>input_sequence_55872
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------ATGGCGCTTGTTCCCCGGTCGTCCCTGCGCTCCCTGGTGCTGCTCGTGTCCCACGGGAAGCCACGGCTGAGCTC
TTTCTTCTCCTCCGCCGCCGCCACA---------------CCGGCCGCCCCAGGAGCTGATAATCTTCCGGCTGCTCCGG
CCGTCCACCCCCCAGGTAGCATACTAAGCCGAACAGATTAATTCTTCCTGCATGTACGTC-TCTCCTTTTGATTCCATTG
CTAACGG-------GTTACTCCATTGCGTTTTGCAGCTCCGACAGGCCGTTCATGCCCCAAGCTCCCTGTGGAGGAAGAG
TTTGCTCTTCACCCAATTCCTGGGGGTCCACGTCCACATCCACGACCACGTCCGCGCCCATGTGGAGCCGCTAAAGATGC
AAGTGTAACCGACAATGCTTTGCTGAACGCCCCTGAAGATCCTTGTACATACCCGGATCCTGATCGTGGTTCTGATGGCA
TCTTTGAAGATCCCCGACACCCAGTTCCTGATCCATCAGGTAGGGGGCGTAGCGCCGTAACCGATGAGCCTGCTCAGTGC
ACCCAGGAGCACCCTAAGTACCCAGTAACCGATAGTTCAACTGACAAGGGCCCTGCTGTGGAACATCCTGCATACACAAC
TCCTGGTTATGGTTCATGTAGCACACCTGAGCCTATGCCTGATAAGCCTCCCTGCGGCACCTCCGAGGATGTGAAACAAC
GAGATGTTGATCCACCGCCTCCCGCGCGTGAAGGTGTTGGACACCGAGTTGTCGATCCACCACGCGGGG---------GC
AGGGGGCGTCGCGCTGTGCCCGACGAGCCAGAGCAGTGCGCCCAGGAGCATCCCAAGTACCCAGTTCCTGACAGTTCAAG
TGACAAGGTCTTCTCCTCCTGCTCCTCCGCCGTTCCGCCGCTGGCTCCAGGAAGTTGCACCCCGGCTGCCCCCGACGTTC
AGCCTCCAGTCACCCCAGGTAGCTCGCCAACCCGAACAAATTAATGCTTCCCGC-ACGCACGCGTCTCTCCTTTGATCCC
AGCTAACAGTTACTCCATTGCGTTGCAGCTCCGCCAAATCGTTCAGGCCACAAGCTCCCTGATCACGAAGAGTCTGTTTT
CAACCCACTTCCTGATCCACCATCAGGTCACAGGCTTAGCCCTGTAATCGAAGAGCCTGCCCGGTGCACCCTGGACAACC
CCAAATACCCAACTCC----------------------------------------------------------------
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------------------------TGATCATGCTTCATGTAGCCCATCTGAAGGTGTATCTGCGGACTTGTTGGAAGATC
CTCTGCATCGGGTGCCTGATCCACCACGTAGGCCCTAA------------------------------------------
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>chr7D_1_TraesCS7D01G355700
AATGCTTTGTCCGAGCAACTTGCCGAGGGCAAGGGCAGGAGCTCTGCCATTTCATACAAGGATAACAGACCATTGTAGTT
CTTTTGGTTGATTTCCTATGACCTAATTGCCTAGAAATTCTAATATCTCTGGCAATTTCTTTTTTT--------------
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---------------------------------------------------------------TTACACTCATTCACATA
TGACAGATGCACTTTTCTAGTGCCCTG------TTCTGTCGAACAACTATTCCTGCGAGTTTTACGCGTTTTGCAATGGT
CTGTATTGCGCGTGTTTT---------------------------------------TCCTCTTGCGAGCCAAAGGGATC
ATGGCTGTTGATTTCATTAGTGTGAACCTCAACCTCCGTCTGTCAAACTCATGTATTTTCACATACACCTTTTTTCAGAC
GAGACGACTCTATGCCTCTATGCACGCTGCATTGACTGAGCCAGCGGCACAGCAACTTGCCCGAAGAACGGCGGCTCCAA
AGTCTGCACGCGCTGCCTTGACCACCAGACCAGCGGCAGGGCAACTTGCCTGCAGAATGTCAATGGTACGGGCGTACGGT
