>input_sequence_55807
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------------------------------------------------------------CGGCCGTGGAAAGGGGAAGC
CTAGCCTAGCTGCGAGGAGTGAGGTCGGTACCGGCTTAGCTAGCAGCAATCTGCAGGTGAATTG---GGCACTAGCAGCA
GCAGCAGCAGCATCAATCAAGTGAGGATTTCGCAATGCGGCCGGCCGTGACGCACGACGACCTGTCCCTCCGCAAGGCGC
AGGAGCGCCGGGCGGGGCGCTCCGGCAGCCAGATCGCCGTCGCCCTCGTCGCGCTCTCCGTGCTCTGCGGCCTCGTCAGC
TTCATCCTCTGCCTCGCCGCCGAGGGCTCGCGCTCCGAGGTACGCACGCACGCACACCGACCAACACGCGGCCTTGCTAG
CTTACTATAGCTCGTG-----------------CTGATGCTGGCTGG----------CT---GCAGGTGTCCAACTACCT
GATGACCGTGGCCGGGAGCGGGGCGCAGGTGGAGCTGTGCTTCTACAACGGCAGCGGCCGCTCGGCGCTCGCCTTCTCCA
TCGGCGCCTTCCTGCTGCTGGCCGTCGCCATGTTCGCCGTGCACGCCTACATGCTGCTCGCCGTCGCTTCGCCGGACTCC
GCCGCCGCTGGCCTCGCCGTCGCCGAGGACCACCCCCGCGTGTCCTCCGCCACCAACACCCTCACCTGGCAAACCTGCTG
CCTCTTCTTCGTCACGTGGTACCAACATTACTTCAAG-----------------CATGCATTGGGCAAGAT---TGATGG
TGTGGATTCATAATAAACACTGA----TCGATGGGTGCAGGATTTGCTTCGGGCTCGCGGAGGTGCTGCTCATGATCGGG
ATCGGGGTGGAGTCCGGCCACGTCAGCGACTGGCGGAGGCCGCGGCAGGTGTGCCACCGGGTGCGCCCGGGGATGTTCGC
GGCGGCGGGGATACTGGGGCTCATCACCGTCGTCGTTGGCTTCGTCGTCTACGTGACCGCGGTGCACACGCAGAAGCTGC
TGAGGCAGCACGGCGGCGGCCACTACCCGCCGCACCCCGGCAGCGCCCCGTACCCCAGCG------------------TC
CAGCAGCACCACCTGCAGCCGCCCGTGTCGTACCCACCATACCCGGCCCCGCACCCACACCCTCATCCGGCGCCGAATGC
GCCGGAGATCACAGCGGCCGCGTGCCAGGTGCAGTCCAGCAACGCGTGGTGCATCACCAAGGACAAGGAGTACACCGATG
TTTGAATGCCTGA-------------------------------------------------------------------
--GCCGAGACGATGCACGTAAAATTCCTTTTCGTTTTCGAACAATTGCTTGCTGATTT-------------CAATTGGAT
TATTATTTGCTGATATGTAAAACAATTTGTTTGTACAAGGACAATATAAA------------------------------
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----------------------------------
>chr3A_1_TraesCS3A01G172100
GAGGTGGAGCCAGACACGACTGCACCAGCTCCACGCCACTCCAGCCAGAATCTTGCAAACCAAGCTGGTGTCTATTGACG
GCAAGACAACTCCACGGGTGAAGGTACGTTGGATAGGGCGACCAATGATGCATGATACTTGGGAAGAAGCCTTTGTTCTG
CATCAGCGTTTTCCTCTACTGTCGACTTGGGGGCAAGTCGCCTCTCAAGGGGTAGGGAATGTCATGGCACGGCCCAGCTC
AGGACGGAGGCCCAAGGCCGCGCGACGCAACAGGAGATTGGCTCGAGCGTTCGAGGCCCAGCGTAAGGAGGGAATTCTAG
GCACGGCAAGCAGCTCAGCTATATGAGGAGATTCAGAGAGGAGAACACGGGGGGAGAAAAGACTGGAACCTAGATCCTCT
CTCTGTATCATTTTCCCTCTTCTCCTACCTCTGCCCATAAATTGTATCTGAATTGTATCAGGAAGAACCTTGAACCCTAG
CTGGTTCATAACACATGGCACTGCCGACCTTGCATCTGTTTTCTTCCAAA----AAAATAAAAAAAATCGTAGCCCTTTC
TCTTACCTATAGGTTGCCTCGTTGGCGCTACAAAGCGCAGATGCTGCGCGTCGCTTTCCCGAAAAGGCACCGCGGCGAAT
TACCCACCCCAGCGGAAAGAAGAAGGTGCCCTCCTCTCCTCCTCATCACT----------GGTGAAAAAGAAGGAAAGGC
AAAACGAATCGGAATGTCTCCCACCGCGGCACGGCGCAAGAAACCCCGATCCCC-----TCACCCACGCTCCCATCCCAT
