGGGTGGAGCATT----ACACAACCTTCTA
>chr3D_660
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAAACATTGTAAAATACTACGTATTAAAGATTGGCCACATTCCTAGTGATACCTAACTGTA
TGAAA-TTTT-GCCCCTCTGAAAGGCAAAGGTTA-AAGTGGTGCCAGAAAAGAACCTTTTCACACAGGATATATGTTATC
CCTAATTTTCCACACGCCAGTGTTTA--CCTTACACCTCGATTAAGCACTTCCTCTTATCTATGCGC-TTGCTCCAGCCA
TCTATAAATGTTGAGTCATCACCGTCAC-AAAGCTGCAAGAAGCAACAGCCTACTGCTAGCTCAAGTGAAGTGAGCTGAT
CGATCGAGATACATAGGAGA------GAGAGCTAGGCAATTCAGCAATGGCGGAGAGGGTGACGACGATGGCATCACAGG
GCATGGTGGTGATCTTTGGGGCGAGCTGCTGCTGCATGTCCCACGCCATGACGAGGCTCTTTGCGGAGCTGGGTGTTAGC
T-TACGGTGCACGAGCTGGACAAGGACCCCCAGAGGGAGGATCTGGAGAGGGCGCTCGCTGGCATGGTGGGCCAGAGCCC
GGCAGTGCCGGCAGTATTTATCTGTGGCGCGCTAGTCGGCGGCATCAGGCAGGTCATGCAGCTGCATCTCGGCGGCCATC
TCGTGCCGCTGCTCCACCAAGCTGGTGTCGTGTGGTCCTGAGGCATTATTAATAATAATGGCCGATGCGTACTTGTGTAG
TAATCTACGTGTGATCATAACCTCAAAAGCTATAGCTAGTGATCGACAATACAGTGTGTGCCGCTACTTAATGTTGGAGT
ATATGAGAGAAGGGAACAATGCTTCTCGCCAGACATTGAACCCAACTCTCAGGCTTCTTGCCAGATAGATATATCTGTCC
CACTATGATGATCTGGCACGGAACATAGGACATGATCGATAGGAATTCATTCCCCGTGTTTGATCTTTGTGATATCTTCA
CTGGCTATGTTTCTGATGAGGTTTGGTTGCATCTCCTCTGACCAATGTGTGCTATTTCACTGTCTTTAATTCCTCTCCTT
AGTTTCAAACGTGTTTGCATGCATAGTACTTGTTATTACCTTCGAAACAACGTGTCCAATTATATCTGCAATTTGGCATG
TACTGGTTACCAAATTGATTAGCAGATACTAAGC----TTAGCAATGCGAATGTGTAGAGTTTGTATCACTGACTCAGAG
TTGTAGAACACTAGATCTTGCAGTCATGTAAGTTTGATCTTAAGAGCCTCCGTTCATGACAACAGGAGAGCCTGAAGCTT
ATACACAAGTG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TACTGCCAGATATCCAACAGAACTGCGCCGAATCTTGTAAGCCTGACAGCTGTGTGTTAAGATAT
TGCATATATGAAGACTTGCCAGTAA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TGCAGATTTTATCATAGCGATCAGTAATGCCAAAAAACCTTTGATGACAAGCAAGTAAATTGAGCAGCAACTGGAACAG
AAATAACTGAAAGTATTGCTTGTGCTGGAAGTATTACTTGTTGTGAGGATGCTTCATTTCTATTTCTGGATAGGGATGGC
TCAAAGGATACAACAAGGTGTGCATCTTTTCACATTAAAGCTTAATTTTGTTTCCAGTATTTTTTTCACAGCTTTTTTTT
CATTATATTATGTCCACAAAAATATAAATCCGGCCATCATCACTAGTTCACTACTAGTATTTCCAAGGGAAAATCGTTAA
GTAT------GAACTGGTTCGCTACTTAATTTTGTGATATCCTTTGGCCCAAGGCATCCGGAGAGAAAAATGTCATGCTA
GATGTCCACGTTATGCACCGATGGTATTTCTCCTTGCGCACAAATGGCAAAAACAGTCAATTAGAGTGGATCCAAATCTA
GCTTATCATGAACCCGTTGAAATTCAAGTTTGTAAGGGCTGTTGCCCGGATCTGGATCGTGTGTTCTGTTTGCCTGTTCA
ATAAAATGGGGCGGGGGACCCTATCTTTAAAAAAAAAACGTTGAATCATCAGCTGAAGCACTGAATTCGTTTGATACCGT
CGTTCCTTTTTCTATACATCATACTAAACTTCAGGCTTTCTCAGAACTTTCTTCTTCTTCATTTTCACTTATATATTCAC
AATCCTGGCCATGGCTAACTGTAAGATTTTGGCCCCTTCAAAAGGCAAAGGTTACAAAACATGGTAGAAGATAACCTTTC
AACAGAAGACATATTTTCAAAAGGTTAGAATGCAATATGCTCAA------------------------------------
-----------------------------------------------------------------CAAAGAAGCTAGTAG
CTCATAGTGGATCCAATTAATATATCTTGCAGGTCCTGATGAGAATACATACATCTAGGATGCCGAGAAGCACCAGCCCA
CTAAACAACCTTCAGATGAAAGGCAGAGCATTCACAACATAACCCTCTA
>chr3A_660
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAAACATTGTAAAATAA----TATTAAAGATTAACCACATTCCTAGCGATACCTAACTGTA
TGAAA-TTTT-GCCCCTCCCAAAGGTAAAGGTTACAAGTGGTGCTAGAAAAGAACCTTTTCACACAGGATATATGTTATC
CCTAATTTTCCACACGCCAGTGTTTA--CCTTACACCTCGATTAAGCACTTCCTCTTACC-----------CCCCAGCCA
TCTATAAATGTTGGGTCATCACCATCAC-AAAGCTGCAAGAAGCAACAGCCTACAGCTAGCTCAAGTGAAGTGAGCTGAT
CGATTGAGATACAGAGGAGA------GATAGCTAGGCAATTCAGCAATGGCGGAGAGGGTGACCGCGATTGCGTCGCAGG
GCACAGTGGTGATCTTTGGGGCGAGCTGCTGCTGCATGTCCCACACCATGACGAGGCTCTTTGCGGAGCTGGGTGTTAGC
TCTACGGTGCACGAGCTGGACAAGGACCCCCAGAGGGAGGACCTGGAGAGGGCGCTCGCTGGCATGGTGGGCCAGAGCCC
GGCGGTGCCGGCAGTATTCATCCGTGGCGCGCTTGTCGGTGGCACCAGGCAGGTCATGCAGCTGCATCTCGGCGGCCATC
TCGTGCCGCTGCTCCGCCAAGCTGGTGCCCTGTGGTCCTGA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>SNPs
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS------SSS--S---S---SS-SSS--SS-SSSS---SSSSS---SSS-SSSSS-S-SSS-SSSS
S-SSSSSSSS---SSSSS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S------------------S-------------
---------------------------------------------------------S---S------------------
-----------------------------------------------------S--------------------------
----------------S---------------------S------S----------------------------------
-----------------------------------------------------------------S--S-----------
------------------------------S------------------
>forward_1955
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TTCTAACTACTGATCAGTAATGCCA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>reverse_3906
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TGACGCACCAACTCA
CTCAA--------------------------------------------