ATACTGGGCATGGTATGAACAAATCAACGCCTCATCATGCGGTCCATCCATTCAAATATGACGGGTAAATCAAGCTTACA
CAAATTGTCTACATGAAAATAGCGCAAAGGTTGACTTGCGGCCATGTT-GATTGGCACCCAGTCTCGGGACTGAGATATC
AACATGTGCCAAGAGCTCAAGATACCTCCAAACCTCTGAATCCATTGCATCTATCCGGCTAGTGGCAGAGTAGATAGAGG
CATAGAGTGTTTGACTGGACTACACCATCCATTCCACCCACATGGTATGAACGCATGCCTTCCACTTGATGATGAACACA
AAGTATGAACTCGTAGGTGAAGGTCAAGGCAGCTGGGTGCGCGCGCGCACCTCCGTGAGACATGGAAGTCCTCTCTGGAA
CACATATAAGCATAC--GAATCCCGGGGCCAGGAGGCATTCCTCATCATTTACCAACGTGACCTCTGTC-TAGCTAGCTG
GAGAGGATGGCGCTTGTTCCCCGGTCGTCCCTGCGCTCCCTGGTGCTGCTCGTGTCCCACGGGAAGCCACGGCTGAGCTC
TTTCTTCTCCTCCGCCGCCGCCACA---------------CCGGCCGCCCCAGGAGCTGATAATCTTCCGGCTGCTCCGG
CCGTCCACCCCCCAGGTAGCATACTAAGCCGAACAGATTAATTCTTCCTGCATGTACGTC-TCTCCTTTTGATTCCATTG
CTAACGG-------GTTACTCCATTGCGTTTTGCAGCTCCGACAGGCCGTTCATGCCCCAAGCTCCCTGTGGAGGAAGAG
TTTGCTCTTCACCCAATTCCTGGGGGTCCACGTCCACATCCACGACCACGTCCGCGCCCATGTGGAGCCGCTAAAGATGC
AAGTGTAACCGACAATGCTTTGCTGAACGCCCCTGAAGATCCTTGTACATACCCGGATCCTGATCGTGGTTCTGATGGCA
TCTTTGAAGATCCCCGACACCCAGTTCCTGATCCATCAGGTAGGGGGCGTAGCGCCGTAACCGATGAGCCTGCTCAGTGC
ACCCAGGAGCACCCTAAGTACCCAGTAACCGATAGTTCAACTGACAAGGGCCCTGCTGTGGAACATCCTGCATACACAAC
TCCTGGTTATGGTTCATGTAGCACACCTGAGCCTATGCCTGATAAGCCTCCCTGCGGCACCTCCGAGGATGTGAAACAAC
GAGATGTTGATCCACCGCCTCCCGCGCGTGAAGGTGTTGGACACCGAGTTGTCGATCCACCACGCGGGG---------GC
AGGGGGCGTCGCGCTGTGCCCGACGAGCCAGAGCAGTGCGCCCAGGAGCATCCCAAGTACCCAGTTCCTGACAGTTCAAG
TGACAAGGTCTTCTCCTCCTGCTCCTCCGCCGTTCCGCCGCTGGCTCCAGGAAGTTGCACCCCGGCTGCCCCCGACGTTC
AGCCTCCAGTCACCCCAGGTAGCTCGCCAACCCGAACAAATTAATGCTTCCCGC-ACGCACGCGTCTCTCCTTTGATCCC
AGCTAACAGTTACTCCATTGCGTTGCAGCTCCGCCAAATCGTTCAGGCCACAAGCTCCCTGATCACGAAGAGTCTGTTTT
CAACCCACTTCCTGATCCACCATCAGGTCACAGGCTTAGCCCTGTAATCGAAGAGCCTGCCCGGTGCACCCTGGACAACC
CCAAATACCCAACTCC----------------------------------------------------------------
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------------------------TGATCATGCTTCATGTAGCCCATCTGAAGGTGTATCTGCGGACTTGTTGGAAGATC
CTCTGCATCGGGTGCCTGATCCACCACGTAGGCCCTAATGAATCGACGCAG-TGCAGCCAGGAGCATGAGCATCCTCAGC
ACCCAGCTCTGGGCAGTTCCAAGTGACGACATCTTTCAGACACCTTCTGACA----------------------------
-----------------GGATCACGAACCGGGGTTATAAAGCTACGTCCTGCAAGCGCTGGGTCACTGAGAAGATAGCGA
GCACCTAATTAAGCTGATACGAAC-------------------------------TAGGAGAAAAAATT-GGCAGCTTTC
CCTGGCTTCTGCCCGTGCTGGTCTGTATACTGTA-GACTCGTAATTTTGTTGCGATGAATCCTTGTGTTGTGAGCA--GA
GAAAAATCTCGGTGGTTACTGGCTAGTTACTGCTGCGATCTTGTTGTAA-----TCCCAATACATGCTTTCAAGGAAAAA