GCATCATCGCCATGCCAT-CCATGGATTCCTCCCGTGCGGCGTCTCCCAACCCAAGTTCCTAACCCCACCCACACCCACA
CCCACACCCAGCAACCCCAATTCCTTCCTCTCCCACCAACGCAACCACATATTCCATCGTCGCCGTCACCTTGACGGCTA
GACGCAGGTAGAGACCGACCGGCCCCATATATACCATACGTGACTGGGCAACATCGTATCCGGCCGTGGAAAGGGGAAGC
CTAGCCTAGCTGCGAGGAGTGAGGTCGGTACCGGCTTAGCTAGCAGCAATCTGCAGGTGAATTG---GGCACTAGCAGCA
GCAGCAGCAGCATCAATCAAGTGAGGATTTCGCAATGCGGCCGGCCGTGACGCACGACGACCTGTCCCTCCGCAAGGCGC
AGGAGCGCCGGGCGGGGCGCTCCGGCAGCCAGATCGCCGTCGCCCTCGTCGCGCTCTCCGTGCTCTGCGGCCTCGTCAGC
TTCATCCTCTGCCTCGCCGCCGAGGGCTCGCGCTCCGAGGTACGCACGCACGCACACCGACCAACACGCGGCCTTGCTAG
CTTACTATAGCTCGTG-----------------CTGATGCTGGCTGG----------CT---GCAGGTGTCCAACTACCT
GATGACCGTGGCCGGGAGCGGGGCGCAGGTGGAGCTGTGCTTCTACAACGGCAGCGGCCGCTCGGCGCTCGCCTTCTCCA
TCGGCGCCTTCCTGCTGCTGGCCGTCGCCATGTTCGCCGTGCACGCCTACATGCTGCTCGCCGTCGCTTCGCCGGACTCC
GCCGCCGCTGGCCTCGCCGTCGCCGAGGACCACCCCCGCGTGTCCTCCGCCACCAACACCCTCACCTGGCAAACCTGCTG
CCTCTTCTTCGTCACGTGGTACCAACATTACTTCAAG-----------------CATGCATTGGGCAAGAT---TGATGG
TGTGGATTCATAATAAACACTGA----TCGATGGGTGCAGGATTTGCTTCGGGCTCGCGGAGGTGCTGCTCATGATCGGG
ATCGGGGTGGAGTCCGGCCACGTCAGCGACTGGCGGAGGCCGCGGCAGGTGTGCCACCGGGTGCGCCCGGGGATGTTCGC
GGCGGCGGGGATACTGGGGCTCATCACCGTCGTCGTTGGCTTCGTCGTCTACGTGACCGCGGTGCACACGCAGAAGCTGC
TGAGGCAGCACGGCGGCGGCCACTACCCGCCGCACCCCGGCAGCGCCCCGTACCCCAGCG------------------TC
CAGCAGCACCACCTGCAGCCGCCCGTGTCGTACCCACCATACCCGGCCCCGCACCCACACCCTCATCCGGCGCCGAATGC
GCCGGAGATCACAGCGGCCGCGTGCCAGGTGCAGTCCAGCAACGCGTGGTGCATCACCAAGGACAAGGAGTACACCGATG
TTTGAATGCCTGA-------------------------------------------------------------------
--GCCGAGACGATGCACGTAAAATTCCTTTTCGTTTTCGAACAATTGCTTGCTGATTT-------------CAATTGGAT
TATTATTTGCTGATATGTAAAACAATTTGTTTGTACAAGGACAATATAAATGTTTTAACTTGTTA-TTATGCTGTTCATT
TGGCCTGCCAACTCTGTAATCACAATGCCCTTGTCAAGATTGGAACATGCAAATCAAAATTGATCACAACAAA-------
----------------ACTGATAATTAAGTGAAAGCTGACATTGCCATGTTCGGACAAACTGCAACTCACTTCATTCCTG
AAGAACCCCACAAGACCAAACCATTCAAGAATTGTCCCCTAAATGCCTCGCAGAGTTGCAGAAGCTTAAAACTCAGGCTA
TACAGTAGCAAAATAGTGCACACCATACTAAAGATGCAAACCCCTACATAGTAGCCTGATAAAAAAGACCCAGACTCCTC
AAGTTTGACGATTATACTCCTCTTACAAACGCTGTGATATTGATACCCAGGACCAGTTGCTTCCTTGAAAATCTTCAGCT
TATTGGACCCACCACAACCATGACCTTACCCCACACACCGACTAGACCAAATGGTGACAACTGCTGCGACAAGGGAATTA
CCACCATTGGTCAAATCTGCAAAAGGAATTTAAAATTATATTATTGGTTGTCTCTTTGCTCAAAAGCTGATTCATGCTAC
CATATCGAGCAAATATGACAAGAGAAACAACAAATATGGTTATATGTTGAGAGTACCGACCTGTATTCAGCCCAAGTTCA
GATCAGGGTTGCCACCTTGGCCAAAGTCAAAGGCAACACCTGTGGGAGCTTCCATAGTTGCCCCCATCGCATCATCTTCC
TCCTCCATCCAGTAAGCCTCGAGAATCTTCACAGCCTTCTCATAGATCTCATTGTTATCATGGCTCTGCAGGTTCTCAAT