GAGTTATGGTTGAGCCCCGGCTGCACTGCCTATCAGCACATACAAATACACATTCATCTAAAAAATGCATTGCATTTCAT
ACACACTCACATTCACTTTAATTGTCCATGGTCAACACATACAACGAAGTACTTGAATCTCGGGCTGTGGGCGGCGGCGG
CAAGGCGGCTCGGCCCTCTGG-AGTGGCGATTTCCATTTGCCGCGCCGGCATCATAGCAGCTCGGCGGGTTGGCTATGGC
GGCGGCTGGATTTCTGGCGTCGGCTCTGTGTGTAGGTGGCCCGGTTCGACCTTCGATCCATCTCCTTGACGTCCGGCCGC
TATCTTCGTCGAT-GGTTGGCCCTCTCTCAGCTGCGGTCCATCAGTCGTCTCGCACCCGGCAGCAAGACCGAGCTCGTCT
CGCAGGACTGACCTTGTCTCACGCT-----------------------------CGGCAGCAGGACCATGCTCGTCTTGC
GCCCGGCGACAGGACCGAGCTCGTCTCGCGCCCAATGCCGCAGGACGGGTCAATAGATGTCAGTTTTGGCCGGCCTATTG
GGTTT-GGCACTGGGGGCAGTCCAGGGGTGCGAAAGGCGGGTCCTGTCCCCTCGTATCTTTGGTTGGGGCAGCGGCGAGT
CTCGGGTGAGGTGGTGTCAAGGTCTTGGATGCCAGG
>chr7A_1
AATGCTTTTTCCGAGCAACTTGCCGAGGGCAAGGGCAGGAGCTCTGCCATTTCATACAAAGATAAGAGGCCATTGTAGTT
CTTTGGGTTGATTTCCTATGACCTAACTTCGTAGAAATTCGAACATCTCCTGCAATTTCTTTTTTTTTACACTCGTTCAC
ATGTGACAGATGCACTTTTCTAGTGCTCATTCTTTATTCTGTGCTGCGCGTGTACCTGTCGAACAACTATTTCTGCAAGT
TTTACGCGTTTTACAATTATCTGTGTTGCGTACCTGTCAAATTCCTCTATTTTCTTTTCACACAGATGTGTGTGTGTGTG
TGTGTGTGTTTTCCTCCTTGCAATCCAAAGAGGCCATGGCTGTTGATTTCATTAGTGTGAACCTCAACCTCCGTCTGTCA
AACTCATGTATTTTCATATACACCTTTTTTCAGACGAGACGACTCTCCTGCAATTTCTTTGTTTTACACTCATTCACATA
TGACAGATGCACTTTTCTAGTGCGCTTTCTTTCTTCTGTCGAACAACTATTCCTGCAAGTTTTACGCATTTTG-AATGGT
CTGTGTTGCGCGTGTGCCTGTAAAATTCCTATATTTTCGTTTCATATATATGTGTTATCCTCTTGCGATCCAAAGAGGCC
CTGGCTGTTGATTTCATTAGTGTGAACCTCAACCTCCGTCTGTCAAACTCATGTATTTTCATATACACCTTTTTTCAGAT
GAGACGACTCTATGCCTCATTGACCC------------AGCCAGCGGCACAGCAACTTGCCCGAAGAACGGCGGCTCCAA
AGTCTGCACGCGCTGCCTTGACCACCAGACCAGCGGCAGGGCAACTTGCCTGCAGAATGTCAACGGTATGGGCGTACGGC
ATGCTGGGCATGGTATGAACAAATTAACCCCTCATCATGCGGTCCATCCATTCAAATATGACGGGTAAATCAAGCTTATG
CAAATTGTCTACATGAAAATAGCGGAAAGGTTGACTTGCGGCCATGTCAGATTGGCACGCAGTCTCGGGACTGAGATATC
AACATGTGCCAAGAGCTCAAGATACCTCCAAACCTCTGAATCCATTGCATCTATCCGGCTAGTGGCAGGGTAGATAGAGA
CGTAGAGTGTTTGACTGGACTATACCATCCATTCCACC-ACATGGTATGAGCGCATGCCTTTCCACT--TGATGAACACA
AATTATGGGCTCTTGGGTGAAGGTCAAGGCAGCTGGGTGCGCGCG----------TGAGACATGGAAGTCCTCTCTGCAA
CACATATATAAACACATGAATCCCGGGGCCAGGAGGCATCCCTCAATCCTCACCCATCAAGCTCTGCTAGTAGCGGGCTA
GAGAGGATGGCACTTGCTCCCCGGTCGTCTCTGCGCTCCCTGGTGCTGCTCATGTCGCACGGGAAGCCACGGCTGAGCTC
TTTCTTCTCCTCGTCCTCCGCGGCCGGCACAGGCGTTCCGCCGGCCACCCCAGGAGCCGA------------TGCTCCGG
CCGTCCAGCCCCCAGGTAGTATACTAACCCGCACAGATTAATGCTTCCTGCACGCACGCCGTCTCCTTTTGATGCCATTG
CTAACAGAGTGGCAGTTACTCCATTGTGCTTTGCAGCTCC---------TTCAGGCCCCAAGCTCCCTGTCGAGGAAGAG
TTTGTTCTTCACCCAATTCCTGGGGTTCTACGTCCACGTCCGT------GTCCGCACCCACCTGGAGCCGTTGAAGA---
---TGTAACCGACAAGGCTTGTCTGAACGCCCCTGAAGATCCTAGCAG--------------------------------
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--------------------------------------------------------------------TGCACACCCAAC
TCCTGATCAGGGTTCATCTAGCACACCTGAACCTGTATCTGACAAGCCTCCCTGGGATATCTC-----------------
----------------------------TGAAGATCCTGGACACCCGGTTCTTGATCCACCACCTCCACGTCCACCTCGC
AGGGGGCGTTGCGCTGTGACCGACGAGCCTGCGCGTTGCGCCCAGGAGCATCCCAAGTACCCAGTTCCCGACTGTTCAAG
TGACAAGGTCTTCTCCTACTGCTCCTCCGCCGTTCCGCCGCCGGCTCCAGGAACTTGCACCCCGGCTGCCCCCGACGTTC
AGCCTCCAGTCACCCCAGGTAGCTCGCCAACCTGAACAAATTAATGCTTCCTGCAACGCACGCGTCTCTCCTTTGATCCC
AGCTAACAGCTACTCCTTTCCGTTGCAGCTCTGCCAGATCGTTCAGGCCACAAGCTCCCCGATCACGAAGAGTTAGTTGT
TCACCCACTTCCTGAT---CCATCAGGTAACAGGCTTAGCCCTGTAATCGAAGAGCCTGCCCGGTGCACCCTGGACAACC
CCAAATACCCAACTCCCGGCAGTTCAAGCCACAAGCTCCCTGCTCACGAAGAGCTCGTTATACACCCACTTCCTGGGGGT
CCACGTCCGCGTCCACGTCCGCGTCCACGTCCACGTGGAGCCGTTAAAGATGTAACCGACAAGGCTTGTCTAAACGCCCC
CGAAGATCCTACATACCCAACTCCTGATCATGGTTCATCTAGCCCGTCTGT------------GGACTTGTTGGAAGACC
CTCTACATCCGGTGCGTGATCCACCAGGTAGGCCGTAA----TCGATGCAG-TGCACCCAGGAGCATCCCAGGT------
ACCCAGCTCTGGACAGTCCAA---GACGAGATCTTTCAGACTTAATTCGCCAAGAAGAAAAAATATCTTTCAGACTGAAG
TTCAGCAACCTCCTGACGGCTCACGAACCGGGGTTT--AAATTACAGCCTGCAAACGCTGGATCACC--GAAGATAGCGA
GCATCCAAGCTGATGCACACTAGCATCAACTCTACTAATATTGTGTCACATAGGATAGGAGAAAAAACAGGGCAGCTTTC
CCTGGCTTCTGCCCGTGCTGGGCTGTATGTACTGTGACTCATAATTTTGTTGTGATGAATCCTTGTGTTGTGAGCGGGGA
GAAAAATCCCGGTGGTTACTGACTAGTTACTGCTGCGATTTTGTAATCCCAAATTCCCAATACATGCTGTCAAGGAAAA-
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>chr7B_1605
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-------------------------------------------------------------------------ACCCAAC
TCCTGGTTATGGTTCATGTAGCACACCTGA------------CAAGCCTCCCTCCGGCGCCTCCGAGGATGTGAAACAAC
GAGATGTTGATCCACCACCTCCCGCGCGCGAAGGTGTTGGACACCGAGTTGTCGATCCACCACGCGGGG---------GC
AGGGGGCGTCGCGC---GCCCGACGAGCCAGAGCAGTGCGCCCAGGAGCATCCCAAGTACCCAGTTCCTGACAATTCAAG
TGACAAGGTCTGCTCCTCCGCTAC---------TCCGCCGCCGGCTCCAGGACCTTGCACCACGGCTGCCCCCGACGTCC
AGCCTCCAGTCACCCCAGGTAGCTCGCCAACCCGAACAAATTAATGCTTCCTGCAACGCACGCATCTCTCCTT-GATCCC
AGCTAACAGCTACTCCATTGCGTTGCAGCTCCGCCAAATCGTTCAGGCCACAAGCTCCCTGATCACGAAGAGTCTGTTTT