CTTTTCCAGGCCCTCTGCTTCATCAATCATCTGCGCATAGACATTCCCCTCCCCAGAAGCACCCAAATTCTTATCAGTTT
CTCCAACTTTGAGAATGTTCTCAAGACCCTCCAAGCAAACAGTAACAATCCTTGGATCTGGGCAAAGCAGGAGGTCACAC
AGTGGCTTGATGCAGCCCTCGCTAACCAAATACC
>chr3D_494
--------------------------------------------------------------------------------
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-------------CATGGCACTGCCGACCTTGCATCTGTTTTCTTCAAAA----AAA----AAAAAATCCTAGCCCTTTC
TCTTACCTATAGGTTGCCTCGTTGGCGCTACAAAGCGCAGATGCTCCGCGTCGCTTTCCCGAAAAGGCACCGCGGCGAAT
TACCCACCCCAGCGGAAAGAAGAAGGTGCCCTCCTCTCCGCCTCATCACT----------GGTGAAAAAGAAGGAAAGGC
GAAACGAATCGGAATGTCTCCCACCGCGGCACGGCGCAAGAAACCCCGATCCCC-----TCACCCACGCTCCCATCCCAT
GCATCATCGCCATGCCAT-CCATGGATTCCTCCCGTGCGGCGTCTCCCAACCCAAGTTCCTAACCCCACCCACACCC---
---ACACCCAGCAACCCCAATTCCTTCCTCTCCCACCAACGCAACCACATATTCTGTCGTCGCCGTCACCTTGACGGCTA
GACGCGGTTAGAGACCGACCGGCCCCATATATACCATACGTGACTGGGCAACATCGTATCCGGCCGTGGAAAGGAGAAGC
CTAGCCTAACTGCGAGGAGTGAGGTCGGTACCGGCTTAGC---CAGCAATCTGCAGGTGAATTG---GGGCACTAA--CA
GCAGCAGCAGCATCAATCAAGTGAGGATTTCACAATGCGGCCGGCCGTGACGCACGACGACCTGTCCCTCCGCAAGGCGC
AGGAGCGCCGGGCGGGGCGCTCCGGCAGCCAGATCGCCGTCGCCCTCGTCGCGCTCTCCGTGCTCTGCGGCCTCGTCAGC
TTCATCCTCTGCCTCGCCGCCGAGGGCTCGCGCTCCGAGGTACGCGCGCACCCCGACCAACCAACACGCGGCTTTGC---
-------TAGCTCGTG-----------------CTGATGCTGCCTGGGCTTGGCACTCT---GCAGGTGTCCAACTACCT
GATGACCGTGGCCGGGAGCGAGGCGCAGGTGGAGCTGTGCTTCTACAACGGCAGCGGCCGCTCGGCGCTCGCCTTCTCCA
TCGGCGCCTTCCTGCTGCTGGCCGTCGCCATGTTCGCCGTGCACGGCTACATGCTGCTCGCCGTCGCTTCGCCGGACTCC
GCCGCCGCTGGCCTCGCCGTCGCCGAGGACCACCCCCGCGTGTCCTCCGCCACCAACACCCTCACCTGGCAAACCTGCTG
CCTCTTCTTCGTCACGTGGTACCAACATTACTTCAAG-----------------CATGCATTGGGCAAGAT---TGATGG
TGTGGATTCATAATAAACACTGA----TCGATGGGTGCAGGATTTGCTTCGGGCTCGCGGAGGTGCTGCTCATGATCGGG
ATCGGGGTGGAGTCCGGCCACGTCAGCGACTGGCGGAGGCCGCGGCAGGTGTGCCACCGGGTGCGCCCGGGGATGTTCGC
GGCGGCGGGGATACTGGGGCTCATCACCGTCGTCGTTGGCTTCGTCGTCTACGTGACCGCGGTGCACACGCAGAAGCTGC
TGAGGCAGCACGGCGGCGGCCACTACCCGCCGCACCCCGGCAGCGCCCCGTACCCCAGCG------------------TC
CAGCAGCACCACCTGCAGCCGCCCGTGTCGTACCCACCACACCCGGCCCCGCACCCACACCCTCATCCGGCGCCGAATGC
GCCGGAGATTACGGCGGCCGCGTGCCAGGTGCAGTCCAGCAACGCGTGGTGCATCACCAAGGACAAGGAGTACACCGATG
TTTGAATGCCTGAGCCTGACACAATGAATGGTCGAAGAAGTGCAGAGACGATGAGCCTGACACAATGAATGGTCGAAGAA
GTGCAGAGACGATGCACGTAAAATTCCTTTTCGTTTTCGAACAATTGCTTGCTGATTTG----------AGCAATTGGAT
TATTATTTGCTGATATGTAAAATAATTTGTTTGTACAAGGACAATATTCATGTTTTAACTTGTTA-TTATGCTGTTCATT
TGGCCTGCCAACACTGTAATCACAATGCCCTTGTCAAGATTGGAACATGCAAATCAAAATTGATCACACAACAAAACTGA
GCAACGACACAGGTATACTAATAATTAAGTGAAAGCTGGCATTGACATGTTCGGACAAACTGCAACTCACTTCATTCCTG
AAGAACCCCACAA-ACCAAACCATTCAAGAATTGTCCCCTAAATGCCTCGCAGAGTTGCAGAAGCTTAAA-CTCAGGCTA