CAACCCACTTCCTGATCCACCATCAGGTCACAGGCTTAGCCCTGTAATCGAAGAGCCTGCCCGGTGCACCCTGGACAACC
CCAAATACCCAACTCC----------------------------------------------------------------
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------------------------TGATCGTGGTTCATGTAGCCCATCTGAAGGTGCATCTGGGGACTTGTTGGAAGATC
CTCTGCATCGGGTGCCTGATCCACCACGTAAGCCGTAA----TCGACGAGCCTGCACCCAGGAGCAT-------------
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>chr1D_2771
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---------------------------------------------------------------GCTGTGGGCGGCGGCGG
CGAGGCGGCTCGGCCCTCTGGGAGTGGCGGCTTCCATTCGCCGCACCGGCATCACGGCAGCTCAGCGGGTCGGCTGCGGC
AGCGGCTGGATTTCCGACGTCGGCTC-GTTTTTAGGCGGCCCGGTTTGACCTTCGATCCATCACCTCGGCGTCCGGCCGC
TATCTTTGTCGAAGGGTTGGCCCTCCCCCAGCTGCAGTCCATCACTTGTCTCGTGCCCGGTA------------------
-GCAGGACTGACCTTGTCTCACGCCCGACAACAGGACCGAGCTCGTCTCGCACCCGGCAGCAAGACCATGCTCGTCTCGC
GTCCGGCGGCAGGACCGAGCTCGTCTCGCGCCCGGTACCGCGGGACGGGTCGATGAAGGCTAGTTTTGGCCGGCCTATTG
GGTCTCGGCACTGGGGGCCGCCCAGGGGTGCGGAAGGCGGGTCCTTTCCGCTCGTATCTTTGGTTGGGATAGCGGCGGGT
CTCGGGTGAGGTGGTGTCAAGGTCTTGGATGCCGGG
>SNPs
--------S--------------------------------------------------S-----S--S-----------
----S---------------------S-S-S---------S--S-----SS-----------------------------
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-----------------------S--S-----------------------------S----------S-----S------
----S----------SSS--------------------------------------------------S------S-SS-
S------------------------------------------------------------S-----------------S
------------------SS--SS-SSSSSSSSSSSSS------------------------------------------
---------------------------------------------------------------S----S----------S
--S---------------------S---S-------------------------------------------------SS
------------------------S----------------------S----------S---------------------
--------------------------------------------------------------------S----------S
-S--------------------S---------------S-----------S----------S-SSS-SS-----------
--S----SS---S-S------------------------------SSSSSSSSSS----------------------S--
--------SSS-S--------------------------S-----SSSS-S---S-SSSSS-SSSSS-S-----SS---S
-----------S----S------------S---------------------S----S-----------------------
------------SS--S----SS-S---------------------S----------S--SSSSSSSSSSSS--------