TACAGTAGCAAAATAGTGCACACCATACTAAAGATGCAAACCCCTACATAGTAGCCTGATAAAAAAGACCCAGACTCCTC
AAGTTTGACGATTATACTCCTCTTACAAACGCTGCGATATTGATACCCAGGACCAGTTGCTTCCTTGAAAATCTTCAGCT
TATTGGACCCACCACAACCATGACCTTACCCCACACACCGACTAGACCAAATGGTGACAACTGCAGCGACAAGGGAATTA
CCACCATTGGTCAAATCTGCAAAAGGAATTTAAAATTATATTATTGGTTGTCTCTTTGCTCAAAAGCTGATTCATGCTAC
CATATCGAGCAAATATGACGAGAGAAACAACAAATATGGTTATATGTTGAGAGTACCGACCTGTATTCAGCCCAAGTTCA
GATCAGGGTTGCCACCTTGGCCAAAGTCAAAGGCAACACCTGTGGGAGCTTCCATAGTTGCCCCCATCGCATCATCTTCC
TCCTCCATCCAGTAAGCCTCGAGAATCTTCACAGCCTTCTCATAGATTTCATTGTTATCATGGCTCTGCAGGTTCTCAAT
CTTTTCCAGGCCCTCTGCTTCATCAATCATCTGCGCATAGACATTCCCCTCCCCAGAAGCACCCAAATTCTTATCAGTTT
CTCCAACTTTGAGAATGTTCTCAAGACCCTCCAAGCAAACAGTAACAATCCTTGGATCTGGGCAAAGCAGGAGGTCACAC
AGTGGCTTGATGCAGCCCTCGCTAACCAAATACC
>chr3B_494
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-------------CATGGCACTGCCGACCTTGCATCTGTTTTCTTCCAAATAAAAAA----TAAAAATCCTAGCCCTTTC
TCTTACCTATAGGTTGCCTCGTTGGCGCTACAAAGCGCAGATGCTGCGCGTCGCTTTCCCCAAAAGGCACCGCGGCGAAT
TACCCACAGCAGCGGAAAGAAGAAGGTGCCC----CTCCTCCTCATCATCACCGGTGAAAGGTGAAAAAGAAGGAAAGGC
GAAACGAATCGGAATGTCTCCCACCGCGGCACGGCGCAAGAAACCCCGATCCCCCTCACTCACTCACGCTCCCATCCCAT
GCATCATCGCCATGCCATGCCATGGATTCCTCCCGTGCGGCGTCTCCCAACCCAAGTTCCTAA------CCCCACCC---
---ACACCCATCAACCCCAATTCCTTCCTCTCCCACCAACGCAACCACATATTCTGTCGTCGCCGTTACCTAGACGGCTA
GACGCAGGTAGAGACCGACCGGCCCCATATATACCATACGTGACTGGGCAACATCGTATC--------------------
-----------------------------ACTGGCTTAGC---TAGCAATCTGCAGGTGAATTAATTGGGCACTAA--CA
TCACCAGCATCA--AATCAAGTGAGGATTTCACAATGCGGCCGGCCGTGACGCACGACGACCTGTCCCTCCGCAAGGCGC
AGGAGCGCCGGGCGGGGCGCTCCGGCAGCCAGATCGCCGTCGGCCTCGTCGCGCTCTCCGTGCTCTGCGGCCTCGTCAGC
TTCATCCTCTGCCTCGCCGCCGAGGGCTCGCGCTCCGAGGTACGCACGCACGCACGTACG----CACGCGGCCTTGCTAG
CTCGACCGTTACTGTGACTGACTGACTGACTGACTGGTGCTGCCTGGGCTTCTTGGCTCGCCGCAGGTGTCCAACTACCT
GATGACCGTGGCCGGGAGCGGGGCGCAGGTGGAGCTGTGCTTCTACAACGGCAGCGGCCGCTCGGCGCTCGCCTTCTCCA
TCGGCGCCTTCCTGCTGCTGGCCGTCGCCATGTTCGCCGTGCACGCCTACATGCTCCTCGCCGTCGCTTCGCCGGACTCC
GCCGCCGCAGGCCTCGCCGTCGCTGAGGACCACCCCCGCGTGTCCTCCGCCACCAACACCCTCACCTGGCAAACCTGCTG
CCTCTTCTTCGTCACATGGTACGGAAATTACTTTCAAGCGCCGCGAAACCATGCCATGCATTGGGCAAGAAGAATGGTGG
TGTGGATTAATAATAAGAGCACACTCGTCGATGGGTGCAGGATTTGCTTCGGGCTCGCGGAGGTGCTGCTCATGATCGGG
ATCGGGGTAGAGTCCGGCCACGTCAGCGACTGGCGGAGGCCGCGGCAGGTGTGCCACCGGGTGCGCCCGGGGATGTTCGC
GGCGGCGGGGATACTGGGGCTCATCACCGTCGTCGTCGGCTTCGTCGTCTACGTGACCGCAGTGCACACGCAGAAGCTGC
TGCGGCAGCACGGCGGCGGCCACTACGCCCCGCACCCCGGCAGCGCCCCCTACCCCAGCGGTGCACCATACCCCGGCGTC
CAGCAGCACCACCTGCAGCCGCCGGTGTCGTACCCACCACACCCGGCCCCGCACCCACACCCTCATCCGGCGCCGAATGC