-------S-----------S-------S---S----------S---------S-S---S--------------S------
-----S--------------------S-S-----------SSSSSSSSS----S----------------S---------
----S--------------------S--S--------S---SSSSSSSS------S----SS--------S-S----SSS
SSS------------S----SS---------------------S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--S----
------------------------------S---S-SS----S-------------------------------------
----------------S---------------------------------------------------------------
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-----------------------------------------S-----------S--------------------------
---------------------------------------------------S----------------------------
---------S----------------------------------------------------------------------
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--------------------------------S-----------------------S-----S-----------------
----------------------------------S---SSSS--------------S----------SSSSSSSSSSSSS
------------S----S-S-SSS-----S-----------SSSS-SS-S------------------------------
-------------------S---------------SSS--SS---SS-------S------S----SSS-----------
---S-S--SSSSSSSS-S--S-S--------------------------------------------SS-----------
---------------------S------SSSS-S------S-----------S----------------------S----
--------S------------S-----------------S----SS-SS-------------------S----------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
-S---------------------------SS-------S-----S---------SS-------S------S----SS---
S-------------S-S---------S--S-S----S---------S---------------S---S-S-----------
------S-----S------------S-S-------S--------S-S------SS-----S-SSSSSSSSSSSSSSSSSS
S-----------------------S-------------------------------------S--------------S--
-S------S------------------------SS-S----S---------S--SS-S-SS-------------------
---S--------------S-S-----------S------------S---S------------------SS-------S--
---------------------------------S--
>forward_1188
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------------------------------------------------GAACGCATGCCTTCCACTTG------------
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>reverse_3411
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--------------------------------------------------ACTTGAATCTCGGGCTGTGG----------
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