GCCGGAGATCACGGCCGCCGCTTGCCAGGTTCAGTCCAGCAACGCGTGGTGCATCACCAAGGACAAGGAGTACACCGATG
TTTAAA------AGCCTAAGCCAATGAATGGT--AAGAAGTGCAGAGACAATGAGCCTGACGCAATGAATGGTCGAACAA
GAGCAGAGACAATGCACGTAAAATTCCTTTTCGTTTTCGAACAATTGCTTGCTCATTTGTGATATAAGTAGCAATTGGAT
TATTATTCGCTGATATGTAAAACAATTTGTTTGTTCAAGGACAATATTCATGTTTTAACTTGTTAATTATGCTGTTCATT
TGGCCTGCCAACTCTGTAATCACAATGCCCTTGTCAAAATTGGAACATGCAAATCAAAATTGATCAGAGAACAAAACTGA
GCAACGACACAGGTATACTAATAATCAAGTGAAAGCTGACATTGACATGTTCGGACAAACTGCAACTCACTTCATTCCTG
AAGAACCCCACAA-ACCAAACCATTCAAGAATTGTCCCCTAAATGCCTCGCAGAGTTGCAGAAGCTTAAA-CTCAGGCTA
TACAGTAGCAAAATAGTGCACACCATACTAAAGATGCAA-CCCCTACATAGTAGCCTGATAAAAAAGACCCAGACTCCTC
AAGTTTGACGATTATACTCCTCTTACAAACGCTGCGATATTGATACCCAGGACCAGTTGCTTCCTTGAAAATCTTCAGCT
TATTGGACCCACCACAACCATGACCTTACCCCACGCACCGACT--ACCAAATGGTGGCAACTGCAGCGACAAGGGAATTA
CCACCATTGGTCAAATCTGCAAAAGGAATTTCAAATTATATTATTGGTTGTCTCTTTGCTCAAAAGCTGATTCACGCTAC
CATATCGAGCGAATATGACAAGAGAAACAACAAATACGGTTATATGTTGAGAGTACCGACCTGTATTCAGCCCAGGTTCA
GATCAGGGTTGCCACCTTGGCCAAAGTCAAAGGCAACACCTGTCGGAGCTTCCATAGTTGCCCCCATCGCATCATCTTCC
TCCTCCATCCAGTAAGCCTCAAGAATCTTCACAGCCTTCTCATAGATTTCATTGTTATCATGGCTCTGCAGGTTCTCAAT
CTTTTCCAGGCCCTCTGCTTCATCAATCATCTGCGCATAGACATTGCCCTCCCCAGAAGCACCCAAATTCTTATCAGTTT
CTCCAACTTTGAGAATGTTCTCAAGACCCTCCAAGCAAACAGTAACAATCCTTGGATCTGGGCAAAGCAGGAGGTCACAC
AGTGGCTTGATGCAGCCCTCGCTAACCAAATACC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS--------------------------------------------SSSS--------S----------
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S-------------------------------------------------------------------------------
-----------------------------------------------------------------------------SSS
SSS---------------------------------------------------SS------------------------
--------------------------------------------------------------------------S-----
--------S-------------------------------SSS--------------------------SSSSSSSSS--
-------------------------------S------------------------------------------------
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----------------------------------------------------------S---------------------
--SSSSS-----------------------------------S-------------------------------------
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---------------------------------------S----------------------------------------
------------S-------------------------------------------------------------------
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----S---------------------------------------------------------------------------
-----------------------------------------------SS-------------------------------
--------------------------------------------------------------------SS-S--------
-------------------S------------------------S-----------------------------------
-------------S--------------------------------------------------------S---------
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----------------------------------S---------------------------------------------
----------------------------------------------------------------S---------------
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-----------------------------------------------S--------------------------------
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>forward_54
----------------------------------GCCACTCCAGCCAGAATCTT--------------------------
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>reverse_1035
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--------------------------------------------------------------------------GGAAGC
CTAGCCTAGCTGC-------------------------------------------------------------------
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>forward_101
--------------------------------------------------------------------------------
-CAAGACAACTCCACGGGTGA-----------------------------------------------------------
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>reverse_1049
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--------GCTGCGAGGAGTGAGGTC------------------------------------------------------
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>forward_326
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------------------------------------------------------------------GGAGGGAATTCTAG
GCACGG--------------------------------------------------------------------------
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>reverse_1339
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----------------------------------------------------------GACCAACACGCGGCCTTG----
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>forward_1111
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---------------------------------------------------ATCTGCAGGTGAATTGGGCA---------
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>reverse_2605
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--------------------------------------------CCATGTTCGGACAAACTGCA----------------
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----------------------------------
